Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene45194.t1 | XP_003613479.1 | 68.8 | 80 | 24 | 1 | 1 | 79 | 45 | 124 | 2.50E-19 | 104.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene45194.t1 | G7K705 | 68.8 | 80 | 24 | 1 | 1 | 79 | 45 | 124 | 1.8e-19 | 104.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049159 | MS.gene45194 | 0.838139 | 3.43E-57 | -1.69E-46 |
| MS.gene049272 | MS.gene45194 | 0.811223 | 7.80E-51 | -1.69E-46 |
| MS.gene049404 | MS.gene45194 | 0.840354 | 9.14E-58 | -1.69E-46 |
| MS.gene049435 | MS.gene45194 | 0.835962 | 1.24E-56 | -1.69E-46 |
| MS.gene049501 | MS.gene45194 | 0.823816 | 1.13E-53 | -1.69E-46 |
| MS.gene049850 | MS.gene45194 | 0.824691 | 7.04E-54 | -1.69E-46 |
| MS.gene050020 | MS.gene45194 | 0.805017 | 1.63E-49 | -1.69E-46 |
| MS.gene050156 | MS.gene45194 | 0.806125 | 9.57E-50 | -1.69E-46 |
| MS.gene05016 | MS.gene45194 | 0.816168 | 6.35E-52 | -1.69E-46 |
| MS.gene050442 | MS.gene45194 | 0.844385 | 7.81E-59 | -1.69E-46 |
| MS.gene050629 | MS.gene45194 | -0.808905 | 2.46E-50 | -1.69E-46 |
| MS.gene050680 | MS.gene45194 | 0.814895 | 1.22E-51 | -1.69E-46 |
| MS.gene050719 | MS.gene45194 | 0.804721 | 1.89E-49 | -1.69E-46 |
| MS.gene050721 | MS.gene45194 | 0.805272 | 1.45E-49 | -1.69E-46 |
| MS.gene050724 | MS.gene45194 | 0.805178 | 1.51E-49 | -1.69E-46 |
| MS.gene050787 | MS.gene45194 | 0.820503 | 6.63E-53 | -1.69E-46 |
| MS.gene050807 | MS.gene45194 | 0.84297 | 1.87E-58 | -1.69E-46 |
| MS.gene050815 | MS.gene45194 | 0.809289 | 2.04E-50 | -1.69E-46 |
| MS.gene050826 | MS.gene45194 | 0.824925 | 6.20E-54 | -1.69E-46 |
| MS.gene050844 | MS.gene45194 | 0.835712 | 1.43E-56 | -1.69E-46 |
| MS.gene050959 | MS.gene45194 | 0.814591 | 1.43E-51 | -1.69E-46 |
| MS.gene051180 | MS.gene45194 | 0.821041 | 4.98E-53 | -1.69E-46 |
| MS.gene051198 | MS.gene45194 | 0.812047 | 5.16E-51 | -1.69E-46 |
| MS.gene051210 | MS.gene45194 | 0.802087 | 6.63E-49 | -1.69E-46 |
| MS.gene051247 | MS.gene45194 | 0.811988 | 5.32E-51 | -1.69E-46 |
| MS.gene051265 | MS.gene45194 | 0.858073 | 1.06E-62 | -1.69E-46 |
| MS.gene051344 | MS.gene45194 | 0.823698 | 1.20E-53 | -1.69E-46 |
| MS.gene051388 | MS.gene45194 | 0.813718 | 2.22E-51 | -1.69E-46 |
| MS.gene051719 | MS.gene45194 | 0.824524 | 7.71E-54 | -1.69E-46 |
| MS.gene051720 | MS.gene45194 | 0.81537 | 9.57E-52 | -1.69E-46 |
| MS.gene051800 | MS.gene45194 | 0.815823 | 7.59E-52 | -1.69E-46 |
| MS.gene051957 | MS.gene45194 | 0.803897 | 2.80E-49 | -1.69E-46 |
| MS.gene052020 | MS.gene45194 | 0.83997 | 1.15E-57 | -1.69E-46 |
| MS.gene052042 | MS.gene45194 | 0.801352 | 9.38E-49 | -1.69E-46 |
| MS.gene052190 | MS.gene45194 | 0.831674 | 1.46E-55 | -1.69E-46 |
| MS.gene052323 | MS.gene45194 | 0.822172 | 2.73E-53 | -1.69E-46 |
| MS.gene052384 | MS.gene45194 | 0.815775 | 7.78E-52 | -1.69E-46 |
| MS.gene052516 | MS.gene45194 | 0.816435 | 5.54E-52 | -1.69E-46 |
| MS.gene052519 | MS.gene45194 | 0.825113 | 5.59E-54 | -1.69E-46 |
| MS.gene052611 | MS.gene45194 | 0.835219 | 1.91E-56 | -1.69E-46 |
| MS.gene052613 | MS.gene45194 | 0.816184 | 6.30E-52 | -1.69E-46 |
| MS.gene052665 | MS.gene45194 | 0.819656 | 1.04E-52 | -1.69E-46 |
| MS.gene052773 | MS.gene45194 | 0.825853 | 3.74E-54 | -1.69E-46 |
| MS.gene052863 | MS.gene45194 | 0.852004 | 6.13E-61 | -1.69E-46 |
| MS.gene052896 | MS.gene45194 | 0.83597 | 1.23E-56 | -1.69E-46 |
| MS.gene053008 | MS.gene45194 | 0.830978 | 2.17E-55 | -1.69E-46 |
| MS.gene053054 | MS.gene45194 | -0.814569 | 1.44E-51 | -1.69E-46 |
| MS.gene053166 | MS.gene45194 | 0.83743 | 5.22E-57 | -1.69E-46 |
| MS.gene053184 | MS.gene45194 | 0.802617 | 5.15E-49 | -1.69E-46 |
| MS.gene053221 | MS.gene45194 | 0.818967 | 1.49E-52 | -1.69E-46 |
| MS.gene053331 | MS.gene45194 | 0.827515 | 1.50E-54 | -1.69E-46 |
| MS.gene053565 | MS.gene45194 | 0.804894 | 1.73E-49 | -1.69E-46 |
| MS.gene053966 | MS.gene45194 | 0.820501 | 6.63E-53 | -1.69E-46 |
| MS.gene054236 | MS.gene45194 | 0.81569 | 8.12E-52 | -1.69E-46 |
| MS.gene054291 | MS.gene45194 | -0.818225 | 2.19E-52 | -1.69E-46 |
| MS.gene054467 | MS.gene45194 | 0.842603 | 2.34E-58 | -1.69E-46 |
| MS.gene054468 | MS.gene45194 | 0.847453 | 1.15E-59 | -1.69E-46 |
| MS.gene054472 | MS.gene45194 | 0.847805 | 9.17E-60 | -1.69E-46 |
| MS.gene054559 | MS.gene45194 | 0.824184 | 9.26E-54 | -1.69E-46 |
| MS.gene05462 | MS.gene45194 | 0.805866 | 1.09E-49 | -1.69E-46 |
| MS.gene054651 | MS.gene45194 | 0.815575 | 8.62E-52 | -1.69E-46 |
| MS.gene054775 | MS.gene45194 | 0.824842 | 6.48E-54 | -1.69E-46 |
| MS.gene05510 | MS.gene45194 | 0.802231 | 6.19E-49 | -1.69E-46 |
| MS.gene055227 | MS.gene45194 | 0.814041 | 1.89E-51 | -1.69E-46 |
| MS.gene055356 | MS.gene45194 | 0.855436 | 6.32E-62 | -1.69E-46 |
| MS.gene055357 | MS.gene45194 | 0.843103 | 1.72E-58 | -1.69E-46 |
| MS.gene055358 | MS.gene45194 | 0.859124 | 5.14E-63 | -1.69E-46 |
| MS.gene055465 | MS.gene45194 | 0.813592 | 2.37E-51 | -1.69E-46 |
| MS.gene055466 | MS.gene45194 | 0.823633 | 1.25E-53 | -1.69E-46 |
| MS.gene055468 | MS.gene45194 | 0.81438 | 1.59E-51 | -1.69E-46 |
| MS.gene055512 | MS.gene45194 | 0.800914 | 1.15E-48 | -1.69E-46 |
| MS.gene055608 | MS.gene45194 | 0.808065 | 3.72E-50 | -1.69E-46 |
| MS.gene055701 | MS.gene45194 | 0.814661 | 1.37E-51 | -1.69E-46 |
| MS.gene055778 | MS.gene45194 | 0.816034 | 6.81E-52 | -1.69E-46 |
| MS.gene055818 | MS.gene45194 | 0.861932 | 7.24E-64 | -1.69E-46 |
| MS.gene055926 | MS.gene45194 | 0.836642 | 8.30E-57 | -1.69E-46 |
| MS.gene05604 | MS.gene45194 | 0.82873 | 7.64E-55 | -1.69E-46 |
| MS.gene056173 | MS.gene45194 | 0.809248 | 2.08E-50 | -1.69E-46 |
| MS.gene056366 | MS.gene45194 | 0.821053 | 4.95E-53 | -1.69E-46 |
| MS.gene056506 | MS.gene45194 | 0.810434 | 1.15E-50 | -1.69E-46 |
| MS.gene056553 | MS.gene45194 | 0.824087 | 9.76E-54 | -1.69E-46 |
| MS.gene056643 | MS.gene45194 | 0.804121 | 2.51E-49 | -1.69E-46 |
| MS.gene057026 | MS.gene45194 | 0.808332 | 3.26E-50 | -1.69E-46 |
| MS.gene057060 | MS.gene45194 | 0.81917 | 1.34E-52 | -1.69E-46 |
| MS.gene057414 | MS.gene45194 | 0.803667 | 3.12E-49 | -1.69E-46 |
| MS.gene057444 | MS.gene45194 | 0.802435 | 5.62E-49 | -1.69E-46 |
| MS.gene057693 | MS.gene45194 | 0.811891 | 5.58E-51 | -1.69E-46 |
| MS.gene057869 | MS.gene45194 | 0.809361 | 1.97E-50 | -1.69E-46 |
| MS.gene057915 | MS.gene45194 | 0.815898 | 7.30E-52 | -1.69E-46 |
| MS.gene058037 | MS.gene45194 | 0.802393 | 5.73E-49 | -1.69E-46 |
| MS.gene058625 | MS.gene45194 | 0.850665 | 1.47E-60 | -1.69E-46 |
| MS.gene058636 | MS.gene45194 | 0.813744 | 2.19E-51 | -1.69E-46 |
| MS.gene058829 | MS.gene45194 | 0.824763 | 6.77E-54 | -1.69E-46 |
| MS.gene059128 | MS.gene45194 | 0.830894 | 2.27E-55 | -1.69E-46 |
| MS.gene059272 | MS.gene45194 | 0.813167 | 2.94E-51 | -1.69E-46 |
| MS.gene059584 | MS.gene45194 | 0.806815 | 6.85E-50 | -1.69E-46 |
| MS.gene059607 | MS.gene45194 | 0.801385 | 9.23E-49 | -1.69E-46 |
| MS.gene059713 | MS.gene45194 | 0.813301 | 2.74E-51 | -1.69E-46 |
| MS.gene059725 | MS.gene45194 | 0.805695 | 1.18E-49 | -1.69E-46 |
| MS.gene059789 | MS.gene45194 | 0.832839 | 7.52E-56 | -1.69E-46 |
| MS.gene059842 | MS.gene45194 | 0.830662 | 2.59E-55 | -1.69E-46 |
| MS.gene059937 | MS.gene45194 | 0.814264 | 1.68E-51 | -1.69E-46 |
| MS.gene060137 | MS.gene45194 | -0.816159 | 6.39E-52 | -1.69E-46 |
| MS.gene060312 | MS.gene45194 | 0.811776 | 5.91E-51 | -1.69E-46 |
| MS.gene060322 | MS.gene45194 | 0.86348 | 2.42E-64 | -1.69E-46 |
| MS.gene06052 | MS.gene45194 | 0.809343 | 1.98E-50 | -1.69E-46 |
| MS.gene060637 | MS.gene45194 | 0.800931 | 1.14E-48 | -1.69E-46 |
| MS.gene060683 | MS.gene45194 | 0.827594 | 1.44E-54 | -1.69E-46 |
| MS.gene060685 | MS.gene45194 | 0.83327 | 5.87E-56 | -1.69E-46 |
| MS.gene060781 | MS.gene45194 | 0.811767 | 5.94E-51 | -1.69E-46 |
| MS.gene060802 | MS.gene45194 | 0.820934 | 5.27E-53 | -1.69E-46 |
| MS.gene060803 | MS.gene45194 | 0.846063 | 2.75E-59 | -1.69E-46 |
| MS.gene060918 | MS.gene45194 | 0.818001 | 2.46E-52 | -1.69E-46 |
| MS.gene060998 | MS.gene45194 | 0.811872 | 5.63E-51 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene45194.t1 | MTR_5g037140 | 98.750 | 80 | 0 | 1 | 1 | 79 | 45 | 124 | 9.76e-54 | 162 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene45194.t1 | AT1G69970 | 72.727 | 33 | 8 | 1 | 48 | 79 | 70 | 102 | 9.88e-11 | 53.5 |
Find 20 sgRNAs with CRISPR-Local
Find 111 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCAGGAGAGCTGGAAATTC+TGG | 0.279686 | 3.1:+86432377 | MS.gene45194:intron |
| TAAACAAACCTGTTGTGAAT+AGG | 0.400300 | 3.1:-86430721 | None:intergenic |
| TTAGTTAGTGGTGGAGGAAC+AGG | 0.433994 | 3.1:+86430550 | MS.gene45194:CDS |
| TTTAGTAGCTTAGTTAGTGG+TGG | 0.443725 | 3.1:+86430541 | MS.gene45194:CDS |
| TGTCAACCATGATGCACAAT+TGG | 0.454537 | 3.1:+86430654 | MS.gene45194:CDS |
| GACCAGATCCTATTCACAAC+AGG | 0.455835 | 3.1:+86430713 | MS.gene45194:CDS |
| CATGATGAACAAGTTGTTGT+TGG | 0.456308 | 3.1:+86430613 | MS.gene45194:CDS |
| TGAATAGGATCTGGTCCATT+GGG | 0.478116 | 3.1:-86430706 | None:intergenic |
| GGAAATTCTGGTAGACCTCC+TGG | 0.500969 | 3.1:+86432389 | MS.gene45194:CDS |
| AGTAGCTTAGTTAGTGGTGG+AGG | 0.503163 | 3.1:+86430544 | MS.gene45194:CDS |
| AACCTGTTGTGAATAGGATC+TGG | 0.513984 | 3.1:-86430715 | None:intergenic |
| GTGAATAGGATCTGGTCCAT+TGG | 0.561168 | 3.1:-86430707 | None:intergenic |
| TGAAGTCCAATTGTGCATCA+TGG | 0.582511 | 3.1:-86430660 | None:intergenic |
| TCAGTTGACTAAGTTTGACC+AGG | 0.583639 | 3.1:-86432407 | None:intergenic |
| AGTTGTTGTTGGTAAAGACA+AGG | 0.593670 | 3.1:+86430624 | MS.gene45194:CDS |
| GACAAACAACTACAAGACAT+TGG | 0.623172 | 3.1:+86430572 | MS.gene45194:CDS |
| AACTACAAGACATTGGTCAG+AGG | 0.649811 | 3.1:+86430579 | MS.gene45194:CDS |
| GTTGTTGTTGGTAAAGACAA+GGG | 0.652393 | 3.1:+86430625 | MS.gene45194:CDS |
| AGTAAAAGAAGAGTTCCCAA+TGG | 0.653384 | 3.1:+86430691 | MS.gene45194:CDS |
| GTTGACTAAGTTTGACCAGG+AGG | 0.677258 | 3.1:-86432404 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTATACAATATTTAGAAAAT+AGG | + | chr3.1:86430959-86430978 | MS.gene45194:intron | 10.0% |
| !! | TTTGAAGATATTTAATATAT+AGG | - | chr3.1:86432088-86432107 | None:intergenic | 10.0% |
| !!! | TTTTGGATTTTTTTTTTTTT+TGG | + | chr3.1:86431465-86431484 | MS.gene45194:intron | 10.0% |
| !! | AAAAAAAGAGATAAAAACTA+AGG | + | chr3.1:86431337-86431356 | MS.gene45194:intron | 15.0% |
| !! | AAAAAAGAGATAAAAACTAA+GGG | + | chr3.1:86431338-86431357 | MS.gene45194:intron | 15.0% |
| !! | ATTATAGATGAATAATATGT+TGG | - | chr3.1:86432297-86432316 | None:intergenic | 15.0% |
| !! | TATCTGTTAATCTATTATAA+AGG | - | chr3.1:86431722-86431741 | None:intergenic | 15.0% |
| !! | TGACAAATTTATTTAATGTA+AGG | - | chr3.1:86431994-86432013 | None:intergenic | 15.0% |
| !!! | GAATTTTGAAATAGATATTT+AGG | - | chr3.1:86431962-86431981 | None:intergenic | 15.0% |
| !!! | TCTTTTTTTTTTTTTTTGAG+TGG | - | chr3.1:86431326-86431345 | None:intergenic | 15.0% |
| !! | AAGAAAGACAAAAAAAAAGA+AGG | - | chr3.1:86431863-86431882 | None:intergenic | 20.0% |
| !! | AATCTAATTCGATTAGATTA+GGG | + | chr3.1:86431185-86431204 | MS.gene45194:intron | 20.0% |
| !! | ATTAAATATCTTCAAATGCT+TGG | + | chr3.1:86432092-86432111 | MS.gene45194:intron | 20.0% |
| !! | CACAAATTATTAACAAATTC+AGG | + | chr3.1:86432032-86432051 | MS.gene45194:intron | 20.0% |
| !! | GATATATAAGTGAAAAGAAA+AGG | + | chr3.1:86431360-86431379 | MS.gene45194:intron | 20.0% |
| !! | TATTTAGAAAATAGGATATG+AGG | + | chr3.1:86430967-86430986 | MS.gene45194:intron | 20.0% |
| !! | TGAAATAGATATTTAGGAAA+TGG | - | chr3.1:86431956-86431975 | None:intergenic | 20.0% |
| !! | TTAAATATCTTCAAATGCTT+GGG | + | chr3.1:86432093-86432112 | MS.gene45194:intron | 20.0% |
| !!! | AACTTTTGATATTATGCTAA+GGG | + | chr3.1:86431289-86431308 | MS.gene45194:intron | 20.0% |
| !!! | ACGTATTAAACATTAGTTTT+TGG | + | chr3.1:86431448-86431467 | MS.gene45194:intron | 20.0% |
| !!! | TAACTTTTGATATTATGCTA+AGG | + | chr3.1:86431288-86431307 | MS.gene45194:intron | 20.0% |
| !!! | TCATTTGGTAACATTTTTTT+TGG | + | chr3.1:86432345-86432364 | MS.gene45194:intron | 20.0% |
| !!! | TTTTTTGGTAACATTTTTTC+AGG | + | chr3.1:86432360-86432379 | MS.gene45194:intron | 20.0% |
| ! | AAATCTTTATCCTGCTATAT+TGG | + | chr3.1:86431595-86431614 | MS.gene45194:intron | 25.0% |
| ! | AAGAAGATCGAATCTAATTA+AGG | - | chr3.1:86431513-86431532 | None:intergenic | 25.0% |
| ! | ACTAATGTTTAATACGTGTT+AGG | - | chr3.1:86431445-86431464 | None:intergenic | 25.0% |
| ! | CAATCTAATTCGATTAGATT+AGG | + | chr3.1:86431184-86431203 | MS.gene45194:intron | 25.0% |
| ! | GCTTATGAGTAATTAAGAAA+TGG | - | chr3.1:86431791-86431810 | None:intergenic | 25.0% |
| ! | TAAATATCTTCAAATGCTTG+GGG | + | chr3.1:86432094-86432113 | MS.gene45194:intron | 25.0% |
| ! | TACCAAATGATCTCTTAAAA+GGG | - | chr3.1:86432335-86432354 | None:intergenic | 25.0% |
| ! | TTACCAAATGATCTCTTAAA+AGG | - | chr3.1:86432336-86432355 | None:intergenic | 25.0% |
| ! | TTGGTTCAATCAGTTTAAAT+CGG | + | chr3.1:86431147-86431166 | MS.gene45194:intron | 25.0% |
| !! | AGCTCACAAAATTTTAAATG+CGG | + | chr3.1:86432180-86432199 | MS.gene45194:intron | 25.0% |
| !! | GTTTAAATCGGTTCAATTAA+AGG | + | chr3.1:86431159-86431178 | MS.gene45194:intron | 25.0% |
| !! | TTAACCTCTTTTAACATTGA+TGG | + | chr3.1:86431695-86431714 | MS.gene45194:intron | 25.0% |
| !!! | AGATTTTAAAGTCAGAGTTA+AGG | - | chr3.1:86431581-86431600 | None:intergenic | 25.0% |
| !!! | CTTCAATTGTTTTTAGTTCA+TGG | + | chr3.1:86432061-86432080 | MS.gene45194:intron | 25.0% |
| !!! | TAGTTAGCTTTCTTTCTTTT+TGG | - | chr3.1:86431629-86431648 | None:intergenic | 25.0% |
| !!! | TTCAATTTTTGCCACTTATT+AGG | + | chr3.1:86430796-86430815 | MS.gene45194:intron | 25.0% |
| ACTGATTGAACCAATTCAAT+CGG | - | chr3.1:86431141-86431160 | None:intergenic | 30.0% | |
| AGCAATGTATACCTAATAAG+TGG | - | chr3.1:86430810-86430829 | None:intergenic | 30.0% | |
| CTATATTCTAGGTGCAATAT+AGG | + | chr3.1:86430917-86430936 | MS.gene45194:intron | 30.0% | |
| GGTATGTGATAAGAATAGAA+AGG | - | chr3.1:86431492-86431511 | None:intergenic | 30.0% | |
| GTTAAAAAATCAAACCGAAG+AGG | - | chr3.1:86431272-86431291 | None:intergenic | 30.0% | |
| TAAACAAACCTGTTGTGAAT+AGG | - | chr3.1:86430724-86430743 | None:intergenic | 30.0% | |
| TATGTGACACTCTATATTCT+AGG | + | chr3.1:86430906-86430925 | MS.gene45194:intron | 30.0% | |
| TGTTAGGAAAGGAACATAAT+TGG | - | chr3.1:86431429-86431448 | None:intergenic | 30.0% | |
| TGTTTAATACGTGTTAGGAA+AGG | - | chr3.1:86431440-86431459 | None:intergenic | 30.0% | |
| TTCAGAGAGAAAAAATGACA+TGG | - | chr3.1:86431826-86431845 | None:intergenic | 30.0% | |
| ! | AAATTTTAAATGCGGAGAAG+TGG | + | chr3.1:86432188-86432207 | MS.gene45194:intron | 30.0% |
| ! | AATTTTAAATGCGGAGAAGT+GGG | + | chr3.1:86432189-86432208 | MS.gene45194:intron | 30.0% |
| !! | TTCCCTTTTAAGAGATCATT+TGG | + | chr3.1:86432330-86432349 | MS.gene45194:intron | 30.0% |
| !!! | GTTTTTAGTAGCTTAGTTAG+TGG | + | chr3.1:86430538-86430557 | MS.gene45194:CDS | 30.0% |
| ACATTGCATAATATATGCGG+GGG | - | chr3.1:86432237-86432256 | None:intergenic | 35.0% | |
| AGGACCATCAATGTTAAAAG+AGG | - | chr3.1:86431702-86431721 | None:intergenic | 35.0% | |
| AGTAAAAGAAGAGTTCCCAA+TGG | + | chr3.1:86430691-86430710 | MS.gene45194:CDS | 35.0% | |
| ATGAATAATATGTTGGTCCC+TGG | - | chr3.1:86432290-86432309 | None:intergenic | 35.0% | |
| CATGATGAACAAGTTGTTGT+TGG | + | chr3.1:86430613-86430632 | MS.gene45194:CDS | 35.0% | |
| CCAAACAACTGGTCAATTAT+TGG | + | chr3.1:86431228-86431247 | MS.gene45194:intron | 35.0% | |
| CCAATAATTGACCAGTTGTT+TGG | - | chr3.1:86431231-86431250 | None:intergenic | 35.0% | |
| CCAATTGAACCATAACTCAA+AGG | - | chr3.1:86431007-86431026 | None:intergenic | 35.0% | |
| GACAAACAACTACAAGACAT+TGG | + | chr3.1:86430572-86430591 | MS.gene45194:CDS | 35.0% | |
| GACATTGCATAATATATGCG+GGG | - | chr3.1:86432238-86432257 | None:intergenic | 35.0% | |
| GATTAGATTAGGGTTCAAAC+AGG | + | chr3.1:86431195-86431214 | MS.gene45194:intron | 35.0% | |
| GGACATTGCATAATATATGC+GGG | - | chr3.1:86432239-86432258 | None:intergenic | 35.0% | |
| GGGACATTGCATAATATATG+CGG | - | chr3.1:86432240-86432259 | None:intergenic | 35.0% | |
| TAATTGACCAGTTGTTTGGT+TGG | - | chr3.1:86431227-86431246 | None:intergenic | 35.0% | |
| TTTAGTAGCTTAGTTAGTGG+TGG | + | chr3.1:86430541-86430560 | MS.gene45194:CDS | 35.0% | |
| ! | ACCAATTCAATCGGTTCAAT+CGG | - | chr3.1:86431132-86431151 | None:intergenic | 35.0% |
| ! | AGTTGTTGTTGGTAAAGACA+AGG | + | chr3.1:86430624-86430643 | MS.gene45194:CDS | 35.0% |
| ! | ATGGTTCAATTGGTTTATCG+TGG | + | chr3.1:86431014-86431033 | MS.gene45194:intron | 35.0% |
| ! | ATTTTAAATGCGGAGAAGTG+GGG | + | chr3.1:86432190-86432209 | MS.gene45194:intron | 35.0% |
| ! | CCTTTGAGTTATGGTTCAAT+TGG | + | chr3.1:86431004-86431023 | MS.gene45194:intron | 35.0% |
| ! | GTTGTTGTTGGTAAAGACAA+GGG | + | chr3.1:86430625-86430644 | MS.gene45194:CDS | 35.0% |
| !! | ACTAGTTGATTTGACCTCTT+CGG | + | chr3.1:86431255-86431274 | MS.gene45194:intron | 35.0% |
| !!! | TAACATTTTTTCAGGAGAGC+TGG | + | chr3.1:86432368-86432387 | MS.gene45194:intron | 35.0% |
| AACCTGTTGTGAATAGGATC+TGG | - | chr3.1:86430718-86430737 | None:intergenic | 40.0% | |
| AACTACAAGACATTGGTCAG+AGG | + | chr3.1:86430579-86430598 | MS.gene45194:CDS | 40.0% | |
| ACCGATTGAACCGATTGAAT+TGG | + | chr3.1:86431128-86431147 | MS.gene45194:intron | 40.0% | |
| GATCAAACCAACCAAACAAC+TGG | + | chr3.1:86431217-86431236 | MS.gene45194:intron | 40.0% | |
| GGTCAAGTTTCCAATATAGC+AGG | - | chr3.1:86431608-86431627 | None:intergenic | 40.0% | |
| TGAAGTCCAATTGTGCATCA+TGG | - | chr3.1:86430663-86430682 | None:intergenic | 40.0% | |
| TGAATAGGATCTGGTCCATT+GGG | - | chr3.1:86430709-86430728 | None:intergenic | 40.0% | |
| TGTCAACCATGATGCACAAT+TGG | + | chr3.1:86430654-86430673 | MS.gene45194:CDS | 40.0% | |
| TTGTCAAGTACCCTAGTAGT+TGG | + | chr3.1:86432157-86432176 | MS.gene45194:intron | 40.0% | |
| TTTGTGAGCTCCAACTACTA+GGG | - | chr3.1:86432170-86432189 | None:intergenic | 40.0% | |
| ! | CTCATCTGACCTTTGAGTTA+TGG | + | chr3.1:86430995-86431014 | MS.gene45194:intron | 40.0% |
| ! | TTTTGTGAGCTCCAACTACT+AGG | - | chr3.1:86432171-86432190 | None:intergenic | 40.0% |
| AGTAGCTTAGTTAGTGGTGG+AGG | + | chr3.1:86430544-86430563 | MS.gene45194:CDS | 45.0% | |
| GACCAGATCCTATTCACAAC+AGG | + | chr3.1:86430713-86430732 | MS.gene45194:CDS | 45.0% | |
| GTGAATAGGATCTGGTCCAT+TGG | - | chr3.1:86430710-86430729 | None:intergenic | 45.0% | |
| TACCAATTGAGCCAGCTTCA+CGG | + | chr3.1:86432260-86432279 | MS.gene45194:intron | 45.0% | |
| TTCAGGAGAGCTGGAAATTC+TGG | + | chr3.1:86432377-86432396 | MS.gene45194:intron | 45.0% | |
| ! | TGAAGCTGGCTCAATTGGTA+GGG | - | chr3.1:86432260-86432279 | None:intergenic | 45.0% |
| ! | TTAGTTAGTGGTGGAGGAAC+AGG | + | chr3.1:86430550-86430569 | MS.gene45194:CDS | 45.0% |
| ACCAATTGAGCCAGCTTCAC+GGG | + | chr3.1:86432261-86432280 | MS.gene45194:intron | 50.0% | |
| GGAAATTCTGGTAGACCTCC+TGG | + | chr3.1:86432389-86432408 | MS.gene45194:CDS | 50.0% | |
| TGCATAATATATGCGGGGGC+CGG | - | chr3.1:86432233-86432252 | None:intergenic | 50.0% | |
| ! | GTGAAGCTGGCTCAATTGGT+AGG | - | chr3.1:86432261-86432280 | None:intergenic | 50.0% |
| CAATTGAGCCAGCTTCACGG+GGG | + | chr3.1:86432263-86432282 | MS.gene45194:intron | 55.0% | |
| CATAATATATGCGGGGGCCG+GGG | - | chr3.1:86432231-86432250 | None:intergenic | 55.0% | |
| CCAATTGAGCCAGCTTCACG+GGG | + | chr3.1:86432262-86432281 | MS.gene45194:intron | 55.0% | |
| GCATAATATATGCGGGGGCC+GGG | - | chr3.1:86432232-86432251 | None:intergenic | 55.0% | |
| ! | ATGCGGAGAAGTGGGGTGTT+CGG | + | chr3.1:86432197-86432216 | MS.gene45194:intron | 55.0% |
| ! | CCCCGTGAAGCTGGCTCAAT+TGG | - | chr3.1:86432265-86432284 | None:intergenic | 60.0% |
| ! | TGCGGAGAAGTGGGGTGTTC+GGG | + | chr3.1:86432198-86432217 | MS.gene45194:intron | 60.0% |
| GGTGTTCGGGGTTCGAACCC+CGG | + | chr3.1:86432211-86432230 | MS.gene45194:intron | 65.0% | |
| ! | GCGGAGAAGTGGGGTGTTCG+GGG | + | chr3.1:86432199-86432218 | MS.gene45194:intron | 65.0% |
| AGCCAGCTTCACGGGGGACC+AGG | + | chr3.1:86432269-86432288 | MS.gene45194:intron | 70.0% | |
| GCCAGCTTCACGGGGGACCA+GGG | + | chr3.1:86432270-86432289 | MS.gene45194:intron | 70.0% | |
| TCCCTGGTCCCCCGTGAAGC+TGG | - | chr3.1:86432274-86432293 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.1 | gene | 86430535 | 86432421 | 86430535 | ID=MS.gene45194 |
| chr3.1 | mRNA | 86430535 | 86432421 | 86430535 | ID=MS.gene45194.t1;Parent=MS.gene45194 |
| chr3.1 | exon | 86430535 | 86430734 | 86430535 | ID=MS.gene45194.t1.exon1;Parent=MS.gene45194.t1 |
| chr3.1 | CDS | 86430535 | 86430734 | 86430535 | ID=cds.MS.gene45194.t1;Parent=MS.gene45194.t1 |
| chr3.1 | exon | 86432382 | 86432421 | 86432382 | ID=MS.gene45194.t1.exon2;Parent=MS.gene45194.t1 |
| chr3.1 | CDS | 86432382 | 86432421 | 86432382 | ID=cds.MS.gene45194.t1;Parent=MS.gene45194.t1 |
| Gene Sequence |
| Protein sequence |
