Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene45609.t1 | XP_024636092.1 | 96.2 | 524 | 16 | 3 | 1 | 522 | 1 | 522 | 1.50E-280 | 974.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene45609.t1 | Q38914 | 52.2 | 487 | 145 | 12 | 67 | 524 | 65 | 492 | 1.4e-109 | 398.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene45609.t1 | A0A396IBY7 | 96.2 | 524 | 16 | 3 | 1 | 522 | 1 | 522 | 1.1e-280 | 974.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene45609.t1 | TF | AP2/ERF-AP2 |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049142 | MS.gene45609 | 0.846165 | 2.58E-59 | -1.69E-46 |
| MS.gene049159 | MS.gene45609 | 0.808948 | 2.41E-50 | -1.69E-46 |
| MS.gene049254 | MS.gene45609 | 0.815189 | 1.05E-51 | -1.69E-46 |
| MS.gene049350 | MS.gene45609 | 0.80284 | 4.63E-49 | -1.69E-46 |
| MS.gene049404 | MS.gene45609 | 0.801883 | 7.30E-49 | -1.69E-46 |
| MS.gene049501 | MS.gene45609 | 0.831265 | 1.84E-55 | -1.69E-46 |
| MS.gene049711 | MS.gene45609 | 0.80201 | 6.87E-49 | -1.69E-46 |
| MS.gene049824 | MS.gene45609 | 0.808814 | 2.57E-50 | -1.69E-46 |
| MS.gene049825 | MS.gene45609 | 0.818501 | 1.90E-52 | -1.69E-46 |
| MS.gene049850 | MS.gene45609 | 0.850478 | 1.66E-60 | -1.69E-46 |
| MS.gene049873 | MS.gene45609 | 0.810998 | 8.72E-51 | -1.69E-46 |
| MS.gene050156 | MS.gene45609 | 0.835425 | 1.69E-56 | -1.69E-46 |
| MS.gene050201 | MS.gene45609 | 0.805823 | 1.11E-49 | -1.69E-46 |
| MS.gene05045 | MS.gene45609 | 0.801034 | 1.09E-48 | -1.69E-46 |
| MS.gene050799 | MS.gene45609 | 0.806377 | 8.47E-50 | -1.69E-46 |
| MS.gene050807 | MS.gene45609 | 0.820042 | 8.45E-53 | -1.69E-46 |
| MS.gene050844 | MS.gene45609 | 0.809732 | 1.64E-50 | -1.69E-46 |
| MS.gene051247 | MS.gene45609 | 0.855557 | 5.82E-62 | -1.69E-46 |
| MS.gene051265 | MS.gene45609 | 0.813811 | 2.12E-51 | -1.69E-46 |
| MS.gene051388 | MS.gene45609 | 0.816168 | 6.36E-52 | -1.69E-46 |
| MS.gene051700 | MS.gene45609 | 0.821591 | 3.72E-53 | -1.69E-46 |
| MS.gene051705 | MS.gene45609 | 0.805204 | 1.49E-49 | -1.69E-46 |
| MS.gene051719 | MS.gene45609 | 0.873425 | 1.49E-67 | -1.69E-46 |
| MS.gene051720 | MS.gene45609 | 0.86765 | 1.17E-65 | -1.69E-46 |
| MS.gene051744 | MS.gene45609 | 0.822983 | 1.77E-53 | -1.69E-46 |
| MS.gene051957 | MS.gene45609 | 0.81997 | 8.78E-53 | -1.69E-46 |
| MS.gene052000 | MS.gene45609 | 0.805995 | 1.02E-49 | -1.69E-46 |
| MS.gene052020 | MS.gene45609 | 0.825612 | 4.26E-54 | -1.69E-46 |
| MS.gene052133 | MS.gene45609 | 0.801715 | 7.90E-49 | -1.69E-46 |
| MS.gene052190 | MS.gene45609 | 0.803412 | 3.53E-49 | -1.69E-46 |
| MS.gene052323 | MS.gene45609 | 0.805055 | 1.61E-49 | -1.69E-46 |
| MS.gene052463 | MS.gene45609 | 0.802684 | 4.99E-49 | -1.69E-46 |
| MS.gene052516 | MS.gene45609 | 0.844947 | 5.51E-59 | -1.69E-46 |
| MS.gene052519 | MS.gene45609 | 0.844676 | 6.52E-59 | -1.69E-46 |
| MS.gene052582 | MS.gene45609 | 0.824974 | 6.04E-54 | -1.69E-46 |
| MS.gene052584 | MS.gene45609 | 0.830334 | 3.11E-55 | -1.69E-46 |
| MS.gene052611 | MS.gene45609 | 0.843929 | 1.04E-58 | -1.69E-46 |
| MS.gene052613 | MS.gene45609 | 0.81082 | 9.53E-51 | -1.69E-46 |
| MS.gene052773 | MS.gene45609 | 0.854344 | 1.31E-61 | -1.69E-46 |
| MS.gene052863 | MS.gene45609 | 0.84519 | 4.74E-59 | -1.69E-46 |
| MS.gene052896 | MS.gene45609 | 0.843898 | 1.06E-58 | -1.69E-46 |
| MS.gene053008 | MS.gene45609 | 0.824756 | 6.79E-54 | -1.69E-46 |
| MS.gene053054 | MS.gene45609 | -0.805141 | 1.54E-49 | -1.69E-46 |
| MS.gene053144 | MS.gene45609 | 0.817299 | 3.54E-52 | -1.69E-46 |
| MS.gene053221 | MS.gene45609 | 0.829792 | 4.22E-55 | -1.69E-46 |
| MS.gene053226 | MS.gene45609 | 0.851163 | 1.06E-60 | -1.69E-46 |
| MS.gene053331 | MS.gene45609 | 0.800395 | 1.47E-48 | -1.69E-46 |
| MS.gene053597 | MS.gene45609 | 0.802144 | 6.45E-49 | -1.69E-46 |
| MS.gene053599 | MS.gene45609 | 0.827024 | 1.97E-54 | -1.69E-46 |
| MS.gene053678 | MS.gene45609 | 0.806105 | 9.67E-50 | -1.69E-46 |
| MS.gene053883 | MS.gene45609 | 0.801976 | 6.98E-49 | -1.69E-46 |
| MS.gene053900 | MS.gene45609 | 0.833547 | 5.01E-56 | -1.69E-46 |
| MS.gene053998 | MS.gene45609 | 0.800303 | 1.54E-48 | -1.69E-46 |
| MS.gene05415 | MS.gene45609 | 0.808337 | 3.25E-50 | -1.69E-46 |
| MS.gene054236 | MS.gene45609 | 0.800051 | 1.73E-48 | -1.69E-46 |
| MS.gene05423 | MS.gene45609 | 0.806195 | 9.26E-50 | -1.69E-46 |
| MS.gene054467 | MS.gene45609 | 0.812675 | 3.76E-51 | -1.69E-46 |
| MS.gene054472 | MS.gene45609 | 0.811697 | 6.15E-51 | -1.69E-46 |
| MS.gene054584 | MS.gene45609 | 0.812397 | 4.33E-51 | -1.69E-46 |
| MS.gene05458 | MS.gene45609 | 0.812609 | 3.89E-51 | -1.69E-46 |
| MS.gene054651 | MS.gene45609 | 0.839096 | 1.94E-57 | -1.69E-46 |
| MS.gene05468 | MS.gene45609 | 0.807008 | 6.23E-50 | -1.69E-46 |
| MS.gene054775 | MS.gene45609 | 0.835703 | 1.44E-56 | -1.69E-46 |
| MS.gene054991 | MS.gene45609 | 0.801833 | 7.47E-49 | -1.69E-46 |
| MS.gene055227 | MS.gene45609 | 0.804082 | 2.56E-49 | -1.69E-46 |
| MS.gene055357 | MS.gene45609 | 0.8118 | 5.84E-51 | -1.69E-46 |
| MS.gene055465 | MS.gene45609 | 0.837676 | 4.52E-57 | -1.69E-46 |
| MS.gene055466 | MS.gene45609 | 0.847599 | 1.04E-59 | -1.69E-46 |
| MS.gene055468 | MS.gene45609 | 0.833095 | 6.49E-56 | -1.69E-46 |
| MS.gene055512 | MS.gene45609 | 0.821802 | 3.33E-53 | -1.69E-46 |
| MS.gene055537 | MS.gene45609 | 0.810632 | 1.05E-50 | -1.69E-46 |
| MS.gene055580 | MS.gene45609 | -0.816649 | 4.96E-52 | -1.69E-46 |
| MS.gene055778 | MS.gene45609 | 0.819639 | 1.04E-52 | -1.69E-46 |
| MS.gene055818 | MS.gene45609 | 0.849342 | 3.44E-60 | -1.69E-46 |
| MS.gene055890 | MS.gene45609 | 0.81151 | 6.75E-51 | -1.69E-46 |
| MS.gene055891 | MS.gene45609 | 0.807173 | 5.75E-50 | -1.69E-46 |
| MS.gene055926 | MS.gene45609 | 0.814344 | 1.62E-51 | -1.69E-46 |
| MS.gene056043 | MS.gene45609 | -0.800374 | 1.49E-48 | -1.69E-46 |
| MS.gene05604 | MS.gene45609 | 0.821614 | 3.68E-53 | -1.69E-46 |
| MS.gene056050 | MS.gene45609 | 0.811926 | 5.48E-51 | -1.69E-46 |
| MS.gene056173 | MS.gene45609 | 0.826545 | 2.56E-54 | -1.69E-46 |
| MS.gene056174 | MS.gene45609 | 0.80796 | 3.91E-50 | -1.69E-46 |
| MS.gene056215 | MS.gene45609 | 0.806356 | 8.56E-50 | -1.69E-46 |
| MS.gene056308 | MS.gene45609 | 0.804165 | 2.46E-49 | -1.69E-46 |
| MS.gene056366 | MS.gene45609 | 0.835981 | 1.22E-56 | -1.69E-46 |
| MS.gene056553 | MS.gene45609 | 0.812326 | 4.49E-51 | -1.69E-46 |
| MS.gene056595 | MS.gene45609 | 0.827832 | 1.26E-54 | -1.69E-46 |
| MS.gene057026 | MS.gene45609 | 0.815262 | 1.01E-51 | -1.69E-46 |
| MS.gene057060 | MS.gene45609 | 0.817142 | 3.84E-52 | -1.69E-46 |
| MS.gene057444 | MS.gene45609 | 0.814149 | 1.78E-51 | -1.69E-46 |
| MS.gene057598 | MS.gene45609 | 0.802154 | 6.42E-49 | -1.69E-46 |
| MS.gene057693 | MS.gene45609 | 0.803252 | 3.81E-49 | -1.69E-46 |
| MS.gene057915 | MS.gene45609 | 0.830346 | 3.09E-55 | -1.69E-46 |
| MS.gene058037 | MS.gene45609 | 0.836239 | 1.05E-56 | -1.69E-46 |
| MS.gene058339 | MS.gene45609 | 0.806465 | 8.12E-50 | -1.69E-46 |
| MS.gene058625 | MS.gene45609 | 0.854678 | 1.05E-61 | -1.69E-46 |
| MS.gene058636 | MS.gene45609 | 0.82607 | 3.32E-54 | -1.69E-46 |
| MS.gene058829 | MS.gene45609 | 0.840966 | 6.32E-58 | -1.69E-46 |
| MS.gene058852 | MS.gene45609 | 0.815406 | 9.40E-52 | -1.69E-46 |
| MS.gene058979 | MS.gene45609 | 0.815158 | 1.07E-51 | -1.69E-46 |
| MS.gene059015 | MS.gene45609 | 0.832366 | 9.85E-56 | -1.69E-46 |
| MS.gene059272 | MS.gene45609 | 0.812713 | 3.69E-51 | -1.69E-46 |
| MS.gene05954 | MS.gene45609 | 0.830372 | 3.05E-55 | -1.69E-46 |
| MS.gene059570 | MS.gene45609 | 0.801396 | 9.19E-49 | -1.69E-46 |
| MS.gene059625 | MS.gene45609 | 0.829505 | 4.96E-55 | -1.69E-46 |
| MS.gene059937 | MS.gene45609 | 0.808883 | 2.49E-50 | -1.69E-46 |
| MS.gene060322 | MS.gene45609 | 0.812756 | 3.61E-51 | -1.69E-46 |
| MS.gene060429 | MS.gene45609 | 0.812074 | 5.09E-51 | -1.69E-46 |
| MS.gene060519 | MS.gene45609 | 0.800186 | 1.62E-48 | -1.69E-46 |
| MS.gene060572 | MS.gene45609 | 0.819893 | 9.14E-53 | -1.69E-46 |
| MS.gene060587 | MS.gene45609 | 0.835699 | 1.44E-56 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene45609.t1 | MTR_4g097520 | 94.084 | 524 | 24 | 4 | 1 | 522 | 1 | 519 | 0.0 | 976 |
| MS.gene45609.t1 | MTR_3g103460 | 58.429 | 522 | 168 | 18 | 1 | 499 | 1 | 496 | 3.53e-173 | 504 |
| MS.gene45609.t1 | MTR_1g017400 | 55.747 | 522 | 184 | 15 | 1 | 499 | 1 | 498 | 4.12e-165 | 484 |
| MS.gene45609.t1 | MTR_5g015070 | 51.005 | 547 | 154 | 20 | 1 | 523 | 1 | 457 | 2.40e-153 | 450 |
| MS.gene45609.t1 | MTR_8g020510 | 46.061 | 495 | 185 | 13 | 18 | 496 | 3 | 431 | 2.98e-119 | 363 |
| MS.gene45609.t1 | MTR_4g127930 | 72.018 | 218 | 61 | 0 | 294 | 511 | 143 | 360 | 4.41e-110 | 338 |
| MS.gene45609.t1 | MTR_4g065370 | 67.635 | 241 | 58 | 3 | 248 | 488 | 121 | 341 | 4.41e-107 | 331 |
| MS.gene45609.t1 | MTR_7g080460 | 74.419 | 215 | 46 | 1 | 299 | 504 | 248 | 462 | 7.72e-107 | 335 |
| MS.gene45609.t1 | MTR_2g098180 | 72.642 | 212 | 57 | 1 | 301 | 511 | 158 | 369 | 5.15e-105 | 325 |
| MS.gene45609.t1 | MTR_8g068510 | 53.947 | 304 | 109 | 8 | 240 | 535 | 69 | 349 | 7.76e-95 | 295 |
| MS.gene45609.t1 | MTR_5g031880 | 77.419 | 186 | 39 | 1 | 301 | 486 | 215 | 397 | 6.65e-89 | 283 |
| MS.gene45609.t1 | MTR_4g130270 | 67.598 | 179 | 56 | 1 | 301 | 477 | 36 | 214 | 3.86e-81 | 258 |
| MS.gene45609.t1 | MTR_7g009410 | 61.290 | 186 | 68 | 2 | 292 | 477 | 48 | 229 | 1.01e-71 | 234 |
| MS.gene45609.t1 | MTR_2g460730 | 60.697 | 201 | 64 | 3 | 279 | 477 | 24 | 211 | 3.49e-71 | 232 |
| MS.gene45609.t1 | MTR_6g011490 | 61.497 | 187 | 69 | 1 | 291 | 477 | 42 | 225 | 2.77e-70 | 230 |
| MS.gene45609.t1 | MTR_8g044070 | 57.500 | 200 | 75 | 3 | 285 | 477 | 23 | 219 | 3.50e-68 | 226 |
| MS.gene45609.t1 | MTR_8g468920 | 50.607 | 247 | 117 | 3 | 263 | 509 | 23 | 264 | 4.94e-68 | 225 |
| MS.gene45609.t1 | MTR_4g007770 | 66.864 | 169 | 53 | 1 | 309 | 477 | 35 | 200 | 1.66e-67 | 221 |
| MS.gene45609.t1 | MTR_8g044040 | 62.130 | 169 | 61 | 1 | 309 | 477 | 55 | 220 | 4.07e-62 | 209 |
| MS.gene45609.t1 | MTR_4g094868 | 54.819 | 166 | 64 | 3 | 313 | 478 | 176 | 330 | 1.32e-44 | 165 |
| MS.gene45609.t1 | MTR_4g094868 | 54.819 | 166 | 64 | 3 | 313 | 478 | 176 | 330 | 1.43e-44 | 165 |
| MS.gene45609.t1 | MTR_5g016810 | 54.819 | 166 | 64 | 3 | 313 | 478 | 152 | 306 | 3.74e-44 | 164 |
| MS.gene45609.t1 | MTR_4g061200 | 48.020 | 202 | 84 | 5 | 287 | 478 | 95 | 285 | 8.11e-43 | 157 |
| MS.gene45609.t1 | MTR_7g100590 | 42.616 | 237 | 114 | 6 | 257 | 493 | 93 | 307 | 1.50e-42 | 159 |
| MS.gene45609.t1 | MTR_4g061200 | 48.020 | 202 | 84 | 5 | 287 | 478 | 95 | 285 | 4.81e-42 | 157 |
| MS.gene45609.t1 | MTR_5g016810 | 52.326 | 172 | 65 | 4 | 313 | 478 | 152 | 312 | 7.42e-42 | 157 |
| MS.gene45609.t1 | MTR_2g093060 | 52.410 | 166 | 68 | 3 | 313 | 478 | 134 | 288 | 8.05e-42 | 156 |
| MS.gene45609.t1 | MTR_2g093060 | 52.410 | 166 | 68 | 3 | 313 | 478 | 134 | 288 | 8.61e-42 | 156 |
| MS.gene45609.t1 | MTR_7g091390 | 56.738 | 141 | 53 | 2 | 296 | 436 | 43 | 175 | 1.15e-37 | 144 |
| MS.gene45609.t1 | MTR_4g094868 | 55.556 | 135 | 59 | 1 | 344 | 478 | 41 | 174 | 9.04e-36 | 137 |
| MS.gene45609.t1 | MTR_4g061200 | 45.050 | 202 | 75 | 7 | 287 | 478 | 95 | 270 | 6.02e-35 | 135 |
| MS.gene45609.t1 | MTR_4g061200 | 45.050 | 202 | 75 | 7 | 287 | 478 | 95 | 270 | 4.33e-34 | 134 |
| MS.gene45609.t1 | MTR_2g093060 | 48.193 | 166 | 60 | 4 | 313 | 478 | 134 | 273 | 1.76e-33 | 133 |
| MS.gene45609.t1 | MTR_7g061190 | 49.254 | 134 | 67 | 1 | 345 | 478 | 3 | 135 | 8.13e-30 | 115 |
| MS.gene45609.t1 | MTR_7g091390 | 63.333 | 90 | 28 | 1 | 347 | 436 | 3 | 87 | 8.23e-24 | 102 |
| MS.gene45609.t1 | MTR_1g049140 | 41.667 | 144 | 73 | 3 | 289 | 432 | 113 | 245 | 1.53e-20 | 91.7 |
| MS.gene45609.t1 | MTR_1g049140 | 41.667 | 144 | 73 | 3 | 289 | 432 | 113 | 245 | 1.82e-20 | 94.0 |
| MS.gene45609.t1 | MTR_1g049140 | 41.667 | 144 | 73 | 3 | 289 | 432 | 113 | 245 | 5.33e-20 | 92.0 |
| MS.gene45609.t1 | MTR_3g090510 | 46.226 | 106 | 56 | 1 | 351 | 456 | 163 | 267 | 1.45e-17 | 85.1 |
| MS.gene45609.t1 | MTR_7g060560 | 43.396 | 106 | 58 | 2 | 351 | 456 | 156 | 259 | 3.53e-14 | 74.7 |
| MS.gene45609.t1 | MTR_1g028560 | 44.318 | 88 | 42 | 2 | 400 | 481 | 99 | 185 | 1.59e-11 | 66.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene45609.t1 | AT4G37750 | 52.328 | 537 | 166 | 16 | 1 | 507 | 1 | 477 | 4.62e-154 | 452 |
| MS.gene45609.t1 | AT1G72570 | 70.902 | 244 | 70 | 1 | 253 | 495 | 162 | 405 | 1.72e-118 | 356 |
| MS.gene45609.t1 | AT5G57390 | 82.447 | 188 | 32 | 1 | 301 | 488 | 73 | 259 | 4.07e-110 | 335 |
| MS.gene45609.t1 | AT1G51190 | 63.707 | 259 | 93 | 1 | 250 | 507 | 127 | 385 | 1.87e-109 | 338 |
| MS.gene45609.t1 | AT5G57390 | 82.447 | 188 | 32 | 1 | 301 | 488 | 191 | 377 | 4.95e-109 | 337 |
| MS.gene45609.t1 | AT3G20840 | 75.481 | 208 | 50 | 1 | 301 | 507 | 169 | 376 | 5.03e-108 | 335 |
| MS.gene45609.t1 | AT5G17430 | 69.565 | 230 | 68 | 1 | 301 | 530 | 136 | 363 | 2.21e-105 | 326 |
| MS.gene45609.t1 | AT5G17430 | 69.565 | 230 | 68 | 1 | 301 | 530 | 198 | 425 | 5.12e-105 | 327 |
| MS.gene45609.t1 | AT5G65510 | 68.545 | 213 | 67 | 0 | 286 | 498 | 146 | 358 | 6.04e-90 | 283 |
| MS.gene45609.t1 | AT5G65510 | 68.545 | 213 | 67 | 0 | 286 | 498 | 204 | 416 | 6.75e-90 | 285 |
| MS.gene45609.t1 | AT5G65510 | 68.545 | 213 | 67 | 0 | 286 | 498 | 204 | 416 | 6.75e-90 | 285 |
| MS.gene45609.t1 | AT5G10510 | 71.642 | 201 | 57 | 0 | 286 | 486 | 203 | 403 | 1.88e-88 | 283 |
| MS.gene45609.t1 | AT5G10510 | 71.642 | 201 | 57 | 0 | 286 | 486 | 203 | 403 | 1.88e-88 | 283 |
| MS.gene45609.t1 | AT5G10510 | 71.642 | 201 | 57 | 0 | 286 | 486 | 241 | 441 | 2.42e-88 | 284 |
| MS.gene45609.t1 | AT5G10510 | 71.642 | 201 | 57 | 0 | 286 | 486 | 241 | 441 | 2.42e-88 | 284 |
| MS.gene45609.t1 | AT5G10510 | 71.642 | 201 | 57 | 0 | 286 | 486 | 226 | 426 | 3.09e-88 | 283 |
| MS.gene45609.t1 | AT5G10510 | 70.149 | 201 | 57 | 1 | 286 | 486 | 203 | 400 | 5.52e-84 | 271 |
| MS.gene45609.t1 | AT5G10510 | 63.801 | 221 | 60 | 1 | 286 | 486 | 241 | 461 | 4.02e-81 | 265 |
| MS.gene45609.t1 | AT5G65510 | 71.429 | 161 | 46 | 0 | 286 | 446 | 146 | 306 | 3.00e-79 | 251 |
| MS.gene45609.t1 | AT3G54320 | 65.730 | 178 | 61 | 0 | 300 | 477 | 52 | 229 | 7.94e-70 | 231 |
| MS.gene45609.t1 | AT3G54320 | 65.730 | 178 | 61 | 0 | 300 | 477 | 52 | 229 | 1.00e-69 | 231 |
| MS.gene45609.t1 | AT1G79700 | 67.456 | 169 | 55 | 0 | 309 | 477 | 48 | 216 | 1.55e-63 | 210 |
| MS.gene45609.t1 | AT1G16060 | 66.474 | 173 | 58 | 0 | 305 | 477 | 50 | 222 | 2.84e-62 | 208 |
| MS.gene45609.t1 | AT1G79700 | 63.905 | 169 | 51 | 1 | 309 | 477 | 48 | 206 | 8.57e-57 | 192 |
| MS.gene45609.t1 | AT3G54320 | 70.229 | 131 | 39 | 0 | 347 | 477 | 33 | 163 | 3.15e-52 | 182 |
| MS.gene45609.t1 | AT3G54320 | 70.229 | 131 | 39 | 0 | 347 | 477 | 33 | 163 | 3.15e-52 | 182 |
| MS.gene45609.t1 | AT4G36920 | 43.902 | 246 | 107 | 5 | 236 | 478 | 68 | 285 | 5.10e-45 | 164 |
| MS.gene45609.t1 | AT4G36920 | 43.902 | 246 | 107 | 5 | 236 | 478 | 68 | 285 | 5.10e-45 | 164 |
| MS.gene45609.t1 | AT1G79700 | 67.939 | 131 | 42 | 0 | 347 | 477 | 10 | 140 | 8.07e-45 | 158 |
| MS.gene45609.t1 | AT5G67180 | 53.012 | 166 | 67 | 3 | 313 | 478 | 96 | 250 | 2.35e-44 | 159 |
| MS.gene45609.t1 | AT5G67180 | 50.568 | 176 | 76 | 3 | 313 | 488 | 96 | 260 | 3.82e-44 | 158 |
| MS.gene45609.t1 | AT5G67180 | 53.012 | 166 | 67 | 3 | 313 | 478 | 96 | 250 | 8.30e-44 | 159 |
| MS.gene45609.t1 | AT1G16060 | 67.669 | 133 | 43 | 0 | 345 | 477 | 20 | 152 | 1.06e-43 | 157 |
| MS.gene45609.t1 | AT1G79700 | 66.667 | 129 | 43 | 0 | 349 | 477 | 6 | 134 | 8.23e-43 | 153 |
| MS.gene45609.t1 | AT2G41710 | 58.571 | 140 | 53 | 1 | 296 | 435 | 53 | 187 | 4.98e-42 | 156 |
| MS.gene45609.t1 | AT2G41710 | 58.571 | 140 | 53 | 1 | 296 | 435 | 53 | 187 | 9.32e-42 | 156 |
| MS.gene45609.t1 | AT2G28550 | 51.515 | 165 | 69 | 3 | 313 | 477 | 153 | 306 | 4.12e-41 | 154 |
| MS.gene45609.t1 | AT2G41710 | 56.552 | 145 | 53 | 2 | 296 | 435 | 53 | 192 | 1.29e-39 | 149 |
| MS.gene45609.t1 | AT2G41710 | 46.857 | 175 | 53 | 2 | 296 | 435 | 53 | 222 | 2.96e-35 | 138 |
| MS.gene45609.t1 | AT5G67180 | 50.685 | 146 | 61 | 3 | 313 | 458 | 96 | 230 | 7.42e-35 | 132 |
| MS.gene45609.t1 | AT2G28550 | 51.064 | 141 | 58 | 3 | 313 | 453 | 153 | 282 | 2.21e-34 | 133 |
| MS.gene45609.t1 | AT2G28550 | 47.879 | 165 | 60 | 5 | 313 | 477 | 153 | 291 | 3.25e-33 | 132 |
| MS.gene45609.t1 | AT3G54320 | 71.591 | 88 | 25 | 0 | 390 | 477 | 1 | 88 | 1.83e-30 | 120 |
| MS.gene45609.t1 | AT2G28550 | 51.181 | 127 | 51 | 3 | 313 | 439 | 153 | 268 | 4.94e-30 | 119 |
| MS.gene45609.t1 | AT2G28550 | 51.181 | 127 | 51 | 3 | 313 | 439 | 153 | 268 | 4.94e-30 | 119 |
| MS.gene45609.t1 | AT1G16060 | 69.318 | 88 | 27 | 0 | 390 | 477 | 1 | 88 | 7.12e-30 | 117 |
| MS.gene45609.t1 | AT1G16060 | 69.318 | 88 | 27 | 0 | 390 | 477 | 1 | 88 | 7.12e-30 | 117 |
| MS.gene45609.t1 | AT1G16060 | 69.318 | 88 | 27 | 0 | 390 | 477 | 1 | 88 | 7.12e-30 | 117 |
| MS.gene45609.t1 | AT1G16060 | 69.318 | 88 | 27 | 0 | 390 | 477 | 1 | 88 | 7.12e-30 | 117 |
| MS.gene45609.t1 | AT2G39250 | 41.667 | 132 | 67 | 2 | 294 | 425 | 89 | 210 | 1.20e-27 | 111 |
| MS.gene45609.t1 | AT2G39250 | 37.931 | 116 | 66 | 3 | 385 | 496 | 76 | 189 | 5.74e-11 | 63.2 |
| MS.gene45609.t1 | AT2G39250 | 41.667 | 132 | 67 | 2 | 294 | 425 | 89 | 210 | 3.32e-27 | 112 |
| MS.gene45609.t1 | AT2G39250 | 37.931 | 116 | 66 | 3 | 385 | 496 | 76 | 189 | 7.98e-11 | 63.9 |
| MS.gene45609.t1 | AT5G60120 | 47.015 | 134 | 56 | 4 | 310 | 439 | 157 | 279 | 1.14e-23 | 103 |
| MS.gene45609.t1 | AT5G60120 | 47.015 | 134 | 56 | 4 | 310 | 439 | 157 | 279 | 1.14e-23 | 103 |
| MS.gene45609.t1 | AT5G60120 | 47.015 | 134 | 56 | 4 | 310 | 439 | 157 | 279 | 1.14e-23 | 103 |
| MS.gene45609.t1 | AT5G60120 | 47.015 | 134 | 56 | 4 | 310 | 439 | 157 | 279 | 1.69e-23 | 103 |
| MS.gene45609.t1 | AT5G60120 | 47.015 | 134 | 56 | 4 | 310 | 439 | 157 | 279 | 2.27e-23 | 103 |
| MS.gene45609.t1 | AT5G60120 | 47.015 | 134 | 56 | 4 | 310 | 439 | 157 | 279 | 2.59e-23 | 103 |
| MS.gene45609.t1 | AT3G54990 | 49.533 | 107 | 44 | 2 | 313 | 419 | 122 | 218 | 1.48e-22 | 97.4 |
| MS.gene45609.t1 | AT2G28550 | 45.038 | 131 | 56 | 3 | 347 | 477 | 11 | 125 | 7.10e-22 | 96.3 |
| MS.gene45609.t1 | AT3G54990 | 49.533 | 107 | 44 | 2 | 313 | 419 | 122 | 218 | 7.85e-22 | 97.4 |
| MS.gene45609.t1 | AT1G16060 | 75.439 | 57 | 14 | 0 | 421 | 477 | 10 | 66 | 7.31e-16 | 76.6 |
| MS.gene45609.t1 | AT1G36060 | 40.404 | 99 | 56 | 3 | 406 | 503 | 133 | 229 | 5.19e-12 | 67.4 |
| MS.gene45609.t1 | AT1G03800 | 53.226 | 62 | 28 | 1 | 416 | 477 | 53 | 113 | 8.86e-12 | 65.9 |
Find 90 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGAGATATGAAGCTCATTTA+TGG | 0.182841 | 8.4:-25090075 | MS.gene45609:CDS |
| TAGCTTGTTCAATGTTAAAA+AGG | 0.223979 | 8.4:+25088585 | None:intergenic |
| AGTAACTATTGTTACTCTTA+TGG | 0.248617 | 8.4:-25108266 | MS.gene45609:CDS |
| AATATTGGTTCAATGGCTTA+TGG | 0.295832 | 8.4:-25107645 | MS.gene45609:CDS |
| CTTCACCCATGTTTGATTGA+TGG | 0.312766 | 8.4:+25107787 | None:intergenic |
| ATAAGCCATTGAACCAATAT+TGG | 0.320548 | 8.4:+25107647 | None:intergenic |
| AACCATGAGTTGATGTTAGA+AGG | 0.326730 | 8.4:-25107843 | MS.gene45609:CDS |
| GTTCTTTCATTCTCAAATCT+TGG | 0.331942 | 8.4:+25088421 | None:intergenic |
| TCTCCTCAAATGAATAATAT+TGG | 0.338994 | 8.4:-25108392 | MS.gene45609:CDS |
| ACATTAACAATGAAAATAAC+TGG | 0.340271 | 8.4:-25108430 | MS.gene45609:CDS |
| GACTTAGTGGTTTAAAGAAC+TGG | 0.346259 | 8.4:-25107758 | MS.gene45609:CDS |
| ATCAGATTTGAGAGGCATAA+TGG | 0.354338 | 8.4:+25108205 | None:intergenic |
| TCAAGCAGCACTCAAGTATT+GGG | 0.359648 | 8.4:-25089509 | MS.gene45609:CDS |
| TGTAATAAAGATCTATATCT+TGG | 0.375013 | 8.4:-25089004 | MS.gene45609:CDS |
| AAAGAAGGCCAAAGCAGAAA+AGG | 0.375414 | 8.4:-25090037 | MS.gene45609:CDS |
| AGGAAATCTATTGATACTTC+TGG | 0.379082 | 8.4:-25090236 | MS.gene45609:CDS |
| TTGAAATTGTTGAACTTGTT+GGG | 0.379606 | 8.4:+25088453 | None:intergenic |
| TGATGGATCTCTTTATGAAA+TGG | 0.383299 | 8.4:-25108186 | MS.gene45609:CDS |
| AGCAGAAGCAAATTGTTCAT+AGG | 0.397213 | 8.4:-25090256 | MS.gene45609:CDS |
| TTAACATTGAACAAGCTAGA+AGG | 0.398796 | 8.4:-25088580 | MS.gene45609:CDS |
| TGATGAGACACAGTTTATCT+TGG | 0.408484 | 8.4:-25089729 | MS.gene45609:intron |
| GTTGAAATTGTTGAACTTGT+TGG | 0.412954 | 8.4:+25088452 | None:intergenic |
| GAGATATGAAGCTCATTTAT+GGG | 0.421132 | 8.4:-25090074 | MS.gene45609:CDS |
| AACAATGAAAATAACTGGTT+AGG | 0.421756 | 8.4:-25108425 | MS.gene45609:CDS |
| TGGATCCAATATTGGTTCAA+TGG | 0.423285 | 8.4:-25107652 | MS.gene45609:CDS |
| GGTGAAGATCATGGACTTAG+TGG | 0.425302 | 8.4:-25107771 | MS.gene45609:CDS |
| TCAGATTTGAGAGGCATAAT+GGG | 0.436788 | 8.4:+25108206 | None:intergenic |
| GGCAGATGGCAAGCTAGAAT+TGG | 0.438607 | 8.4:-25089037 | MS.gene45609:CDS |
| ATCAAGCAGCACTCAAGTAT+TGG | 0.444500 | 8.4:-25089510 | MS.gene45609:CDS |
| TTTATTAGGCAAAGGCGGAC+TGG | 0.445639 | 8.4:-25090097 | MS.gene45609:intron |
| ACACCAATATTATTCATTTG+AGG | 0.447211 | 8.4:+25108389 | None:intergenic |
| TATAATATGACAACTGTTGT+TGG | 0.447627 | 8.4:+25107880 | None:intergenic |
| GGTGAATGTGGATCCAATAT+TGG | 0.454709 | 8.4:-25107660 | MS.gene45609:CDS |
| GATATAATAAAATATGATGT+TGG | 0.456589 | 8.4:-25088629 | MS.gene45609:CDS |
| CCTTGTTACTCCTCTGTACA+TGG | 0.462036 | 8.4:+25089181 | None:intergenic |
| TTATTAGGCAAAGGCGGACT+GGG | 0.466578 | 8.4:-25090096 | MS.gene45609:intron |
| TGTTGAAAATTCTGTTGCTA+TGG | 0.468546 | 8.4:-25090309 | MS.gene45609:CDS |
| TCAAACATGGGTGAAGATCA+TGG | 0.480026 | 8.4:-25107780 | MS.gene45609:CDS |
| CAAAGAACCTCTCAATATAG+AGG | 0.481584 | 8.4:-25090212 | MS.gene45609:CDS |
| ATGAAATGGAAGCTCTTAGC+AGG | 0.491080 | 8.4:-25108172 | MS.gene45609:CDS |
| AATATGTTGCTCATTTAAGA+AGG | 0.492255 | 8.4:-25089310 | MS.gene45609:intron |
| GAGAGAAAATATGAAGAGAA+TGG | 0.493769 | 8.4:-25108474 | None:intergenic |
| CAAAGCAGAAAAGGAAGACA+AGG | 0.499730 | 8.4:-25090028 | MS.gene45609:intron |
| TTGTTGTCATATGCAGAAGA+AGG | 0.500286 | 8.4:+25088506 | None:intergenic |
| GAGTAACAATAGTTACTAAG+AGG | 0.502157 | 8.4:+25108272 | None:intergenic |
| TGATCATGTCCATGACTAGC+TGG | 0.509563 | 8.4:+25107720 | None:intergenic |
| GGACTTGAACATGAAAATGC+TGG | 0.514334 | 8.4:-25108245 | MS.gene45609:CDS |
| TAGCTTGCCATCTGCCATGT+TGG | 0.523190 | 8.4:+25089044 | None:intergenic |
| AATGAAGAATATGACAAGAC+AGG | 0.524291 | 8.4:-25089333 | MS.gene45609:CDS |
| TGGTAAAAGCTTGCTTGAAG+TGG | 0.527376 | 8.4:+25108302 | None:intergenic |
| CTTGCCATCTGCCATGTTGG+TGG | 0.528711 | 8.4:+25089047 | None:intergenic |
| GCAGAAGCAGAAGCAGAAGA+AGG | 0.529348 | 8.4:+25108338 | None:intergenic |
| ATTATGCCTCTCAAATCTGA+TGG | 0.532902 | 8.4:-25108203 | MS.gene45609:CDS |
| AAGCAAAGTCAAACTTCAAG+TGG | 0.535525 | 8.4:-25107816 | MS.gene45609:CDS |
| ACCCTTCTAACATCAACTCA+TGG | 0.539230 | 8.4:+25107841 | None:intergenic |
| ACCATGAGTTGATGTTAGAA+GGG | 0.549490 | 8.4:-25107842 | MS.gene45609:CDS |
| CACTACTACATGCATAATGA+GGG | 0.549671 | 8.4:+25107973 | None:intergenic |
| GCTATGGATACAAAGAAAAG+AGG | 0.553448 | 8.4:-25090293 | MS.gene45609:CDS |
| GATGATTGTTCCTGTTGTAG+AGG | 0.558499 | 8.4:-25107691 | MS.gene45609:CDS |
| GCACTACTACATGCATAATG+AGG | 0.560425 | 8.4:+25107972 | None:intergenic |
| ACTTAGTGGTTTAAAGAACT+GGG | 0.566240 | 8.4:-25107757 | MS.gene45609:CDS |
| GACAACAGTTGCAAGAAAGA+AGG | 0.566962 | 8.4:-25090052 | MS.gene45609:CDS |
| AAATTTCCATCAATCAAACA+TGG | 0.572921 | 8.4:-25107793 | MS.gene45609:CDS |
| GGGAAGTTTATGTGAGTGGA+TGG | 0.574919 | 8.4:+25089484 | None:intergenic |
| AACAGGGAAGTTTATGTGAG+TGG | 0.577161 | 8.4:+25089480 | None:intergenic |
| ACACAGCTAGACTGAGAGCT+AGG | 0.578119 | 8.4:+25090362 | None:intergenic |
| GAGGAAAATGAAGGTGAATG+TGG | 0.588553 | 8.4:-25107672 | MS.gene45609:CDS |
| AAAAGCAGTGGATTCTCAAG+AGG | 0.594604 | 8.4:-25089209 | MS.gene45609:CDS |
| AAAGCAGTGGATTCTCAAGA+GGG | 0.594710 | 8.4:-25089208 | MS.gene45609:CDS |
| GACACCACCAACATGGCAGA+TGG | 0.595541 | 8.4:-25089051 | MS.gene45609:CDS |
| TGTTACACCTCTATATTGAG+AGG | 0.601910 | 8.4:+25090205 | None:intergenic |
| CTCAATATAGAGGTGTAACA+AGG | 0.622456 | 8.4:-25090202 | MS.gene45609:intron |
| AACATGCTGTCTAAGCTCAA+AGG | 0.623476 | 8.4:+25107933 | None:intergenic |
| AAATTATCAAAATCAACTTG+AGG | 0.631469 | 8.4:-25089357 | MS.gene45609:CDS |
| CCATGTACAGAGGAGTAACA+AGG | 0.640756 | 8.4:-25089181 | MS.gene45609:intron |
| AATTTCCATCAATCAAACAT+GGG | 0.644018 | 8.4:-25107792 | MS.gene45609:CDS |
| ATTGCAGCTATAAAATTCAG+AGG | 0.646014 | 8.4:-25088674 | MS.gene45609:CDS |
| GGTAGCAGACACCACCAACA+TGG | 0.648189 | 8.4:-25089058 | MS.gene45609:intron |
| CCTGTTGTAGAGGAAAATGA+AGG | 0.654487 | 8.4:-25107681 | MS.gene45609:CDS |
| CAAGCAGCACTCAAGTATTG+GGG | 0.655625 | 8.4:-25089508 | MS.gene45609:CDS |
| AGTTACTAAGAGGAGTAGAG+TGG | 0.656974 | 8.4:+25108282 | None:intergenic |
| AGAGATCCATCAGATTTGAG+AGG | 0.660630 | 8.4:+25108197 | None:intergenic |
| CTTAGCAGGTCACAAACACA+AGG | 0.664909 | 8.4:-25108158 | MS.gene45609:intron |
| AGCTAGAAGGAACAAAGAGG+TGG | 0.670383 | 8.4:-25088567 | MS.gene45609:CDS |
| AAATTGTTGAACTTGTTGGG+AGG | 0.670469 | 8.4:+25088456 | None:intergenic |
| AAGCAGTGGATTCTCAAGAG+GGG | 0.699895 | 8.4:-25089207 | MS.gene45609:CDS |
| AGAGGGGCTTCCATGTACAG+AGG | 0.703240 | 8.4:-25089191 | MS.gene45609:CDS |
| AGCAGATGACATATTCTGTG+AGG | 0.705618 | 8.4:+25090334 | None:intergenic |
| ACAAGCTAGAAGGAACAAAG+AGG | 0.715606 | 8.4:-25088570 | MS.gene45609:CDS |
| ACTACTACATGCATAATGAG+GGG | 0.723804 | 8.4:+25107974 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.4 | gene | 25088433 | 25108486 | 25088433 | ID=MS.gene45609 |
| chr8.4 | mRNA | 25088433 | 25108486 | 25088433 | ID=MS.gene45609.t1;Parent=MS.gene45609 |
| chr8.4 | exon | 25108159 | 25108486 | 25108159 | ID=MS.gene45609.t1.exon1;Parent=MS.gene45609.t1 |
| chr8.4 | CDS | 25108159 | 25108486 | 25108159 | ID=cds.MS.gene45609.t1;Parent=MS.gene45609.t1 |
| chr8.4 | exon | 25107624 | 25108056 | 25107624 | ID=MS.gene45609.t1.exon2;Parent=MS.gene45609.t1 |
| chr8.4 | CDS | 25107624 | 25108056 | 25107624 | ID=cds.MS.gene45609.t1;Parent=MS.gene45609.t1 |
| chr8.4 | exon | 25090203 | 25090397 | 25090203 | ID=MS.gene45609.t1.exon3;Parent=MS.gene45609.t1 |
| chr8.4 | CDS | 25090203 | 25090397 | 25090203 | ID=cds.MS.gene45609.t1;Parent=MS.gene45609.t1 |
| chr8.4 | exon | 25090029 | 25090111 | 25090029 | ID=MS.gene45609.t1.exon4;Parent=MS.gene45609.t1 |
| chr8.4 | CDS | 25090029 | 25090111 | 25090029 | ID=cds.MS.gene45609.t1;Parent=MS.gene45609.t1 |
| chr8.4 | exon | 25089730 | 25089738 | 25089730 | ID=MS.gene45609.t1.exon5;Parent=MS.gene45609.t1 |
| chr8.4 | CDS | 25089730 | 25089738 | 25089730 | ID=cds.MS.gene45609.t1;Parent=MS.gene45609.t1 |
| chr8.4 | exon | 25089483 | 25089571 | 25089483 | ID=MS.gene45609.t1.exon6;Parent=MS.gene45609.t1 |
| chr8.4 | CDS | 25089483 | 25089571 | 25089483 | ID=cds.MS.gene45609.t1;Parent=MS.gene45609.t1 |
| chr8.4 | exon | 25089311 | 25089384 | 25089311 | ID=MS.gene45609.t1.exon7;Parent=MS.gene45609.t1 |
| chr8.4 | CDS | 25089311 | 25089384 | 25089311 | ID=cds.MS.gene45609.t1;Parent=MS.gene45609.t1 |
| chr8.4 | exon | 25089182 | 25089232 | 25089182 | ID=MS.gene45609.t1.exon8;Parent=MS.gene45609.t1 |
| chr8.4 | CDS | 25089182 | 25089232 | 25089182 | ID=cds.MS.gene45609.t1;Parent=MS.gene45609.t1 |
| chr8.4 | exon | 25088996 | 25089072 | 25088996 | ID=MS.gene45609.t1.exon9;Parent=MS.gene45609.t1 |
| chr8.4 | CDS | 25088996 | 25089072 | 25088996 | ID=cds.MS.gene45609.t1;Parent=MS.gene45609.t1 |
| chr8.4 | exon | 25088433 | 25088728 | 25088433 | ID=MS.gene45609.t1.exon10;Parent=MS.gene45609.t1 |
| chr8.4 | CDS | 25088433 | 25088728 | 25088433 | ID=cds.MS.gene45609.t1;Parent=MS.gene45609.t1 |
| Gene Sequence |
| Protein sequence |
