Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene38024.t1 | XP_003617925.1 | 99 | 517 | 3 | 1 | 1 | 517 | 1 | 515 | 3.10E-291 | 1010.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene38024.t1 | P52416 | 92.7 | 519 | 25 | 3 | 1 | 517 | 1 | 508 | 1.4e-273 | 943.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene38024.t1 | G7KEK9 | 99.0 | 517 | 3 | 1 | 1 | 517 | 1 | 515 | 2.2e-291 | 1010.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049137 | MS.gene38024 | 0.800035 | 1.74E-48 | -1.69E-46 |
| MS.gene049170 | MS.gene38024 | 0.807176 | 5.74E-50 | -1.69E-46 |
| MS.gene049171 | MS.gene38024 | 0.826506 | 2.61E-54 | -1.69E-46 |
| MS.gene049217 | MS.gene38024 | 0.815598 | 8.51E-52 | -1.69E-46 |
| MS.gene049222 | MS.gene38024 | 0.801949 | 7.07E-49 | -1.69E-46 |
| MS.gene049257 | MS.gene38024 | 0.813985 | 1.94E-51 | -1.69E-46 |
| MS.gene049356 | MS.gene38024 | 0.802994 | 4.31E-49 | -1.69E-46 |
| MS.gene049488 | MS.gene38024 | 0.804983 | 1.66E-49 | -1.69E-46 |
| MS.gene049609 | MS.gene38024 | 0.840867 | 6.71E-58 | -1.69E-46 |
| MS.gene049633 | MS.gene38024 | 0.84868 | 5.25E-60 | -1.69E-46 |
| MS.gene049805 | MS.gene38024 | 0.814305 | 1.65E-51 | -1.69E-46 |
| MS.gene050170 | MS.gene38024 | 0.80251 | 5.42E-49 | -1.69E-46 |
| MS.gene050375 | MS.gene38024 | 0.824378 | 8.34E-54 | -1.69E-46 |
| MS.gene050400 | MS.gene38024 | 0.81279 | 3.55E-51 | -1.69E-46 |
| MS.gene050444 | MS.gene38024 | 0.814619 | 1.40E-51 | -1.69E-46 |
| MS.gene050553 | MS.gene38024 | 0.814371 | 1.59E-51 | -1.69E-46 |
| MS.gene050593 | MS.gene38024 | 0.829973 | 3.81E-55 | -1.69E-46 |
| MS.gene050670 | MS.gene38024 | 0.82718 | 1.80E-54 | -1.69E-46 |
| MS.gene050747 | MS.gene38024 | 0.811425 | 7.05E-51 | -1.69E-46 |
| MS.gene050772 | MS.gene38024 | 0.825759 | 3.93E-54 | -1.69E-46 |
| MS.gene050809 | MS.gene38024 | -0.806841 | 6.76E-50 | -1.69E-46 |
| MS.gene05080 | MS.gene38024 | 0.836555 | 8.74E-57 | -1.69E-46 |
| MS.gene05081 | MS.gene38024 | 0.903343 | 3.83E-79 | -1.69E-46 |
| MS.gene050868 | MS.gene38024 | 0.818482 | 1.92E-52 | -1.69E-46 |
| MS.gene050871 | MS.gene38024 | 0.819161 | 1.34E-52 | -1.69E-46 |
| MS.gene050950 | MS.gene38024 | 0.806476 | 8.08E-50 | -1.69E-46 |
| MS.gene05105 | MS.gene38024 | 0.827585 | 1.44E-54 | -1.69E-46 |
| MS.gene051255 | MS.gene38024 | 0.803259 | 3.80E-49 | -1.69E-46 |
| MS.gene051360 | MS.gene38024 | 0.827072 | 1.91E-54 | -1.69E-46 |
| MS.gene051387 | MS.gene38024 | 0.819494 | 1.13E-52 | -1.69E-46 |
| MS.gene051455 | MS.gene38024 | 0.832867 | 7.40E-56 | -1.69E-46 |
| MS.gene051525 | MS.gene38024 | 0.857592 | 1.47E-62 | -1.69E-46 |
| MS.gene051552 | MS.gene38024 | -0.821181 | 4.63E-53 | -1.69E-46 |
| MS.gene051666 | MS.gene38024 | 0.804065 | 2.58E-49 | -1.69E-46 |
| MS.gene051734 | MS.gene38024 | 0.835942 | 1.25E-56 | -1.69E-46 |
| MS.gene051838 | MS.gene38024 | 0.895436 | 9.60E-76 | -1.69E-46 |
| MS.gene051858 | MS.gene38024 | 0.837107 | 6.32E-57 | -1.69E-46 |
| MS.gene051874 | MS.gene38024 | 0.804836 | 1.78E-49 | -1.69E-46 |
| MS.gene051941 | MS.gene38024 | 0.843799 | 1.12E-58 | -1.69E-46 |
| MS.gene052011 | MS.gene38024 | -0.803761 | 2.99E-49 | -1.69E-46 |
| MS.gene052134 | MS.gene38024 | 0.80635 | 8.58E-50 | -1.69E-46 |
| MS.gene052136 | MS.gene38024 | 0.809428 | 1.90E-50 | -1.69E-46 |
| MS.gene052188 | MS.gene38024 | 0.803244 | 3.82E-49 | -1.69E-46 |
| MS.gene052346 | MS.gene38024 | 0.842072 | 3.23E-58 | -1.69E-46 |
| MS.gene05240 | MS.gene38024 | -0.803441 | 3.48E-49 | -1.69E-46 |
| MS.gene052414 | MS.gene38024 | 0.839567 | 1.47E-57 | -1.69E-46 |
| MS.gene052469 | MS.gene38024 | 0.842695 | 2.21E-58 | -1.69E-46 |
| MS.gene052481 | MS.gene38024 | 0.825879 | 3.68E-54 | -1.69E-46 |
| MS.gene052484 | MS.gene38024 | 0.829205 | 5.86E-55 | -1.69E-46 |
| MS.gene052485 | MS.gene38024 | 0.809569 | 1.77E-50 | -1.69E-46 |
| MS.gene052501 | MS.gene38024 | 0.819651 | 1.04E-52 | -1.69E-46 |
| MS.gene052503 | MS.gene38024 | 0.819033 | 1.44E-52 | -1.69E-46 |
| MS.gene052505 | MS.gene38024 | 0.810256 | 1.26E-50 | -1.69E-46 |
| MS.gene052615 | MS.gene38024 | 0.852221 | 5.32E-61 | -1.69E-46 |
| MS.gene052823 | MS.gene38024 | 0.806363 | 8.53E-50 | -1.69E-46 |
| MS.gene052825 | MS.gene38024 | 0.810052 | 1.40E-50 | -1.69E-46 |
| MS.gene052870 | MS.gene38024 | 0.881379 | 2.52E-70 | -1.69E-46 |
| MS.gene052872 | MS.gene38024 | 0.882801 | 7.68E-71 | -1.69E-46 |
| MS.gene052966 | MS.gene38024 | 0.842172 | 3.04E-58 | -1.69E-46 |
| MS.gene052982 | MS.gene38024 | 0.808743 | 2.67E-50 | -1.69E-46 |
| MS.gene052999 | MS.gene38024 | 0.839146 | 1.89E-57 | -1.69E-46 |
| MS.gene053169 | MS.gene38024 | 0.810175 | 1.31E-50 | -1.69E-46 |
| MS.gene053203 | MS.gene38024 | 0.806695 | 7.26E-50 | -1.69E-46 |
| MS.gene053207 | MS.gene38024 | 0.838023 | 3.68E-57 | -1.69E-46 |
| MS.gene053449 | MS.gene38024 | 0.833047 | 6.67E-56 | -1.69E-46 |
| MS.gene053479 | MS.gene38024 | 0.830376 | 3.04E-55 | -1.69E-46 |
| MS.gene053480 | MS.gene38024 | 0.833685 | 4.63E-56 | -1.69E-46 |
| MS.gene053632 | MS.gene38024 | 0.81241 | 4.30E-51 | -1.69E-46 |
| MS.gene053758 | MS.gene38024 | 0.81894 | 1.51E-52 | -1.69E-46 |
| MS.gene053824 | MS.gene38024 | 0.871981 | 4.51E-67 | -1.69E-46 |
| MS.gene053912 | MS.gene38024 | 0.816993 | 4.15E-52 | -1.69E-46 |
| MS.gene054107 | MS.gene38024 | 0.814807 | 1.28E-51 | -1.69E-46 |
| MS.gene054344 | MS.gene38024 | 0.841322 | 5.10E-58 | -1.69E-46 |
| MS.gene054600 | MS.gene38024 | 0.823498 | 1.34E-53 | -1.69E-46 |
| MS.gene054884 | MS.gene38024 | -0.84018 | 1.02E-57 | -1.69E-46 |
| MS.gene054927 | MS.gene38024 | 0.816179 | 6.32E-52 | -1.69E-46 |
| MS.gene05494 | MS.gene38024 | 0.865192 | 7.06E-65 | -1.69E-46 |
| MS.gene055206 | MS.gene38024 | 0.879591 | 1.10E-69 | -1.69E-46 |
| MS.gene055224 | MS.gene38024 | 0.819243 | 1.29E-52 | -1.69E-46 |
| MS.gene055289 | MS.gene38024 | 0.800307 | 1.53E-48 | -1.69E-46 |
| MS.gene055502 | MS.gene38024 | 0.814502 | 1.49E-51 | -1.69E-46 |
| MS.gene055539 | MS.gene38024 | 0.851208 | 1.03E-60 | -1.69E-46 |
| MS.gene055577 | MS.gene38024 | 0.837611 | 4.69E-57 | -1.69E-46 |
| MS.gene055722 | MS.gene38024 | 0.827192 | 1.79E-54 | -1.69E-46 |
| MS.gene055741 | MS.gene38024 | 0.86047 | 2.02E-63 | -1.69E-46 |
| MS.gene055744 | MS.gene38024 | 0.859325 | 4.47E-63 | -1.69E-46 |
| MS.gene05589 | MS.gene38024 | 0.82564 | 4.20E-54 | -1.69E-46 |
| MS.gene055909 | MS.gene38024 | 0.815715 | 8.02E-52 | -1.69E-46 |
| MS.gene055911 | MS.gene38024 | 0.816053 | 6.74E-52 | -1.69E-46 |
| MS.gene055941 | MS.gene38024 | 0.847721 | 9.67E-60 | -1.69E-46 |
| MS.gene056166 | MS.gene38024 | 0.835511 | 1.61E-56 | -1.69E-46 |
| MS.gene056387 | MS.gene38024 | 0.813081 | 3.07E-51 | -1.69E-46 |
| MS.gene056511 | MS.gene38024 | 0.824965 | 6.06E-54 | -1.69E-46 |
| MS.gene056796 | MS.gene38024 | 0.813267 | 2.79E-51 | -1.69E-46 |
| MS.gene056877 | MS.gene38024 | 0.854676 | 1.05E-61 | -1.69E-46 |
| MS.gene056946 | MS.gene38024 | 0.835165 | 1.97E-56 | -1.69E-46 |
| MS.gene057019 | MS.gene38024 | 0.822815 | 1.94E-53 | -1.69E-46 |
| MS.gene057048 | MS.gene38024 | 0.804835 | 1.78E-49 | -1.69E-46 |
| MS.gene057076 | MS.gene38024 | 0.865655 | 5.04E-65 | -1.69E-46 |
| MS.gene057124 | MS.gene38024 | 0.823133 | 1.63E-53 | -1.69E-46 |
| MS.gene057196 | MS.gene38024 | 0.839136 | 1.90E-57 | -1.69E-46 |
| MS.gene057289 | MS.gene38024 | 0.844502 | 7.26E-59 | -1.69E-46 |
| MS.gene057332 | MS.gene38024 | 0.838419 | 2.91E-57 | -1.69E-46 |
| MS.gene057658 | MS.gene38024 | 0.819646 | 1.04E-52 | -1.69E-46 |
| MS.gene057734 | MS.gene38024 | 0.807774 | 4.29E-50 | -1.69E-46 |
| MS.gene057749 | MS.gene38024 | 0.836178 | 1.09E-56 | -1.69E-46 |
| MS.gene057823 | MS.gene38024 | 0.841089 | 5.87E-58 | -1.69E-46 |
| MS.gene057856 | MS.gene38024 | 0.851038 | 1.15E-60 | -1.69E-46 |
| MS.gene057857 | MS.gene38024 | 0.826128 | 3.22E-54 | -1.69E-46 |
| MS.gene058007 | MS.gene38024 | 0.816463 | 5.46E-52 | -1.69E-46 |
| MS.gene058120 | MS.gene38024 | 0.81854 | 1.86E-52 | -1.69E-46 |
| MS.gene058130 | MS.gene38024 | 0.804829 | 1.79E-49 | -1.69E-46 |
| MS.gene058338 | MS.gene38024 | 0.84713 | 1.40E-59 | -1.69E-46 |
| MS.gene058376 | MS.gene38024 | 0.830904 | 2.26E-55 | -1.69E-46 |
| MS.gene05837 | MS.gene38024 | 0.844813 | 5.99E-59 | -1.69E-46 |
| MS.gene058418 | MS.gene38024 | -0.820772 | 5.75E-53 | -1.69E-46 |
| MS.gene058419 | MS.gene38024 | 0.804168 | 2.46E-49 | -1.69E-46 |
| MS.gene058444 | MS.gene38024 | 0.892577 | 1.40E-74 | -1.69E-46 |
| MS.gene058700 | MS.gene38024 | 0.83001 | 3.74E-55 | -1.69E-46 |
| MS.gene058838 | MS.gene38024 | 0.849839 | 2.50E-60 | -1.69E-46 |
| MS.gene058948 | MS.gene38024 | 0.810302 | 1.23E-50 | -1.69E-46 |
| MS.gene059023 | MS.gene38024 | 0.866653 | 2.44E-65 | -1.69E-46 |
| MS.gene059129 | MS.gene38024 | 0.814628 | 1.40E-51 | -1.69E-46 |
| MS.gene05914 | MS.gene38024 | 0.809448 | 1.88E-50 | -1.69E-46 |
| MS.gene059303 | MS.gene38024 | 0.809021 | 2.32E-50 | -1.69E-46 |
| MS.gene05934 | MS.gene38024 | 0.813319 | 2.72E-51 | -1.69E-46 |
| MS.gene059455 | MS.gene38024 | 0.820179 | 7.87E-53 | -1.69E-46 |
| MS.gene059512 | MS.gene38024 | 0.823917 | 1.07E-53 | -1.69E-46 |
| MS.gene059674 | MS.gene38024 | 0.821545 | 3.81E-53 | -1.69E-46 |
| MS.gene059676 | MS.gene38024 | 0.800769 | 1.23E-48 | -1.69E-46 |
| MS.gene059718 | MS.gene38024 | 0.816086 | 6.63E-52 | -1.69E-46 |
| MS.gene059902 | MS.gene38024 | 0.829598 | 4.71E-55 | -1.69E-46 |
| MS.gene06000 | MS.gene38024 | 0.801342 | 9.42E-49 | -1.69E-46 |
| MS.gene060469 | MS.gene38024 | 0.843274 | 1.55E-58 | -1.69E-46 |
| MS.gene060485 | MS.gene38024 | 0.812173 | 4.84E-51 | -1.69E-46 |
| MS.gene060717 | MS.gene38024 | 0.824926 | 6.19E-54 | -1.69E-46 |
| MS.gene060762 | MS.gene38024 | 0.813362 | 2.66E-51 | -1.69E-46 |
| MS.gene060818 | MS.gene38024 | 0.810314 | 1.23E-50 | -1.69E-46 |
| MS.gene060832 | MS.gene38024 | 0.806004 | 1.02E-49 | -1.69E-46 |
| MS.gene060835 | MS.gene38024 | 0.839134 | 1.90E-57 | -1.69E-46 |
| MS.gene060837 | MS.gene38024 | 0.860957 | 1.44E-63 | -1.69E-46 |
| MS.gene06092 | MS.gene38024 | 0.820827 | 5.58E-53 | -1.69E-46 |
| MS.gene061154 | MS.gene38024 | 0.827051 | 1.94E-54 | -1.69E-46 |
| MS.gene061231 | MS.gene38024 | 0.854531 | 1.16E-61 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene38024.t1 | MTR_5g097010 | 99.033 | 517 | 3 | 1 | 1 | 517 | 1 | 515 | 0.0 | 1053 |
| MS.gene38024.t1 | MTR_3g082150 | 89.749 | 517 | 50 | 2 | 1 | 517 | 1 | 514 | 0.0 | 919 |
| MS.gene38024.t1 | MTR_4g131760 | 53.333 | 495 | 221 | 5 | 31 | 517 | 29 | 521 | 0.0 | 539 |
| MS.gene38024.t1 | MTR_7g111020 | 57.500 | 440 | 176 | 8 | 85 | 517 | 93 | 528 | 0.0 | 526 |
| MS.gene38024.t1 | MTR_3g112070 | 55.085 | 472 | 193 | 9 | 60 | 517 | 64 | 530 | 0.0 | 523 |
| MS.gene38024.t1 | MTR_3g116860 | 53.066 | 473 | 201 | 8 | 60 | 517 | 52 | 518 | 4.13e-168 | 486 |
| MS.gene38024.t1 | MTR_4g070430 | 52.283 | 438 | 201 | 5 | 85 | 517 | 94 | 528 | 1.11e-166 | 482 |
| MS.gene38024.t1 | MTR_7g111020 | 55.750 | 400 | 166 | 8 | 125 | 517 | 1 | 396 | 9.95e-160 | 459 |
| MS.gene38024.t1 | MTR_4g070430 | 52.208 | 385 | 176 | 5 | 85 | 464 | 94 | 475 | 3.32e-145 | 426 |
| MS.gene38024.t1 | MTR_7g104380 | 57.895 | 95 | 23 | 3 | 367 | 457 | 4 | 85 | 1.27e-24 | 102 |
| MS.gene38024.t1 | MTR_6g014000 | 78.182 | 55 | 12 | 0 | 421 | 475 | 266 | 320 | 1.98e-20 | 94.7 |
| MS.gene38024.t1 | MTR_3g056715 | 65.116 | 43 | 15 | 0 | 375 | 417 | 28 | 70 | 4.77e-11 | 59.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene38024.t1 | AT5G48300 | 85.962 | 520 | 70 | 2 | 1 | 517 | 1 | 520 | 0.0 | 897 |
| MS.gene38024.t1 | AT5G19220 | 52.124 | 518 | 232 | 8 | 10 | 517 | 11 | 522 | 0.0 | 538 |
| MS.gene38024.t1 | AT1G27680 | 57.175 | 439 | 179 | 5 | 85 | 517 | 83 | 518 | 0.0 | 531 |
| MS.gene38024.t1 | AT4G39210 | 47.692 | 520 | 239 | 9 | 17 | 517 | 16 | 521 | 4.68e-168 | 486 |
| MS.gene38024.t1 | AT4G39210 | 47.692 | 520 | 239 | 9 | 17 | 517 | 16 | 521 | 4.68e-168 | 486 |
| MS.gene38024.t1 | AT2G21590 | 50.529 | 473 | 213 | 7 | 60 | 517 | 57 | 523 | 4.06e-166 | 481 |
| MS.gene38024.t1 | AT2G21590 | 50.529 | 473 | 213 | 7 | 60 | 517 | 57 | 523 | 4.06e-166 | 481 |
| MS.gene38024.t1 | AT2G21590 | 50.529 | 473 | 213 | 7 | 60 | 517 | 57 | 523 | 4.06e-166 | 481 |
| MS.gene38024.t1 | AT2G21590 | 50.529 | 473 | 213 | 7 | 60 | 517 | 57 | 523 | 4.06e-166 | 481 |
| MS.gene38024.t1 | AT2G21590 | 50.529 | 473 | 213 | 7 | 60 | 517 | 57 | 523 | 4.06e-166 | 481 |
| MS.gene38024.t1 | AT2G21590 | 50.529 | 473 | 213 | 7 | 60 | 517 | 57 | 523 | 4.06e-166 | 481 |
| MS.gene38024.t1 | AT2G21590 | 50.529 | 473 | 213 | 7 | 60 | 517 | 57 | 523 | 4.06e-166 | 481 |
| MS.gene38024.t1 | AT1G05610 | 46.087 | 460 | 229 | 6 | 60 | 517 | 34 | 476 | 1.21e-141 | 417 |
| MS.gene38024.t1 | AT1G05610 | 46.320 | 462 | 231 | 6 | 60 | 517 | 34 | 482 | 1.52e-141 | 416 |
Find 97 sgRNAs with CRISPR-Local
Find 212 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GACAAGATTGTTACAGTTTC+TGG | 0.099528 | 5.1:+77381393 | MS.gene38024:CDS |
| TTAGGTCGATACTACCATTT+TGG | 0.182482 | 5.1:+77382907 | MS.gene38024:intron |
| ATGCTGTGAGGCAATATTTA+TGG | 0.223531 | 5.1:+77382583 | MS.gene38024:CDS |
| ATTTAGTACAATGGCTTCTA+TGG | 0.248755 | 5.1:+77381257 | None:intergenic |
| TCTTATACCTGGAACCAATT+AGG | 0.277877 | 5.1:-77382156 | None:intergenic |
| GATATCACTGATAGTGTTAT+TGG | 0.282523 | 5.1:+77383683 | MS.gene38024:CDS |
| GCTTGCAACTGGTCTCCTTT+TGG | 0.300205 | 5.1:-77382813 | None:intergenic |
| TGGGGAAGGATGTGTGATTA+AGG | 0.308216 | 5.1:+77383703 | MS.gene38024:CDS |
| CTATTTAAGCAGTTGCTAAC+AGG | 0.334981 | 5.1:-77381988 | None:intergenic |
| TTCATCATCAAGACCCAAAA+TGG | 0.338471 | 5.1:-77382921 | None:intergenic |
| AGTCATTTGCACCAGGAAAT+TGG | 0.341546 | 5.1:-77383024 | None:intergenic |
| ATACCCATGCTAGCAATAAA+AGG | 0.346195 | 5.1:-77382959 | None:intergenic |
| ATATCACTGATAGTGTTATT+GGG | 0.347690 | 5.1:+77383684 | MS.gene38024:CDS |
| TTCCTGGTGCAAATGACTTT+GGG | 0.360622 | 5.1:+77383029 | MS.gene38024:CDS |
| TTGCTTCGCGACCAATTTCC+TGG | 0.362208 | 5.1:+77383013 | MS.gene38024:CDS |
| GAAAAGCGTGCAACTGCTTT+CGG | 0.366218 | 5.1:+77382741 | MS.gene38024:CDS |
| TATCGCGGTTGAGTGTAAAT+TGG | 0.366670 | 5.1:-77383632 | None:intergenic |
| TTTCCTGGTGCAAATGACTT+TGG | 0.393661 | 5.1:+77383028 | MS.gene38024:CDS |
| TGAGAATCCTAATTGGTTCC+AGG | 0.394813 | 5.1:+77382149 | MS.gene38024:CDS |
| CTTACTTATATGATGGCTAC+TGG | 0.396033 | 5.1:+77383417 | MS.gene38024:CDS |
| TATTGAAGACACTTTGTTGA+TGG | 0.396056 | 5.1:+77383903 | MS.gene38024:CDS |
| GTTGACAAGAATGCTAGAAT+TGG | 0.404186 | 5.1:+77384202 | MS.gene38024:CDS |
| AAAGTCCTGAGAATCCTAAT+TGG | 0.411364 | 5.1:+77382142 | MS.gene38024:CDS |
| GCAAAACCAGCTGTTCCTCT+TGG | 0.419432 | 5.1:+77381940 | MS.gene38024:CDS |
| GGCAGTGTTCCAATTGGTAT+TGG | 0.426491 | 5.1:+77384151 | MS.gene38024:CDS |
| TTCTCATCATCTCAACTCTC+TGG | 0.426995 | 5.1:+77381369 | MS.gene38024:CDS |
| TCCATTCTGTGGTCGGGCTG+CGG | 0.435088 | 5.1:+77383857 | MS.gene38024:CDS |
| AGTGTACTTGGCATTATACT+TGG | 0.438582 | 5.1:+77381874 | MS.gene38024:CDS |
| TGGAACCAATTAGGATTCTC+AGG | 0.441668 | 5.1:-77382147 | None:intergenic |
| ATTCCTGGTGCTACTTCCAT+TGG | 0.442617 | 5.1:+77383061 | MS.gene38024:CDS |
| AAAAGCCTGTACCTGACTTC+AGG | 0.442791 | 5.1:+77383492 | MS.gene38024:CDS |
| GAGTAACAATCACATGCTTC+CGG | 0.448356 | 5.1:-77381440 | None:intergenic |
| TTTGGGAGTGAAGTGATTCC+TGG | 0.451969 | 5.1:+77383046 | MS.gene38024:CDS |
| CATCTGTTTCCCTATGTGCT+TGG | 0.452131 | 5.1:-77382686 | None:intergenic |
| TTGTTCATTCAGAGTGTACT+TGG | 0.454600 | 5.1:+77381862 | MS.gene38024:intron |
| CTCTGCTAGCGTCAGGATCA+AGG | 0.461795 | 5.1:-77381500 | None:intergenic |
| CGTGCTTATGCAAGCAACCT+TGG | 0.464799 | 5.1:+77382075 | MS.gene38024:CDS |
| GTTACAGTTTCTGGTGGTGC+AGG | 0.467435 | 5.1:+77381402 | MS.gene38024:CDS |
| CTATTTATTTACCTGAAGTC+AGG | 0.470764 | 5.1:-77383503 | None:intergenic |
| GATGGGCGCGGATTATTATG+AGG | 0.472706 | 5.1:+77383921 | MS.gene38024:CDS |
| CGTAATCCATTCGATACAAA+TGG | 0.477237 | 5.1:-77382653 | None:intergenic |
| TCACCTTCATAGCTTGCAAC+TGG | 0.488306 | 5.1:-77382824 | None:intergenic |
| GTTTCTGGTGGTGCAGGAAG+AGG | 0.489728 | 5.1:+77381408 | MS.gene38024:CDS |
| TGCATTATAGAAAGCCTCAA+TGG | 0.493820 | 5.1:-77383453 | None:intergenic |
| GAGTTTCTGCCAATACCAAT+TGG | 0.493872 | 5.1:-77384160 | None:intergenic |
| AGACCAGTTGCAAGCTATGA+AGG | 0.497750 | 5.1:+77382821 | MS.gene38024:CDS |
| ATTATACTTGGAGGTGGTGC+TGG | 0.502763 | 5.1:+77381886 | MS.gene38024:CDS |
| CGGTATCGTCACAATAATCA+AGG | 0.503615 | 5.1:+77384931 | MS.gene38024:CDS |
| GTTAAAGGCAGTGTTCCAAT+TGG | 0.505400 | 5.1:+77384145 | MS.gene38024:CDS |
| ATTTACCTGAAGTCAGGTAC+AGG | 0.505990 | 5.1:-77383497 | None:intergenic |
| CTCCCAAAGTCATTTGCACC+AGG | 0.511433 | 5.1:-77383031 | None:intergenic |
| ATGGCTTCTATGGCTACTAC+TGG | 0.512911 | 5.1:+77381267 | MS.gene38024:CDS |
| TTTGCTCTCTTCTTGGTGAG+TGG | 0.513424 | 5.1:-77381922 | None:intergenic |
| AAACTCACTCTGCTAGCGTC+AGG | 0.517611 | 5.1:-77381507 | None:intergenic |
| ATTGAAGACACTTTGTTGAT+GGG | 0.519372 | 5.1:+77383904 | MS.gene38024:CDS |
| AGAAATTTATCCAAGCACAT+AGG | 0.522176 | 5.1:+77382676 | MS.gene38024:CDS |
| TTAGCTCCAAGAGGAACAGC+TGG | 0.523224 | 5.1:-77381946 | None:intergenic |
| CGGTGACCATTTGTATCGAA+TGG | 0.523691 | 5.1:+77382647 | MS.gene38024:CDS |
| GTGCAAGCTTACTTATATGA+TGG | 0.525785 | 5.1:+77383410 | MS.gene38024:CDS |
| ACCGCAGCCCGACCACAGAA+TGG | 0.529090 | 5.1:-77383858 | None:intergenic |
| TGTGAATCAGAAACAGCCTT+AGG | 0.530492 | 5.1:-77381462 | None:intergenic |
| GTACTTGGCATTATACTTGG+AGG | 0.530626 | 5.1:+77381877 | MS.gene38024:CDS |
| GCATGTGATTGTTACTCCTA+AGG | 0.531636 | 5.1:+77381446 | MS.gene38024:CDS |
| GAAATTTATCCAAGCACATA+GGG | 0.548140 | 5.1:+77382677 | MS.gene38024:CDS |
| CAGGAAGAGGAAGATGCATC+CGG | 0.550332 | 5.1:+77381421 | MS.gene38024:CDS |
| CACTGTGGCTGCATTGCCAA+TGG | 0.554069 | 5.1:+77382716 | MS.gene38024:CDS |
| AGACACTTTGTTGATGGGCG+CGG | 0.554204 | 5.1:+77383909 | MS.gene38024:CDS |
| GCTTTCTATAATGCAAATCT+CGG | 0.554882 | 5.1:+77383461 | MS.gene38024:CDS |
| GAAGGTTATTTCATTAAAAG+CGG | 0.560913 | 5.1:+77384911 | MS.gene38024:CDS |
| TTGGAGTACTTAATTCTGGC+CGG | 0.562380 | 5.1:+77382627 | MS.gene38024:CDS |
| TTACTTATATGATGGCTACT+GGG | 0.563247 | 5.1:+77383418 | MS.gene38024:CDS |
| ACTGATAGTGTTATTGGGGA+AGG | 0.567862 | 5.1:+77383689 | MS.gene38024:CDS |
| GCTTATGCAAGCAACCTTGG+TGG | 0.575280 | 5.1:+77382078 | MS.gene38024:CDS |
| CTTGGCATTATACTTGGAGG+TGG | 0.578848 | 5.1:+77381880 | MS.gene38024:CDS |
| CTGCGGTCTTGCATATCAGA+AGG | 0.580045 | 5.1:+77383874 | MS.gene38024:CDS |
| TTTCCAATGGAAGTAGCACC+AGG | 0.583076 | 5.1:-77383064 | None:intergenic |
| AACACATACTCTCTTTCCAA+TGG | 0.587424 | 5.1:-77383077 | None:intergenic |
| CTGATGAAGATCGATGAAGA+GGG | 0.603378 | 5.1:+77382765 | MS.gene38024:CDS |
| TCTGATGAAGATCGATGAAG+AGG | 0.605701 | 5.1:+77382764 | MS.gene38024:CDS |
| GGAAGACATTGGTACCATTG+AGG | 0.607376 | 5.1:+77383439 | MS.gene38024:CDS |
| TCAGCATCAAGCATCTTCGA+TGG | 0.609318 | 5.1:-77383662 | None:intergenic |
| TATCACTGATAGTGTTATTG+GGG | 0.610791 | 5.1:+77383685 | MS.gene38024:CDS |
| CATAAGCACGAGAAAGATGT+CGG | 0.618768 | 5.1:-77382062 | None:intergenic |
| GATGGCTACTGGGAAGACAT+TGG | 0.627351 | 5.1:+77383428 | MS.gene38024:CDS |
| GCATCAAGCATCTTCGATGG+AGG | 0.628793 | 5.1:-77383659 | None:intergenic |
| AAGGATGCGTTAATTCCTAG+TGG | 0.633562 | 5.1:+77384950 | MS.gene38024:CDS |
| AAGATTGTTACAGTTTCTGG+TGG | 0.637778 | 5.1:+77381396 | MS.gene38024:CDS |
| CATTCGATACAAATGGTCAC+CGG | 0.640845 | 5.1:-77382646 | None:intergenic |
| TTCTAAATGACAGTTCCACT+AGG | 0.642519 | 5.1:-77384965 | None:intergenic |
| TCTTGATGATGAAAGAGCAA+AGG | 0.642796 | 5.1:+77382931 | MS.gene38024:CDS |
| TAGAATTGGAGAAAATGTGA+AGG | 0.647495 | 5.1:+77384216 | MS.gene38024:CDS |
| AGTCTATAGTTAGCTCCAAG+AGG | 0.652838 | 5.1:-77381955 | None:intergenic |
| GAAGCTGCAAGAGAAACTGA+AGG | 0.655332 | 5.1:+77384893 | MS.gene38024:CDS |
| TGATGAAGATCGATGAAGAG+GGG | 0.678706 | 5.1:+77382766 | MS.gene38024:CDS |
| TTCGATGGAGGCAAATATCG+CGG | 0.684638 | 5.1:-77383647 | None:intergenic |
| AGGGTACTGCAGATGCTGTG+AGG | 0.771116 | 5.1:+77382571 | MS.gene38024:intron |
| AACAGATGCTGATATCACTG+TGG | 0.779203 | 5.1:+77382701 | MS.gene38024:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAAATTGTGAATAATAA+AGG | - | chr5.1:77384428-77384447 | None:intergenic | 10.0% |
| !!! | TCATTTTATGTATTTTTTTT+GGG | + | chr5.1:77384551-77384570 | MS.gene38024:intron | 10.0% |
| !!! | TTCATTTTATGTATTTTTTT+TGG | + | chr5.1:77384550-77384569 | MS.gene38024:intron | 10.0% |
| !! | AATATTTATTCTCTATTCTT+AGG | + | chr5.1:77382889-77382908 | MS.gene38024:intron | 15.0% |
| !!! | ACTTTTAAAAATCTTACATA+TGG | + | chr5.1:77384833-77384852 | MS.gene38024:intron | 15.0% |
| !!! | ATCTATATATTTTCAATGTA+CGG | + | chr5.1:77384509-77384528 | MS.gene38024:intron | 15.0% |
| !!! | TTTAATTTCAAGAAACTTTT+CGG | + | chr5.1:77383111-77383130 | MS.gene38024:intron | 15.0% |
| !! | AAATGTTTGTTTCAATCTAA+AGG | - | chr5.1:77383224-77383243 | None:intergenic | 20.0% |
| !! | AATAATAATTGTAGTAGACA+TGG | + | chr5.1:77384682-77384701 | MS.gene38024:intron | 20.0% |
| !! | AGATGTCAAATATGATTAAA+TGG | + | chr5.1:77383780-77383799 | MS.gene38024:intron | 20.0% |
| !! | ATATTTGAAAAGATTTGATG+TGG | + | chr5.1:77382541-77382560 | MS.gene38024:intron | 20.0% |
| !! | ATGACAATATGATGATTATA+TGG | - | chr5.1:77383537-77383556 | None:intergenic | 20.0% |
| !! | ATTTGTTTAGGTATGAATTA+TGG | - | chr5.1:77382852-77382871 | None:intergenic | 20.0% |
| !!! | ATGGATTAGAAAGTAAAATA+GGG | - | chr5.1:77384277-77384296 | None:intergenic | 20.0% |
| !!! | TTTTTATGTTGCTTTTGAAT+CGG | + | chr5.1:77382212-77382231 | MS.gene38024:intron | 20.0% |
| ! | AAATCAGAAAATCAATGTTG+CGG | - | chr5.1:77384094-77384113 | None:intergenic | 25.0% |
| ! | CTTGAAATTAAACAACTAGA+AGG | - | chr5.1:77383103-77383122 | None:intergenic | 25.0% |
| ! | GATTATTATGAGGTAAAATG+CGG | + | chr5.1:77383931-77383950 | MS.gene38024:intron | 25.0% |
| ! | TAGTTACATGTTTACATGAA+TGG | - | chr5.1:77384806-77384825 | None:intergenic | 25.0% |
| ! | TATTAAGCTTGACAAATTGT+TGG | + | chr5.1:77384303-77384322 | MS.gene38024:intron | 25.0% |
| ! | TCTAAGGATCCAAAAAAAAA+AGG | - | chr5.1:77383825-77383844 | None:intergenic | 25.0% |
| ! | TGACTTCAGGTAAATAAATA+GGG | + | chr5.1:77383505-77383524 | MS.gene38024:intron | 25.0% |
| ! | TGTGAATAATAAAGGAAAGT+TGG | - | chr5.1:77384420-77384439 | None:intergenic | 25.0% |
| ! | TTCAAAAGCAACATAAAAAG+AGG | - | chr5.1:77382211-77382230 | None:intergenic | 25.0% |
| ! | TTTCTCTTGTAGATTGAATT+GGG | + | chr5.1:77381741-77381760 | MS.gene38024:intron | 25.0% |
| !! | AACAATTGCTCTTTTGATAT+GGG | - | chr5.1:77384185-77384204 | None:intergenic | 25.0% |
| !! | ACCAGCTGAAAAATAATTTT+TGG | + | chr5.1:77381718-77381737 | MS.gene38024:intron | 25.0% |
| !! | AGTTTTTGTGAAAAATTCAC+AGG | + | chr5.1:77383388-77383407 | MS.gene38024:intron | 25.0% |
| !! | ATATCACTGATAGTGTTATT+GGG | + | chr5.1:77383684-77383703 | MS.gene38024:CDS | 25.0% |
| !! | GAAGGTTATTTCATTAAAAG+CGG | + | chr5.1:77384911-77384930 | MS.gene38024:CDS | 25.0% |
| !! | GTAACTTGTAAAGGTATAAA+GGG | + | chr5.1:77384576-77384595 | MS.gene38024:intron | 25.0% |
| !! | TGTAACTTGTAAAGGTATAA+AGG | + | chr5.1:77384575-77384594 | MS.gene38024:intron | 25.0% |
| !! | TGTTTCAATCTAAAGGTTTT+TGG | - | chr5.1:77383217-77383236 | None:intergenic | 25.0% |
| !!! | AAAAGTTTTTTGGCTGTTAA+AGG | + | chr5.1:77384130-77384149 | MS.gene38024:CDS | 25.0% |
| !!! | AACTTTTGAAGCATTTGTTT+AGG | - | chr5.1:77382864-77382883 | None:intergenic | 25.0% |
| !!! | ACCAAAAATTATTTTTCAGC+TGG | - | chr5.1:77381722-77381741 | None:intergenic | 25.0% |
| !!! | AGAAGCTGATAAAAGTTTTT+TGG | + | chr5.1:77384120-77384139 | MS.gene38024:CDS | 25.0% |
| !!! | GAGAAACTTCCTTTTTTTTT+TGG | + | chr5.1:77383813-77383832 | MS.gene38024:intron | 25.0% |
| !!! | GATGGATTAGAAAGTAAAAT+AGG | - | chr5.1:77384278-77384297 | None:intergenic | 25.0% |
| AAATGAATTTCACGTCTACT+AGG | - | chr5.1:77384537-77384556 | None:intergenic | 30.0% | |
| ACATTCATAGCTTAATTCTC+AGG | + | chr5.1:77383356-77383375 | MS.gene38024:intron | 30.0% | |
| AGAAATTTATCCAAGCACAT+AGG | + | chr5.1:77382676-77382695 | MS.gene38024:CDS | 30.0% | |
| ATTGAAGACACTTTGTTGAT+GGG | + | chr5.1:77383904-77383923 | MS.gene38024:CDS | 30.0% | |
| ATTTGCTTGTGTAAGTTACA+AGG | + | chr5.1:77384053-77384072 | MS.gene38024:intron | 30.0% | |
| CTAAAACTTCATCACGATAA+AGG | + | chr5.1:77383275-77383294 | MS.gene38024:intron | 30.0% | |
| CTATTTATTTACCTGAAGTC+AGG | - | chr5.1:77383506-77383525 | None:intergenic | 30.0% | |
| CTGACTTCAGGTAAATAAAT+AGG | + | chr5.1:77383504-77383523 | MS.gene38024:intron | 30.0% | |
| GAAATTTATCCAAGCACATA+GGG | + | chr5.1:77382677-77382696 | MS.gene38024:CDS | 30.0% | |
| GCTAATTGAGAACATAGTTA+AGG | - | chr5.1:77382185-77382204 | None:intergenic | 30.0% | |
| GCTTTCTATAATGCAAATCT+CGG | + | chr5.1:77383461-77383480 | MS.gene38024:CDS | 30.0% | |
| GGATTATAAAGTTCAACAGT+TGG | - | chr5.1:77383327-77383346 | None:intergenic | 30.0% | |
| GTTTCTCTTGTAGATTGAAT+TGG | + | chr5.1:77381740-77381759 | MS.gene38024:intron | 30.0% | |
| TAGAATTGGAGAAAATGTGA+AGG | + | chr5.1:77384216-77384235 | MS.gene38024:CDS | 30.0% | |
| TATAATGTGTCTCATGTTTC+TGG | + | chr5.1:77382295-77382314 | MS.gene38024:intron | 30.0% | |
| TATTGAAGACACTTTGTTGA+TGG | + | chr5.1:77383903-77383922 | MS.gene38024:CDS | 30.0% | |
| TCTCCTATATTTGTATTCTC+CGG | - | chr5.1:77382446-77382465 | None:intergenic | 30.0% | |
| TGAGACAACCAAAACTTAAA+AGG | + | chr5.1:77384628-77384647 | MS.gene38024:intron | 30.0% | |
| TTACTTATATGATGGCTACT+GGG | + | chr5.1:77383418-77383437 | MS.gene38024:CDS | 30.0% | |
| TTTGCTTGTGTAAGTTACAA+GGG | + | chr5.1:77384054-77384073 | MS.gene38024:intron | 30.0% | |
| ! | AAAATTTTCCATTCTGTGGT+CGG | + | chr5.1:77383850-77383869 | MS.gene38024:CDS | 30.0% |
| ! | AGCTATGAATGTTTTATAGC+AGG | - | chr5.1:77383348-77383367 | None:intergenic | 30.0% |
| ! | CAACAATTGCTCTTTTGATA+TGG | - | chr5.1:77384186-77384205 | None:intergenic | 30.0% |
| ! | GAATTTTCAGAAAAGCCAAA+AGG | + | chr5.1:77382798-77382817 | MS.gene38024:CDS | 30.0% |
| ! | GAGTTTATCTCTTTTGCTTT+TGG | + | chr5.1:77381524-77381543 | MS.gene38024:intron | 30.0% |
| ! | GATATCACTGATAGTGTTAT+TGG | + | chr5.1:77383683-77383702 | MS.gene38024:CDS | 30.0% |
| ! | GGAATGAAAGTGTATATAGT+TGG | - | chr5.1:77384256-77384275 | None:intergenic | 30.0% |
| ! | TATCACTGATAGTGTTATTG+GGG | + | chr5.1:77383685-77383704 | MS.gene38024:CDS | 30.0% |
| ! | TGGAAAATTTTGCAGTTCTA+AGG | - | chr5.1:77383841-77383860 | None:intergenic | 30.0% |
| ! | TTCATTTCTAGAGATGATAC+AGG | - | chr5.1:77382518-77382537 | None:intergenic | 30.0% |
| !! | CAAACATTTGTTTTTCCCAT+CGG | + | chr5.1:77383235-77383254 | MS.gene38024:intron | 30.0% |
| !! | TTTTGAAGAGCACAATGTTT+TGG | + | chr5.1:77382608-77382627 | MS.gene38024:CDS | 30.0% |
| !!! | GGTTGTTTTTCTTCCTTTTT+TGG | + | chr5.1:77381545-77381564 | MS.gene38024:intron | 30.0% |
| !!! | TCTTTGGTCCTTTTAAGTTT+TGG | - | chr5.1:77384639-77384658 | None:intergenic | 30.0% |
| !!! | TGTTTTGGAGTACTTAATTC+TGG | + | chr5.1:77382623-77382642 | MS.gene38024:CDS | 30.0% |
| !!! | TTTTGGGTTGTAACTTGTAA+AGG | + | chr5.1:77384567-77384586 | MS.gene38024:intron | 30.0% |
| AAAGTCCTGAGAATCCTAAT+TGG | + | chr5.1:77382142-77382161 | MS.gene38024:CDS | 35.0% | |
| AACACATACTCTCTTTCCAA+TGG | - | chr5.1:77383080-77383099 | None:intergenic | 35.0% | |
| ACATAAAGGGACCAAAGATT+AGG | - | chr5.1:77384357-77384376 | None:intergenic | 35.0% | |
| AGAAAATCAATGTTGCGGTT+AGG | - | chr5.1:77384089-77384108 | None:intergenic | 35.0% | |
| AGCTTAATTCTCAGGATTTG+AGG | + | chr5.1:77383364-77383383 | MS.gene38024:intron | 35.0% | |
| AGTGTACTTGGCATTATACT+TGG | + | chr5.1:77381874-77381893 | MS.gene38024:CDS | 35.0% | |
| AGTTAAGGCAATCTTATACC+TGG | - | chr5.1:77382170-77382189 | None:intergenic | 35.0% | |
| ATACCCATGCTAGCAATAAA+AGG | - | chr5.1:77382962-77382981 | None:intergenic | 35.0% | |
| ATGCTGTGAGGCAATATTTA+TGG | + | chr5.1:77382583-77382602 | MS.gene38024:CDS | 35.0% | |
| CAACAAAACATCGCAAAAAG+AGG | - | chr5.1:77384758-77384777 | None:intergenic | 35.0% | |
| CAACCGGAGAATACAAATAT+AGG | + | chr5.1:77382440-77382459 | MS.gene38024:intron | 35.0% | |
| CGTAATCCATTCGATACAAA+TGG | - | chr5.1:77382656-77382675 | None:intergenic | 35.0% | |
| CTATTTAAGCAGTTGCTAAC+AGG | - | chr5.1:77381991-77382010 | None:intergenic | 35.0% | |
| CTTACTTATATGATGGCTAC+TGG | + | chr5.1:77383417-77383436 | MS.gene38024:CDS | 35.0% | |
| GACAAGATTGTTACAGTTTC+TGG | + | chr5.1:77381393-77381412 | MS.gene38024:CDS | 35.0% | |
| GGTAAACGTGTATCGTTAAA+TGG | + | chr5.1:77382337-77382356 | MS.gene38024:intron | 35.0% | |
| GTCAAGCTTAATATGAGAGA+TGG | - | chr5.1:77384296-77384315 | None:intergenic | 35.0% | |
| GTGCAAGCTTACTTATATGA+TGG | + | chr5.1:77383410-77383429 | MS.gene38024:CDS | 35.0% | |
| GTTGACAAGAATGCTAGAAT+TGG | + | chr5.1:77384202-77384221 | MS.gene38024:CDS | 35.0% | |
| TATTTGTATTCTCCGGTTGT+AGG | - | chr5.1:77382439-77382458 | None:intergenic | 35.0% | |
| TCTTATACCTGGAACCAATT+AGG | - | chr5.1:77382159-77382178 | None:intergenic | 35.0% | |
| TGCATTATAGAAAGCCTCAA+TGG | - | chr5.1:77383456-77383475 | None:intergenic | 35.0% | |
| TTCATCATCAAGACCCAAAA+TGG | - | chr5.1:77382924-77382943 | None:intergenic | 35.0% | |
| TTGTTCATTCAGAGTGTACT+TGG | + | chr5.1:77381862-77381881 | MS.gene38024:intron | 35.0% | |
| ! | AAATTTTCCATTCTGTGGTC+GGG | + | chr5.1:77383851-77383870 | MS.gene38024:CDS | 35.0% |
| ! | AACTTTTATCAGCTTCTGTC+TGG | - | chr5.1:77384117-77384136 | None:intergenic | 35.0% |
| ! | AAGATTGTTACAGTTTCTGG+TGG | + | chr5.1:77381396-77381415 | MS.gene38024:CDS | 35.0% |
| ! | AATGCCTTTTATTGCTAGCA+TGG | + | chr5.1:77382955-77382974 | MS.gene38024:CDS | 35.0% |
| ! | ATGCCTTTTATTGCTAGCAT+GGG | + | chr5.1:77382956-77382975 | MS.gene38024:CDS | 35.0% |
| ! | CTCTTTTTGCGATGTTTTGT+TGG | + | chr5.1:77384756-77384775 | MS.gene38024:intron | 35.0% |
| ! | CTGCAAAATTTTCCATTCTG+TGG | + | chr5.1:77383846-77383865 | MS.gene38024:CDS | 35.0% |
| ! | TAGGTCGATACTACCATTTT+GGG | + | chr5.1:77382908-77382927 | MS.gene38024:intron | 35.0% |
| ! | TTAGGTCGATACTACCATTT+TGG | + | chr5.1:77382907-77382926 | MS.gene38024:intron | 35.0% |
| !! | TCTTGATGATGAAAGAGCAA+AGG | + | chr5.1:77382931-77382950 | MS.gene38024:CDS | 35.0% |
| !! | TTTTGGTTGTCTCAAGACTT+TGG | - | chr5.1:77384622-77384641 | None:intergenic | 35.0% |
| !!! | CAAAAATGAGGGTTTTGTTG+AGG | + | chr5.1:77382104-77382123 | MS.gene38024:CDS | 35.0% |
| AACAGATGCTGATATCACTG+TGG | + | chr5.1:77382701-77382720 | MS.gene38024:CDS | 40.0% | |
| AAGGATGCGTTAATTCCTAG+TGG | + | chr5.1:77384950-77384969 | MS.gene38024:CDS | 40.0% | |
| AGATTTGATGTGGTCATTGC+AGG | + | chr5.1:77382551-77382570 | MS.gene38024:intron | 40.0% | |
| AGCTTTGCGTCGAAACATAA+AGG | - | chr5.1:77384371-77384390 | None:intergenic | 40.0% | |
| AGTCATTTGCACCAGGAAAT+TGG | - | chr5.1:77383027-77383046 | None:intergenic | 40.0% | |
| AGTCTATAGTTAGCTCCAAG+AGG | - | chr5.1:77381958-77381977 | None:intergenic | 40.0% | |
| ATGAAGCACATATGCGAACA+CGG | - | chr5.1:77381680-77381699 | None:intergenic | 40.0% | |
| ATTTACCTGAAGTCAGGTAC+AGG | - | chr5.1:77383500-77383519 | None:intergenic | 40.0% | |
| CATAAGCACGAGAAAGATGT+CGG | - | chr5.1:77382065-77382084 | None:intergenic | 40.0% | |
| CATCTTGGTCATCGTGTTTA+TGG | + | chr5.1:77383577-77383596 | MS.gene38024:intron | 40.0% | |
| CATTCGATACAAATGGTCAC+CGG | - | chr5.1:77382649-77382668 | None:intergenic | 40.0% | |
| CGGTATCGTCACAATAATCA+AGG | + | chr5.1:77384931-77384950 | MS.gene38024:CDS | 40.0% | |
| CTCTCTATGTCTCTGATCTT+TGG | - | chr5.1:77384655-77384674 | None:intergenic | 40.0% | |
| CTGATGAAGATCGATGAAGA+GGG | + | chr5.1:77382765-77382784 | MS.gene38024:CDS | 40.0% | |
| GAAGAAGAAGAAGAACAACG+TGG | - | chr5.1:77381306-77381325 | None:intergenic | 40.0% | |
| GACCAAAGATTAGGAACAGA+GGG | - | chr5.1:77384348-77384367 | None:intergenic | 40.0% | |
| GAGTAACAATCACATGCTTC+CGG | - | chr5.1:77381443-77381462 | None:intergenic | 40.0% | |
| GAGTTTCTGCCAATACCAAT+TGG | - | chr5.1:77384163-77384182 | None:intergenic | 40.0% | |
| GATTTGATGTGGTCATTGCA+GGG | + | chr5.1:77382552-77382571 | MS.gene38024:intron | 40.0% | |
| GCATGTGATTGTTACTCCTA+AGG | + | chr5.1:77381446-77381465 | MS.gene38024:CDS | 40.0% | |
| GCTTTGCGTCGAAACATAAA+GGG | - | chr5.1:77384370-77384389 | None:intergenic | 40.0% | |
| GTACTTGGCATTATACTTGG+AGG | + | chr5.1:77381877-77381896 | MS.gene38024:CDS | 40.0% | |
| GTTAAAGGCAGTGTTCCAAT+TGG | + | chr5.1:77384145-77384164 | MS.gene38024:CDS | 40.0% | |
| TATCGCGGTTGAGTGTAAAT+TGG | - | chr5.1:77383635-77383654 | None:intergenic | 40.0% | |
| TCAGCTCTTAGCTCCAAAAA+AGG | - | chr5.1:77381561-77381580 | None:intergenic | 40.0% | |
| TCATATGTTAGTGTCCGTGT+CGG | + | chr5.1:77381625-77381644 | MS.gene38024:intron | 40.0% | |
| TCTGATGAAGATCGATGAAG+AGG | + | chr5.1:77382764-77382783 | MS.gene38024:CDS | 40.0% | |
| TGATGAAGATCGATGAAGAG+GGG | + | chr5.1:77382766-77382785 | MS.gene38024:CDS | 40.0% | |
| TGGAACCAATTAGGATTCTC+AGG | - | chr5.1:77382150-77382169 | None:intergenic | 40.0% | |
| TGTGAATCAGAAACAGCCTT+AGG | - | chr5.1:77381465-77381484 | None:intergenic | 40.0% | |
| TTCCTGGTGCAAATGACTTT+GGG | + | chr5.1:77383029-77383048 | MS.gene38024:CDS | 40.0% | |
| TTCTCATCATCTCAACTCTC+TGG | + | chr5.1:77381369-77381388 | MS.gene38024:CDS | 40.0% | |
| TTTCCTGGTGCAAATGACTT+TGG | + | chr5.1:77383028-77383047 | MS.gene38024:CDS | 40.0% | |
| ! | ACTGATAGTGTTATTGGGGA+AGG | + | chr5.1:77383689-77383708 | MS.gene38024:CDS | 40.0% |
| ! | CAATCCATTTTCCTGGTGTT+TGG | + | chr5.1:77382479-77382498 | MS.gene38024:intron | 40.0% |
| ! | CTTCATGCAATCCATTTTCC+TGG | + | chr5.1:77382472-77382491 | MS.gene38024:intron | 40.0% |
| ! | CTTGGTGGCTACAAAAATGA+GGG | + | chr5.1:77382093-77382112 | MS.gene38024:CDS | 40.0% |
| ! | GCGGTTTAAAACTACTTGCA+CGG | + | chr5.1:77383950-77383969 | MS.gene38024:intron | 40.0% |
| ! | GGTCGATGCTTATGATTTGT+TGG | + | chr5.1:77383296-77383315 | MS.gene38024:intron | 40.0% |
| ! | TCTAGTCTTCAACCTACAAC+CGG | + | chr5.1:77382424-77382443 | MS.gene38024:intron | 40.0% |
| ! | TGAGAATCCTAATTGGTTCC+AGG | + | chr5.1:77382149-77382168 | MS.gene38024:CDS | 40.0% |
| ! | TTGGAGTACTTAATTCTGGC+CGG | + | chr5.1:77382627-77382646 | MS.gene38024:CDS | 40.0% |
| !! | TGTACTCAATGAGAGCATCT+TGG | + | chr5.1:77383562-77383581 | MS.gene38024:intron | 40.0% |
| !! | TTTGTTTTTCCCATCGGAAC+TGG | + | chr5.1:77383241-77383260 | MS.gene38024:intron | 40.0% |
| AAAAAGTCAGCCAGTTCCGA+TGG | - | chr5.1:77383254-77383273 | None:intergenic | 45.0% | |
| AAAAGCCTGTACCTGACTTC+AGG | + | chr5.1:77383492-77383511 | MS.gene38024:CDS | 45.0% | |
| AAAAGTCAGCCAGTTCCGAT+GGG | - | chr5.1:77383253-77383272 | None:intergenic | 45.0% | |
| ACATATGCGAACACGGATAC+TGG | - | chr5.1:77381673-77381692 | None:intergenic | 45.0% | |
| AGACCAGTTGCAAGCTATGA+AGG | + | chr5.1:77382821-77382840 | MS.gene38024:CDS | 45.0% | |
| ATCAACAGCTTCCAAACACC+AGG | - | chr5.1:77382493-77382512 | None:intergenic | 45.0% | |
| ATGGCTTCTATGGCTACTAC+TGG | + | chr5.1:77381267-77381286 | MS.gene38024:CDS | 45.0% | |
| ATTATACTTGGAGGTGGTGC+TGG | + | chr5.1:77381886-77381905 | MS.gene38024:CDS | 45.0% | |
| CATCTGTTTCCCTATGTGCT+TGG | - | chr5.1:77382689-77382708 | None:intergenic | 45.0% | |
| CGGTGACCATTTGTATCGAA+TGG | + | chr5.1:77382647-77382666 | MS.gene38024:CDS | 45.0% | |
| CTCCCTCTGTTCCTAATCTT+TGG | + | chr5.1:77384343-77384362 | MS.gene38024:intron | 45.0% | |
| CTTGGCATTATACTTGGAGG+TGG | + | chr5.1:77381880-77381899 | MS.gene38024:CDS | 45.0% | |
| GAACAGAGGGAGTAGATGAT+AGG | - | chr5.1:77384335-77384354 | None:intergenic | 45.0% | |
| GAAGCTGCAAGAGAAACTGA+AGG | + | chr5.1:77384893-77384912 | MS.gene38024:CDS | 45.0% | |
| GCTTCCAAACACCAGGAAAA+TGG | - | chr5.1:77382486-77382505 | None:intergenic | 45.0% | |
| GGAAGACATTGGTACCATTG+AGG | + | chr5.1:77383439-77383458 | MS.gene38024:CDS | 45.0% | |
| GGACCAAAGATTAGGAACAG+AGG | - | chr5.1:77384349-77384368 | None:intergenic | 45.0% | |
| GGATCGAGATTCACTGTAGT+CGG | + | chr5.1:77382316-77382335 | MS.gene38024:intron | 45.0% | |
| GGCAGTGTTCCAATTGGTAT+TGG | + | chr5.1:77384151-77384170 | MS.gene38024:CDS | 45.0% | |
| TCAGCATCAAGCATCTTCGA+TGG | - | chr5.1:77383665-77383684 | None:intergenic | 45.0% | |
| TGGGGAAGGATGTGTGATTA+AGG | + | chr5.1:77383703-77383722 | MS.gene38024:CDS | 45.0% | |
| TGGTGTTTGGAAGCTGTTGA+TGG | + | chr5.1:77382492-77382511 | MS.gene38024:intron | 45.0% | |
| TTCGATGGAGGCAAATATCG+CGG | - | chr5.1:77383650-77383669 | None:intergenic | 45.0% | |
| TTTCCAATGGAAGTAGCACC+AGG | - | chr5.1:77383067-77383086 | None:intergenic | 45.0% | |
| TTTGCTCTCTTCTTGGTGAG+TGG | - | chr5.1:77381925-77381944 | None:intergenic | 45.0% | |
| TTTGGGAGTGAAGTGATTCC+TGG | + | chr5.1:77383046-77383065 | MS.gene38024:CDS | 45.0% | |
| ! | CCTTGGTGGCTACAAAAATG+AGG | + | chr5.1:77382092-77382111 | MS.gene38024:CDS | 45.0% |
| ! | GAAAAGCGTGCAACTGCTTT+CGG | + | chr5.1:77382741-77382760 | MS.gene38024:CDS | 45.0% |
| ! | GAAGTCAGGTACAGGCTTTT+TGG | - | chr5.1:77383492-77383511 | None:intergenic | 45.0% |
| ! | TCACCTTCATAGCTTGCAAC+TGG | - | chr5.1:77382827-77382846 | None:intergenic | 45.0% |
| !! | ATTCCTGGTGCTACTTCCAT+TGG | + | chr5.1:77383061-77383080 | MS.gene38024:CDS | 45.0% |
| !! | CCTCATTTTTGTAGCCACCA+AGG | - | chr5.1:77382095-77382114 | None:intergenic | 45.0% |
| !!! | AGCTGGTTTTGCTCTCTTCT+TGG | - | chr5.1:77381932-77381951 | None:intergenic | 45.0% |
| AAACTCACTCTGCTAGCGTC+AGG | - | chr5.1:77381510-77381529 | None:intergenic | 50.0% | |
| CAGGAAGAGGAAGATGCATC+CGG | + | chr5.1:77381421-77381440 | MS.gene38024:CDS | 50.0% | |
| CGTGCTTATGCAAGCAACCT+TGG | + | chr5.1:77382075-77382094 | MS.gene38024:CDS | 50.0% | |
| CTCCCAAAGTCATTTGCACC+AGG | - | chr5.1:77383034-77383053 | None:intergenic | 50.0% | |
| CTGCGGTCTTGCATATCAGA+AGG | + | chr5.1:77383874-77383893 | MS.gene38024:CDS | 50.0% | |
| GATGGCTACTGGGAAGACAT+TGG | + | chr5.1:77383428-77383447 | MS.gene38024:CDS | 50.0% | |
| GCAAAACCAGCTGTTCCTCT+TGG | + | chr5.1:77381940-77381959 | MS.gene38024:CDS | 50.0% | |
| GCATCAAGCATCTTCGATGG+AGG | - | chr5.1:77383662-77383681 | None:intergenic | 50.0% | |
| GCTTATGCAAGCAACCTTGG+TGG | + | chr5.1:77382078-77382097 | MS.gene38024:CDS | 50.0% | |
| TTAGCTCCAAGAGGAACAGC+TGG | - | chr5.1:77381949-77381968 | None:intergenic | 50.0% | |
| TTGCTTCGCGACCAATTTCC+TGG | + | chr5.1:77383013-77383032 | MS.gene38024:CDS | 50.0% | |
| ! | AGACACTTTGTTGATGGGCG+CGG | + | chr5.1:77383909-77383928 | MS.gene38024:CDS | 50.0% |
| ! | GATGGGCGCGGATTATTATG+AGG | + | chr5.1:77383921-77383940 | MS.gene38024:CDS | 50.0% |
| ! | GTTGCACGCTTTTCGTCCAT+TGG | - | chr5.1:77382735-77382754 | None:intergenic | 50.0% |
| !! | GCTTGCAACTGGTCTCCTTT+TGG | - | chr5.1:77382816-77382835 | None:intergenic | 50.0% |
| !! | GTTACAGTTTCTGGTGGTGC+AGG | + | chr5.1:77381402-77381421 | MS.gene38024:CDS | 50.0% |
| CACTGTGGCTGCATTGCCAA+TGG | + | chr5.1:77382716-77382735 | MS.gene38024:CDS | 55.0% | |
| CGAACACCAACACACCGACA+CGG | - | chr5.1:77381642-77381661 | None:intergenic | 55.0% | |
| CTCTGCTAGCGTCAGGATCA+AGG | - | chr5.1:77381503-77381522 | None:intergenic | 55.0% | |
| ! | TAGTGTCCGTGTCGGTGTGT+TGG | + | chr5.1:77381633-77381652 | MS.gene38024:intron | 55.0% |
| !! | AGGGTACTGCAGATGCTGTG+AGG | + | chr5.1:77382571-77382590 | MS.gene38024:intron | 55.0% |
| !! | GTTTCTGGTGGTGCAGGAAG+AGG | + | chr5.1:77381408-77381427 | MS.gene38024:CDS | 55.0% |
| TCCATTCTGTGGTCGGGCTG+CGG | + | chr5.1:77383857-77383876 | MS.gene38024:CDS | 60.0% | |
| ACCGCAGCCCGACCACAGAA+TGG | - | chr5.1:77383861-77383880 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.1 | gene | 77381267 | 77384985 | 77381267 | ID=MS.gene38024 |
| chr5.1 | mRNA | 77381267 | 77384985 | 77381267 | ID=MS.gene38024.t1;Parent=MS.gene38024 |
| chr5.1 | exon | 77381267 | 77381521 | 77381267 | ID=MS.gene38024.t1.exon1;Parent=MS.gene38024.t1 |
| chr5.1 | CDS | 77381267 | 77381521 | 77381267 | ID=cds.MS.gene38024.t1;Parent=MS.gene38024.t1 |
| chr5.1 | exon | 77381874 | 77382170 | 77381874 | ID=MS.gene38024.t1.exon2;Parent=MS.gene38024.t1 |
| chr5.1 | CDS | 77381874 | 77382170 | 77381874 | ID=cds.MS.gene38024.t1;Parent=MS.gene38024.t1 |
| chr5.1 | exon | 77382573 | 77382842 | 77382573 | ID=MS.gene38024.t1.exon3;Parent=MS.gene38024.t1 |
| chr5.1 | CDS | 77382573 | 77382842 | 77382573 | ID=cds.MS.gene38024.t1;Parent=MS.gene38024.t1 |
| chr5.1 | exon | 77382911 | 77383090 | 77382911 | ID=MS.gene38024.t1.exon4;Parent=MS.gene38024.t1 |
| chr5.1 | CDS | 77382911 | 77383090 | 77382911 | ID=cds.MS.gene38024.t1;Parent=MS.gene38024.t1 |
| chr5.1 | exon | 77383410 | 77383513 | 77383410 | ID=MS.gene38024.t1.exon5;Parent=MS.gene38024.t1 |
| chr5.1 | CDS | 77383410 | 77383513 | 77383410 | ID=cds.MS.gene38024.t1;Parent=MS.gene38024.t1 |
| chr5.1 | exon | 77383613 | 77383724 | 77383613 | ID=MS.gene38024.t1.exon6;Parent=MS.gene38024.t1 |
| chr5.1 | CDS | 77383613 | 77383724 | 77383613 | ID=cds.MS.gene38024.t1;Parent=MS.gene38024.t1 |
| chr5.1 | exon | 77383844 | 77383942 | 77383844 | ID=MS.gene38024.t1.exon7;Parent=MS.gene38024.t1 |
| chr5.1 | CDS | 77383844 | 77383942 | 77383844 | ID=cds.MS.gene38024.t1;Parent=MS.gene38024.t1 |
| chr5.1 | exon | 77384118 | 77384237 | 77384118 | ID=MS.gene38024.t1.exon8;Parent=MS.gene38024.t1 |
| chr5.1 | CDS | 77384118 | 77384237 | 77384118 | ID=cds.MS.gene38024.t1;Parent=MS.gene38024.t1 |
| chr5.1 | exon | 77384869 | 77384985 | 77384869 | ID=MS.gene38024.t1.exon9;Parent=MS.gene38024.t1 |
| chr5.1 | CDS | 77384869 | 77384985 | 77384869 | ID=cds.MS.gene38024.t1;Parent=MS.gene38024.t1 |
| Gene Sequence |
| Protein sequence |
