AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene21693


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene21693.t1 MTR_5g008750 98.162 272 4 1 1 271 1 272 0.0 547
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene21693.t1 AT1G71500 81.250 208 39 0 63 270 79 286 1.83e-118 341

Find 74 sgRNAs with CRISPR-Local

Find 165 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AACGGTAAAGCAGCTGTTAT+TGG 0.227563 5.2:+2599881 MS.gene21693:CDS
TTTGAAGGGGACAGGTTTCT+TGG 0.252403 5.2:+2599949 MS.gene21693:CDS
AAATATTTGCCATTGAAAAT+AGG 0.303614 5.2:+2598313 MS.gene21693:CDS
TATTGGATTCCTTCTGTTGT+TGG 0.321162 5.2:+2599898 MS.gene21693:CDS
GATGAGAGTCAACTGGGATT+TGG 0.344981 5.2:+2599833 MS.gene21693:CDS
ACTCTCAGAACAGGATTGTT+TGG 0.366935 5.2:-2599530 None:intergenic
GAAGAGCAGGAGAGGGATAG+AGG 0.369307 5.2:-2598039 None:intergenic
AGCGCCGTCACCGGCACAAC+CGG 0.370822 5.2:-2598222 None:intergenic
TGACCAATCGCATAGACTTT+GGG 0.389283 5.2:-2598143 None:intergenic
GTGACCAATCGCATAGACTT+TGG 0.393331 5.2:-2598144 None:intergenic
AGTGTGTGTTTGAGAAGAGC+AGG 0.401321 5.2:-2598052 None:intergenic
TGGCGGGAGAGGAGAAGAAA+AGG 0.404281 5.2:-2598102 None:intergenic
GAGTTCTAACACCTGCTTTG+AGG 0.431159 5.2:+2599549 MS.gene21693:CDS
AAGAGCAGGAGAGGGATAGA+GGG 0.443083 5.2:-2598038 None:intergenic
TAGAGGGTTGGTAGCGGCCA+TGG 0.452401 5.2:-2598022 None:intergenic
CGGTGACGGCGCTGCCGAGA+GGG 0.459160 5.2:+2598232 MS.gene21693:CDS
AACTGGGATTTGGTTTCAAT+AGG 0.460026 5.2:+2599843 MS.gene21693:CDS
AGCGGTTAGAGTGGCGGGAG+AGG 0.473023 5.2:-2598113 None:intergenic
GGTGGTTGATGAGAGTCAAC+TGG 0.480124 5.2:+2599826 MS.gene21693:CDS
AGCACATTTGATCTAAGAAC+AGG 0.481228 5.2:+2599488 MS.gene21693:CDS
TCAGAATAAGCACCTTCAGC+AGG 0.482430 5.2:-2598339 None:intergenic
GGTGTTAGAACTCTCAGAAC+AGG 0.487394 5.2:-2599539 None:intergenic
GTGTTTGAGAAGAGCAGGAG+AGG 0.489201 5.2:-2598047 None:intergenic
TCTAAGAACAGGAGAGATCA+AGG 0.490541 5.2:+2599499 MS.gene21693:CDS
GCGATTGGTCACAACGTGTA+AGG 0.493163 5.2:+2598155 MS.gene21693:CDS
TGCGTAGCGGTTAGAGTGGC+GGG 0.497650 5.2:-2598118 None:intergenic
CTACTGAAATTCTCTTTAGC+GGG 0.502112 5.2:+2599651 MS.gene21693:CDS
GCTGAAGGTGCTTATTCTGA+GGG 0.503715 5.2:+2598342 MS.gene21693:CDS
GTAACTAACCTGTGTGAGCT+TGG 0.505958 5.2:-2598376 None:intergenic
GCAGGAGAGGGATAGAGGGT+TGG 0.508740 5.2:-2598034 None:intergenic
TGCTGAAGGTGCTTATTCTG+AGG 0.509178 5.2:+2598341 MS.gene21693:CDS
TGTTTGAGAAGAGCAGGAGA+GGG 0.509351 5.2:-2598046 None:intergenic
CGGCGCTGCCGAGAGGGGAG+AGG 0.510141 5.2:+2598238 MS.gene21693:CDS
TATGACTGTTTAGGTCAGAA+TGG 0.512563 5.2:+2599805 MS.gene21693:intron
TCAAATGTGCTGTCAGTTGT+TGG 0.515547 5.2:-2599476 None:intergenic
AAACTGGGTTCCGGTTGTGC+CGG 0.521653 5.2:+2598212 MS.gene21693:CDS
ACATCGCTTGCTGTTATACC+AGG 0.526210 5.2:-2599683 None:intergenic
ACAAAGAGGTTCCTCAAAGC+AGG 0.529140 5.2:-2599560 None:intergenic
GAAAAGGTTTACGTGGGAGA+AGG 0.529528 5.2:-2598086 None:intergenic
AGGAGAAGAAAAGGTTTACG+TGG 0.531404 5.2:-2598093 None:intergenic
AGCATCAGATTTGAAACCTC+CGG 0.532026 5.2:-2599627 None:intergenic
AATATTTATATCAGCATCAC+CGG 0.534811 5.2:+2599608 MS.gene21693:CDS
CCTCTCGGCAGCGCCGTCAC+CGG 0.535950 5.2:-2598231 None:intergenic
GGTTCCGGTTGTGCCGGTGA+CGG 0.540591 5.2:+2598218 MS.gene21693:CDS
GCTACTGAAATTCTCTTTAG+CGG 0.547042 5.2:+2599650 MS.gene21693:CDS
GAGGGATAGAGGGTTGGTAG+CGG 0.549456 5.2:-2598028 None:intergenic
GTGCGTAGCGGTTAGAGTGG+CGG 0.551558 5.2:-2598119 None:intergenic
CAAATGTGCTGTCAGTTGTT+GGG 0.553575 5.2:-2599475 None:intergenic
TTACGTGGGAGAAGGAAATG+AGG 0.558204 5.2:-2598078 None:intergenic
GGAGAAGAAAAGGTTTACGT+GGG 0.562615 5.2:-2598092 None:intergenic
CCGGTGACGGCGCTGCCGAG+AGG 0.566317 5.2:+2598231 MS.gene21693:CDS
CAGAATAAGCACCTTCAGCA+GGG 0.566319 5.2:-2598338 None:intergenic
ACGCCCAAAGTCTATGCGAT+TGG 0.567023 5.2:+2598140 MS.gene21693:CDS
AGGCGTGTCATAATTCAAGA+AGG 0.569370 5.2:+2598258 MS.gene21693:CDS
TTTAGCGGGAAGGCTCAGCC+TGG 0.582087 5.2:+2599665 MS.gene21693:CDS
TGAAATTCTCTTTAGCGGGA+AGG 0.583788 5.2:+2599655 MS.gene21693:CDS
GAAAATAGGTCCCCTGCTGA+AGG 0.583894 5.2:+2598327 MS.gene21693:CDS
GGCGTGTCATAATTCAAGAA+GGG 0.590708 5.2:+2598259 MS.gene21693:CDS
GGTGACGGCGCTGCCGAGAG+GGG 0.594296 5.2:+2598233 MS.gene21693:CDS
GTTCGAAATCCAACAACAGA+AGG 0.602476 5.2:-2599907 None:intergenic
GGCGTGCGTAGCGGTTAGAG+TGG 0.612488 5.2:-2598122 None:intergenic
ATGACACGCCTCTCCCCTCT+CGG 0.613589 5.2:-2598246 None:intergenic
TTTGGACGACTCTTCAGCCA+CGG 0.618145 5.2:-2598190 None:intergenic
GCGTGTCATAATTCAAGAAG+GGG 0.628961 5.2:+2598260 MS.gene21693:CDS
AAGCGATGTCAATGTGGACG+AGG 0.630134 5.2:+2599697 MS.gene21693:CDS
TAGACTTTGGGCGTGCGTAG+CGG 0.631955 5.2:-2598131 None:intergenic
TAAGGCAAGTCAAGTGTCCG+TGG 0.635413 5.2:+2598173 MS.gene21693:CDS
AGAATAAGCACCTTCAGCAG+GGG 0.654961 5.2:-2598337 None:intergenic
GAACAGGAGAGATCAAGGAA+TGG 0.658017 5.2:+2599504 MS.gene21693:CDS
GACTGTTTAGGTCAGAATGG+TGG 0.660971 5.2:+2599808 MS.gene21693:intron
AACAGCAAGCGATGTCAATG+TGG 0.661153 5.2:+2599691 MS.gene21693:CDS
AGGAAGAACGAAATAATCAA+CGG 0.661244 5.2:+2599863 MS.gene21693:CDS
ATTTATATCAGCATCACCGG+AGG 0.666199 5.2:+2599611 MS.gene21693:CDS
GTGGTTGATGAGAGTCAACT+GGG 0.691875 5.2:+2599827 MS.gene21693:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAAGCACTTATTAAAATAAT+TGG + chr5.2:2598466-2598485 MS.gene21693:intron 15.0%
!!! TATTTTTTTTATGACTGTTT+AGG + chr5.2:2599796-2599815 MS.gene21693:intron 15.0%
!!! TCTTTTCATTTACAAATTTT+TGG - chr5.2:2598968-2598987 None:intergenic 15.0%
!! AAAAGAAAGAAGCAAAAATT+AGG + chr5.2:2598982-2599001 MS.gene21693:intron 20.0%
!! AAATATTTGCCATTGAAAAT+AGG + chr5.2:2598313-2598332 MS.gene21693:CDS 20.0%
!! ACATTCTGATCAATTATATA+TGG + chr5.2:2599736-2599755 MS.gene21693:intron 20.0%
!! ACTAATTAATAACTTTGCAA+GGG - chr5.2:2599382-2599401 None:intergenic 20.0%
!! AGTCATTGAATTTCAAAATA+AGG - chr5.2:2598746-2598765 None:intergenic 20.0%
!!! ATTTTGAAATTCAATGACTA+TGG + chr5.2:2598747-2598766 MS.gene21693:intron 20.0%
! AAATCTGACCTAATTAAATC+AGG + chr5.2:2599027-2599046 MS.gene21693:intron 25.0%
! AATATTTATATCAGCATCAC+CGG + chr5.2:2599608-2599627 MS.gene21693:CDS 25.0%
! AATCTGACCTAATTAAATCA+GGG + chr5.2:2599028-2599047 MS.gene21693:intron 25.0%
! ACTATTTCCCTGATTTAATT+AGG - chr5.2:2599038-2599057 None:intergenic 25.0%
! AGAAATATTTGACACGTTAT+AGG + chr5.2:2598672-2598691 MS.gene21693:intron 25.0%
! CAAAGAGAAAACAAAACAAT+TGG - chr5.2:2599435-2599454 None:intergenic 25.0%
! GACTAATTAATAACTTTGCA+AGG - chr5.2:2599383-2599402 None:intergenic 25.0%
! TTAATATAAGCTTAACCCTA+AGG - chr5.2:2598642-2598661 None:intergenic 25.0%
! TTTCTTAGGATAATGTCTTT+AGG + chr5.2:2598399-2598418 MS.gene21693:intron 25.0%
!! AATGCATGATAATGTCAATT+GGG + chr5.2:2599280-2599299 MS.gene21693:intron 25.0%
!! ACTGAAAATCTGATTTTCAT+TGG + chr5.2:2598821-2598840 MS.gene21693:intron 25.0%
!! CCTATCAAAACAACTTTTAT+AGG + chr5.2:2598426-2598445 MS.gene21693:intron 25.0%
!! TCTTCATCTTTGATTTACTT+CGG - chr5.2:2599065-2599084 None:intergenic 25.0%
!!! CCTATAAAAGTTGTTTTGAT+AGG - chr5.2:2598429-2598448 None:intergenic 25.0%
!!! GGTCTTTTTTTAAGCAAAAT+CGG + chr5.2:2598862-2598881 MS.gene21693:intron 25.0%
AACAATCAAAACTACTAGGT+TGG + chr5.2:2598910-2598929 MS.gene21693:intron 30.0%
AATTAATAACTTTGCAAGGG+TGG - chr5.2:2599379-2599398 None:intergenic 30.0%
AGGAAGAACGAAATAATCAA+CGG + chr5.2:2599863-2599882 MS.gene21693:CDS 30.0%
ATGTTCGTACATATCACAAT+TGG + chr5.2:2598703-2598722 MS.gene21693:intron 30.0%
TATATATGGACTCATTGCAA+TGG + chr5.2:2599750-2599769 MS.gene21693:intron 30.0%
TGTCAACAATCAAAACTACT+AGG + chr5.2:2598906-2598925 MS.gene21693:intron 30.0%
TGTTCGTACATATCACAATT+GGG + chr5.2:2598704-2598723 MS.gene21693:intron 30.0%
! CAATGCATGATAATGTCAAT+TGG + chr5.2:2599279-2599298 MS.gene21693:intron 30.0%
! TTCGAACTTTTAACAGGTAA+GGG + chr5.2:2599923-2599942 MS.gene21693:CDS 30.0%
! TTGGATTTCGAACTTTTAAC+AGG + chr5.2:2599917-2599936 MS.gene21693:CDS 30.0%
! TTTCGAACTTTTAACAGGTA+AGG + chr5.2:2599922-2599941 MS.gene21693:CDS 30.0%
! TTTTGACAGGATATACAAAG+AGG - chr5.2:2599577-2599596 None:intergenic 30.0%
!!! GGTCAGATTTTTTCAACAAT+AGG - chr5.2:2599017-2599036 None:intergenic 30.0%
!!! TTGTTTTGTTTTCTCTTTGC+AGG + chr5.2:2599436-2599455 MS.gene21693:intron 30.0%
ACCCTAAGGAAAGACTAATT+CGG - chr5.2:2598628-2598647 None:intergenic 35.0%
AGCACATTTGATCTAAGAAC+AGG + chr5.2:2599488-2599507 MS.gene21693:CDS 35.0%
CTACTGAAATTCTCTTTAGC+GGG + chr5.2:2599651-2599670 MS.gene21693:CDS 35.0%
GCTACTGAAATTCTCTTTAG+CGG + chr5.2:2599650-2599669 MS.gene21693:CDS 35.0%
TATGACTGTTTAGGTCAGAA+TGG + chr5.2:2599805-2599824 MS.gene21693:intron 35.0%
TATTGGATTCCTTCTGTTGT+TGG + chr5.2:2599898-2599917 MS.gene21693:CDS 35.0%
! AACTGGGATTTGGTTTCAAT+AGG + chr5.2:2599843-2599862 MS.gene21693:CDS 35.0%
! CACAGGTTAGTTACTTTCTT+AGG + chr5.2:2598385-2598404 MS.gene21693:intron 35.0%
! CATCTTTGATTTACTTCGGT+GGG - chr5.2:2599061-2599080 None:intergenic 35.0%
! TCATCTTTGATTTACTTCGG+TGG - chr5.2:2599062-2599081 None:intergenic 35.0%
!! TCCGAATTAGTCTTTCCTTA+GGG + chr5.2:2598624-2598643 MS.gene21693:intron 35.0%
!! TTTGTTTTCTCTTTGCAGGA+TGG + chr5.2:2599440-2599459 MS.gene21693:intron 35.0%
!!! TTTTGTTCGTCTGTTTTGAC+AGG - chr5.2:2599590-2599609 None:intergenic 35.0%
AACGGTAAAGCAGCTGTTAT+TGG + chr5.2:2599881-2599900 MS.gene21693:CDS 40.0%
AACGTACACGAAAAAGGTCT+TGG - chr5.2:2599254-2599273 None:intergenic 40.0%
ACGTACACGAAAAAGGTCTT+GGG - chr5.2:2599253-2599272 None:intergenic 40.0%
ACTCTCAGAACAGGATTGTT+TGG - chr5.2:2599533-2599552 None:intergenic 40.0%
ACTTATATGATTGCCCACGT+GGG + chr5.2:2598504-2598523 MS.gene21693:intron 40.0%
AGGAGAAGAAAAGGTTTACG+TGG - chr5.2:2598096-2598115 None:intergenic 40.0%
AGGCGTGTCATAATTCAAGA+AGG + chr5.2:2598258-2598277 MS.gene21693:CDS 40.0%
ATTTATATCAGCATCACCGG+AGG + chr5.2:2599611-2599630 MS.gene21693:CDS 40.0%
CAAATGTGCTGTCAGTTGTT+GGG - chr5.2:2599478-2599497 None:intergenic 40.0%
CTAAGGAAAGACTAATTCGG+AGG - chr5.2:2598625-2598644 None:intergenic 40.0%
CTTCACCATAGTCTAAACCT+CGG + chr5.2:2599172-2599191 MS.gene21693:intron 40.0%
GATGAAGATGCCATATGAAG+CGG + chr5.2:2599077-2599096 MS.gene21693:intron 40.0%
GCGTGTCATAATTCAAGAAG+GGG + chr5.2:2598260-2598279 MS.gene21693:CDS 40.0%
GGAGAAGAAAAGGTTTACGT+GGG - chr5.2:2598095-2598114 None:intergenic 40.0%
GGCGTGTCATAATTCAAGAA+GGG + chr5.2:2598259-2598278 MS.gene21693:CDS 40.0%
GTTCGAAATCCAACAACAGA+AGG - chr5.2:2599910-2599929 None:intergenic 40.0%
TACTGATAAGCCGCTTCATA+TGG - chr5.2:2599090-2599109 None:intergenic 40.0%
TCAAATGTGCTGTCAGTTGT+TGG - chr5.2:2599479-2599498 None:intergenic 40.0%
TCTAAGAACAGGAGAGATCA+AGG + chr5.2:2599499-2599518 MS.gene21693:CDS 40.0%
TGAAATTCTCTTTAGCGGGA+AGG + chr5.2:2599655-2599674 MS.gene21693:CDS 40.0%
TGAAGAGTCGTCCAAAAACT+GGG + chr5.2:2598197-2598216 MS.gene21693:CDS 40.0%
TGACCAATCGCATAGACTTT+GGG - chr5.2:2598146-2598165 None:intergenic 40.0%
TGGAAAGAAGCGATTGCTAT+AGG + chr5.2:2598841-2598860 MS.gene21693:intron 40.0%
! AACAGGTAAGGGTCTTTTGA+AGG + chr5.2:2599934-2599953 MS.gene21693:CDS 40.0%
! ACAGGTAAGGGTCTTTTGAA+GGG + chr5.2:2599935-2599954 MS.gene21693:CDS 40.0%
! AGCATCAGATTTGAAACCTC+CGG - chr5.2:2599630-2599649 None:intergenic 40.0%
!! CTCCGAATTAGTCTTTCCTT+AGG + chr5.2:2598623-2598642 MS.gene21693:intron 40.0%
!! GGGAGACTATATTGCTTTTG+TGG + chr5.2:2598280-2598299 MS.gene21693:CDS 40.0%
AACAGCAAGCGATGTCAATG+TGG + chr5.2:2599691-2599710 MS.gene21693:CDS 45.0%
ACAAAGAGGTTCCTCAAAGC+AGG - chr5.2:2599563-2599582 None:intergenic 45.0%
ACACGAAAAAGGTCTTGGGT+TGG - chr5.2:2599249-2599268 None:intergenic 45.0%
AGAATAAGCACCTTCAGCAG+GGG - chr5.2:2598340-2598359 None:intergenic 45.0%
AGTGTGTGTTTGAGAAGAGC+AGG - chr5.2:2598055-2598074 None:intergenic 45.0%
CACGAAAAAGGTCTTGGGTT+GGG - chr5.2:2599248-2599267 None:intergenic 45.0%
CACTTATATGATTGCCCACG+TGG + chr5.2:2598503-2598522 MS.gene21693:intron 45.0%
CAGAATAAGCACCTTCAGCA+GGG - chr5.2:2598341-2598360 None:intergenic 45.0%
CGAGGTTTAGACTATGGTGA+AGG - chr5.2:2599174-2599193 None:intergenic 45.0%
CTGAAGAGTCGTCCAAAAAC+TGG + chr5.2:2598196-2598215 MS.gene21693:CDS 45.0%
GAAAAATGCCAAGCTCACAC+AGG + chr5.2:2598368-2598387 MS.gene21693:CDS 45.0%
GAAAAGGTTTACGTGGGAGA+AGG - chr5.2:2598089-2598108 None:intergenic 45.0%
GAACAGGAGAGATCAAGGAA+TGG + chr5.2:2599504-2599523 MS.gene21693:CDS 45.0%
GAAGACCGAGGTTTAGACTA+TGG - chr5.2:2599180-2599199 None:intergenic 45.0%
GACTGTTTAGGTCAGAATGG+TGG + chr5.2:2599808-2599827 MS.gene21693:intron 45.0%
GATGAGAGTCAACTGGGATT+TGG + chr5.2:2599833-2599852 MS.gene21693:CDS 45.0%
GATGAGTCTGAGAACTTGAG+AGG - chr5.2:2598561-2598580 None:intergenic 45.0%
GCACACAACGTACACGAAAA+AGG - chr5.2:2599260-2599279 None:intergenic 45.0%
GGTGTTAGAACTCTCAGAAC+AGG - chr5.2:2599542-2599561 None:intergenic 45.0%
GTAACTAACCTGTGTGAGCT+TGG - chr5.2:2598379-2598398 None:intergenic 45.0%
GTGACCAATCGCATAGACTT+TGG - chr5.2:2598147-2598166 None:intergenic 45.0%
TCAAGTTCTCAGACTCATCC+TGG + chr5.2:2598562-2598581 MS.gene21693:intron 45.0%
TCAGAATAAGCACCTTCAGC+AGG - chr5.2:2598342-2598361 None:intergenic 45.0%
TGATTTGAGCCAAGGGTTGA+AGG - chr5.2:2599216-2599235 None:intergenic 45.0%
TGTTTGAGAAGAGCAGGAGA+GGG - chr5.2:2598049-2598068 None:intergenic 45.0%
TTACGTGGGAGAAGGAAATG+AGG - chr5.2:2598081-2598100 None:intergenic 45.0%
TTTGAAGGGGACAGGTTTCT+TGG + chr5.2:2599949-2599968 MS.gene21693:CDS 45.0%
! AGCAGGGGACCTATTTTCAA+TGG - chr5.2:2598325-2598344 None:intergenic 45.0%
! GAGTTCTAACACCTGCTTTG+AGG + chr5.2:2599549-2599568 MS.gene21693:CDS 45.0%
!! ACATCGCTTGCTGTTATACC+AGG - chr5.2:2599686-2599705 None:intergenic 45.0%
!! CAGGTAAGGGTCTTTTGAAG+GGG + chr5.2:2599936-2599955 MS.gene21693:CDS 45.0%
!! GCTGAAGGTGCTTATTCTGA+GGG + chr5.2:2598342-2598361 MS.gene21693:CDS 45.0%
!! GTGGTTGATGAGAGTCAACT+GGG + chr5.2:2599827-2599846 MS.gene21693:CDS 45.0%
!! TGCTGAAGGTGCTTATTCTG+AGG + chr5.2:2598341-2598360 MS.gene21693:CDS 45.0%
AAGAGCAGGAGAGGGATAGA+GGG - chr5.2:2598041-2598060 None:intergenic 50.0%
AAGCGATGTCAATGTGGACG+AGG + chr5.2:2599697-2599716 MS.gene21693:CDS 50.0%
ACGCCCAAAGTCTATGCGAT+TGG + chr5.2:2598140-2598159 MS.gene21693:CDS 50.0%
ATATGATTGCCCACGTGGGT+TGG + chr5.2:2598508-2598527 MS.gene21693:intron 50.0%
CCAAGGGTTGAAGGAGTTAG+AGG - chr5.2:2599207-2599226 None:intergenic 50.0%
CCTCTAACTCCTTCAACCCT+TGG + chr5.2:2599204-2599223 MS.gene21693:intron 50.0%
GAAAATAGGTCCCCTGCTGA+AGG + chr5.2:2598327-2598346 MS.gene21693:CDS 50.0%
GTCGTCCAAAAACTGGGTTC+CGG + chr5.2:2598203-2598222 MS.gene21693:CDS 50.0%
GTGTTTGAGAAGAGCAGGAG+AGG - chr5.2:2598050-2598069 None:intergenic 50.0%
GTTAGAGGACTTGAAGACCG+AGG - chr5.2:2599192-2599211 None:intergenic 50.0%
TAAGGCAAGTCAAGTGTCCG+TGG + chr5.2:2598173-2598192 MS.gene21693:CDS 50.0%
TTTGGACGACTCTTCAGCCA+CGG - chr5.2:2598193-2598212 None:intergenic 50.0%
! CACAACCGGAACCCAGTTTT+TGG - chr5.2:2598211-2598230 None:intergenic 50.0%
! GCGATTGGTCACAACGTGTA+AGG + chr5.2:2598155-2598174 MS.gene21693:CDS 50.0%
!! AAGGGTCTTTTGAAGGGGAC+AGG + chr5.2:2599941-2599960 MS.gene21693:CDS 50.0%
!! AGCTCAGCTGATTTGAGCCA+AGG - chr5.2:2599224-2599243 None:intergenic 50.0%
!! ATCCTGGTGCCGGTTTATGT+GGG + chr5.2:2598578-2598597 MS.gene21693:intron 50.0%
!! GCTCAGCTGATTTGAGCCAA+GGG - chr5.2:2599223-2599242 None:intergenic 50.0%
!! GGTGGTTGATGAGAGTCAAC+TGG + chr5.2:2599826-2599845 MS.gene21693:CDS 50.0%
AAACTGGGTTCCGGTTGTGC+CGG + chr5.2:2598212-2598231 MS.gene21693:CDS 55.0%
GAAGAGCAGGAGAGGGATAG+AGG - chr5.2:2598042-2598061 None:intergenic 55.0%
TAGACTTTGGGCGTGCGTAG+CGG - chr5.2:2598134-2598153 None:intergenic 55.0%
TCTCAGACTCATCCTGGTGC+CGG + chr5.2:2598568-2598587 MS.gene21693:intron 55.0%
TGGCGGGAGAGGAGAAGAAA+AGG - chr5.2:2598105-2598124 None:intergenic 55.0%
!! CATCCTGGTGCCGGTTTATG+TGG + chr5.2:2598577-2598596 MS.gene21693:intron 55.0%
!! GAGGGATAGAGGGTTGGTAG+CGG - chr5.2:2598031-2598050 None:intergenic 55.0%
ACCACCAGACCAACCCACGT+GGG - chr5.2:2598520-2598539 None:intergenic 60.0%
ATGACACGCCTCTCCCCTCT+CGG - chr5.2:2598249-2598268 None:intergenic 60.0%
GCAGGAGAGGGATAGAGGGT+TGG - chr5.2:2598037-2598056 None:intergenic 60.0%
GGACCAATCCAACCGTCCAC+CGG - chr5.2:2598604-2598623 None:intergenic 60.0%
GGTTTATGTGGGCCGGTGGA+CGG + chr5.2:2598589-2598608 MS.gene21693:intron 60.0%
GTCCACCGGCCCACATAAAC+CGG - chr5.2:2598590-2598609 None:intergenic 60.0%
GTGCGTAGCGGTTAGAGTGG+CGG - chr5.2:2598122-2598141 None:intergenic 60.0%
TGCGTAGCGGTTAGAGTGGC+GGG - chr5.2:2598121-2598140 None:intergenic 60.0%
TTTAGCGGGAAGGCTCAGCC+TGG + chr5.2:2599665-2599684 MS.gene21693:CDS 60.0%
!! ATTGCCCACGTGGGTTGGTC+TGG + chr5.2:2598513-2598532 MS.gene21693:intron 60.0%
!! TGGTGCCGGTTTATGTGGGC+CGG + chr5.2:2598582-2598601 MS.gene21693:intron 60.0%
CACCACCAGACCAACCCACG+TGG - chr5.2:2598521-2598540 None:intergenic 65.0%
GGCCCACATAAACCGGCACC+AGG - chr5.2:2598583-2598602 None:intergenic 65.0%
GGCGTGCGTAGCGGTTAGAG+TGG - chr5.2:2598125-2598144 None:intergenic 65.0%
TATGTGGGCCGGTGGACGGT+TGG + chr5.2:2598593-2598612 MS.gene21693:intron 65.0%
! AGCGGTTAGAGTGGCGGGAG+AGG - chr5.2:2598116-2598135 None:intergenic 65.0%
! GGTTCCGGTTGTGCCGGTGA+CGG + chr5.2:2598218-2598237 MS.gene21693:CDS 65.0%
!! TGCCGGTTTATGTGGGCCGG+TGG + chr5.2:2598585-2598604 MS.gene21693:intron 65.0%
AGCGCCGTCACCGGCACAAC+CGG - chr5.2:2598225-2598244 None:intergenic 70.0%
GGGCCGGTGGACGGTTGGAT+TGG + chr5.2:2598598-2598617 MS.gene21693:intron 70.0%
!! GCCCACGTGGGTTGGTCTGG+TGG + chr5.2:2598516-2598535 MS.gene21693:intron 70.0%
CCTCTCGGCAGCGCCGTCAC+CGG - chr5.2:2598234-2598253 None:intergenic 75.0%
! CGGTGACGGCGCTGCCGAGA+GGG + chr5.2:2598232-2598251 MS.gene21693:CDS 75.0%
! GGTGACGGCGCTGCCGAGAG+GGG + chr5.2:2598233-2598252 MS.gene21693:CDS 75.0%
! CGGCGCTGCCGAGAGGGGAG+AGG + chr5.2:2598238-2598257 MS.gene21693:CDS 80.0%
!! CCGGTGACGGCGCTGCCGAG+AGG + chr5.2:2598231-2598250 MS.gene21693:CDS 80.0%


Chromosome Type Strat End Strand Name
chr5.2 gene 2598024 2600006 2598024 ID=MS.gene21693
chr5.2 mRNA 2598024 2600006 2598024 ID=MS.gene21693.t1;Parent=MS.gene21693
chr5.2 exon 2598024 2598389 2598024 ID=MS.gene21693.t1.exon1;Parent=MS.gene21693.t1
chr5.2 CDS 2598024 2598389 2598024 ID=cds.MS.gene21693.t1;Parent=MS.gene21693.t1
chr5.2 exon 2599458 2599718 2599458 ID=MS.gene21693.t1.exon2;Parent=MS.gene21693.t1
chr5.2 CDS 2599458 2599718 2599458 ID=cds.MS.gene21693.t1;Parent=MS.gene21693.t1
chr5.2 exon 2599818 2600006 2599818 ID=MS.gene21693.t1.exon3;Parent=MS.gene21693.t1
chr5.2 CDS 2599818 2600006 2599818 ID=cds.MS.gene21693.t1;Parent=MS.gene21693.t1
Gene Sequence

>MS.gene21693

ATGGCCGCTACCAACCCTCTATCCCTCTCCTGCTCTTCTCAAACACACACTTCTCCTCATTTCCTTCTCCCACGTAAACCTTTTCTTCTCCTCTCCCGCCACTCTAACCGCTACGCACGCCCAAAGTCTATGCGATTGGTCACAACGTGTAAGGCAAGTCAAGTGTCCGTGGCTGAAGAGTCGTCCAAAAACTGGGTTCCGGTTGTGCCGGTGACGGCGCTGCCGAGAGGGGAGAGGCGTGTCATAATTCAAGAAGGGGAGACTATATTGCTTTTGTGGTATAAAGATCAAATATTTGCCATTGAAAATAGGTCCCCTGCTGAAGGTGCTTATTCTGAGGGCTTGAAAAATGCCAAGCTCACACAGGTTAGTTACTTTCTTAGGATAATGTCTTTAGGATAGCCTATCAAAACAACTTTTATAGGACATAAGTGCTTATACATAAGCACTTATTAAAATAATTGGACTTTATTCATAAACACTTATATGATTGCCCACGTGGGTTGGTCTGGTGGTGCAGACTTGAAATGTGTTCCTCTCAAGTTCTCAGACTCATCCTGGTGCCGGTTTATGTGGGCCGGTGGACGGTTGGATTGGTCCTCCGAATTAGTCTTTCCTTAGGGTTAAGCTTATATTAACATTTGTTATAGAAATATTTGACACGTTATAGGTGCTTAATATGTTCGTACATATCACAATTGGGTTTAAACAGTGATTTGCCTTATTTTGAAATTCAATGACTATGGAGCAAGCACTAGATAGAGAACGATTTCTTTTATTTGAAAGTTCAATGATATACTGAAAATCTGATTTTCATTGGAAAGAAGCGATTGCTATAGGTCTTTTTTTAAGCAAAATCGGTGTGCAAAAGCATCACTATAGTGTCAACAATCAAAACTACTAGGTTGGCACACTTTACACTGACAATCATTTGCAGCACACCAAAAATTTGTAAATGAAAAGAAAGAAGCAAAAATTAGGTAGACTAAACCTATTGTTGAAAAAATCTGACCTAATTAAATCAGGGAAATAGTCCCACCGAAGTAAATCAAAGATGAAGATGCCATATGAAGCGGCTTATCAGTACATAATTTCTGTTTTTTCATTGACAAATGTTAGTTTATTAGTTGTTACGTTAGTATTTTCTCCTTCACCATAGTCTAAACCTCGGTCTTCAAGTCCTCTAACTCCTTCAACCCTTGGCTCAAATCAGCTGAGCTACCCAACCCAAGACCTTTTTCGTGTACGTTGTGTGCAATGCATGATAATGTCAATTGGGAAATAGCAATCATTTTCTATCATTCATGCAGACGAACTTTTGATTAGTAGAATTTTTTTGTATTCAGTGAAATCCACCCTTGCAAAGTTATTAATTAGTCTAGCTTGACTGAAAATGAGTTGATCTTTTCCAATTGTTTTGTTTTCTCTTTGCAGGATGGTTGTATAGTTTGCCCAACAACTGACAGCACATTTGATCTAAGAACAGGAGAGATCAAGGAATGGTATCCAAACAATCCTGTTCTGAGAGTTCTAACACCTGCTTTGAGGAACCTCTTTGTATATCCTGTCAAAACAGACGAACAAAATATTTATATCAGCATCACCGGAGGTTTCAAATCTGATGCTGCTACTGAAATTCTCTTTAGCGGGAAGGCTCAGCCTGGTATAACAGCAAGCGATGTCAATGTGGACGAGGTAACATAACAAGAGTAACATTCTGATCAATTATATATGGACTCATTGCAATGGCATTCTCAATCTGATATTTTTTTTATTTTTTTTATGACTGTTTAGGTCAGAATGGTGGTTGATGAGAGTCAACTGGGATTTGGTTTCAATAGGAAGAACGAAATAATCAACGGTAAAGCAGCTGTTATTGGATTCCTTCTGTTGTTGGATTTCGAACTTTTAACAGGTAAGGGTCTTTTGAAGGGGACAGGTTTCTTGGACTTCATATACTCTGCGTCTAATGCTCTCAATTAG

Protein sequence

>MS.gene21693.t1

MAATNPLSLSCSSQTHTSPHFLLPRKPFLLLSRHSNRYARPKSMRLVTTCKASQVSVAEESSKNWVPVVPVTALPRGERRVIIQEGETILLLWYKDQIFAIENRSPAEGAYSEGLKNAKLTQDGCIVCPTTDSTFDLRTGEIKEWYPNNPVLRVLTPALRNLFVYPVKTDEQNIYISITGGFKSDAATEILFSGKAQPGITASDVNVDEVRMVVDESQLGFGFNRKNEIINGKAAVIGFLLLLDFELLTGKGLLKGTGFLDFIYSASNALN