Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene92154.t1 | XP_003596089.2 | 97.7 | 392 | 9 | 0 | 1 | 392 | 1 | 392 | 3.10E-219 | 770.8 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene92154.t1 | G7IQY1 | 97.7 | 392 | 9 | 0 | 1 | 392 | 1 | 392 | 2.2e-219 | 770.8 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene049171 | MS.gene92154 | 0.816214 | 6.21E-52 | -1.69E-46 |
MS.gene049173 | MS.gene92154 | 0.833362 | 5.57E-56 | -1.69E-46 |
MS.gene049217 | MS.gene92154 | 0.811134 | 8.15E-51 | -1.69E-46 |
MS.gene049222 | MS.gene92154 | 0.834601 | 2.73E-56 | -1.69E-46 |
MS.gene049285 | MS.gene92154 | 0.838939 | 2.13E-57 | -1.69E-46 |
MS.gene049320 | MS.gene92154 | 0.81706 | 4.01E-52 | -1.69E-46 |
MS.gene049633 | MS.gene92154 | 0.855375 | 6.58E-62 | -1.69E-46 |
MS.gene050163 | MS.gene92154 | 0.834527 | 2.85E-56 | -1.69E-46 |
MS.gene050165 | MS.gene92154 | 0.846374 | 2.26E-59 | -1.69E-46 |
MS.gene050323 | MS.gene92154 | 0.813288 | 2.76E-51 | -1.69E-46 |
MS.gene050333 | MS.gene92154 | 0.851342 | 9.44E-61 | -1.69E-46 |
MS.gene050444 | MS.gene92154 | 0.879246 | 1.46E-69 | -1.69E-46 |
MS.gene050504 | MS.gene92154 | 0.826567 | 2.53E-54 | -1.69E-46 |
MS.gene050612 | MS.gene92154 | 0.823702 | 1.20E-53 | -1.69E-46 |
MS.gene050675 | MS.gene92154 | 0.817107 | 3.92E-52 | -1.69E-46 |
MS.gene050772 | MS.gene92154 | 0.816012 | 6.88E-52 | -1.69E-46 |
MS.gene05079 | MS.gene92154 | -0.814962 | 1.18E-51 | -1.69E-46 |
MS.gene05080 | MS.gene92154 | 0.8151 | 1.10E-51 | -1.69E-46 |
MS.gene050868 | MS.gene92154 | 0.817596 | 3.04E-52 | -1.69E-46 |
MS.gene050871 | MS.gene92154 | 0.817902 | 2.59E-52 | -1.69E-46 |
MS.gene050876 | MS.gene92154 | 0.834686 | 2.60E-56 | -1.69E-46 |
MS.gene050904 | MS.gene92154 | 0.845347 | 4.30E-59 | -1.69E-46 |
MS.gene051228 | MS.gene92154 | 0.835682 | 1.46E-56 | -1.69E-46 |
MS.gene051268 | MS.gene92154 | 0.817144 | 3.84E-52 | -1.69E-46 |
MS.gene051317 | MS.gene92154 | 0.813069 | 3.08E-51 | -1.69E-46 |
MS.gene051617 | MS.gene92154 | 0.804316 | 2.29E-49 | -1.69E-46 |
MS.gene051810 | MS.gene92154 | 0.829281 | 5.62E-55 | -1.69E-46 |
MS.gene051858 | MS.gene92154 | 0.801429 | 9.04E-49 | -1.69E-46 |
MS.gene051874 | MS.gene92154 | 0.80399 | 2.68E-49 | -1.69E-46 |
MS.gene051949 | MS.gene92154 | 0.859708 | 3.43E-63 | -1.69E-46 |
MS.gene052379 | MS.gene92154 | 0.816559 | 5.19E-52 | -1.69E-46 |
MS.gene052870 | MS.gene92154 | 0.854538 | 1.15E-61 | -1.69E-46 |
MS.gene052872 | MS.gene92154 | 0.871189 | 8.26E-67 | -1.69E-46 |
MS.gene052966 | MS.gene92154 | 0.813564 | 2.40E-51 | -1.69E-46 |
MS.gene053479 | MS.gene92154 | 0.812159 | 4.88E-51 | -1.69E-46 |
MS.gene053632 | MS.gene92154 | 0.806878 | 6.64E-50 | -1.69E-46 |
MS.gene053824 | MS.gene92154 | 0.832464 | 9.31E-56 | -1.69E-46 |
MS.gene053916 | MS.gene92154 | 0.819737 | 9.93E-53 | -1.69E-46 |
MS.gene054600 | MS.gene92154 | 0.806355 | 8.56E-50 | -1.69E-46 |
MS.gene054642 | MS.gene92154 | 0.816065 | 6.70E-52 | -1.69E-46 |
MS.gene05494 | MS.gene92154 | 0.826568 | 2.53E-54 | -1.69E-46 |
MS.gene054954 | MS.gene92154 | 0.818045 | 2.41E-52 | -1.69E-46 |
MS.gene055362 | MS.gene92154 | 0.810688 | 1.02E-50 | -1.69E-46 |
MS.gene055502 | MS.gene92154 | 0.820014 | 8.58E-53 | -1.69E-46 |
MS.gene055577 | MS.gene92154 | 0.813799 | 2.13E-51 | -1.69E-46 |
MS.gene055722 | MS.gene92154 | 0.813858 | 2.07E-51 | -1.69E-46 |
MS.gene055748 | MS.gene92154 | 0.839593 | 1.44E-57 | -1.69E-46 |
MS.gene055750 | MS.gene92154 | 0.830676 | 2.57E-55 | -1.69E-46 |
MS.gene055751 | MS.gene92154 | 0.855601 | 5.66E-62 | -1.69E-46 |
MS.gene055776 | MS.gene92154 | 0.80034 | 1.51E-48 | -1.69E-46 |
MS.gene05589 | MS.gene92154 | 0.821633 | 3.64E-53 | -1.69E-46 |
MS.gene055941 | MS.gene92154 | 0.819838 | 9.41E-53 | -1.69E-46 |
MS.gene056283 | MS.gene92154 | 0.81168 | 6.20E-51 | -1.69E-46 |
MS.gene056387 | MS.gene92154 | 0.824265 | 8.86E-54 | -1.69E-46 |
MS.gene056449 | MS.gene92154 | 0.827331 | 1.66E-54 | -1.69E-46 |
MS.gene056504 | MS.gene92154 | 0.822362 | 2.47E-53 | -1.69E-46 |
MS.gene056510 | MS.gene92154 | 0.82897 | 6.68E-55 | -1.69E-46 |
MS.gene056549 | MS.gene92154 | 0.828737 | 7.61E-55 | -1.69E-46 |
MS.gene056657 | MS.gene92154 | 0.825587 | 4.32E-54 | -1.69E-46 |
MS.gene056903 | MS.gene92154 | 0.818624 | 1.78E-52 | -1.69E-46 |
MS.gene057076 | MS.gene92154 | 0.804248 | 2.37E-49 | -1.69E-46 |
MS.gene057857 | MS.gene92154 | 0.81165 | 6.30E-51 | -1.69E-46 |
MS.gene058419 | MS.gene92154 | 0.818347 | 2.06E-52 | -1.69E-46 |
MS.gene058723 | MS.gene92154 | 0.815251 | 1.02E-51 | -1.69E-46 |
MS.gene058773 | MS.gene92154 | 0.844449 | 7.51E-59 | -1.69E-46 |
MS.gene059022 | MS.gene92154 | 0.830008 | 3.74E-55 | -1.69E-46 |
MS.gene059023 | MS.gene92154 | 0.827091 | 1.89E-54 | -1.69E-46 |
MS.gene059079 | MS.gene92154 | 0.825877 | 3.69E-54 | -1.69E-46 |
MS.gene05912 | MS.gene92154 | 0.810495 | 1.12E-50 | -1.69E-46 |
MS.gene05913 | MS.gene92154 | 0.814366 | 1.60E-51 | -1.69E-46 |
MS.gene059305 | MS.gene92154 | 0.815999 | 6.93E-52 | -1.69E-46 |
MS.gene059677 | MS.gene92154 | 0.835521 | 1.60E-56 | -1.69E-46 |
MS.gene059718 | MS.gene92154 | 0.814405 | 1.57E-51 | -1.69E-46 |
MS.gene059865 | MS.gene92154 | 0.831407 | 1.70E-55 | -1.69E-46 |
MS.gene060703 | MS.gene92154 | 0.818334 | 2.07E-52 | -1.69E-46 |
MS.gene060762 | MS.gene92154 | 0.857491 | 1.57E-62 | -1.69E-46 |
MS.gene06077 | MS.gene92154 | 0.801064 | 1.07E-48 | -1.69E-46 |
MS.gene060832 | MS.gene92154 | 0.824774 | 6.73E-54 | -1.69E-46 |
MS.gene060981 | MS.gene92154 | 0.816166 | 6.36E-52 | -1.69E-46 |
MS.gene060982 | MS.gene92154 | 0.813641 | 2.31E-51 | -1.69E-46 |
MS.gene06111 | MS.gene92154 | 0.811423 | 7.05E-51 | -1.69E-46 |
MS.gene061150 | MS.gene92154 | 0.815166 | 1.06E-51 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene92154.t1 | MTR_2g066060 | 97.704 | 392 | 9 | 0 | 1 | 392 | 1 | 392 | 0.0 | 790 |
MS.gene92154.t1 | MTR_2g066060 | 97.059 | 272 | 8 | 0 | 1 | 272 | 1 | 272 | 0.0 | 546 |
MS.gene92154.t1 | MTR_7g114070 | 28.777 | 278 | 184 | 6 | 123 | 388 | 60 | 335 | 7.48e-21 | 92.8 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene92154.t1 | AT1G56180 | 68.992 | 387 | 95 | 6 | 19 | 392 | 15 | 389 | 0.0 | 533 |
MS.gene92154.t1 | AT1G56180 | 63.823 | 293 | 81 | 6 | 19 | 298 | 15 | 295 | 5.28e-128 | 370 |
MS.gene92154.t1 | AT5G27290 | 31.953 | 169 | 103 | 3 | 226 | 388 | 174 | 336 | 7.82e-22 | 95.9 |
MS.gene92154.t1 | AT2G21960 | 34.337 | 166 | 100 | 1 | 220 | 385 | 173 | 329 | 1.07e-18 | 86.7 |
Find 122 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
GCAGCTGAGGCTCTTATTTA+TGG | 0.164924 | 2.4:-27843512 | MS.gene92154:CDS |
CCCATTTGCATTGCAACTAT+TGG | 0.199577 | 2.4:+27846827 | None:intergenic |
TTTAGGCAGGGACTCAGTTT+TGG | 0.224980 | 2.4:-27845983 | MS.gene92154:intron |
TTTGGTAAATGCAGAAATAT+TGG | 0.236327 | 2.4:-27851235 | MS.gene92154:intron |
TGAGAAAATGAGGGAAAATT+TGG | 0.256595 | 2.4:+27851611 | None:intergenic |
TTTCTGCATTTACCAAAATT+AGG | 0.271528 | 2.4:+27851241 | None:intergenic |
TCCGAGAGACCCCACTTCTT+TGG | 0.291537 | 2.4:+27847207 | None:intergenic |
TCTAAAATCACCCCTCGAAT+TGG | 0.320168 | 2.4:+27846851 | None:intergenic |
CTTTGCAGATTCTATATTCC+TGG | 0.328033 | 2.4:-27847082 | MS.gene92154:CDS |
GAAGCAGGACATCTCTTAAT+AGG | 0.332947 | 2.4:-27846994 | MS.gene92154:intron |
GCAGTCTGAGTGCTGTAATT+AGG | 0.353790 | 2.4:-27843206 | MS.gene92154:CDS |
TAGCTCAAATATCAAGTTAC+TGG | 0.359297 | 2.4:-27847047 | MS.gene92154:CDS |
CCCAACCTTGCAGTGATATT+AGG | 0.376762 | 2.4:-27847111 | MS.gene92154:CDS |
CTTGAGCTCCTCAACTGGTT+TGG | 0.377068 | 2.4:-27847408 | MS.gene92154:CDS |
TCCAATAGTTGCAATGCAAA+TGG | 0.383334 | 2.4:-27846828 | MS.gene92154:CDS |
GGACGGTTCAAGCACTGCTT+TGG | 0.390465 | 2.4:-27847187 | MS.gene92154:CDS |
ACGAGGATTCGACGCCTATA+TGG | 0.395003 | 2.4:+27847021 | None:intergenic |
CTCCGGTGGCCGAGTTGACT+CGG | 0.402301 | 2.4:-27851393 | MS.gene92154:CDS |
TGTTCGGTCCGCAGAGGGAT+TGG | 0.409605 | 2.4:-27851348 | MS.gene92154:CDS |
GAATGCTTATAAGTTTCTTA+AGG | 0.416498 | 2.4:-27851278 | MS.gene92154:CDS |
TGAGGAGAGGTGAGAAAATG+AGG | 0.421400 | 2.4:+27851601 | None:intergenic |
CTCGAATTGGGCAACCCATC+AGG | 0.424005 | 2.4:+27846864 | None:intergenic |
TTCTGCAGTTACGCGTTGTT+CGG | 0.425988 | 2.4:+27851435 | None:intergenic |
CTAAAATCACCCCTCGAATT+GGG | 0.427743 | 2.4:+27846852 | None:intergenic |
CAAGTTACTGGCCACCATAT+AGG | 0.432077 | 2.4:-27847035 | MS.gene92154:CDS |
CTTGCTGAAGGCCGACTAGA+TGG | 0.432462 | 2.4:-27845939 | MS.gene92154:CDS |
GTAATCGCGCCATTCTTTGA+AGG | 0.436545 | 2.4:+27851519 | None:intergenic |
GTTCGGTCCGCAGAGGGATT+GGG | 0.438088 | 2.4:-27851347 | MS.gene92154:CDS |
CCTAATATCACTGCAAGGTT+GGG | 0.444547 | 2.4:+27847111 | None:intergenic |
TTATAAGTTTCTTAAGGATA+GGG | 0.447210 | 2.4:-27851272 | MS.gene92154:CDS |
GGAGAACCTCCGTCAGTAAA+CGG | 0.451073 | 2.4:+27851412 | None:intergenic |
CGAATCCTCGTTCATGAAGC+AGG | 0.452309 | 2.4:-27847009 | MS.gene92154:CDS |
CTTATAAGTTTCTTAAGGAT+AGG | 0.452608 | 2.4:-27851273 | MS.gene92154:CDS |
GATGTCTTGAGCTCCTCAAC+TGG | 0.453518 | 2.4:-27847413 | MS.gene92154:CDS |
GTTGAGGAGCTCAAGACATC+TGG | 0.457506 | 2.4:+27847416 | None:intergenic |
AGCTCCTCAACTGGTTTGGA+AGG | 0.463058 | 2.4:-27847404 | MS.gene92154:intron |
CACTCACCGCCTTCAAAGAA+TGG | 0.473473 | 2.4:-27851528 | MS.gene92154:CDS |
AAAATTTCAGCTTACCTGAT+GGG | 0.475730 | 2.4:-27846878 | MS.gene92154:intron |
TTACGCGTTGTTCGGTTTCG+AGG | 0.476415 | 2.4:+27851443 | None:intergenic |
AATCTTATAATTTGCTCAAG+TGG | 0.477761 | 2.4:-27843275 | MS.gene92154:CDS |
ACTTGATATTTGAGCTAGAC+AGG | 0.483314 | 2.4:+27847053 | None:intergenic |
AGTAAAAGAATACCTGTCCT+TGG | 0.484905 | 2.4:+27846801 | None:intergenic |
GGGAAAATTTGGAGGTGAAA+GGG | 0.487539 | 2.4:+27851622 | None:intergenic |
CTGATGGGTTGCCCAATTCG+AGG | 0.488290 | 2.4:-27846863 | MS.gene92154:CDS |
TGGCCGAGTTGACTCGGACT+CGG | 0.489152 | 2.4:-27851387 | MS.gene92154:CDS |
TAAAATTTCAGCTTACCTGA+TGG | 0.489639 | 2.4:-27846879 | MS.gene92154:intron |
TCCAAAGAAGTGGGGTCTCT+CGG | 0.490227 | 2.4:-27847208 | MS.gene92154:CDS |
CCAATAGTTGCAATGCAAAT+GGG | 0.492043 | 2.4:-27846827 | MS.gene92154:CDS |
TGATGGGTTGCCCAATTCGA+GGG | 0.493134 | 2.4:-27846862 | MS.gene92154:CDS |
CTAAACTTGCTCCAAAGAAG+TGG | 0.499524 | 2.4:-27847218 | MS.gene92154:CDS |
ACCTAATATCACTGCAAGGT+TGG | 0.503942 | 2.4:+27847110 | None:intergenic |
CTTATTTATGGTGAGGCAGA+GGG | 0.507075 | 2.4:-27843500 | MS.gene92154:CDS |
ACATCTGGTGTTACATTCCT+CGG | 0.513237 | 2.4:+27847431 | None:intergenic |
GTCCGAGTCAACTCGGCCAC+CGG | 0.513752 | 2.4:+27851391 | None:intergenic |
TACGCGTTGTTCGGTTTCGA+GGG | 0.514368 | 2.4:+27851444 | None:intergenic |
AATTTGGAGGTGAAAGGGAG+AGG | 0.519668 | 2.4:+27851627 | None:intergenic |
GTTTACTGACGGAGGTTCTC+CGG | 0.520526 | 2.4:-27851410 | MS.gene92154:CDS |
TCGGACTCGGTTCCGCGAGT+TGG | 0.520608 | 2.4:-27851374 | MS.gene92154:CDS |
TTTGCAGATTCTATATTCCT+GGG | 0.522149 | 2.4:-27847081 | MS.gene92154:CDS |
TCAATGGTTTAGGTACTGTA+TGG | 0.525867 | 2.4:-27843552 | MS.gene92154:intron |
GCCTCCATTGTCTGTAGCAG+AGG | 0.526930 | 2.4:-27843429 | MS.gene92154:intron |
TCGGCCTTCAGCAAGGTCGC+TGG | 0.528447 | 2.4:+27845947 | None:intergenic |
CCGAGCTGCTGTTAAAGCAT+TGG | 0.528568 | 2.4:-27843238 | MS.gene92154:CDS |
CGGAGAGGTTTGCGTGTCGC+CGG | 0.530292 | 2.4:+27851559 | None:intergenic |
AGGGAAAATTTGGAGGTGAA+AGG | 0.531812 | 2.4:+27851621 | None:intergenic |
GAGGAGAGGTGAGAAAATGA+GGG | 0.531942 | 2.4:+27851602 | None:intergenic |
TTCCGCGAGTTGGAGATGTT+CGG | 0.537060 | 2.4:-27851364 | MS.gene92154:CDS |
TCTTATTTATGGTGAGGCAG+AGG | 0.537919 | 2.4:-27843501 | MS.gene92154:CDS |
TATAAGTTTCTTAAGGATAG+GGG | 0.539138 | 2.4:-27851271 | MS.gene92154:CDS |
GGGAAAGTGCGGGAAAATTG+AGG | 0.539904 | 2.4:+27851583 | None:intergenic |
TATTCCTTGTGAAATAAGAA+AGG | 0.544423 | 2.4:+27847143 | None:intergenic |
CTTTGAAGGCGGTGAGTGGT+CGG | 0.546232 | 2.4:+27851533 | None:intergenic |
GAAAATGAGGGAAAATTTGG+AGG | 0.560611 | 2.4:+27851614 | None:intergenic |
AGAGGTTTGCGTGTCGCCGG+AGG | 0.561589 | 2.4:+27851562 | None:intergenic |
TGCACCTTCCAAACCAGTTG+AGG | 0.562851 | 2.4:+27847400 | None:intergenic |
TCACTGCAAGGTTGGGTCTG+AGG | 0.564118 | 2.4:+27847118 | None:intergenic |
GGAGATGTTCGGTCCGCAGA+GGG | 0.565156 | 2.4:-27851353 | MS.gene92154:CDS |
GCAAATGGGTATCCAAGGAC+AGG | 0.566483 | 2.4:-27846813 | MS.gene92154:intron |
TAAACTTGCTCCAAAGAAGT+GGG | 0.569605 | 2.4:-27847217 | MS.gene92154:CDS |
AGGCGGTGAGTGGTCGGAGA+CGG | 0.571801 | 2.4:+27851539 | None:intergenic |
AAGACCTCTGCTACAGACAA+TGG | 0.575943 | 2.4:+27843425 | None:intergenic |
CCAATGCTTTAACAGCAGCT+CGG | 0.580868 | 2.4:+27843238 | None:intergenic |
CATTCTTTGAAGGCGGTGAG+TGG | 0.582217 | 2.4:+27851529 | None:intergenic |
GCAATGCAAATGGGTATCCA+AGG | 0.590300 | 2.4:-27846818 | MS.gene92154:CDS |
GAGCTAGACAGGTACCTCCC+AGG | 0.591504 | 2.4:+27847064 | None:intergenic |
GTGTCCTTTCTTATTTCACA+AGG | 0.591796 | 2.4:-27847147 | MS.gene92154:CDS |
GAACCGAGTCCGAGTCAACT+CGG | 0.596001 | 2.4:+27851384 | None:intergenic |
GTCTGAGTGCTGTAATTAGG+AGG | 0.596484 | 2.4:-27843203 | MS.gene92154:CDS |
AAGAAGTGGGGTCTCTCGGA+CGG | 0.597874 | 2.4:-27847204 | MS.gene92154:CDS |
TGAGGCTCTTATTTATGGTG+AGG | 0.600518 | 2.4:-27843507 | MS.gene92154:CDS |
GTGTCGCCGGAGGGAAAGTG+CGG | 0.600626 | 2.4:+27851572 | None:intergenic |
GAGGTTTGCGTGTCGCCGGA+GGG | 0.601554 | 2.4:+27851563 | None:intergenic |
GTCTAATCAAGCACGATGGT+CGG | 0.601939 | 2.4:-27843304 | MS.gene92154:CDS |
TGTCGCCGGAGGGAAAGTGC+GGG | 0.614609 | 2.4:+27851573 | None:intergenic |
GTGAAAGGGAGAGGAAGACA+TGG | 0.616317 | 2.4:+27851636 | None:intergenic |
GTTGCCAGCGACCTTGCTGA+AGG | 0.623473 | 2.4:-27845951 | MS.gene92154:CDS |
ATTTATGGTGAGGCAGAGGG+TGG | 0.624370 | 2.4:-27843497 | MS.gene92154:CDS |
CATCTAGTCGGCCTTCAGCA+AGG | 0.633811 | 2.4:+27845940 | None:intergenic |
CAGGAATATAGAATCTGCAA+AGG | 0.635173 | 2.4:+27847083 | None:intergenic |
GCTGTTAAAGCATTGGAAAG+TGG | 0.642904 | 2.4:-27843231 | MS.gene92154:CDS |
ATCGCGCCATTCTTTGAAGG+CGG | 0.644042 | 2.4:+27851522 | None:intergenic |
AGGATTCGACGCCTATATGG+TGG | 0.647757 | 2.4:+27847024 | None:intergenic |
CAAAAGCTGAACCATCTAGT+CGG | 0.651547 | 2.4:+27845928 | None:intergenic |
GTAAAACGCAAAGACCTCGC+CGG | 0.654740 | 2.4:-27851487 | MS.gene92154:CDS |
TGCTGTAATTAGGAGGATCG+AGG | 0.654984 | 2.4:-27843196 | MS.gene92154:CDS |
AGTGCGGGAAAATTGAGGAG+AGG | 0.655475 | 2.4:+27851588 | None:intergenic |
GACCGAACATCTCCAACTCG+CGG | 0.656076 | 2.4:+27851362 | None:intergenic |
GATGTCCTGCTTCATGAACG+AGG | 0.658768 | 2.4:+27847004 | None:intergenic |
GTGAGTGGTCGGAGACGGAG+AGG | 0.659853 | 2.4:+27851544 | None:intergenic |
GATGGGTTGCCCAATTCGAG+GGG | 0.663402 | 2.4:-27846861 | MS.gene92154:CDS |
CTAGACCTAATATCACTGCA+AGG | 0.666706 | 2.4:+27847106 | None:intergenic |
TGGAGATGTTCGGTCCGCAG+AGG | 0.666720 | 2.4:-27851354 | MS.gene92154:CDS |
GCAGAACCGTTTACTGACGG+AGG | 0.669090 | 2.4:-27851418 | MS.gene92154:CDS |
ACCTCTGCTACAGACAATGG+AGG | 0.669231 | 2.4:+27843428 | None:intergenic |
GCAGATTCTATATTCCTGGG+AGG | 0.678010 | 2.4:-27847078 | MS.gene92154:CDS |
TACTGACGGAGGTTCTCCGG+TGG | 0.685988 | 2.4:-27851407 | MS.gene92154:CDS |
ACTGCAGAACCGTTTACTGA+CGG | 0.687216 | 2.4:-27851421 | MS.gene92154:CDS |
AAACTTGCTCCAAAGAAGTG+GGG | 0.696869 | 2.4:-27847216 | MS.gene92154:CDS |
AGAACTTCCCAATCCCTCTG+CGG | 0.699994 | 2.4:+27851340 | None:intergenic |
GTTAAAGCATTGGAAAGTGG+TGG | 0.709004 | 2.4:-27843228 | MS.gene92154:CDS |
GGAAACTGAGAGCTCCGGCG+AGG | 0.709664 | 2.4:+27851473 | None:intergenic |
AGATGTCTAATCAAGCACGA+TGG | 0.749964 | 2.4:-27843308 | MS.gene92154:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr2.4 | gene | 27843173 | 27851662 | 27843173 | ID=MS.gene92154 |
chr2.4 | mRNA | 27843173 | 27851662 | 27843173 | ID=MS.gene92154.t1;Parent=MS.gene92154 |
chr2.4 | exon | 27851236 | 27851662 | 27851236 | ID=MS.gene92154.t1.exon1;Parent=MS.gene92154.t1 |
chr2.4 | CDS | 27851236 | 27851662 | 27851236 | ID=cds.MS.gene92154.t1;Parent=MS.gene92154.t1 |
chr2.4 | exon | 27847405 | 27847464 | 27847405 | ID=MS.gene92154.t1.exon2;Parent=MS.gene92154.t1 |
chr2.4 | CDS | 27847405 | 27847464 | 27847405 | ID=cds.MS.gene92154.t1;Parent=MS.gene92154.t1 |
chr2.4 | exon | 27846995 | 27847243 | 27846995 | ID=MS.gene92154.t1.exon3;Parent=MS.gene92154.t1 |
chr2.4 | CDS | 27846995 | 27847243 | 27846995 | ID=cds.MS.gene92154.t1;Parent=MS.gene92154.t1 |
chr2.4 | exon | 27846814 | 27846890 | 27846814 | ID=MS.gene92154.t1.exon4;Parent=MS.gene92154.t1 |
chr2.4 | CDS | 27846814 | 27846890 | 27846814 | ID=cds.MS.gene92154.t1;Parent=MS.gene92154.t1 |
chr2.4 | exon | 27845924 | 27846000 | 27845924 | ID=MS.gene92154.t1.exon5;Parent=MS.gene92154.t1 |
chr2.4 | CDS | 27845924 | 27846000 | 27845924 | ID=cds.MS.gene92154.t1;Parent=MS.gene92154.t1 |
chr2.4 | exon | 27843430 | 27843562 | 27843430 | ID=MS.gene92154.t1.exon6;Parent=MS.gene92154.t1 |
chr2.4 | CDS | 27843430 | 27843562 | 27843430 | ID=cds.MS.gene92154.t1;Parent=MS.gene92154.t1 |
chr2.4 | exon | 27843173 | 27843328 | 27843173 | ID=MS.gene92154.t1.exon7;Parent=MS.gene92154.t1 |
chr2.4 | CDS | 27843173 | 27843328 | 27843173 | ID=cds.MS.gene92154.t1;Parent=MS.gene92154.t1 |
Gene Sequence |
Protein sequence |