Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene060028.t1 | XP_013466931.1 | 78.3 | 382 | 83 | 0 | 1 | 382 | 1 | 382 | 8.50E-177 | 629.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene060028.t1 | Q8GT20 | 66.4 | 381 | 126 | 2 | 2 | 382 | 6 | 384 | 7.3e-153 | 541.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene060028.t1 | A0A072VG31 | 78.3 | 382 | 83 | 0 | 1 | 382 | 1 | 382 | 6.1e-177 | 629.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene060028 | MS.gene38699 | PPI |
| MS.gene038905 | MS.gene060028 | PPI |
| MS.gene060028 | MS.gene012959 | PPI |
| MS.gene95242 | MS.gene060028 | PPI |
| MS.gene32936 | MS.gene060028 | PPI |
| MS.gene069436 | MS.gene060028 | PPI |
| MS.gene32938 | MS.gene060028 | PPI |
| MS.gene38362 | MS.gene060028 | PPI |
| MS.gene060028 | MS.gene042317 | PPI |
| MS.gene060028 | MS.gene38702 | PPI |
| MS.gene38703 | MS.gene060028 | PPI |
| MS.gene38363 | MS.gene060028 | PPI |
| MS.gene38706 | MS.gene060028 | PPI |
| MS.gene039597 | MS.gene060028 | PPI |
| MS.gene32934 | MS.gene060028 | PPI |
| MS.gene060028 | MS.gene012961 | PPI |
| MS.gene38704 | MS.gene060028 | PPI |
| MS.gene060028 | MS.gene66891 | PPI |
| MS.gene069321 | MS.gene060028 | PPI |
| MS.gene060028 | MS.gene38359 | PPI |
| MS.gene38361 | MS.gene060028 | PPI |
| MS.gene38701 | MS.gene060028 | PPI |
| MS.gene060028 | MS.gene32933 | PPI |
| MS.gene046246 | MS.gene060028 | PPI |
| MS.gene38700 | MS.gene060028 | PPI |
| MS.gene012960 | MS.gene060028 | PPI |
| MS.gene38365 | MS.gene060028 | PPI |
| MS.gene012965 | MS.gene060028 | PPI |
| MS.gene012957 | MS.gene060028 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene060028.t1 | MTR_1g040175 | 78.272 | 382 | 83 | 0 | 1 | 382 | 1 | 382 | 0.0 | 638 |
| MS.gene060028.t1 | MTR_1g040215 | 76.440 | 382 | 90 | 0 | 1 | 382 | 1 | 382 | 0.0 | 613 |
| MS.gene060028.t1 | MTR_1g040195 | 72.775 | 382 | 79 | 3 | 1 | 382 | 1 | 357 | 0.0 | 563 |
| MS.gene060028.t1 | MTR_1g040320 | 70.157 | 382 | 78 | 1 | 1 | 382 | 1 | 346 | 0.0 | 549 |
| MS.gene060028.t1 | MTR_1g040315 | 64.660 | 382 | 96 | 3 | 1 | 382 | 1 | 343 | 6.38e-176 | 496 |
| MS.gene060028.t1 | MTR_7g114550 | 58.031 | 386 | 153 | 4 | 2 | 382 | 3 | 384 | 2.89e-161 | 461 |
| MS.gene060028.t1 | MTR_7g114520 | 56.589 | 387 | 153 | 5 | 5 | 382 | 7 | 387 | 1.73e-155 | 446 |
| MS.gene060028.t1 | MTR_7g114560 | 56.658 | 383 | 157 | 4 | 5 | 382 | 6 | 384 | 1.08e-154 | 444 |
| MS.gene060028.t1 | MTR_5g076700 | 56.168 | 381 | 163 | 3 | 5 | 382 | 6 | 385 | 5.13e-154 | 442 |
| MS.gene060028.t1 | MTR_7g114490 | 56.806 | 382 | 158 | 4 | 5 | 382 | 6 | 384 | 9.68e-154 | 443 |
| MS.gene060028.t1 | MTR_7g114470 | 56.021 | 382 | 163 | 3 | 5 | 382 | 7 | 387 | 2.24e-153 | 441 |
| MS.gene060028.t1 | MTR_1g081660 | 54.068 | 381 | 171 | 4 | 4 | 382 | 13 | 391 | 9.61e-143 | 414 |
| MS.gene060028.t1 | MTR_0042s0190 | 72.936 | 218 | 59 | 0 | 165 | 382 | 1 | 218 | 7.27e-119 | 347 |
| MS.gene060028.t1 | MTR_0502s0010 | 58.025 | 243 | 94 | 4 | 100 | 338 | 1 | 239 | 6.37e-97 | 289 |
| MS.gene060028.t1 | MTR_0042s0230 | 82.993 | 147 | 25 | 0 | 1 | 147 | 1 | 147 | 9.63e-88 | 262 |
| MS.gene060028.t1 | MTR_7g114510 | 53.061 | 245 | 99 | 4 | 147 | 382 | 8 | 245 | 1.97e-81 | 252 |
| MS.gene060028.t1 | MTR_3g035000 | 70.270 | 185 | 28 | 3 | 199 | 382 | 43 | 201 | 1.48e-80 | 249 |
| MS.gene060028.t1 | MTR_0042s0190 | 70.588 | 153 | 45 | 0 | 230 | 382 | 1 | 153 | 2.44e-75 | 233 |
| MS.gene060028.t1 | MTR_8g039950 | 82.812 | 128 | 22 | 0 | 1 | 128 | 1 | 128 | 3.85e-72 | 221 |
| MS.gene060028.t1 | MTR_8g096530 | 34.167 | 360 | 224 | 8 | 1 | 355 | 1 | 352 | 1.05e-70 | 229 |
| MS.gene060028.t1 | MTR_7g027175 | 34.759 | 374 | 232 | 8 | 14 | 382 | 21 | 387 | 7.93e-69 | 223 |
| MS.gene060028.t1 | MTR_3g098980 | 32.454 | 379 | 243 | 8 | 9 | 382 | 14 | 384 | 3.14e-67 | 219 |
| MS.gene060028.t1 | MTR_7g114500 | 62.000 | 150 | 57 | 0 | 2 | 151 | 3 | 152 | 7.23e-66 | 206 |
| MS.gene060028.t1 | MTR_3g051790 | 60.274 | 146 | 58 | 0 | 2 | 147 | 6 | 151 | 6.50e-59 | 189 |
| MS.gene060028.t1 | MTR_7g114420 | 41.629 | 221 | 98 | 3 | 165 | 382 | 1 | 193 | 2.66e-49 | 167 |
| MS.gene060028.t1 | MTR_1g053315 | 32.976 | 373 | 231 | 10 | 17 | 373 | 26 | 395 | 6.82e-49 | 172 |
| MS.gene060028.t1 | MTR_3g112180 | 32.283 | 381 | 230 | 12 | 17 | 383 | 20 | 386 | 8.82e-49 | 171 |
| MS.gene060028.t1 | MTR_4g055170 | 31.445 | 353 | 229 | 7 | 16 | 357 | 19 | 369 | 1.52e-48 | 171 |
| MS.gene060028.t1 | MTR_2g105330 | 29.651 | 344 | 232 | 6 | 16 | 355 | 10 | 347 | 1.61e-45 | 162 |
| MS.gene060028.t1 | MTR_4g007540 | 30.398 | 352 | 234 | 7 | 9 | 355 | 3 | 348 | 1.01e-44 | 160 |
| MS.gene060028.t1 | MTR_2g064495 | 29.577 | 355 | 238 | 7 | 5 | 355 | 1 | 347 | 1.11e-44 | 160 |
| MS.gene060028.t1 | MTR_3g071320 | 30.256 | 390 | 250 | 12 | 8 | 382 | 4 | 386 | 4.22e-43 | 155 |
| MS.gene060028.t1 | MTR_8g075610 | 29.971 | 347 | 226 | 8 | 16 | 355 | 1 | 337 | 6.60e-42 | 152 |
| MS.gene060028.t1 | MTR_3g465930 | 30.084 | 359 | 228 | 11 | 9 | 350 | 10 | 362 | 6.33e-38 | 142 |
| MS.gene060028.t1 | MTR_6g053810 | 30.421 | 309 | 186 | 10 | 57 | 347 | 64 | 361 | 1.72e-36 | 138 |
| MS.gene060028.t1 | MTR_3g465910 | 29.363 | 361 | 229 | 11 | 7 | 350 | 8 | 359 | 2.42e-35 | 136 |
| MS.gene060028.t1 | MTR_7g056087 | 29.521 | 376 | 233 | 12 | 16 | 369 | 11 | 376 | 3.21e-35 | 134 |
| MS.gene060028.t1 | MTR_7g086000 | 29.745 | 353 | 222 | 13 | 17 | 350 | 12 | 357 | 9.73e-35 | 134 |
| MS.gene060028.t1 | MTR_7g084940 | 27.273 | 374 | 253 | 10 | 16 | 380 | 23 | 386 | 1.55e-34 | 132 |
| MS.gene060028.t1 | MTR_3g465990 | 28.814 | 354 | 221 | 11 | 3 | 337 | 4 | 345 | 1.24e-33 | 130 |
| MS.gene060028.t1 | MTR_7g110610 | 26.934 | 349 | 199 | 9 | 5 | 346 | 1 | 300 | 1.25e-33 | 129 |
| MS.gene060028.t1 | MTR_3g026950 | 25.926 | 351 | 239 | 8 | 17 | 352 | 10 | 354 | 1.58e-33 | 130 |
| MS.gene060028.t1 | MTR_7g085990 | 28.184 | 369 | 226 | 11 | 9 | 350 | 2 | 358 | 2.02e-33 | 130 |
| MS.gene060028.t1 | MTR_3g465980 | 29.462 | 353 | 220 | 11 | 3 | 337 | 4 | 345 | 1.92e-32 | 127 |
| MS.gene060028.t1 | MTR_4g088765 | 69.620 | 79 | 24 | 0 | 1 | 79 | 1 | 79 | 2.14e-32 | 118 |
| MS.gene060028.t1 | MTR_4g127650 | 28.986 | 345 | 220 | 10 | 17 | 346 | 18 | 352 | 2.75e-32 | 127 |
| MS.gene060028.t1 | MTR_7g085930 | 27.473 | 364 | 239 | 11 | 9 | 352 | 6 | 364 | 3.00e-32 | 127 |
| MS.gene060028.t1 | MTR_3g465950 | 29.882 | 338 | 215 | 10 | 16 | 337 | 17 | 348 | 1.67e-31 | 124 |
| MS.gene060028.t1 | MTR_3g465880 | 30.618 | 356 | 218 | 11 | 16 | 350 | 17 | 364 | 2.26e-31 | 124 |
| MS.gene060028.t1 | MTR_7g084910 | 26.923 | 390 | 248 | 13 | 1 | 380 | 11 | 373 | 6.91e-31 | 122 |
| MS.gene060028.t1 | MTR_2g015430 | 30.068 | 296 | 201 | 5 | 59 | 350 | 53 | 346 | 7.52e-31 | 122 |
| MS.gene060028.t1 | MTR_3g049150 | 27.324 | 355 | 225 | 11 | 17 | 352 | 10 | 350 | 1.42e-30 | 122 |
| MS.gene060028.t1 | MTR_4g097090 | 27.735 | 393 | 253 | 12 | 1 | 378 | 1 | 377 | 1.10e-27 | 114 |
| MS.gene060028.t1 | MTR_3g465870 | 29.492 | 295 | 187 | 9 | 16 | 295 | 19 | 307 | 9.67e-25 | 105 |
| MS.gene060028.t1 | MTR_5g090830 | 25.954 | 393 | 255 | 13 | 7 | 375 | 8 | 388 | 2.40e-23 | 101 |
| MS.gene060028.t1 | MTR_4g013050 | 25.000 | 340 | 212 | 10 | 17 | 352 | 12 | 312 | 3.38e-23 | 100 |
| MS.gene060028.t1 | MTR_5g090810 | 26.064 | 376 | 242 | 13 | 7 | 358 | 8 | 371 | 2.53e-22 | 98.6 |
| MS.gene060028.t1 | MTR_3g070170 | 26.769 | 325 | 188 | 11 | 52 | 337 | 54 | 367 | 8.23e-20 | 91.3 |
| MS.gene060028.t1 | MTR_5g084870 | 25.078 | 319 | 205 | 11 | 15 | 321 | 9 | 305 | 1.24e-19 | 90.5 |
| MS.gene060028.t1 | MTR_3g101930 | 29.474 | 285 | 171 | 12 | 64 | 329 | 70 | 343 | 5.19e-19 | 89.0 |
| MS.gene060028.t1 | MTR_4g022800 | 25.552 | 317 | 203 | 12 | 23 | 323 | 25 | 324 | 1.59e-18 | 87.4 |
| MS.gene060028.t1 | MTR_3g101900 | 25.287 | 348 | 216 | 13 | 61 | 382 | 63 | 392 | 8.64e-18 | 85.1 |
| MS.gene060028.t1 | MTR_8g079950 | 32.222 | 180 | 104 | 6 | 15 | 187 | 9 | 177 | 1.57e-17 | 84.3 |
| MS.gene060028.t1 | MTR_5g090880 | 23.824 | 340 | 222 | 13 | 41 | 358 | 49 | 373 | 2.44e-17 | 84.0 |
| MS.gene060028.t1 | MTR_3g086020 | 23.599 | 339 | 228 | 13 | 15 | 350 | 11 | 321 | 3.45e-17 | 83.2 |
| MS.gene060028.t1 | MTR_8g041770 | 24.632 | 272 | 193 | 6 | 59 | 324 | 59 | 324 | 7.57e-17 | 82.0 |
| MS.gene060028.t1 | MTR_3g102020 | 26.361 | 349 | 215 | 14 | 24 | 350 | 31 | 359 | 8.40e-17 | 82.0 |
| MS.gene060028.t1 | MTR_4g022670 | 24.528 | 318 | 205 | 12 | 23 | 323 | 25 | 324 | 1.07e-16 | 81.6 |
| MS.gene060028.t1 | MTR_7g114417 | 66.667 | 51 | 16 | 1 | 89 | 138 | 29 | 79 | 1.96e-16 | 74.3 |
| MS.gene060028.t1 | MTR_4g022720 | 23.885 | 314 | 206 | 11 | 23 | 323 | 25 | 318 | 2.72e-16 | 80.5 |
| MS.gene060028.t1 | MTR_7g026860 | 26.250 | 320 | 197 | 14 | 23 | 323 | 25 | 324 | 2.91e-16 | 80.5 |
| MS.gene060028.t1 | MTR_4g094828 | 22.546 | 377 | 241 | 12 | 23 | 364 | 30 | 390 | 4.04e-16 | 80.1 |
| MS.gene060028.t1 | MTR_3g450710 | 25.220 | 341 | 199 | 14 | 48 | 352 | 47 | 367 | 6.97e-16 | 79.3 |
| MS.gene060028.t1 | MTR_0190s0020 | 24.848 | 330 | 210 | 13 | 64 | 364 | 63 | 383 | 8.61e-16 | 79.0 |
| MS.gene060028.t1 | MTR_8g079980 | 25.632 | 277 | 176 | 10 | 15 | 278 | 9 | 268 | 1.37e-15 | 78.2 |
| MS.gene060028.t1 | MTR_2g007880 | 25.373 | 268 | 167 | 10 | 13 | 270 | 21 | 265 | 3.01e-15 | 77.4 |
| MS.gene060028.t1 | MTR_3g102010 | 26.364 | 330 | 198 | 14 | 23 | 329 | 31 | 338 | 3.54e-15 | 77.0 |
| MS.gene060028.t1 | MTR_4g094835 | 23.693 | 287 | 184 | 9 | 57 | 323 | 57 | 328 | 4.98e-15 | 76.6 |
| MS.gene060028.t1 | MTR_8g467590 | 25.424 | 295 | 192 | 12 | 15 | 302 | 9 | 282 | 1.54e-14 | 75.1 |
| MS.gene060028.t1 | MTR_3g026310 | 26.690 | 281 | 179 | 10 | 64 | 323 | 55 | 329 | 8.63e-14 | 72.8 |
| MS.gene060028.t1 | MTR_3g450690 | 24.921 | 317 | 193 | 12 | 64 | 352 | 72 | 371 | 8.65e-14 | 73.2 |
| MS.gene060028.t1 | MTR_4g022760 | 25.000 | 316 | 206 | 11 | 23 | 323 | 25 | 324 | 1.04e-13 | 72.4 |
| MS.gene060028.t1 | MTR_4g022290 | 20.937 | 363 | 231 | 13 | 46 | 364 | 35 | 385 | 1.76e-13 | 72.0 |
| MS.gene060028.t1 | MTR_6g016815 | 28.723 | 188 | 114 | 8 | 43 | 216 | 51 | 232 | 1.32e-12 | 68.9 |
| MS.gene060028.t1 | MTR_4g022825 | 25.175 | 286 | 187 | 12 | 56 | 323 | 47 | 323 | 1.59e-12 | 68.9 |
| MS.gene060028.t1 | MTR_5g026320 | 25.595 | 336 | 215 | 13 | 22 | 343 | 33 | 347 | 2.39e-12 | 68.6 |
| MS.gene060028.t1 | MTR_8g079710 | 23.117 | 385 | 246 | 15 | 23 | 382 | 30 | 389 | 7.21e-12 | 67.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene060028.t1 | AT5G17540 | 56.266 | 391 | 160 | 6 | 1 | 387 | 1 | 384 | 7.84e-152 | 437 |
| MS.gene060028.t1 | AT3G03480 | 51.697 | 383 | 174 | 6 | 5 | 382 | 15 | 391 | 2.45e-130 | 382 |
| MS.gene060028.t1 | AT5G63560 | 33.419 | 389 | 239 | 9 | 1 | 382 | 1 | 376 | 3.48e-71 | 229 |
| MS.gene060028.t1 | AT5G41040 | 34.726 | 383 | 232 | 10 | 9 | 382 | 17 | 390 | 4.44e-71 | 229 |
| MS.gene060028.t1 | AT5G41040 | 34.726 | 383 | 232 | 10 | 9 | 382 | 33 | 406 | 5.24e-71 | 230 |
| MS.gene060028.t1 | AT3G48720 | 32.432 | 370 | 240 | 7 | 1 | 365 | 1 | 365 | 3.80e-70 | 227 |
| MS.gene060028.t1 | AT1G27620 | 30.208 | 384 | 243 | 10 | 10 | 382 | 10 | 379 | 1.83e-50 | 176 |
| MS.gene060028.t1 | AT1G03390 | 32.086 | 374 | 234 | 10 | 13 | 373 | 26 | 392 | 9.35e-48 | 169 |
| MS.gene060028.t1 | AT2G40230 | 31.795 | 390 | 238 | 13 | 9 | 382 | 5 | 382 | 5.86e-45 | 160 |
| MS.gene060028.t1 | AT3G62160 | 31.186 | 388 | 237 | 11 | 5 | 382 | 1 | 368 | 1.03e-44 | 160 |
| MS.gene060028.t1 | AT2G19070 | 31.034 | 348 | 220 | 9 | 12 | 345 | 7 | 348 | 3.72e-42 | 154 |
| MS.gene060028.t1 | AT5G48930 | 29.859 | 355 | 226 | 7 | 12 | 355 | 6 | 348 | 4.37e-42 | 153 |
| MS.gene060028.t1 | AT3G47170 | 28.532 | 361 | 218 | 10 | 7 | 337 | 10 | 360 | 7.42e-42 | 153 |
| MS.gene060028.t1 | AT1G28680 | 29.178 | 377 | 252 | 11 | 16 | 382 | 11 | 382 | 1.46e-41 | 152 |
| MS.gene060028.t1 | AT1G28680 | 29.859 | 355 | 235 | 10 | 16 | 361 | 11 | 360 | 1.99e-41 | 150 |
| MS.gene060028.t1 | AT1G65450 | 30.500 | 400 | 241 | 14 | 1 | 380 | 12 | 394 | 1.04e-38 | 144 |
| MS.gene060028.t1 | AT5G07080 | 29.032 | 403 | 234 | 14 | 7 | 378 | 12 | 393 | 1.69e-37 | 141 |
| MS.gene060028.t1 | AT2G23510 | 30.123 | 405 | 244 | 16 | 1 | 382 | 5 | 393 | 1.51e-36 | 138 |
| MS.gene060028.t1 | AT5G57840 | 29.248 | 359 | 225 | 10 | 9 | 352 | 3 | 347 | 2.17e-35 | 135 |
| MS.gene060028.t1 | AT2G25150 | 29.073 | 399 | 242 | 14 | 9 | 382 | 13 | 395 | 2.31e-32 | 127 |
| MS.gene060028.t1 | AT1G78990 | 27.848 | 316 | 206 | 9 | 62 | 368 | 65 | 367 | 6.59e-24 | 103 |
| MS.gene060028.t1 | AT4G15390 | 26.398 | 322 | 211 | 11 | 3 | 316 | 2 | 305 | 6.38e-23 | 100 |
| MS.gene060028.t1 | AT4G15390 | 26.398 | 322 | 211 | 11 | 3 | 316 | 2 | 305 | 6.38e-23 | 100 |
| MS.gene060028.t1 | AT1G32910 | 26.403 | 303 | 201 | 10 | 62 | 352 | 63 | 355 | 6.35e-21 | 94.7 |
| MS.gene060028.t1 | AT5G42830 | 27.692 | 390 | 219 | 15 | 15 | 364 | 23 | 389 | 3.00e-20 | 92.4 |
| MS.gene060028.t1 | AT1G31490 | 24.786 | 351 | 230 | 11 | 6 | 343 | 3 | 332 | 1.64e-19 | 90.1 |
| MS.gene060028.t1 | AT1G24420 | 29.044 | 272 | 155 | 9 | 15 | 272 | 11 | 258 | 4.02e-19 | 89.0 |
| MS.gene060028.t1 | AT1G24420 | 29.044 | 272 | 155 | 9 | 15 | 272 | 11 | 258 | 4.02e-19 | 89.0 |
| MS.gene060028.t1 | AT5G07860 | 25.656 | 343 | 217 | 9 | 64 | 377 | 72 | 405 | 6.33e-19 | 88.6 |
| MS.gene060028.t1 | AT4G31910 | 28.653 | 349 | 214 | 12 | 64 | 383 | 64 | 406 | 1.38e-18 | 87.4 |
| MS.gene060028.t1 | AT5G07850 | 28.328 | 293 | 188 | 11 | 64 | 342 | 70 | 354 | 3.78e-18 | 86.3 |
| MS.gene060028.t1 | AT3G26040 | 25.000 | 260 | 175 | 8 | 15 | 270 | 9 | 252 | 2.51e-17 | 83.6 |
| MS.gene060028.t1 | AT3G30280 | 27.244 | 312 | 196 | 13 | 15 | 315 | 12 | 303 | 7.47e-17 | 82.4 |
| MS.gene060028.t1 | AT1G24430 | 26.129 | 310 | 195 | 12 | 15 | 315 | 11 | 295 | 7.63e-17 | 82.0 |
| MS.gene060028.t1 | AT5G16410 | 26.367 | 311 | 196 | 13 | 62 | 358 | 89 | 380 | 9.03e-16 | 79.3 |
| MS.gene060028.t1 | AT1G65450 | 28.692 | 237 | 147 | 7 | 158 | 380 | 2 | 230 | 9.82e-16 | 77.4 |
| MS.gene060028.t1 | AT3G50270 | 25.501 | 349 | 217 | 15 | 23 | 350 | 30 | 356 | 4.94e-15 | 76.6 |
| MS.gene060028.t1 | AT5G38130 | 25.000 | 340 | 213 | 14 | 23 | 344 | 48 | 363 | 1.44e-14 | 75.5 |
| MS.gene060028.t1 | AT5G47950 | 25.301 | 332 | 200 | 14 | 15 | 337 | 12 | 304 | 1.44e-14 | 75.1 |
| MS.gene060028.t1 | AT5G23940 | 25.168 | 298 | 193 | 9 | 61 | 338 | 62 | 349 | 2.59e-13 | 71.6 |
| MS.gene060028.t1 | AT5G47980 | 26.437 | 261 | 170 | 11 | 15 | 270 | 11 | 254 | 4.20e-13 | 70.9 |
| MS.gene060028.t1 | AT5G67160 | 25.237 | 317 | 206 | 9 | 54 | 353 | 46 | 348 | 4.28e-13 | 70.9 |
| MS.gene060028.t1 | AT5G23970 | 25.329 | 304 | 190 | 11 | 15 | 309 | 9 | 284 | 4.40e-13 | 70.9 |
| MS.gene060028.t1 | AT3G50300 | 24.038 | 312 | 206 | 14 | 64 | 357 | 59 | 357 | 3.76e-12 | 67.8 |
Find 87 sgRNAs with CRISPR-Local
Find 127 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTTGATGGAGTCACCATTTC+TGG | 0.047035 | 6.3:-39829864 | None:intergenic |
| GTTCCTTTGTTGTCTGGTTC+TGG | 0.137058 | 6.3:-39831136 | None:intergenic |
| GTCCACCACACTTTCTTCTT+TGG | 0.194806 | 6.3:+39831181 | MS.gene060028:CDS |
| CACTCCATTGGTCCTTATTC+AGG | 0.214817 | 6.3:+39830241 | MS.gene060028:CDS |
| GCAATCAACCGCAGATTTAA+TGG | 0.216227 | 6.3:+39831525 | MS.gene060028:CDS |
| GGGTCTTTCCCTACCATAAT+TGG | 0.216910 | 6.3:-39829981 | None:intergenic |
| TTACAACTATAATCCAATTA+TGG | 0.303124 | 6.3:+39829968 | MS.gene060028:CDS |
| GGATTTGGAGATGTTGAGTT+GGG | 0.310910 | 6.3:+39831613 | MS.gene060028:CDS |
| AGTAACCATCTGGTAGAAAT+AGG | 0.335725 | 6.3:-39831381 | None:intergenic |
| GATGTTACACGTGCTGGATT+TGG | 0.343125 | 6.3:+39831598 | MS.gene060028:CDS |
| TTCCTTTGTTGTCTGGTTCT+GGG | 0.348645 | 6.3:-39831135 | None:intergenic |
| AGCACATATATACCTGAATA+AGG | 0.367780 | 6.3:-39830253 | None:intergenic |
| GAGCTTCTTTATGATGTTCC+CGG | 0.380046 | 6.3:+39830200 | MS.gene060028:CDS |
| TAACTGTGAATAACAGAGAT+TGG | 0.380371 | 6.3:-39829830 | None:intergenic |
| AAAGTGGTTCCTTTGTTGTC+TGG | 0.383147 | 6.3:-39831142 | None:intergenic |
| CGCAGATTTAATGGTTATGA+AGG | 0.388461 | 6.3:+39831534 | MS.gene060028:CDS |
| GATGTTAGTCTGAAAGAATT+TGG | 0.397462 | 6.3:+39830143 | MS.gene060028:CDS |
| AGCTCTTGCAAGCAAGGAAA+TGG | 0.404674 | 6.3:-39830182 | None:intergenic |
| GTGAAGCACATCTGTAGAAC+CGG | 0.406200 | 6.3:-39830219 | None:intergenic |
| CTCTGTTATTCACAGTTAAG+AGG | 0.410205 | 6.3:+39829835 | MS.gene060028:CDS |
| GCACCATCTCCTTCTTTAGC+TGG | 0.412609 | 6.3:-39831656 | None:intergenic |
| GTTCAGTTCATGAGTGCCTT+AGG | 0.419735 | 6.3:+39831004 | MS.gene060028:CDS |
| CGAATTTCCGCCACCTCGGT+GGG | 0.435593 | 6.3:-39831205 | None:intergenic |
| AGGTCCTGGTAGGAAACTTA+TGG | 0.438196 | 6.3:+39830076 | MS.gene060028:CDS |
| GCATTTCTAAGAATGTCAAC+AGG | 0.440469 | 6.3:-39830002 | None:intergenic |
| AATAAACAAAACACCTTCTC+CGG | 0.448986 | 6.3:-39830108 | None:intergenic |
| TGGATTTGGAGATGTTGAGT+TGG | 0.458569 | 6.3:+39831612 | MS.gene060028:CDS |
| CTTTGGCCCCACCGAGGTGG+CGG | 0.469425 | 6.3:+39831198 | MS.gene060028:CDS |
| TCCACTTGCTGGTAGATTGA+GGG | 0.472300 | 6.3:+39830052 | MS.gene060028:CDS |
| TTGATGGAGTCACCATTTCT+GGG | 0.474728 | 6.3:-39829863 | None:intergenic |
| ATCCACTTGCTGGTAGATTG+AGG | 0.475347 | 6.3:+39830051 | MS.gene060028:CDS |
| GCGAATTTCCGCCACCTCGG+TGG | 0.476649 | 6.3:-39831206 | None:intergenic |
| ACATAGAGTGTTGTTGTAGT+TGG | 0.478934 | 6.3:-39831246 | None:intergenic |
| GTGGTGGACCATGTCGTCTA+AGG | 0.486220 | 6.3:-39831167 | None:intergenic |
| AACTGTGAATAACAGAGATT+GGG | 0.490806 | 6.3:-39829829 | None:intergenic |
| TTTGAAAACGTATCGACTCT+TGG | 0.492698 | 6.3:-39829929 | None:intergenic |
| GTGTCTGATGTTACACGTGC+TGG | 0.496612 | 6.3:+39831592 | MS.gene060028:CDS |
| CCCTCGAGATATTTCTCCTA+AGG | 0.500192 | 6.3:-39831020 | None:intergenic |
| GCATTACCGTAGTAACCATC+TGG | 0.502489 | 6.3:-39831391 | None:intergenic |
| TAAAGAAGCTCTTGCAAGCA+AGG | 0.503205 | 6.3:-39830188 | None:intergenic |
| TAAGAGGCGTAACCCAGAAA+TGG | 0.504500 | 6.3:+39829851 | MS.gene060028:CDS |
| TGATGAGTGCACGTCACTCT+TGG | 0.506820 | 6.3:-39831103 | None:intergenic |
| CATACAATCAGCGATGGATC+AGG | 0.512892 | 6.3:+39830977 | MS.gene060028:CDS |
| TAGTTGTAAAATTGTATCAC+AGG | 0.515339 | 6.3:-39829954 | None:intergenic |
| AAACTTATGGTCGATTGTAC+CGG | 0.516847 | 6.3:+39830089 | MS.gene060028:CDS |
| CACCACACAGGTAAGATTGA+CGG | 0.535920 | 6.3:-39831052 | None:intergenic |
| TCTGTCGCCGTCACAACTGC+AGG | 0.536977 | 6.3:+39831424 | MS.gene060028:CDS |
| ACTATAATCCAATTATGGTA+GGG | 0.538005 | 6.3:+39829973 | MS.gene060028:CDS |
| GTTAACCTATTTCTACCAGA+TGG | 0.541287 | 6.3:+39831376 | MS.gene060028:CDS |
| AACTATAATCCAATTATGGT+AGG | 0.543908 | 6.3:+39829972 | MS.gene060028:CDS |
| TGTTGTTGTAGTTGGTGAGA+TGG | 0.552335 | 6.3:-39831238 | None:intergenic |
| AATCCCGACTTATTAAAATA+CGG | 0.553242 | 6.3:-39831562 | None:intergenic |
| TGAGTGCACGTCACTCTTGG+TGG | 0.559530 | 6.3:-39831100 | None:intergenic |
| CTTCTTTGGCCCCACCGAGG+TGG | 0.564502 | 6.3:+39831195 | MS.gene060028:CDS |
| GATTTGGAGATGTTGAGTTG+GGG | 0.565169 | 6.3:+39831614 | MS.gene060028:CDS |
| GGTAGATTGAGGGAAGGTCC+TGG | 0.566682 | 6.3:+39830062 | MS.gene060028:CDS |
| TCCCTCAATCTACCAGCAAG+TGG | 0.571263 | 6.3:-39830053 | None:intergenic |
| AGATGTGCTTCACACTCCAT+TGG | 0.577754 | 6.3:+39830229 | MS.gene060028:CDS |
| TTTCTACCAGATGGTTACTA+CGG | 0.585833 | 6.3:+39831385 | MS.gene060028:CDS |
| AAAACTAATTGAAAATCCGT+TGG | 0.586156 | 6.3:+39831447 | MS.gene060028:CDS |
| TATACCTGAATAAGGACCAA+TGG | 0.592785 | 6.3:-39830245 | None:intergenic |
| ATGAATCATACAATCAGCGA+TGG | 0.600874 | 6.3:+39830971 | MS.gene060028:CDS |
| AAATCTAATGCATATGCCAA+CGG | 0.602234 | 6.3:-39831463 | None:intergenic |
| ATGGTCGATTGTACCGGAGA+AGG | 0.604107 | 6.3:+39830095 | MS.gene060028:CDS |
| ATTTGGAGATGTTGAGTTGG+GGG | 0.607562 | 6.3:+39831615 | MS.gene060028:CDS |
| CTTCATAACCATTAAATCTG+CGG | 0.607818 | 6.3:-39831533 | None:intergenic |
| GCAGATTTAATGGTTATGAA+GGG | 0.608722 | 6.3:+39831535 | MS.gene060028:CDS |
| AGTGCGAATTTCCGCCACCT+CGG | 0.610057 | 6.3:-39831209 | None:intergenic |
| TCTTGCAAGCAAGGAAATGG+AGG | 0.610093 | 6.3:-39830179 | None:intergenic |
| GTTGTAGTTGGTGAGATGGA+AGG | 0.618120 | 6.3:-39831234 | None:intergenic |
| GCCTTAGGAGAAATATCTCG+AGG | 0.629011 | 6.3:+39831019 | MS.gene060028:CDS |
| GAATTTCCGCCACCTCGGTG+GGG | 0.636804 | 6.3:-39831204 | None:intergenic |
| GAGTGCACGTCACTCTTGGT+GGG | 0.638994 | 6.3:-39831099 | None:intergenic |
| GATTGAGGGAAGGTCCTGGT+AGG | 0.644152 | 6.3:+39830066 | MS.gene060028:CDS |
| TGAAGCACATCTGTAGAACC+GGG | 0.644835 | 6.3:-39830218 | None:intergenic |
| TCGACCATAAGTTTCCTACC+AGG | 0.661707 | 6.3:-39830080 | None:intergenic |
| GACCCAGAACCAGACAACAA+AGG | 0.662502 | 6.3:+39831133 | MS.gene060028:CDS |
| CATTTCTAAGAATGTCAACA+GGG | 0.667645 | 6.3:-39830001 | None:intergenic |
| CCTTAGGAGAAATATCTCGA+GGG | 0.670031 | 6.3:+39831020 | MS.gene060028:CDS |
| CTTGCTGGTAGATTGAGGGA+AGG | 0.675398 | 6.3:+39830056 | MS.gene060028:CDS |
| GGCCAAAGAAGAAAGTGTGG+TGG | 0.676799 | 6.3:-39831183 | None:intergenic |
| CAGGTAACACGACTCAAGTG+TGG | 0.681633 | 6.3:+39830926 | MS.gene060028:intron |
| AAAAGCTCTCTACACCACAC+AGG | 0.690933 | 6.3:-39831064 | None:intergenic |
| TGGGGCCAAAGAAGAAAGTG+TGG | 0.691932 | 6.3:-39831186 | None:intergenic |
| GTAACACGACTCAAGTGTGG+TGG | 0.709250 | 6.3:+39830929 | MS.gene060028:CDS |
| TTTCTTCTTTGGCCCCACCG+AGG | 0.710876 | 6.3:+39831192 | MS.gene060028:CDS |
| AACCGTCAATCTTACCTGTG+TGG | 0.723056 | 6.3:+39831050 | MS.gene060028:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATATAAATAGAAAAATGTT+TGG | + | chr6.3:39830303-39830322 | MS.gene060028:intron | 10.0% |
| !! | ACTATTGTAAAAATAAATTA+TGG | + | chr6.3:39830474-39830493 | MS.gene060028:intron | 10.0% |
| !! | TATATTTATTATTTAGTGTT+TGG | + | chr6.3:39830766-39830785 | MS.gene060028:intron | 10.0% |
| !! | AAATTTATACACAACAGTAA+AGG | + | chr6.3:39830885-39830904 | MS.gene060028:intron | 20.0% |
| !! | ACATGATGAACTAAATAAAT+TGG | - | chr6.3:39830663-39830682 | None:intergenic | 20.0% |
| !! | ATATTATGAGAAATGCTATT+TGG | - | chr6.3:39830288-39830307 | None:intergenic | 20.0% |
| !! | CATGATGAACTAAATAAATT+GGG | - | chr6.3:39830662-39830681 | None:intergenic | 20.0% |
| !! | TTACAACTATAATCCAATTA+TGG | + | chr6.3:39829968-39829987 | MS.gene060028:CDS | 20.0% |
| !!! | ATAAATATTTTCGTAAGAGA+TGG | - | chr6.3:39830861-39830880 | None:intergenic | 20.0% |
| !!! | ATTTGAAACTGTATATTTTC+CGG | - | chr6.3:39830535-39830554 | None:intergenic | 20.0% |
| ! | AAAACTAATTGAAAATCCGT+TGG | + | chr6.3:39831447-39831466 | MS.gene060028:CDS | 25.0% |
| ! | AACTATAATCCAATTATGGT+AGG | + | chr6.3:39829972-39829991 | MS.gene060028:CDS | 25.0% |
| ! | AATCCCGACTTATTAAAATA+CGG | - | chr6.3:39831565-39831584 | None:intergenic | 25.0% |
| ! | ACTATAATCCAATTATGGTA+GGG | + | chr6.3:39829973-39829992 | MS.gene060028:CDS | 25.0% |
| ! | TAACGTAACTATATTCAAGA+GGG | + | chr6.3:39830734-39830753 | MS.gene060028:intron | 25.0% |
| ! | TAGTTGTAAAATTGTATCAC+AGG | - | chr6.3:39829957-39829976 | None:intergenic | 25.0% |
| !! | AAATCATCACTGCATATTTT+TGG | + | chr6.3:39831272-39831291 | MS.gene060028:CDS | 25.0% |
| !!! | AATATGATTGTCTTGTTTAG+AGG | + | chr6.3:39830798-39830817 | MS.gene060028:intron | 25.0% |
| !!! | AATTTTATTTCATGAGGTGT+GGG | - | chr6.3:39829891-39829910 | None:intergenic | 25.0% |
| !!! | GAGAGTAATTTTATTTCATG+AGG | - | chr6.3:39829897-39829916 | None:intergenic | 25.0% |
| !!! | TAATTTTATTTCATGAGGTG+TGG | - | chr6.3:39829892-39829911 | None:intergenic | 25.0% |
| !!! | TTTGAAACTGTATATTTTCC+GGG | - | chr6.3:39830534-39830553 | None:intergenic | 25.0% |
| AAACAAGACAATCATATTCG+AGG | - | chr6.3:39830796-39830815 | None:intergenic | 30.0% | |
| AAATCTAATGCATATGCCAA+CGG | - | chr6.3:39831466-39831485 | None:intergenic | 30.0% | |
| AACTGTGAATAACAGAGATT+GGG | - | chr6.3:39829832-39829851 | None:intergenic | 30.0% | |
| AATAAACAAAACACCTTCTC+CGG | - | chr6.3:39830111-39830130 | None:intergenic | 30.0% | |
| AGCACATATATACCTGAATA+AGG | - | chr6.3:39830256-39830275 | None:intergenic | 30.0% | |
| ATGATGTGTTGAATGAATGT+TGG | + | chr6.3:39830431-39830450 | MS.gene060028:intron | 30.0% | |
| CTAACGTAACTATATTCAAG+AGG | + | chr6.3:39830733-39830752 | MS.gene060028:intron | 30.0% | |
| CTTCATAACCATTAAATCTG+CGG | - | chr6.3:39831536-39831555 | None:intergenic | 30.0% | |
| GCAGATTTAATGGTTATGAA+GGG | + | chr6.3:39831535-39831554 | MS.gene060028:CDS | 30.0% | |
| TAACTGTGAATAACAGAGAT+TGG | - | chr6.3:39829833-39829852 | None:intergenic | 30.0% | |
| TGGAATGTGATGAATATGAA+AGG | + | chr6.3:39830375-39830394 | MS.gene060028:intron | 30.0% | |
| ! | CATTTCTAAGAATGTCAACA+GGG | - | chr6.3:39830004-39830023 | None:intergenic | 30.0% |
| ! | GATGTTAGTCTGAAAGAATT+TGG | + | chr6.3:39830143-39830162 | MS.gene060028:CDS | 30.0% |
| !!! | TCGACCGTATTTTAATAAGT+CGG | + | chr6.3:39831558-39831577 | MS.gene060028:CDS | 30.0% |
| AAACTTATGGTCGATTGTAC+CGG | + | chr6.3:39830089-39830108 | MS.gene060028:CDS | 35.0% | |
| AGTAACCATCTGGTAGAAAT+AGG | - | chr6.3:39831384-39831403 | None:intergenic | 35.0% | |
| ATGAATCATACAATCAGCGA+TGG | + | chr6.3:39830971-39830990 | MS.gene060028:CDS | 35.0% | |
| ATGTTTGGTTGCGTACTATT+AGG | + | chr6.3:39830318-39830337 | MS.gene060028:intron | 35.0% | |
| CGCAGATTTAATGGTTATGA+AGG | + | chr6.3:39831534-39831553 | MS.gene060028:CDS | 35.0% | |
| CTCTGTTATTCACAGTTAAG+AGG | + | chr6.3:39829835-39829854 | MS.gene060028:CDS | 35.0% | |
| GAGAGAAAGAAGTAAGAGTA+TGG | + | chr6.3:39830355-39830374 | MS.gene060028:intron | 35.0% | |
| GTATGATTGTAACCATATGC+AGG | + | chr6.3:39830907-39830926 | MS.gene060028:intron | 35.0% | |
| TAAATTGGGTTACATCCTCT+TGG | - | chr6.3:39830648-39830667 | None:intergenic | 35.0% | |
| TATACCTGAATAAGGACCAA+TGG | - | chr6.3:39830248-39830267 | None:intergenic | 35.0% | |
| TCTTACTTCTTTCTCTCTCA+AGG | - | chr6.3:39830352-39830371 | None:intergenic | 35.0% | |
| TTTCTACCAGATGGTTACTA+CGG | + | chr6.3:39831385-39831404 | MS.gene060028:CDS | 35.0% | |
| ! | GCATTTCTAAGAATGTCAAC+AGG | - | chr6.3:39830005-39830024 | None:intergenic | 35.0% |
| !! | ACATAGAGTGTTGTTGTAGT+TGG | - | chr6.3:39831249-39831268 | None:intergenic | 35.0% |
| !! | GTGGTTTCATTTTTGCTCTT+CGG | + | chr6.3:39830948-39830967 | MS.gene060028:CDS | 35.0% |
| !! | GTGTTTTATTATCCACTTGC+TGG | + | chr6.3:39830041-39830060 | MS.gene060028:CDS | 35.0% |
| !! | GTTAACCTATTTCTACCAGA+TGG | + | chr6.3:39831376-39831395 | MS.gene060028:CDS | 35.0% |
| !! | TTTGAAAACGTATCGACTCT+TGG | - | chr6.3:39829932-39829951 | None:intergenic | 35.0% |
| !!! | CGACCGTATTTTAATAAGTC+GGG | + | chr6.3:39831559-39831578 | MS.gene060028:CDS | 35.0% |
| CATGTCGTCTAAGGAAAAAG+TGG | - | chr6.3:39831161-39831180 | None:intergenic | 40.0% | |
| CCTTAGGAGAAATATCTCGA+GGG | + | chr6.3:39831020-39831039 | MS.gene060028:CDS | 40.0% | |
| GAGCTTCTTTATGATGTTCC+CGG | + | chr6.3:39830200-39830219 | MS.gene060028:CDS | 40.0% | |
| GCAATCAACCGCAGATTTAA+TGG | + | chr6.3:39831525-39831544 | MS.gene060028:CDS | 40.0% | |
| GCATGAACAGTCCATATTAG+AGG | + | chr6.3:39830506-39830525 | MS.gene060028:intron | 40.0% | |
| GGATTTGGAGATGTTGAGTT+GGG | + | chr6.3:39831613-39831632 | MS.gene060028:CDS | 40.0% | |
| TAAAGAAGCTCTTGCAAGCA+AGG | - | chr6.3:39830191-39830210 | None:intergenic | 40.0% | |
| TGGATTTGGAGATGTTGAGT+TGG | + | chr6.3:39831612-39831631 | MS.gene060028:CDS | 40.0% | |
| TTGATGGAGTCACCATTTCT+GGG | - | chr6.3:39829866-39829885 | None:intergenic | 40.0% | |
| TTGCACATGCTAAATCCAAG+AGG | + | chr6.3:39830630-39830649 | MS.gene060028:intron | 40.0% | |
| TTTGATGGAGTCACCATTTC+TGG | - | chr6.3:39829867-39829886 | None:intergenic | 40.0% | |
| ! | AAAGTGGTTCCTTTGTTGTC+TGG | - | chr6.3:39831145-39831164 | None:intergenic | 40.0% |
| ! | GATTTGGAGATGTTGAGTTG+GGG | + | chr6.3:39831614-39831633 | MS.gene060028:CDS | 40.0% |
| ! | TAGTTTTCCTGCAGTTGTGA+CGG | - | chr6.3:39831434-39831453 | None:intergenic | 40.0% |
| ! | TTTTCCGGGTACCTCTAATA+TGG | - | chr6.3:39830520-39830539 | None:intergenic | 40.0% |
| !! | ATTTGGAGATGTTGAGTTGG+GGG | + | chr6.3:39831615-39831634 | MS.gene060028:CDS | 40.0% |
| !! | GTAGAGAGCTTTTAAGTGCA+AGG | + | chr6.3:39831074-39831093 | MS.gene060028:CDS | 40.0% |
| !! | TGTTGTTGTAGTTGGTGAGA+TGG | - | chr6.3:39831241-39831260 | None:intergenic | 40.0% |
| !! | TTCCTTTGTTGTCTGGTTCT+GGG | - | chr6.3:39831138-39831157 | None:intergenic | 40.0% |
| !!! | CACTTTTTCCTTAGACGACA+TGG | + | chr6.3:39831159-39831178 | MS.gene060028:CDS | 40.0% |
| AAAAGCTCTCTACACCACAC+AGG | - | chr6.3:39831067-39831086 | None:intergenic | 45.0% | |
| AACCGTCAATCTTACCTGTG+TGG | + | chr6.3:39831050-39831069 | MS.gene060028:CDS | 45.0% | |
| AGATGTGCTTCACACTCCAT+TGG | + | chr6.3:39830229-39830248 | MS.gene060028:CDS | 45.0% | |
| AGCTCTTGCAAGCAAGGAAA+TGG | - | chr6.3:39830185-39830204 | None:intergenic | 45.0% | |
| AGGTCCTGGTAGGAAACTTA+TGG | + | chr6.3:39830076-39830095 | MS.gene060028:CDS | 45.0% | |
| CACCACACAGGTAAGATTGA+CGG | - | chr6.3:39831055-39831074 | None:intergenic | 45.0% | |
| CACTCCATTGGTCCTTATTC+AGG | + | chr6.3:39830241-39830260 | MS.gene060028:CDS | 45.0% | |
| CATACAATCAGCGATGGATC+AGG | + | chr6.3:39830977-39830996 | MS.gene060028:CDS | 45.0% | |
| CCCTCGAGATATTTCTCCTA+AGG | - | chr6.3:39831023-39831042 | None:intergenic | 45.0% | |
| GATGTTACACGTGCTGGATT+TGG | + | chr6.3:39831598-39831617 | MS.gene060028:CDS | 45.0% | |
| GCATTACCGTAGTAACCATC+TGG | - | chr6.3:39831394-39831413 | None:intergenic | 45.0% | |
| GCCTTAGGAGAAATATCTCG+AGG | + | chr6.3:39831019-39831038 | MS.gene060028:CDS | 45.0% | |
| GGGTCTTTCCCTACCATAAT+TGG | - | chr6.3:39829984-39830003 | None:intergenic | 45.0% | |
| GTCCACCACACTTTCTTCTT+TGG | + | chr6.3:39831181-39831200 | MS.gene060028:CDS | 45.0% | |
| GTGAAGCACATCTGTAGAAC+CGG | - | chr6.3:39830222-39830241 | None:intergenic | 45.0% | |
| GTTCAGTTCATGAGTGCCTT+AGG | + | chr6.3:39831004-39831023 | MS.gene060028:CDS | 45.0% | |
| TCGACCATAAGTTTCCTACC+AGG | - | chr6.3:39830083-39830102 | None:intergenic | 45.0% | |
| TCTTGCAAGCAAGGAAATGG+AGG | - | chr6.3:39830182-39830201 | None:intergenic | 45.0% | |
| TGAAGCACATCTGTAGAACC+GGG | - | chr6.3:39830221-39830240 | None:intergenic | 45.0% | |
| TGAGTCGTGTTACCTGCATA+TGG | - | chr6.3:39830922-39830941 | None:intergenic | 45.0% | |
| ! | ATCCACTTGCTGGTAGATTG+AGG | + | chr6.3:39830051-39830070 | MS.gene060028:CDS | 45.0% |
| ! | GTTCCTTTGTTGTCTGGTTC+TGG | - | chr6.3:39831139-39831158 | None:intergenic | 45.0% |
| ! | TAAGAGGCGTAACCCAGAAA+TGG | + | chr6.3:39829851-39829870 | MS.gene060028:CDS | 45.0% |
| ! | TCCACTTGCTGGTAGATTGA+GGG | + | chr6.3:39830052-39830071 | MS.gene060028:CDS | 45.0% |
| !! | CAGTCCATATTAGAGGTACC+CGG | + | chr6.3:39830513-39830532 | MS.gene060028:intron | 45.0% |
| !! | GTTGTAGTTGGTGAGATGGA+AGG | - | chr6.3:39831237-39831256 | None:intergenic | 45.0% |
| !! | TCATGAGGTGTGGGTTTTGA+TGG | - | chr6.3:39829882-39829901 | None:intergenic | 45.0% |
| AGTTGGGGGAAAGCTGTGTA+TGG | + | chr6.3:39831629-39831648 | MS.gene060028:CDS | 50.0% | |
| ATGGTCGATTGTACCGGAGA+AGG | + | chr6.3:39830095-39830114 | MS.gene060028:CDS | 50.0% | |
| CAGGTAACACGACTCAAGTG+TGG | + | chr6.3:39830926-39830945 | MS.gene060028:intron | 50.0% | |
| CTTGCTGGTAGATTGAGGGA+AGG | + | chr6.3:39830056-39830075 | MS.gene060028:CDS | 50.0% | |
| GACCCAGAACCAGACAACAA+AGG | + | chr6.3:39831133-39831152 | MS.gene060028:CDS | 50.0% | |
| GTAACACGACTCAAGTGTGG+TGG | + | chr6.3:39830929-39830948 | MS.gene060028:CDS | 50.0% | |
| GTGTCTGATGTTACACGTGC+TGG | + | chr6.3:39831592-39831611 | MS.gene060028:CDS | 50.0% | |
| TCCCTCAATCTACCAGCAAG+TGG | - | chr6.3:39830056-39830075 | None:intergenic | 50.0% | |
| TGATGAGTGCACGTCACTCT+TGG | - | chr6.3:39831106-39831125 | None:intergenic | 50.0% | |
| TGGGGCCAAAGAAGAAAGTG+TGG | - | chr6.3:39831189-39831208 | None:intergenic | 50.0% | |
| ! | GGCCAAAGAAGAAAGTGTGG+TGG | - | chr6.3:39831186-39831205 | None:intergenic | 50.0% |
| AGTGCGAATTTCCGCCACCT+CGG | - | chr6.3:39831212-39831231 | None:intergenic | 55.0% | |
| GAGTGCACGTCACTCTTGGT+GGG | - | chr6.3:39831102-39831121 | None:intergenic | 55.0% | |
| GATTGAGGGAAGGTCCTGGT+AGG | + | chr6.3:39830066-39830085 | MS.gene060028:CDS | 55.0% | |
| GGTAGATTGAGGGAAGGTCC+TGG | + | chr6.3:39830062-39830081 | MS.gene060028:CDS | 55.0% | |
| TGAGTGCACGTCACTCTTGG+TGG | - | chr6.3:39831103-39831122 | None:intergenic | 55.0% | |
| TGGGGGAAAGCTGTGTATGG+AGG | + | chr6.3:39831632-39831651 | MS.gene060028:CDS | 55.0% | |
| TTTCTTCTTTGGCCCCACCG+AGG | + | chr6.3:39831192-39831211 | MS.gene060028:CDS | 55.0% | |
| !! | GTGGTGGACCATGTCGTCTA+AGG | - | chr6.3:39831170-39831189 | None:intergenic | 55.0% |
| CGAATTTCCGCCACCTCGGT+GGG | - | chr6.3:39831208-39831227 | None:intergenic | 60.0% | |
| GAATTTCCGCCACCTCGGTG+GGG | - | chr6.3:39831207-39831226 | None:intergenic | 60.0% | |
| TCTGTCGCCGTCACAACTGC+AGG | + | chr6.3:39831424-39831443 | MS.gene060028:CDS | 60.0% | |
| CTTCTTTGGCCCCACCGAGG+TGG | + | chr6.3:39831195-39831214 | MS.gene060028:CDS | 65.0% | |
| GCGAATTTCCGCCACCTCGG+TGG | - | chr6.3:39831209-39831228 | None:intergenic | 65.0% | |
| CTTTGGCCCCACCGAGGTGG+CGG | + | chr6.3:39831198-39831217 | MS.gene060028:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6.3 | gene | 39829825 | 39831663 | 39829825 | ID=MS.gene060028 |
| chr6.3 | mRNA | 39829825 | 39831663 | 39829825 | ID=MS.gene060028.t1;Parent=MS.gene060028 |
| chr6.3 | exon | 39829825 | 39830262 | 39829825 | ID=MS.gene060028.t1.exon1;Parent=MS.gene060028.t1 |
| chr6.3 | CDS | 39829825 | 39830262 | 39829825 | ID=cds.MS.gene060028.t1;Parent=MS.gene060028.t1 |
| chr6.3 | exon | 39830929 | 39831663 | 39830929 | ID=MS.gene060028.t1.exon2;Parent=MS.gene060028.t1 |
| chr6.3 | CDS | 39830929 | 39831663 | 39830929 | ID=cds.MS.gene060028.t1;Parent=MS.gene060028.t1 |
| Gene Sequence |
| Protein sequence |
