AlfalfaGEDB | MS.gene09051

M. sativa cultivar XinJiangDaYe / MS.gene09051

KEGG: -
GO: GO:0003674 GO:0005488 GO:0006810 GO:0006811 GO:0006812 GO:0008150 GO:0030001 GO:0043167 GO:0043169 GO:0046872 GO:0051179 GO:0051234
PFAM: PF00403.29 PF19803.2

Nr:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene09051.t1	XP_013455961.1	93.9	261	13	2	10	270	67	324	4.30E-87	331.3

Swissprot:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene09051.t1	Q9FJH5	60.0	270	82	4	12	270	29	283	1.3e-36	154.8

Trembl:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene09051.t1	A0A072UJX7	93.9	261	13	2	10	270	67	324	3.1e-87	331.3

TFs/TRs:

Gene ID	Type	Classification

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network:

Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049142	MS.gene09051	0.812829	3.48E-51	-1.69E-46
MS.gene049159	MS.gene09051	0.842019	3.34E-58	-1.69E-46
MS.gene049190	MS.gene09051	0.841583	4.35E-58	-1.69E-46
MS.gene049404	MS.gene09051	0.807782	4.27E-50	-1.69E-46
MS.gene049501	MS.gene09051	0.866629	2.48E-65	-1.69E-46
MS.gene049850	MS.gene09051	0.843999	9.92E-59	-1.69E-46
MS.gene050020	MS.gene09051	0.816572	5.16E-52	-1.69E-46
MS.gene050561	MS.gene09051	0.800324	1.52E-48	-1.69E-46
MS.gene050657	MS.gene09051	0.809334	1.99E-50	-1.69E-46
MS.gene050719	MS.gene09051	0.809147	2.18E-50	-1.69E-46
MS.gene050721	MS.gene09051	0.80597	1.03E-49	-1.69E-46
MS.gene050724	MS.gene09051	0.806412	8.33E-50	-1.69E-46
MS.gene050759	MS.gene09051	0.805553	1.26E-49	-1.69E-46
MS.gene050807	MS.gene09051	0.818401	2.00E-52	-1.69E-46
MS.gene050844	MS.gene09051	0.822282	2.58E-53	-1.69E-46
MS.gene050959	MS.gene09051	0.824126	9.55E-54	-1.69E-46
MS.gene051247	MS.gene09051	0.863634	2.16E-64	-1.69E-46
MS.gene051279	MS.gene09051	0.839171	1.86E-57	-1.69E-46
MS.gene051388	MS.gene09051	0.839083	1.96E-57	-1.69E-46
MS.gene05157	MS.gene09051	0.819959	8.83E-53	-1.69E-46
MS.gene051700	MS.gene09051	0.811869	5.64E-51	-1.69E-46
MS.gene051719	MS.gene09051	0.839013	2.04E-57	-1.69E-46
MS.gene051720	MS.gene09051	0.859569	3.78E-63	-1.69E-46
MS.gene051744	MS.gene09051	0.857626	1.44E-62	-1.69E-46
MS.gene052020	MS.gene09051	0.854989	8.52E-62	-1.69E-46
MS.gene05215	MS.gene09051	0.803502	3.38E-49	-1.69E-46
MS.gene052323	MS.gene09051	0.822431	2.38E-53	-1.69E-46
MS.gene052516	MS.gene09051	0.842459	2.55E-58	-1.69E-46
MS.gene052519	MS.gene09051	0.816974	4.19E-52	-1.69E-46
MS.gene052582	MS.gene09051	0.810243	1.27E-50	-1.69E-46
MS.gene052584	MS.gene09051	0.813267	2.79E-51	-1.69E-46
MS.gene052611	MS.gene09051	0.851949	6.36E-61	-1.69E-46
MS.gene052612	MS.gene09051	0.823463	1.37E-53	-1.69E-46
MS.gene052665	MS.gene09051	0.845287	4.46E-59	-1.69E-46
MS.gene052732	MS.gene09051	0.809641	1.71E-50	-1.69E-46
MS.gene052773	MS.gene09051	0.810752	9.86E-51	-1.69E-46
MS.gene052863	MS.gene09051	0.834057	3.73E-56	-1.69E-46
MS.gene052896	MS.gene09051	0.844564	6.99E-59	-1.69E-46
MS.gene053144	MS.gene09051	0.859173	4.97E-63	-1.69E-46
MS.gene053221	MS.gene09051	0.803657	3.14E-49	-1.69E-46
MS.gene053226	MS.gene09051	0.84801	8.05E-60	-1.69E-46
MS.gene053331	MS.gene09051	0.803592	3.24E-49	-1.69E-46
MS.gene053599	MS.gene09051	0.801692	7.99E-49	-1.69E-46
MS.gene053883	MS.gene09051	0.805855	1.09E-49	-1.69E-46
MS.gene053998	MS.gene09051	0.81247	4.17E-51	-1.69E-46
MS.gene054467	MS.gene09051	0.815663	8.24E-52	-1.69E-46
MS.gene054584	MS.gene09051	0.865272	6.66E-65	-1.69E-46
MS.gene05462	MS.gene09051	0.813032	3.14E-51	-1.69E-46
MS.gene054651	MS.gene09051	0.819036	1.43E-52	-1.69E-46
MS.gene054775	MS.gene09051	0.814278	1.67E-51	-1.69E-46
MS.gene055227	MS.gene09051	0.805258	1.46E-49	-1.69E-46
MS.gene055357	MS.gene09051	0.805817	1.11E-49	-1.69E-46
MS.gene055465	MS.gene09051	0.868732	5.25E-66	-1.69E-46
MS.gene055466	MS.gene09051	0.878004	3.99E-69	-1.69E-46
MS.gene055468	MS.gene09051	0.849753	2.64E-60	-1.69E-46
MS.gene055469	MS.gene09051	0.81041	1.17E-50	-1.69E-46
MS.gene055512	MS.gene09051	0.824971	6.04E-54	-1.69E-46
MS.gene055537	MS.gene09051	0.830392	3.01E-55	-1.69E-46
MS.gene055580	MS.gene09051	-0.85721	1.91E-62	-1.69E-46
MS.gene055778	MS.gene09051	0.815755	7.86E-52	-1.69E-46
MS.gene055818	MS.gene09051	0.804035	2.62E-49	-1.69E-46
MS.gene055890	MS.gene09051	0.80324	3.83E-49	-1.69E-46
MS.gene056043	MS.gene09051	-0.836457	9.25E-57	-1.69E-46
MS.gene05604	MS.gene09051	0.808277	3.35E-50	-1.69E-46
MS.gene056050	MS.gene09051	0.81137	7.24E-51	-1.69E-46
MS.gene056173	MS.gene09051	0.807136	5.86E-50	-1.69E-46
MS.gene056174	MS.gene09051	0.810306	1.23E-50	-1.69E-46
MS.gene056308	MS.gene09051	0.816694	4.85E-52	-1.69E-46
MS.gene056366	MS.gene09051	0.805274	1.44E-49	-1.69E-46
MS.gene056507	MS.gene09051	0.810619	1.05E-50	-1.69E-46
MS.gene056545	MS.gene09051	0.801672	8.06E-49	-1.69E-46
MS.gene056553	MS.gene09051	0.823739	1.18E-53	-1.69E-46
MS.gene056595	MS.gene09051	0.819941	8.91E-53	-1.69E-46
MS.gene057314	MS.gene09051	0.817856	2.65E-52	-1.69E-46
MS.gene057444	MS.gene09051	0.821067	4.92E-53	-1.69E-46
MS.gene057869	MS.gene09051	0.802093	6.61E-49	-1.69E-46
MS.gene057915	MS.gene09051	0.860991	1.40E-63	-1.69E-46
MS.gene058010	MS.gene09051	0.81218	4.83E-51	-1.69E-46
MS.gene058037	MS.gene09051	0.811444	6.98E-51	-1.69E-46
MS.gene058625	MS.gene09051	0.83077	2.44E-55	-1.69E-46
MS.gene058636	MS.gene09051	0.807875	4.08E-50	-1.69E-46
MS.gene058668	MS.gene09051	0.807616	4.63E-50	-1.69E-46
MS.gene059015	MS.gene09051	0.808028	3.79E-50	-1.69E-46
MS.gene059154	MS.gene09051	0.819086	1.40E-52	-1.69E-46
MS.gene059570	MS.gene09051	0.810306	1.23E-50	-1.69E-46
MS.gene059625	MS.gene09051	0.808295	3.32E-50	-1.69E-46
MS.gene059725	MS.gene09051	0.803226	3.86E-49	-1.69E-46
MS.gene059842	MS.gene09051	0.822171	2.73E-53	-1.69E-46
MS.gene059937	MS.gene09051	0.826492	2.63E-54	-1.69E-46
MS.gene060167	MS.gene09051	0.804669	1.93E-49	-1.69E-46
MS.gene060194	MS.gene09051	0.8061	9.69E-50	-1.69E-46
MS.gene060312	MS.gene09051	0.808283	3.34E-50	-1.69E-46
MS.gene060519	MS.gene09051	0.805763	1.14E-49	-1.69E-46
MS.gene06052	MS.gene09051	0.80329	3.74E-49	-1.69E-46
MS.gene060587	MS.gene09051	0.828588	8.27E-55	-1.69E-46
MS.gene060803	MS.gene09051	0.808639	2.81E-50	-1.69E-46

PPI:

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene09051.t1	MTR_4g057765	96.296	270	7	3	1	270	58	324	0.0	501
MS.gene09051.t1	MTR_2g095480	57.143	161	65	3	12	171	68	225	2.08e-47	161
MS.gene09051.t1	MTR_7g101930	35.503	338	139	7	10	270	14	349	1.32e-44	154
MS.gene09051.t1	MTR_7g101930	41.573	89	49	1	96	181	3	91	1.21e-12	67.4
MS.gene09051.t1	MTR_1g063210	38.019	313	138	5	10	270	25	333	1.20e-38	138
MS.gene09051.t1	MTR_0041s0140	43.154	241	104	6	10	231	14	240	1.50e-37	133
MS.gene09051.t1	MTR_0041s0140	41.573	89	49	1	96	181	3	91	5.17e-12	64.7
MS.gene09051.t1	MTR_3g435930	29.851	268	134	6	5	270	22	237	1.04e-29	112
MS.gene09051.t1	MTR_8g096700	30.986	284	157	6	11	270	53	321	1.22e-28	111
MS.gene09051.t1	MTR_2g026685	34.866	261	141	4	12	270	36	269	2.03e-26	104
MS.gene09051.t1	MTR_2g026685	34.866	261	141	4	12	270	37	270	2.07e-26	104
MS.gene09051.t1	MTR_2g026685	33.984	256	140	4	17	270	1	229	3.87e-25	100
MS.gene09051.t1	MTR_3g093020	28.996	269	162	5	9	269	36	283	1.02e-22	94.7
MS.gene09051.t1	MTR_8g010540	29.368	269	143	6	10	267	30	262	4.46e-21	90.1
MS.gene09051.t1	MTR_3g099030	34.194	155	99	2	11	164	36	188	1.28e-20	89.0
MS.gene09051.t1	MTR_3g099040	34.839	155	99	2	11	164	36	189	3.28e-20	88.2
MS.gene09051.t1	MTR_5g069180	28.125	160	106	2	12	171	56	206	7.44e-17	79.3
MS.gene09051.t1	MTR_4g006650	36.975	119	73	2	12	129	170	287	1.51e-14	72.8

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene09051.t1	AT5G60800	49.270	274	105	4	12	270	29	283	1.48e-56	183
MS.gene09051.t1	AT5G60800	48.905	274	106	4	12	270	29	283	1.15e-55	181
MS.gene09051.t1	AT5G03380	40.299	201	87	3	9	176	24	224	1.77e-35	131
MS.gene09051.t1	AT5G03380	40.609	197	84	3	13	176	1	197	4.57e-35	129
MS.gene09051.t1	AT2G36950	36.012	336	136	8	12	270	53	386	1.96e-32	122
MS.gene09051.t1	AT2G28090	42.778	180	86	4	1	171	16	187	5.68e-31	115
MS.gene09051.t1	AT3G02960	31.939	263	120	7	12	270	39	246	3.88e-30	113
MS.gene09051.t1	AT5G50740	31.481	270	160	5	11	270	29	283	1.06e-29	113
MS.gene09051.t1	AT5G50740	31.481	270	160	5	11	270	29	283	1.06e-29	113
MS.gene09051.t1	AT5G50740	31.481	270	160	5	11	270	36	290	2.36e-29	112
MS.gene09051.t1	AT5G24580	26.523	279	165	5	12	269	58	317	4.99e-23	96.3
MS.gene09051.t1	AT5G24580	26.523	279	165	5	12	269	59	318	5.01e-23	96.3
MS.gene09051.t1	AT5G24580	26.523	279	165	5	12	269	59	318	5.01e-23	96.3
MS.gene09051.t1	AT5G24580	26.165	279	163	6	12	269	59	315	1.17e-19	87.0
MS.gene09051.t1	AT5G50740	39.695	131	61	3	11	132	29	150	1.40e-18	80.9
MS.gene09051.t1	AT5G63530	37.013	154	96	1	11	163	75	228	1.65e-18	84.3
MS.gene09051.t1	AT5G63530	37.013	154	96	1	11	163	60	213	1.88e-18	84.0
MS.gene09051.t1	AT5G50740	39.695	131	61	3	11	132	36	157	2.34e-18	80.5
MS.gene09051.t1	AT1G29000	31.902	163	110	1	10	171	16	178	8.38e-18	81.6
MS.gene09051.t1	AT1G29000	31.902	163	110	1	10	171	16	178	8.38e-18	81.6
MS.gene09051.t1	AT5G24580	25.820	244	141	5	47	269	7	231	6.43e-15	72.4
MS.gene09051.t1	AT5G19090	49.367	79	38	2	12	90	13	89	1.15e-11	64.7
MS.gene09051.t1	AT5G19090	49.367	79	38	2	12	90	13	89	1.15e-11	64.7
MS.gene09051.t1	AT5G19090	49.367	79	38	2	12	90	13	89	1.26e-11	65.1
MS.gene09051.t1	AT5G19090	49.367	79	38	2	12	90	13	89	1.26e-11	65.1
MS.gene09051.t1	AT5G19090	49.367	79	38	2	12	90	13	89	1.26e-11	65.1
MS.gene09051.t1	AT3G05220	53.968	63	28	1	12	74	13	74	1.86e-11	64.3
MS.gene09051.t1	AT3G06130	49.351	77	37	2	12	88	13	87	3.16e-11	63.5
MS.gene09051.t1	AT3G06130	49.351	77	37	2	12	88	13	87	4.84e-11	62.8

Find 60 sgRNAs with CRISPR-Local

Find 84 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
CTTCTTGTTGTTATCCTTCT+TGG	0.114690	4.2:+45563956	None:intergenic
CCACCTTCCTTGTCTTTCTT+TGG	0.170033	4.2:+45563434	None:intergenic
GTTCAACAACCCTTTGGTTT+TGG	0.232508	4.2:-45563290	MS.gene09051:CDS
TTCTTGTTGTTATCCTTCTT+GGG	0.350090	4.2:+45563957	None:intergenic
GATGGAAATGAAGGAGGAGG+TGG	0.350616	4.2:-45563395	MS.gene09051:CDS
GGAAATGAAGGAGGAGGTGG+GGG	0.362659	4.2:-45563392	MS.gene09051:CDS
AGTTAAGATAATGGAGTATA+TGG	0.364486	4.2:-45563312	MS.gene09051:CDS
ATTTATCACAGAAGCTTAAG+AGG	0.379478	4.2:-45563475	MS.gene09051:CDS
TGGAAATGAAGGAGGAGGTG+GGG	0.385436	4.2:-45563393	MS.gene09051:CDS
CAAGGATGTATTGATAAGAT+TGG	0.393223	4.2:-45563734	MS.gene09051:CDS
AGGAGGAGAAGTTAAGATAA+TGG	0.394798	4.2:-45563321	MS.gene09051:CDS
TTTGATGCTGTTAAGGTGTT+TGG	0.396644	4.2:+45564260	None:intergenic
TGAAACCTTTGATGCTGTTA+AGG	0.424806	4.2:+45564253	None:intergenic
TATGAATATTTAACATCTCT+TGG	0.426178	4.2:+45563222	None:intergenic
GACAAGGAAGGTGGTGGTGG+TGG	0.446982	4.2:-45563425	MS.gene09051:CDS
ATGGAAATGAAGGAGGAGGT+GGG	0.453141	4.2:-45563394	MS.gene09051:CDS
AAGGATGTATTGATAAGATT+GGG	0.459716	4.2:-45563733	MS.gene09051:CDS
TTGTTATCCTTCTTGGGAAG+TGG	0.460354	4.2:+45563963	None:intergenic
TATATGGTTCAACAACCCTT+TGG	0.467046	4.2:-45563296	MS.gene09051:CDS
GGTGGTGGTGGTGAGAAGGA+TGG	0.477883	4.2:-45563413	MS.gene09051:CDS
TTCTCATCACTAAACATTTG+TGG	0.482907	4.2:+45563185	None:intergenic
GTGAAAGCAGAGAGTGAAAC+CGG	0.483162	4.2:-45564074	MS.gene09051:CDS
GGGGTCCACATTTCCGGTGA+CGG	0.497438	4.2:+45564043	None:intergenic
CATTTCACCACTTCCCAAGA+AGG	0.504323	4.2:-45563970	MS.gene09051:CDS
GATGGTAATAACAATGAAGC+AGG	0.507061	4.2:-45563341	MS.gene09051:CDS
AAAGACAAGGAAGGTGGTGG+TGG	0.508002	4.2:-45563428	MS.gene09051:CDS
CACATGACAATGCAAGCATT+AGG	0.517378	4.2:+45563161	None:intergenic
AAAATTGTTATGAAAACTAA+AGG	0.517522	4.2:-45563710	MS.gene09051:intron
TTTCCATACCCAAAACCAAA+GGG	0.517695	4.2:+45563281	None:intergenic
GAGGTAAGAAGAAGAACAAG+GGG	0.518923	4.2:-45563370	MS.gene09051:CDS
ATCACAGAAGCTTAAGAGGA+AGG	0.524713	4.2:-45563471	MS.gene09051:CDS
AAGGATGGAAATGAAGGAGG+AGG	0.528175	4.2:-45563398	MS.gene09051:CDS
TATGGAAATGTAAATGTTGA+AGG	0.530190	4.2:-45563266	MS.gene09051:CDS
ACCGGAAAAGTAACCGTCAC+CGG	0.547833	4.2:-45564056	MS.gene09051:CDS
GAAGCTTAAGAGGAAGGTTG+AGG	0.551168	4.2:-45563465	MS.gene09051:CDS
AAACACCTTAACAGCATCAA+AGG	0.557937	4.2:-45564258	MS.gene09051:intron
GGTGAGAAGGATGGAAATGA+AGG	0.559036	4.2:-45563404	MS.gene09051:CDS
GGTAAGAAGAAGAACAAGGG+GGG	0.560885	4.2:-45563368	MS.gene09051:CDS
AAGGACAATGTGACTGTGAA+GGG	0.564120	4.2:-45563527	MS.gene09051:CDS
AGGTAAGAAGAAGAACAAGG+GGG	0.566617	4.2:-45563369	MS.gene09051:CDS
TACCAATTTCAAAACAGAAG+TGG	0.568866	4.2:+45563766	None:intergenic
AGTAACCGTCACCGGAAATG+TGG	0.571019	4.2:-45564048	MS.gene09051:CDS
GAGAAGGATGGAAATGAAGG+AGG	0.571182	4.2:-45563401	MS.gene09051:CDS
CAAGAAGGATAACAACAAGA+AGG	0.577155	4.2:-45563955	MS.gene09051:CDS
AAAGTTTATATGCATTGCGA+AGG	0.581995	4.2:-45564300	MS.gene09051:CDS
AATGAAAGTTGATAAAGAGA+AGG	0.588678	4.2:-45563546	MS.gene09051:CDS
GAAGGACAATGTGACTGTGA+AGG	0.599867	4.2:-45563528	MS.gene09051:CDS
GGAGGTAAGAAGAAGAACAA+GGG	0.601818	4.2:-45563371	MS.gene09051:CDS
GGGAGGTAAGAAGAAGAACA+AGG	0.606219	4.2:-45563372	MS.gene09051:CDS
ATTTCCATACCCAAAACCAA+AGG	0.607513	4.2:+45563280	None:intergenic
ATGGAAATGTAAATGTTGAA+GGG	0.608459	4.2:-45563265	MS.gene09051:CDS
AAGAAGGAAGAGAACAACAA+AGG	0.625603	4.2:-45564345	None:intergenic
AAATTGGTACTACACTGTCA+AGG	0.625937	4.2:-45563752	MS.gene09051:CDS
TCATCACTAAACATTTGTGG+TGG	0.630320	4.2:+45563188	None:intergenic
AAGAAAGACAAGGAAGGTGG+TGG	0.634788	4.2:-45563431	MS.gene09051:CDS
GGTAATAACAATGAAGCAGG+AGG	0.639502	4.2:-45563338	MS.gene09051:CDS
CCAAAGAAAGACAAGGAAGG+TGG	0.648516	4.2:-45563434	MS.gene09051:CDS
TGTGACTGTGAAGGGTACAA+TGG	0.654271	4.2:-45563519	MS.gene09051:CDS
CAACCAAAGAAAGACAAGGA+AGG	0.655515	4.2:-45563437	MS.gene09051:CDS
AGTTCAACCAAAGAAAGACA+AGG	0.673352	4.2:-45563441	MS.gene09051:CDS

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!!!	AATGATTTGTTTTAATTTTT+TGG	-	chr4.2:45563672-45563691	MS.gene09051:intron	10.0%
!!	AAAATTGTTATGAAAACTAA+AGG	-	chr4.2:45563789-45563808	MS.gene09051:intron	15.0%
!!	TAGATAAAAACAAGTTATTA+AGG	+	chr4.2:45563331-45563350	None:intergenic	15.0%
!!!	TTTTTTTGTGTGTTTTTTTA+AGG	-	chr4.2:45563392-45563411	MS.gene09051:CDS	15.0%
!!	AAACACACAAAAAAAAAACA+TGG	+	chr4.2:45563387-45563406	None:intergenic	20.0%
!!	TATGAATATTTAACATCTCT+TGG	+	chr4.2:45564280-45564299	None:intergenic	20.0%
!!!	TTTTCTTTCTTTCTATGATT+TGG	-	chr4.2:45563852-45563871	MS.gene09051:intron	20.0%
!	ATGGAAATGTAAATGTTGAA+GGG	-	chr4.2:45564234-45564253	MS.gene09051:intron	25.0%
!	GAAAAAATGTATAGAAACAG+AGG	+	chr4.2:45563285-45563304	None:intergenic	25.0%
!	GAAAAATGAAGACAAAAAAG+AGG	-	chr4.2:45563598-45563617	MS.gene09051:intron	25.0%
!	TATGGAAATGTAAATGTTGA+AGG	-	chr4.2:45564233-45564252	MS.gene09051:intron	25.0%
!!	AAGGATGTATTGATAAGATT+GGG	-	chr4.2:45563766-45563785	MS.gene09051:CDS	25.0%
!!!	AATGAAAGTTGATAAAGAGA+AGG	-	chr4.2:45563953-45563972	MS.gene09051:CDS	25.0%
!!!	AGTTAAGATAATGGAGTATA+TGG	-	chr4.2:45564187-45564206	MS.gene09051:intron	25.0%
!!!	TTCTCATCAGATTTTTTGTT+TGG	+	chr4.2:45563578-45563597	None:intergenic	25.0%
	AAAGTTTATATGCATTGCGA+AGG	-	chr4.2:45563199-45563218	MS.gene09051:CDS	30.0%
	ATTTATCACAGAAGCTTAAG+AGG	-	chr4.2:45564024-45564043	MS.gene09051:CDS	30.0%
	TACCAATTTCAAAACAGAAG+TGG	+	chr4.2:45563736-45563755	None:intergenic	30.0%
	TTCTCATCACTAAACATTTG+TGG	+	chr4.2:45564317-45564336	None:intergenic	30.0%
!	CAAGGATGTATTGATAAGAT+TGG	-	chr4.2:45563765-45563784	MS.gene09051:CDS	30.0%
!!	CATATGATTTTGATGTGTGT+AGG	-	chr4.2:45563921-45563940	MS.gene09051:CDS	30.0%
!!	TTCTTGTTGTTATCCTTCTT+GGG	+	chr4.2:45563545-45563564	None:intergenic	30.0%
!!!	CTATACATTTTTTCCGATCT+GGG	-	chr4.2:45563291-45563310	MS.gene09051:CDS	30.0%
!!!	TACCACTTCTGTTTTGAAAT+TGG	-	chr4.2:45563731-45563750	MS.gene09051:CDS	30.0%
!!!	TCTATACATTTTTTCCGATC+TGG	-	chr4.2:45563290-45563309	MS.gene09051:CDS	30.0%
	AAACACCTTAACAGCATCAA+AGG	-	chr4.2:45563241-45563260	MS.gene09051:CDS	35.0%
	AAATTGGTACTACACTGTCA+AGG	-	chr4.2:45563747-45563766	MS.gene09051:CDS	35.0%
	ACATTGATGAAAACCCAGAT+CGG	+	chr4.2:45563307-45563326	None:intergenic	35.0%
	AGGAGGAGAAGTTAAGATAA+TGG	-	chr4.2:45564178-45564197	MS.gene09051:intron	35.0%
	AGTTCAACCAAAGAAAGACA+AGG	-	chr4.2:45564058-45564077	MS.gene09051:CDS	35.0%
	ATTTCCATACCCAAAACCAA+AGG	+	chr4.2:45564222-45564241	None:intergenic	35.0%
	CAAGAAGGATAACAACAAGA+AGG	-	chr4.2:45563544-45563563	MS.gene09051:CDS	35.0%
	GATGGTAATAACAATGAAGC+AGG	-	chr4.2:45564158-45564177	MS.gene09051:intron	35.0%
	TATATGGTTCAACAACCCTT+TGG	-	chr4.2:45564203-45564222	MS.gene09051:intron	35.0%
	TCATCACTAAACATTTGTGG+TGG	+	chr4.2:45564314-45564333	None:intergenic	35.0%
	TGAAACCTTTGATGCTGTTA+AGG	+	chr4.2:45563249-45563268	None:intergenic	35.0%
	TTTCCATACCCAAAACCAAA+GGG	+	chr4.2:45564221-45564240	None:intergenic	35.0%
!	AAGATTGTCTCTCAGTTTTG+TGG	+	chr4.2:45563480-45563499	None:intergenic	35.0%
!	TTTGATGCTGTTAAGGTGTT+TGG	+	chr4.2:45563242-45563261	None:intergenic	35.0%
!!	AGATTGTCTCTCAGTTTTGT+GGG	+	chr4.2:45563479-45563498	None:intergenic	35.0%
!!	CTTCTTGTTGTTATCCTTCT+TGG	+	chr4.2:45563546-45563565	None:intergenic	35.0%
!!!	TTCAACAACCCTTTGGTTTT+GGG	-	chr4.2:45564210-45564229	MS.gene09051:intron	35.0%
	AAGGACAATGTGACTGTGAA+GGG	-	chr4.2:45563972-45563991	MS.gene09051:CDS	40.0%
	AGGTAAGAAGAAGAACAAGG+GGG	-	chr4.2:45564130-45564149	MS.gene09051:intron	40.0%
	ATCACAGAAGCTTAAGAGGA+AGG	-	chr4.2:45564028-45564047	MS.gene09051:CDS	40.0%
	CAAAGGCAAAAACAACGCTA+CGG	-	chr4.2:45563171-45563190	MS.gene09051:CDS	40.0%
	CAACCAAAGAAAGACAAGGA+AGG	-	chr4.2:45564062-45564081	MS.gene09051:CDS	40.0%
	CACATGACAATGCAAGCATT+AGG	+	chr4.2:45564341-45564360	None:intergenic	40.0%
	GAGGTAAGAAGAAGAACAAG+GGG	-	chr4.2:45564129-45564148	MS.gene09051:intron	40.0%
	GGAGGTAAGAAGAAGAACAA+GGG	-	chr4.2:45564128-45564147	MS.gene09051:intron	40.0%
	GGTAATAACAATGAAGCAGG+AGG	-	chr4.2:45564161-45564180	MS.gene09051:intron	40.0%
	TTGTTATCCTTCTTGGGAAG+TGG	+	chr4.2:45563539-45563558	None:intergenic	40.0%
!!	GATTGTCTCTCAGTTTTGTG+GGG	+	chr4.2:45563478-45563497	None:intergenic	40.0%
!!	GTTCAACAACCCTTTGGTTT+TGG	-	chr4.2:45564209-45564228	MS.gene09051:intron	40.0%
	AAGAAAGACAAGGAAGGTGG+TGG	-	chr4.2:45564068-45564087	MS.gene09051:CDS	45.0%
	AAGGATGGAAATGAAGGAGG+AGG	-	chr4.2:45564101-45564120	MS.gene09051:intron	45.0%
	ATGGAAATGAAGGAGGAGGT+GGG	-	chr4.2:45564105-45564124	MS.gene09051:intron	45.0%
	CATTTCACCACTTCCCAAGA+AGG	-	chr4.2:45563529-45563548	MS.gene09051:CDS	45.0%
	CCAAAGAAAGACAAGGAAGG+TGG	-	chr4.2:45564065-45564084	MS.gene09051:CDS	45.0%
	CCACCTTCCTTGTCTTTCTT+TGG	+	chr4.2:45564068-45564087	None:intergenic	45.0%
	GAAGCTTAAGAGGAAGGTTG+AGG	-	chr4.2:45564034-45564053	MS.gene09051:CDS	45.0%
	GAAGGACAATGTGACTGTGA+AGG	-	chr4.2:45563971-45563990	MS.gene09051:CDS	45.0%
	GAGAAGGATGGAAATGAAGG+AGG	-	chr4.2:45564098-45564117	MS.gene09051:intron	45.0%
	GGGAGGTAAGAAGAAGAACA+AGG	-	chr4.2:45564127-45564146	MS.gene09051:intron	45.0%
	GGTAAGAAGAAGAACAAGGG+GGG	-	chr4.2:45564131-45564150	MS.gene09051:intron	45.0%
	GGTGAGAAGGATGGAAATGA+AGG	-	chr4.2:45564095-45564114	MS.gene09051:intron	45.0%
	GTGAAAGCAGAGAGTGAAAC+CGG	-	chr4.2:45563425-45563444	MS.gene09051:CDS	45.0%
!	TGTGACTGTGAAGGGTACAA+TGG	-	chr4.2:45563980-45563999	MS.gene09051:CDS	45.0%
!	TTTTGTGGGGTCCACATTTC+CGG	+	chr4.2:45563465-45563484	None:intergenic	45.0%
!!!	CAACCCTTTGGTTTTGGGTA+TGG	-	chr4.2:45564215-45564234	MS.gene09051:intron	45.0%
	AAGAAGAAGAACAAGGGGGG+TGG	-	chr4.2:45564134-45564153	MS.gene09051:intron	50.0%
	ACCGGAAAAGTAACCGTCAC+CGG	-	chr4.2:45563443-45563462	MS.gene09051:CDS	50.0%
	AGTAACCGTCACCGGAAATG+TGG	-	chr4.2:45563451-45563470	MS.gene09051:CDS	50.0%
	GATGGAAATGAAGGAGGAGG+TGG	-	chr4.2:45564104-45564123	MS.gene09051:intron	50.0%
	TGGAAATGAAGGAGGAGGTG+GGG	-	chr4.2:45564106-45564125	MS.gene09051:intron	50.0%
!	AAAGACAAGGAAGGTGGTGG+TGG	-	chr4.2:45564071-45564090	MS.gene09051:CDS	50.0%
!!!	TCCGGTGACGGTTACTTTTC+CGG	+	chr4.2:45563447-45563466	None:intergenic	50.0%
	AAGAACAAGGGGGGTGGAGA+TGG	-	chr4.2:45564140-45564159	MS.gene09051:intron	55.0%
	GGAAATGAAGGAGGAGGTGG+GGG	-	chr4.2:45564107-45564126	MS.gene09051:intron	55.0%
	AATGAAGGAGGAGGTGGGGG+AGG	-	chr4.2:45564110-45564129	MS.gene09051:intron	60.0%
	GGGGTCCACATTTCCGGTGA+CGG	+	chr4.2:45563459-45563478	None:intergenic	60.0%
!!	AGGTGGTGGTGGTGGTGAGA+AGG	-	chr4.2:45564082-45564101	MS.gene09051:CDS	60.0%
!!	GACAAGGAAGGTGGTGGTGG+TGG	-	chr4.2:45564074-45564093	MS.gene09051:CDS	60.0%
!!	GGTGGTGGTGGTGAGAAGGA+TGG	-	chr4.2:45564086-45564105	MS.gene09051:CDS	60.0%

Chromosome	Type	Strat	End	Strand	Name
chr4.2	gene	45563160	45564361	45563160	ID=MS.gene09051
chr4.2	mRNA	45563160	45564361	45563160	ID=MS.gene09051.t1;Parent=MS.gene09051
chr4.2	exon	45564259	45564361	45564259	ID=MS.gene09051.t1.exon1;Parent=MS.gene09051.t1
chr4.2	CDS	45564259	45564361	45564259	ID=cds.MS.gene09051.t1;Parent=MS.gene09051.t1
chr4.2	exon	45563902	45564107	45563902	ID=MS.gene09051.t1.exon2;Parent=MS.gene09051.t1
chr4.2	CDS	45563902	45564107	45563902	ID=cds.MS.gene09051.t1;Parent=MS.gene09051.t1
chr4.2	exon	45563711	45563795	45563711	ID=MS.gene09051.t1.exon3;Parent=MS.gene09051.t1
chr4.2	CDS	45563711	45563795	45563711	ID=cds.MS.gene09051.t1;Parent=MS.gene09051.t1
chr4.2	exon	45563160	45563578	45563160	ID=MS.gene09051.t1.exon4;Parent=MS.gene09051.t1
chr4.2	CDS	45563160	45563578	45563160	ID=cds.MS.gene09051.t1;Parent=MS.gene09051.t1

Gene Sequence

>MS.gene09051

GAAGAGAACAACAAAGGCAAAAACAACGCTACGGTTTTGAAAGTTTATATGCATTGCGAAGGTTGCGCTAACAAAGTCACCAAACACCTTAACAGCATCAAAGGTTTCATTTTTCTCACACTCCTCTGTTTCTATACATTTTTTCCGATCTGGGTTTTCATCAATGTTCCTTAATAACTTGTTTTTATCTATGAATTTGTTTTTCAATCGTTGAAAATGAACAACCATGTTTTTTTTTTGTGTGTTTTTTTAAGGTGTTGATACTGTGAAAGCAGAGAGTGAAACCGGAAAAGTAACCGTCACCGGAAATGTGGACCCCACAAAACTGAGAGACAATCTTGCTGAGAAGATAAAGAAGAAAGTTGAACTCATTTCACCACTTCCCAAGAAGGATAACAACAAGAAGGAAAATGAACCAAACAAAAAATCTGATGAGAAGAAAAATGAAGACAAAAAAGAGGTTCTGTTCTTTCTAATTTGTTTTTTGTTTCTATTAATTTATTTGTTTATTTAATGATTTGTTTTAATTTTTTGGTTTTTATTCTAATTTTTGTTTAATGTAACAGTCAATTACCACTTCTGTTTTGAAATTGGTACTACACTGTCAAGGATGTATTGATAAGATTGGGAAAATTGTTATGAAAACTAAAGGTGAGTTTTTATTTTTCAATATTAAAAAAATGATTTTATTTTTTTCTTTCTTTCTATGATTTGGTGATTTTGATATGATTTATATTAAGCATATGATTTTGATGTTGAAGCATATGATTTTGATGTGTGTAGGAGTGCTTGAAATGAAAGTTGATAAAGAGAAGGACAATGTGACTGTGAAGGGTACAATGGATGTGAAAAAGCTAGTTGAGAATTTATCACAGAAGCTTAAGAGGAAGGTTGAGGTAGTTCAACCAAAGAAAGACAAGGAAGGTGGTGGTGGTGGTGAGAAGGATGGAAATGAAGGAGGAGGTGGGGGAGGTAAGAAGAAGAACAAGGGGGGTGGAGATGGTAATAACAATGAAGCAGGAGGAGAAGTTAAGATAATGGAGTATATGGTTCAACAACCCTTTGGTTTTGGGTATGGAAATGTAAATGTTGAAGGGTATAATGCTGCACAAGTTTACCAAGAGATGTTAAATATTCATATGCAAACACAACCACCACAAATGTTTAGTGATGAGAATCCTAATGCTTGCATTGTCATGTGA

Protein sequence

>MS.gene09051.t1

EENNKGKNNATVLKVYMHCEGCANKVTKHLNSIKGVDTVKAESETGKVTVTGNVDPTKLRDNLAEKIKKKVELISPLPKKDNNKKENEPNKKSDEKKNEDKKESITTSVLKLVLHCQGCIDKIGKIVMKTKGVLEMKVDKEKDNVTVKGTMDVKKLVENLSQKLKRKVEVVQPKKDKEGGGGGEKDGNEGGGGGGKKKNKGGGDGNNNEAGGEVKIMEYMVQQPFGFGYGNVNVEGYNAAQVYQEMLNIHMQTQPPQMFSDENPNACIVM