Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene20267.t1 | XP_003611629.1 | 99.4 | 312 | 2 | 0 | 1 | 312 | 1 | 312 | 5.40E-174 | 620.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene20267.t1 | Q9FN15 | 76.0 | 275 | 64 | 1 | 40 | 312 | 53 | 327 | 6.5e-120 | 431.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene20267.t1 | G7IU15 | 99.4 | 312 | 2 | 0 | 1 | 312 | 1 | 312 | 3.9e-174 | 620.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049171 | MS.gene20267 | 0.838188 | 3.33E-57 | -1.69E-46 |
| MS.gene049222 | MS.gene20267 | 0.83159 | 1.53E-55 | -1.69E-46 |
| MS.gene049232 | MS.gene20267 | 0.801287 | 9.67E-49 | -1.69E-46 |
| MS.gene049285 | MS.gene20267 | 0.810849 | 9.40E-51 | -1.69E-46 |
| MS.gene049356 | MS.gene20267 | 0.83096 | 2.19E-55 | -1.69E-46 |
| MS.gene049369 | MS.gene20267 | 0.842019 | 3.34E-58 | -1.69E-46 |
| MS.gene049396 | MS.gene20267 | 0.868336 | 7.04E-66 | -1.69E-46 |
| MS.gene049488 | MS.gene20267 | 0.803503 | 3.38E-49 | -1.69E-46 |
| MS.gene049609 | MS.gene20267 | 0.869948 | 2.11E-66 | -1.69E-46 |
| MS.gene049633 | MS.gene20267 | 0.874825 | 4.99E-68 | -1.69E-46 |
| MS.gene049805 | MS.gene20267 | 0.831605 | 1.52E-55 | -1.69E-46 |
| MS.gene050170 | MS.gene20267 | 0.852463 | 4.54E-61 | -1.69E-46 |
| MS.gene050323 | MS.gene20267 | 0.848279 | 6.78E-60 | -1.69E-46 |
| MS.gene050375 | MS.gene20267 | 0.80141 | 9.12E-49 | -1.69E-46 |
| MS.gene050400 | MS.gene20267 | 0.802275 | 6.06E-49 | -1.69E-46 |
| MS.gene050444 | MS.gene20267 | 0.818219 | 2.20E-52 | -1.69E-46 |
| MS.gene050496 | MS.gene20267 | 0.823153 | 1.61E-53 | -1.69E-46 |
| MS.gene050502 | MS.gene20267 | 0.812289 | 4.57E-51 | -1.69E-46 |
| MS.gene050538 | MS.gene20267 | 0.810325 | 1.22E-50 | -1.69E-46 |
| MS.gene050553 | MS.gene20267 | 0.85209 | 5.80E-61 | -1.69E-46 |
| MS.gene050593 | MS.gene20267 | 0.867394 | 1.41E-65 | -1.69E-46 |
| MS.gene050670 | MS.gene20267 | 0.841953 | 3.47E-58 | -1.69E-46 |
| MS.gene050675 | MS.gene20267 | 0.80681 | 6.87E-50 | -1.69E-46 |
| MS.gene050747 | MS.gene20267 | 0.845692 | 3.47E-59 | -1.69E-46 |
| MS.gene050772 | MS.gene20267 | 0.854321 | 1.33E-61 | -1.69E-46 |
| MS.gene050809 | MS.gene20267 | -0.83214 | 1.12E-55 | -1.69E-46 |
| MS.gene05080 | MS.gene20267 | 0.869599 | 2.74E-66 | -1.69E-46 |
| MS.gene05081 | MS.gene20267 | 0.892477 | 1.53E-74 | -1.69E-46 |
| MS.gene050868 | MS.gene20267 | 0.865699 | 4.88E-65 | -1.69E-46 |
| MS.gene050871 | MS.gene20267 | 0.865387 | 6.13E-65 | -1.69E-46 |
| MS.gene050950 | MS.gene20267 | 0.843293 | 1.53E-58 | -1.69E-46 |
| MS.gene050971 | MS.gene20267 | 0.806208 | 9.20E-50 | -1.69E-46 |
| MS.gene05105 | MS.gene20267 | 0.831772 | 1.38E-55 | -1.69E-46 |
| MS.gene051268 | MS.gene20267 | 0.832686 | 8.21E-56 | -1.69E-46 |
| MS.gene051360 | MS.gene20267 | 0.816171 | 6.35E-52 | -1.69E-46 |
| MS.gene051387 | MS.gene20267 | 0.801259 | 9.80E-49 | -1.69E-46 |
| MS.gene051455 | MS.gene20267 | 0.81397 | 1.95E-51 | -1.69E-46 |
| MS.gene051521 | MS.gene20267 | 0.805349 | 1.39E-49 | -1.69E-46 |
| MS.gene051525 | MS.gene20267 | 0.818143 | 2.29E-52 | -1.69E-46 |
| MS.gene051552 | MS.gene20267 | -0.801647 | 8.16E-49 | -1.69E-46 |
| MS.gene051617 | MS.gene20267 | 0.83045 | 2.92E-55 | -1.69E-46 |
| MS.gene051666 | MS.gene20267 | 0.819887 | 9.17E-53 | -1.69E-46 |
| MS.gene051734 | MS.gene20267 | 0.862782 | 3.97E-64 | -1.69E-46 |
| MS.gene051838 | MS.gene20267 | 0.920477 | 1.22E-87 | -1.69E-46 |
| MS.gene051858 | MS.gene20267 | 0.826397 | 2.77E-54 | -1.69E-46 |
| MS.gene051874 | MS.gene20267 | 0.864366 | 1.28E-64 | -1.69E-46 |
| MS.gene051941 | MS.gene20267 | 0.832837 | 7.53E-56 | -1.69E-46 |
| MS.gene052134 | MS.gene20267 | 0.83143 | 1.68E-55 | -1.69E-46 |
| MS.gene052135 | MS.gene20267 | 0.81763 | 2.99E-52 | -1.69E-46 |
| MS.gene052136 | MS.gene20267 | 0.84747 | 1.13E-59 | -1.69E-46 |
| MS.gene052164 | MS.gene20267 | 0.827003 | 1.99E-54 | -1.69E-46 |
| MS.gene052346 | MS.gene20267 | 0.868364 | 6.90E-66 | -1.69E-46 |
| MS.gene052414 | MS.gene20267 | 0.870405 | 1.50E-66 | -1.69E-46 |
| MS.gene052421 | MS.gene20267 | 0.802336 | 5.89E-49 | -1.69E-46 |
| MS.gene052469 | MS.gene20267 | 0.829893 | 3.99E-55 | -1.69E-46 |
| MS.gene052481 | MS.gene20267 | 0.824431 | 8.10E-54 | -1.69E-46 |
| MS.gene052484 | MS.gene20267 | 0.836691 | 8.07E-57 | -1.69E-46 |
| MS.gene052501 | MS.gene20267 | 0.842938 | 1.90E-58 | -1.69E-46 |
| MS.gene052503 | MS.gene20267 | 0.855282 | 7.00E-62 | -1.69E-46 |
| MS.gene052505 | MS.gene20267 | 0.828213 | 1.02E-54 | -1.69E-46 |
| MS.gene052506 | MS.gene20267 | 0.837958 | 3.82E-57 | -1.69E-46 |
| MS.gene052615 | MS.gene20267 | 0.827682 | 1.37E-54 | -1.69E-46 |
| MS.gene052822 | MS.gene20267 | 0.840419 | 8.79E-58 | -1.69E-46 |
| MS.gene052823 | MS.gene20267 | 0.846409 | 2.21E-59 | -1.69E-46 |
| MS.gene052825 | MS.gene20267 | 0.851776 | 7.12E-61 | -1.69E-46 |
| MS.gene052870 | MS.gene20267 | 0.879127 | 1.61E-69 | -1.69E-46 |
| MS.gene052872 | MS.gene20267 | 0.880008 | 7.82E-70 | -1.69E-46 |
| MS.gene052966 | MS.gene20267 | 0.867011 | 1.87E-65 | -1.69E-46 |
| MS.gene052982 | MS.gene20267 | 0.829576 | 4.77E-55 | -1.69E-46 |
| MS.gene052999 | MS.gene20267 | 0.808008 | 3.82E-50 | -1.69E-46 |
| MS.gene053104 | MS.gene20267 | 0.821059 | 4.94E-53 | -1.69E-46 |
| MS.gene053203 | MS.gene20267 | 0.831154 | 1.96E-55 | -1.69E-46 |
| MS.gene053207 | MS.gene20267 | 0.835532 | 1.59E-56 | -1.69E-46 |
| MS.gene053213 | MS.gene20267 | 0.803708 | 3.06E-49 | -1.69E-46 |
| MS.gene053286 | MS.gene20267 | 0.800138 | 1.66E-48 | -1.69E-46 |
| MS.gene053318 | MS.gene20267 | 0.804036 | 2.62E-49 | -1.69E-46 |
| MS.gene053449 | MS.gene20267 | 0.894989 | 1.47E-75 | -1.69E-46 |
| MS.gene053479 | MS.gene20267 | 0.870461 | 1.43E-66 | -1.69E-46 |
| MS.gene053480 | MS.gene20267 | 0.816762 | 4.68E-52 | -1.69E-46 |
| MS.gene053574 | MS.gene20267 | 0.857667 | 1.40E-62 | -1.69E-46 |
| MS.gene053626 | MS.gene20267 | 0.804089 | 2.55E-49 | -1.69E-46 |
| MS.gene053632 | MS.gene20267 | 0.805671 | 1.19E-49 | -1.69E-46 |
| MS.gene053824 | MS.gene20267 | 0.901084 | 3.83E-78 | -1.69E-46 |
| MS.gene053912 | MS.gene20267 | 0.873749 | 1.15E-67 | -1.69E-46 |
| MS.gene053916 | MS.gene20267 | 0.833735 | 4.50E-56 | -1.69E-46 |
| MS.gene054003 | MS.gene20267 | 0.82713 | 1.85E-54 | -1.69E-46 |
| MS.gene054344 | MS.gene20267 | 0.812204 | 4.77E-51 | -1.69E-46 |
| MS.gene054408 | MS.gene20267 | 0.802427 | 5.64E-49 | -1.69E-46 |
| MS.gene054595 | MS.gene20267 | 0.818051 | 2.40E-52 | -1.69E-46 |
| MS.gene054600 | MS.gene20267 | 0.836748 | 7.80E-57 | -1.69E-46 |
| MS.gene054642 | MS.gene20267 | 0.802621 | 5.14E-49 | -1.69E-46 |
| MS.gene054706 | MS.gene20267 | -0.81107 | 8.41E-51 | -1.69E-46 |
| MS.gene05470 | MS.gene20267 | 0.802428 | 5.64E-49 | -1.69E-46 |
| MS.gene054884 | MS.gene20267 | -0.837552 | 4.86E-57 | -1.69E-46 |
| MS.gene054927 | MS.gene20267 | 0.81688 | 4.40E-52 | -1.69E-46 |
| MS.gene05494 | MS.gene20267 | 0.897579 | 1.23E-76 | -1.69E-46 |
| MS.gene05505 | MS.gene20267 | 0.827954 | 1.18E-54 | -1.69E-46 |
| MS.gene055206 | MS.gene20267 | 0.851249 | 1.00E-60 | -1.69E-46 |
| MS.gene055224 | MS.gene20267 | 0.866501 | 2.72E-65 | -1.69E-46 |
| MS.gene055289 | MS.gene20267 | 0.84539 | 4.18E-59 | -1.69E-46 |
| MS.gene055502 | MS.gene20267 | 0.826539 | 2.57E-54 | -1.69E-46 |
| MS.gene055539 | MS.gene20267 | 0.827211 | 1.77E-54 | -1.69E-46 |
| MS.gene05556 | MS.gene20267 | 0.808491 | 3.02E-50 | -1.69E-46 |
| MS.gene055577 | MS.gene20267 | 0.870123 | 1.85E-66 | -1.69E-46 |
| MS.gene055722 | MS.gene20267 | 0.853526 | 2.25E-61 | -1.69E-46 |
| MS.gene055741 | MS.gene20267 | 0.880856 | 3.89E-70 | -1.69E-46 |
| MS.gene055744 | MS.gene20267 | 0.879814 | 9.16E-70 | -1.69E-46 |
| MS.gene055748 | MS.gene20267 | 0.800914 | 1.15E-48 | -1.69E-46 |
| MS.gene05589 | MS.gene20267 | 0.864576 | 1.10E-64 | -1.69E-46 |
| MS.gene055909 | MS.gene20267 | 0.835455 | 1.66E-56 | -1.69E-46 |
| MS.gene055911 | MS.gene20267 | 0.831399 | 1.71E-55 | -1.69E-46 |
| MS.gene05592 | MS.gene20267 | 0.811359 | 7.28E-51 | -1.69E-46 |
| MS.gene055941 | MS.gene20267 | 0.865942 | 4.10E-65 | -1.69E-46 |
| MS.gene056166 | MS.gene20267 | 0.866743 | 2.28E-65 | -1.69E-46 |
| MS.gene056387 | MS.gene20267 | 0.873808 | 1.10E-67 | -1.69E-46 |
| MS.gene056422 | MS.gene20267 | 0.843682 | 1.21E-58 | -1.69E-46 |
| MS.gene056448 | MS.gene20267 | 0.82907 | 6.32E-55 | -1.69E-46 |
| MS.gene056504 | MS.gene20267 | 0.839423 | 1.60E-57 | -1.69E-46 |
| MS.gene056510 | MS.gene20267 | 0.818843 | 1.59E-52 | -1.69E-46 |
| MS.gene056511 | MS.gene20267 | 0.857115 | 2.03E-62 | -1.69E-46 |
| MS.gene05664 | MS.gene20267 | 0.836625 | 8.39E-57 | -1.69E-46 |
| MS.gene05666 | MS.gene20267 | 0.839013 | 2.04E-57 | -1.69E-46 |
| MS.gene056877 | MS.gene20267 | 0.847464 | 1.14E-59 | -1.69E-46 |
| MS.gene056897 | MS.gene20267 | 0.811324 | 7.41E-51 | -1.69E-46 |
| MS.gene056946 | MS.gene20267 | 0.832698 | 8.15E-56 | -1.69E-46 |
| MS.gene057019 | MS.gene20267 | 0.822051 | 2.91E-53 | -1.69E-46 |
| MS.gene057076 | MS.gene20267 | 0.886818 | 2.46E-72 | -1.69E-46 |
| MS.gene057086 | MS.gene20267 | 0.864403 | 1.25E-64 | -1.69E-46 |
| MS.gene057124 | MS.gene20267 | 0.847593 | 1.05E-59 | -1.69E-46 |
| MS.gene057289 | MS.gene20267 | 0.821891 | 3.17E-53 | -1.69E-46 |
| MS.gene057331 | MS.gene20267 | 0.837313 | 5.59E-57 | -1.69E-46 |
| MS.gene057332 | MS.gene20267 | 0.819327 | 1.23E-52 | -1.69E-46 |
| MS.gene057416 | MS.gene20267 | 0.811615 | 6.41E-51 | -1.69E-46 |
| MS.gene057658 | MS.gene20267 | 0.83922 | 1.81E-57 | -1.69E-46 |
| MS.gene057734 | MS.gene20267 | 0.884947 | 1.24E-71 | -1.69E-46 |
| MS.gene057856 | MS.gene20267 | 0.881725 | 1.89E-70 | -1.69E-46 |
| MS.gene057857 | MS.gene20267 | 0.86051 | 1.96E-63 | -1.69E-46 |
| MS.gene057926 | MS.gene20267 | 0.82684 | 2.17E-54 | -1.69E-46 |
| MS.gene058007 | MS.gene20267 | 0.820525 | 6.55E-53 | -1.69E-46 |
| MS.gene058120 | MS.gene20267 | 0.838195 | 3.32E-57 | -1.69E-46 |
| MS.gene058130 | MS.gene20267 | 0.823363 | 1.44E-53 | -1.69E-46 |
| MS.gene058157 | MS.gene20267 | 0.809488 | 1.85E-50 | -1.69E-46 |
| MS.gene058338 | MS.gene20267 | 0.836779 | 7.66E-57 | -1.69E-46 |
| MS.gene058376 | MS.gene20267 | 0.829403 | 5.25E-55 | -1.69E-46 |
| MS.gene05837 | MS.gene20267 | 0.854731 | 1.01E-61 | -1.69E-46 |
| MS.gene058418 | MS.gene20267 | -0.811892 | 5.58E-51 | -1.69E-46 |
| MS.gene058419 | MS.gene20267 | 0.81381 | 2.12E-51 | -1.69E-46 |
| MS.gene058444 | MS.gene20267 | 0.850775 | 1.37E-60 | -1.69E-46 |
| MS.gene058448 | MS.gene20267 | 0.840028 | 1.11E-57 | -1.69E-46 |
| MS.gene058544 | MS.gene20267 | 0.810102 | 1.36E-50 | -1.69E-46 |
| MS.gene058700 | MS.gene20267 | 0.84817 | 7.27E-60 | -1.69E-46 |
| MS.gene058773 | MS.gene20267 | 0.820569 | 6.40E-53 | -1.69E-46 |
| MS.gene058838 | MS.gene20267 | 0.877932 | 4.23E-69 | -1.69E-46 |
| MS.gene058948 | MS.gene20267 | 0.836872 | 7.26E-57 | -1.69E-46 |
| MS.gene059023 | MS.gene20267 | 0.865224 | 6.89E-65 | -1.69E-46 |
| MS.gene059129 | MS.gene20267 | 0.812639 | 3.83E-51 | -1.69E-46 |
| MS.gene05913 | MS.gene20267 | 0.848102 | 7.59E-60 | -1.69E-46 |
| MS.gene05926 | MS.gene20267 | -0.814272 | 1.68E-51 | -1.69E-46 |
| MS.gene059305 | MS.gene20267 | 0.842936 | 1.91E-58 | -1.69E-46 |
| MS.gene05934 | MS.gene20267 | 0.823212 | 1.56E-53 | -1.69E-46 |
| MS.gene059455 | MS.gene20267 | 0.835533 | 1.59E-56 | -1.69E-46 |
| MS.gene059667 | MS.gene20267 | 0.846875 | 1.65E-59 | -1.69E-46 |
| MS.gene059674 | MS.gene20267 | 0.834352 | 3.15E-56 | -1.69E-46 |
| MS.gene059688 | MS.gene20267 | 0.800027 | 1.75E-48 | -1.69E-46 |
| MS.gene059699 | MS.gene20267 | -0.80134 | 9.43E-49 | -1.69E-46 |
| MS.gene059703 | MS.gene20267 | -0.800653 | 1.30E-48 | -1.69E-46 |
| MS.gene059711 | MS.gene20267 | 0.803464 | 3.44E-49 | -1.69E-46 |
| MS.gene059717 | MS.gene20267 | 0.811488 | 6.83E-51 | -1.69E-46 |
| MS.gene059718 | MS.gene20267 | 0.827787 | 1.29E-54 | -1.69E-46 |
| MS.gene059801 | MS.gene20267 | 0.804694 | 1.91E-49 | -1.69E-46 |
| MS.gene059807 | MS.gene20267 | 0.818307 | 2.10E-52 | -1.69E-46 |
| MS.gene059865 | MS.gene20267 | 0.833754 | 4.45E-56 | -1.69E-46 |
| MS.gene059902 | MS.gene20267 | 0.81674 | 4.73E-52 | -1.69E-46 |
| MS.gene06000 | MS.gene20267 | 0.838496 | 2.78E-57 | -1.69E-46 |
| MS.gene06027 | MS.gene20267 | 0.828299 | 9.71E-55 | -1.69E-46 |
| MS.gene060372 | MS.gene20267 | 0.836063 | 1.17E-56 | -1.69E-46 |
| MS.gene060403 | MS.gene20267 | 0.809157 | 2.17E-50 | -1.69E-46 |
| MS.gene060482 | MS.gene20267 | 0.807545 | 4.80E-50 | -1.69E-46 |
| MS.gene060762 | MS.gene20267 | 0.847274 | 1.28E-59 | -1.69E-46 |
| MS.gene060778 | MS.gene20267 | 0.81569 | 8.12E-52 | -1.69E-46 |
| MS.gene060804 | MS.gene20267 | 0.821597 | 3.71E-53 | -1.69E-46 |
| MS.gene060818 | MS.gene20267 | 0.817927 | 2.56E-52 | -1.69E-46 |
| MS.gene060832 | MS.gene20267 | 0.823536 | 1.31E-53 | -1.69E-46 |
| MS.gene060835 | MS.gene20267 | 0.870036 | 1.98E-66 | -1.69E-46 |
| MS.gene060837 | MS.gene20267 | 0.885018 | 1.17E-71 | -1.69E-46 |
| MS.gene06092 | MS.gene20267 | 0.839155 | 1.88E-57 | -1.69E-46 |
| MS.gene06097 | MS.gene20267 | 0.839344 | 1.68E-57 | -1.69E-46 |
| MS.gene060982 | MS.gene20267 | 0.854648 | 1.07E-61 | -1.69E-46 |
| MS.gene061154 | MS.gene20267 | 0.836315 | 1.01E-56 | -1.69E-46 |
| MS.gene061231 | MS.gene20267 | 0.810624 | 1.05E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene20267.t1 | MTR_5g016100 | 99.359 | 312 | 2 | 0 | 1 | 312 | 1 | 312 | 0.0 | 637 |
| MS.gene20267.t1 | MTR_5g016100 | 100.000 | 225 | 0 | 0 | 88 | 312 | 1 | 225 | 1.17e-164 | 457 |
| MS.gene20267.t1 | MTR_1g016360 | 47.205 | 161 | 84 | 1 | 66 | 225 | 50 | 210 | 2.77e-43 | 149 |
| MS.gene20267.t1 | MTR_1g016360 | 44.853 | 136 | 74 | 1 | 66 | 200 | 50 | 185 | 7.87e-34 | 123 |
| MS.gene20267.t1 | MTR_1g016360 | 39.496 | 119 | 71 | 1 | 66 | 183 | 50 | 168 | 8.52e-23 | 94.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene20267.t1 | AT5G67370 | 67.278 | 327 | 92 | 3 | 1 | 312 | 1 | 327 | 4.92e-147 | 416 |
| MS.gene20267.t1 | AT5G11840 | 39.370 | 254 | 139 | 7 | 12 | 262 | 11 | 252 | 1.59e-46 | 158 |
| MS.gene20267.t1 | AT5G11840 | 42.079 | 202 | 105 | 5 | 12 | 210 | 11 | 203 | 1.02e-40 | 141 |
| MS.gene20267.t1 | AT5G11840 | 43.684 | 190 | 95 | 5 | 12 | 198 | 11 | 191 | 7.35e-40 | 139 |
| MS.gene20267.t1 | AT5G11840 | 39.655 | 174 | 93 | 5 | 12 | 182 | 11 | 175 | 3.25e-29 | 111 |
Find 78 sgRNAs with CRISPR-Local
Find 183 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATTAAAGTTAAGGCCATAAA+AGG | 0.256213 | 5.1:+8407552 | MS.gene20267:CDS |
| GATTGTCTTGAGGATATATC+TGG | 0.307364 | 5.1:+8408503 | MS.gene20267:CDS |
| AACGAACCATGGTTGCTTCC+CGG | 0.333037 | 5.1:-8407483 | None:intergenic |
| GCTGTATTCATGGGGAGAAC+TGG | 0.347057 | 5.1:+8408119 | MS.gene20267:CDS |
| CTAAAGCTTGCAGCTGCAAT+TGG | 0.364895 | 5.1:-8408207 | None:intergenic |
| AAATTCGCACTTACTCTAGA+AGG | 0.375714 | 5.1:-8408231 | None:intergenic |
| GGAGAAACAAGTGGATCTTC+AGG | 0.375718 | 5.1:+8407585 | MS.gene20267:CDS |
| TGCTTCAGCAATTTAACAAC+TGG | 0.384909 | 5.1:-8409512 | None:intergenic |
| ACGGGTTTCCATTAAAGTTA+AGG | 0.392385 | 5.1:+8407542 | MS.gene20267:CDS |
| TACCATCCACTTTCTTCATA+AGG | 0.394550 | 5.1:-8408846 | None:intergenic |
| GATCCTCCCATTTGCAGTAC+TGG | 0.400519 | 5.1:-8409894 | None:intergenic |
| CATACCGGTCTTTGCTCAAA+AGG | 0.406196 | 5.1:-8407642 | None:intergenic |
| GGGTCGTTCTTTCTTCGCCT+TGG | 0.406243 | 5.1:+8408147 | MS.gene20267:CDS |
| TCATGGGGAGAACTGGGTCC+AGG | 0.410922 | 5.1:+8408126 | MS.gene20267:CDS |
| GTGGATCTTCAGGAGGTAGC+TGG | 0.417633 | 5.1:+8407595 | MS.gene20267:CDS |
| TTGCTGAAGCAAACTCTAGT+TGG | 0.417913 | 5.1:+8409524 | MS.gene20267:CDS |
| TCTTGCAGCTGCTGCTGCTG+AGG | 0.421207 | 5.1:+8409813 | MS.gene20267:CDS |
| AACTGCAAGACAAACTAAAC+CGG | 0.436110 | 5.1:+8407464 | MS.gene20267:CDS |
| GCTGCTGCTGAGGCTGCAGA+TGG | 0.438479 | 5.1:+8409823 | MS.gene20267:CDS |
| CAGGAGGCCAGTACTGCAAA+TGG | 0.438936 | 5.1:+8409887 | MS.gene20267:CDS |
| TTCTTCGCCTTGGAGGTCTC+TGG | 0.439796 | 5.1:+8408157 | MS.gene20267:CDS |
| TTTATACTAGCTGCTGGAAC+AGG | 0.441314 | 5.1:+8408459 | MS.gene20267:CDS |
| TTGTACTTTGTGTTGACCTT+GGG | 0.445992 | 5.1:-8409659 | None:intergenic |
| CCTAGCTCGTGATAGATTGT+TGG | 0.448412 | 5.1:+8409345 | MS.gene20267:CDS |
| CTAGCTCGTGATAGATTGTT+GGG | 0.458803 | 5.1:+8409346 | MS.gene20267:CDS |
| GGGACTTCAATTTCCAATCC+AGG | 0.460451 | 5.1:-8407621 | None:intergenic |
| GGTTTAGTTTGTCTTGCAGT+TGG | 0.461505 | 5.1:-8407462 | None:intergenic |
| TCAGGAGGTAGCTGGGATCC+TGG | 0.464576 | 5.1:+8407603 | MS.gene20267:CDS |
| TTGGCAGTGTTCACAGTGCT+TGG | 0.468253 | 5.1:+8408180 | MS.gene20267:CDS |
| AGGATGGAATGCTGTATTCA+TGG | 0.479665 | 5.1:+8408109 | MS.gene20267:CDS |
| TAGATTGTTGGGCTCTTACA+AGG | 0.485638 | 5.1:+8409357 | MS.gene20267:CDS |
| AACCTATCTCTACAGTATAC+TGG | 0.487242 | 5.1:-8409850 | None:intergenic |
| ACTGGAGCATTGCTTGTCAC+TGG | 0.490569 | 5.1:+8409548 | MS.gene20267:CDS |
| TGCTGAAGCAAACTCTAGTT+GGG | 0.491191 | 5.1:+8409525 | MS.gene20267:CDS |
| TCGTTCTTTCTTCGCCTTGG+AGG | 0.501822 | 5.1:+8408150 | MS.gene20267:CDS |
| GTTGTACTTTGTGTTGACCT+TGG | 0.506897 | 5.1:-8409660 | None:intergenic |
| CTGTATTCATGGGGAGAACT+GGG | 0.507278 | 5.1:+8408120 | MS.gene20267:CDS |
| GTCATTCCTTATGAAGAAAG+TGG | 0.511705 | 5.1:+8408840 | MS.gene20267:CDS |
| TCGTCCGCTTTCACATCTGC+AGG | 0.511726 | 5.1:-8409787 | None:intergenic |
| GCCATAAAAGGTGAGATGAA+TGG | 0.514026 | 5.1:+8407564 | MS.gene20267:CDS |
| CTGAGATTTATACTAGCTGC+TGG | 0.524640 | 5.1:+8408453 | MS.gene20267:CDS |
| AAATGAGTACTCATCTTTGA+AGG | 0.527068 | 5.1:+8408089 | MS.gene20267:CDS |
| AAGCAAACTCTAGTTGGGAC+TGG | 0.534146 | 5.1:+8409530 | MS.gene20267:CDS |
| GACCAGTATACTGTAGAGAT+AGG | 0.539279 | 5.1:+8409848 | MS.gene20267:CDS |
| AGGTAGCTGGGATCCTGGAT+TGG | 0.543722 | 5.1:+8407608 | MS.gene20267:CDS |
| TGGATCTTCAGGAGGTAGCT+GGG | 0.548745 | 5.1:+8407596 | MS.gene20267:CDS |
| TTGTGTCTTTGATTGTCTTG+AGG | 0.548909 | 5.1:+8408493 | MS.gene20267:CDS |
| GAGTACTCATCTTTGAAGGA+TGG | 0.549927 | 5.1:+8408093 | MS.gene20267:CDS |
| GTTGACCTTGGGAACTTGAA+CGG | 0.554757 | 5.1:-8409648 | None:intergenic |
| ATACCGGTCTTTGCTCAAAA+GGG | 0.558808 | 5.1:-8407641 | None:intergenic |
| AGGAGGCCAGTACTGCAAAT+GGG | 0.560894 | 5.1:+8409888 | MS.gene20267:CDS |
| GAATGAAGAAAATTCTCCAC+TGG | 0.565797 | 5.1:-8409596 | None:intergenic |
| CCAACAATCTATCACGAGCT+AGG | 0.567433 | 5.1:-8409345 | None:intergenic |
| ATTTATCTTTGCTACACCAG+TGG | 0.569868 | 5.1:+8409580 | MS.gene20267:CDS |
| TCGCCTTGGAGGTCTCTGGT+TGG | 0.574053 | 5.1:+8408161 | MS.gene20267:CDS |
| GAAGAAAGTGGATGGTATGA+CGG | 0.576103 | 5.1:+8408852 | MS.gene20267:CDS |
| TCAACACAAAGTACAACCTA+AGG | 0.579328 | 5.1:+8409666 | MS.gene20267:CDS |
| GGATGGAATGCTGTATTCAT+GGG | 0.587098 | 5.1:+8408110 | MS.gene20267:CDS |
| CATGGGGAGAACTGGGTCCA+GGG | 0.587436 | 5.1:+8408127 | MS.gene20267:CDS |
| ATCAACCGTTCAAGTTCCCA+AGG | 0.607453 | 5.1:+8409643 | MS.gene20267:CDS |
| TTCCTTATGAAGAAAGTGGA+TGG | 0.609524 | 5.1:+8408844 | MS.gene20267:CDS |
| ATGCAGGGGTGGAGTTATGT+TGG | 0.613989 | 5.1:+8408798 | MS.gene20267:intron |
| AGGCGAAGAAAGAACGACCC+TGG | 0.620568 | 5.1:-8408144 | None:intergenic |
| ACTAAACCGGGAAGCAACCA+TGG | 0.621555 | 5.1:+8407477 | MS.gene20267:CDS |
| TAATGTGTACTGTAGAAAGG+AGG | 0.641199 | 5.1:+8409750 | MS.gene20267:intron |
| TTTGGATGATGAACGAACCA+TGG | 0.644971 | 5.1:-8407494 | None:intergenic |
| ACTGCAAGACAAACTAAACC+GGG | 0.646464 | 5.1:+8407465 | MS.gene20267:CDS |
| ATTGCCTGCAGATGTGAAAG+CGG | 0.647332 | 5.1:+8409783 | MS.gene20267:CDS |
| GATGTGGGTCAAGCCGCCCG+AGG | 0.654400 | 5.1:+8408878 | MS.gene20267:CDS |
| ATGGTATGACGGACAGATGT+GGG | 0.654790 | 5.1:+8408863 | MS.gene20267:CDS |
| GAGATGAATGGAGAAACAAG+TGG | 0.659434 | 5.1:+8407576 | MS.gene20267:CDS |
| CTGCCAACCAGAGACCTCCA+AGG | 0.677013 | 5.1:-8408164 | None:intergenic |
| AGGCCAGTACTGCAAATGGG+AGG | 0.682389 | 5.1:+8409891 | MS.gene20267:CDS |
| GTTAAGAGAGTAACCTCGGG+CGG | 0.682446 | 5.1:-8408891 | None:intergenic |
| GATGGTATGACGGACAGATG+TGG | 0.687282 | 5.1:+8408862 | MS.gene20267:CDS |
| GATGGAATGCTGTATTCATG+GGG | 0.687693 | 5.1:+8408111 | MS.gene20267:CDS |
| GAAACAAGTGGATCTTCAGG+AGG | 0.690118 | 5.1:+8407588 | MS.gene20267:CDS |
| GCAGCTAGTATAAATCTCAG+AGG | 0.718109 | 5.1:-8408450 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATGAGAAAAAATCAAAATAT+TGG | + | chr5.1:8407852-8407871 | MS.gene20267:intron | 15.0% |
| !! | ATTAAAAGTTTCAATGATAT+GGG | - | chr5.1:8409734-8409753 | None:intergenic | 15.0% |
| !!! | GCATACATTTTTTTTTTTTT+TGG | - | chr5.1:8408323-8408342 | None:intergenic | 15.0% |
| !!! | TATAAGAAACATTTTTTAGT+GGG | - | chr5.1:8408028-8408047 | None:intergenic | 15.0% |
| !!! | TTATAAGAAACATTTTTTAG+TGG | - | chr5.1:8408029-8408048 | None:intergenic | 15.0% |
| !! | AAAACTGGTTAAGAAATTAA+CGG | + | chr5.1:8408768-8408787 | MS.gene20267:intron | 20.0% |
| !! | AAATAAACTTTGATATTGCA+TGG | + | chr5.1:8407727-8407746 | MS.gene20267:intron | 20.0% |
| !! | AAGTATATGTGTATAATGAT+TGG | + | chr5.1:8408256-8408275 | MS.gene20267:intron | 20.0% |
| !! | AGTATATGTGTATAATGATT+GGG | + | chr5.1:8408257-8408276 | MS.gene20267:intron | 20.0% |
| !! | ATATTAGAGTATGTATTTCA+TGG | + | chr5.1:8407885-8407904 | MS.gene20267:intron | 20.0% |
| !! | ATGCAATATCAAAGTTTATT+TGG | - | chr5.1:8407728-8407747 | None:intergenic | 20.0% |
| !! | CATTAAAAGTTTCAATGATA+TGG | - | chr5.1:8409735-8409754 | None:intergenic | 20.0% |
| !! | TTAAAAGTTTCAATGATATG+GGG | - | chr5.1:8409733-8409752 | None:intergenic | 20.0% |
| !!! | CTTACAATTTTAAAGACAAA+AGG | - | chr5.1:8409150-8409169 | None:intergenic | 20.0% |
| !!! | GCTTCATTTCTTTAATTTTT+TGG | + | chr5.1:8409288-8409307 | MS.gene20267:intron | 20.0% |
| !!! | TAAAAGAAAGTATCAGAAAA+AGG | + | chr5.1:8407828-8407847 | MS.gene20267:intron | 20.0% |
| !!! | TTTTTACTTTTAGGTAAAAG+AGG | - | chr5.1:8408932-8408951 | None:intergenic | 20.0% |
| ! | AAAAAGAACAGAGATAGAAA+GGG | + | chr5.1:8407783-8407802 | MS.gene20267:intron | 25.0% |
| ! | AAACTGGTTAAGAAATTAAC+GGG | + | chr5.1:8408769-8408788 | MS.gene20267:intron | 25.0% |
| ! | ACTCATTAAGCTGAATAATT+AGG | + | chr5.1:8409412-8409431 | MS.gene20267:intron | 25.0% |
| ! | ATCCCAATCATTTCATTATT+GGG | + | chr5.1:8408555-8408574 | MS.gene20267:intron | 25.0% |
| ! | ATTAAAGTTAAGGCCATAAA+AGG | + | chr5.1:8407552-8407571 | MS.gene20267:CDS | 25.0% |
| ! | TAAAAAGAACAGAGATAGAA+AGG | + | chr5.1:8407782-8407801 | MS.gene20267:intron | 25.0% |
| ! | TAAAAGTTTCAATGATATGG+GGG | - | chr5.1:8409732-8409751 | None:intergenic | 25.0% |
| ! | TATAACATTTCATGCTAACT+TGG | + | chr5.1:8408044-8408063 | MS.gene20267:intron | 25.0% |
| ! | TTTATTGCATTTAACCTAGT+GGG | + | chr5.1:8408649-8408668 | MS.gene20267:intron | 25.0% |
| !! | TTTTAATGTGTACTGTAGAA+AGG | + | chr5.1:8409747-8409766 | MS.gene20267:intron | 25.0% |
| !!! | GGACTTTTGTTTTTACTTTT+AGG | - | chr5.1:8408941-8408960 | None:intergenic | 25.0% |
| !!! | GTCTTTAAAATTGTAAGAGA+TGG | + | chr5.1:8409153-8409172 | MS.gene20267:intron | 25.0% |
| !!! | TTTTATGGCCTTAACTTTAA+TGG | - | chr5.1:8407553-8407572 | None:intergenic | 25.0% |
| AAATGAGTACTCATCTTTGA+AGG | + | chr5.1:8408089-8408108 | MS.gene20267:CDS | 30.0% | |
| AACCTATTGTTTATTCTCTC+TGG | - | chr5.1:8409123-8409142 | None:intergenic | 30.0% | |
| ACAAGCAGTCTATTCAAAAT+TGG | + | chr5.1:8409190-8409209 | MS.gene20267:intron | 30.0% | |
| ATCCCCAATAATGAAATGAT+TGG | - | chr5.1:8408561-8408580 | None:intergenic | 30.0% | |
| ATTCAAGGTGTAGATTTACT+GGG | + | chr5.1:8408990-8409009 | MS.gene20267:intron | 30.0% | |
| ATTTCATTATTGGGGATCAT+GGG | + | chr5.1:8408564-8408583 | MS.gene20267:intron | 30.0% | |
| CATCCCAATCATTTCATTAT+TGG | + | chr5.1:8408554-8408573 | MS.gene20267:intron | 30.0% | |
| CTTTATTGCATTTAACCTAG+TGG | + | chr5.1:8408648-8408667 | MS.gene20267:intron | 30.0% | |
| GAGAGAATAAACAATAGGTT+AGG | + | chr5.1:8409123-8409142 | MS.gene20267:intron | 30.0% | |
| GTAAATCTACACCTTGAATA+TGG | - | chr5.1:8408989-8409008 | None:intergenic | 30.0% | |
| TACTCGACAAAATCAATTAC+TGG | + | chr5.1:8409034-8409053 | MS.gene20267:intron | 30.0% | |
| TATTCAAGGTGTAGATTTAC+TGG | + | chr5.1:8408989-8409008 | MS.gene20267:intron | 30.0% | |
| TCCCAATCATTTCATTATTG+GGG | + | chr5.1:8408556-8408575 | MS.gene20267:intron | 30.0% | |
| TCCCCAATAATGAAATGATT+GGG | - | chr5.1:8408560-8408579 | None:intergenic | 30.0% | |
| TTAGATAAAGACAAGACCAT+TGG | + | chr5.1:8409062-8409081 | MS.gene20267:intron | 30.0% | |
| TTGATATTGCATGGTGTAAT+AGG | + | chr5.1:8407736-8407755 | MS.gene20267:intron | 30.0% | |
| ! | AGCTTCAAAATTTTCTCAAC+GGG | + | chr5.1:8407524-8407543 | MS.gene20267:CDS | 30.0% |
| ! | ATTTAACAACTGGTTTAACC+TGG | - | chr5.1:8409505-8409524 | None:intergenic | 30.0% |
| ! | GAGCTTCAAAATTTTCTCAA+CGG | + | chr5.1:8407523-8407542 | MS.gene20267:CDS | 30.0% |
| !! | GGTTGATTTATTTTCTTCTG+TGG | - | chr5.1:8409630-8409649 | None:intergenic | 30.0% |
| !!! | ATCTTGTTTTTCCTTACCTT+AGG | - | chr5.1:8409685-8409704 | None:intergenic | 30.0% |
| !!! | ATTTTGAAGCTCTTGGATTT+TGG | - | chr5.1:8407515-8407534 | None:intergenic | 30.0% |
| !!! | TGAGAAAATTTTGAAGCTCT+TGG | - | chr5.1:8407522-8407541 | None:intergenic | 30.0% |
| AAAGAAATGAAGCATGTTGC+TGG | - | chr5.1:8409281-8409300 | None:intergenic | 35.0% | |
| AAAGACAAGACCATTGGTAA+AGG | + | chr5.1:8409068-8409087 | MS.gene20267:intron | 35.0% | |
| AAATTCGCACTTACTCTAGA+AGG | - | chr5.1:8408234-8408253 | None:intergenic | 35.0% | |
| AACCTATCTCTACAGTATAC+TGG | - | chr5.1:8409853-8409872 | None:intergenic | 35.0% | |
| AACTGCAAGACAAACTAAAC+CGG | + | chr5.1:8407464-8407483 | MS.gene20267:CDS | 35.0% | |
| AAGCTGAATAATTAGGATGC+AGG | + | chr5.1:8409419-8409438 | MS.gene20267:intron | 35.0% | |
| ACAAAGTACAACCTAAGGTA+AGG | + | chr5.1:8409671-8409690 | MS.gene20267:intron | 35.0% | |
| ACGGGTTTCCATTAAAGTTA+AGG | + | chr5.1:8407542-8407561 | MS.gene20267:CDS | 35.0% | |
| AGAAAGGGAGGATAAAAATG+AGG | + | chr5.1:8407798-8407817 | MS.gene20267:intron | 35.0% | |
| AGCTGAATAATTAGGATGCA+GGG | + | chr5.1:8409420-8409439 | MS.gene20267:intron | 35.0% | |
| AGTACTCCTGAAGATATTGT+AGG | - | chr5.1:8409708-8409727 | None:intergenic | 35.0% | |
| ATTTATCTTTGCTACACCAG+TGG | + | chr5.1:8409580-8409599 | MS.gene20267:CDS | 35.0% | |
| CAAGATCCTACAATATCTTC+AGG | + | chr5.1:8409699-8409718 | MS.gene20267:intron | 35.0% | |
| CACACACATACAAACTGAAA+CGG | + | chr5.1:8407958-8407977 | MS.gene20267:intron | 35.0% | |
| CATTTCATTATTGGGGATCA+TGG | + | chr5.1:8408563-8408582 | MS.gene20267:intron | 35.0% | |
| GAATGAAGAAAATTCTCCAC+TGG | - | chr5.1:8409599-8409618 | None:intergenic | 35.0% | |
| GATTGTCTTGAGGATATATC+TGG | + | chr5.1:8408503-8408522 | MS.gene20267:CDS | 35.0% | |
| GCTGTTCACAAGTAAAAAAC+TGG | + | chr5.1:8408753-8408772 | MS.gene20267:intron | 35.0% | |
| GGAATATGTCATGGTCTAAT+AGG | + | chr5.1:8408065-8408084 | MS.gene20267:intron | 35.0% | |
| GTAGTTGTCTACATACATAC+CGG | - | chr5.1:8407660-8407679 | None:intergenic | 35.0% | |
| GTCATTCCTTATGAAGAAAG+TGG | + | chr5.1:8408840-8408859 | MS.gene20267:CDS | 35.0% | |
| GTCCAGAGAGAATAAACAAT+AGG | + | chr5.1:8409118-8409137 | MS.gene20267:intron | 35.0% | |
| GTGTAATAGGATATTCCCTT+TGG | + | chr5.1:8407749-8407768 | MS.gene20267:intron | 35.0% | |
| TAATGTGTACTGTAGAAAGG+AGG | + | chr5.1:8409750-8409769 | MS.gene20267:intron | 35.0% | |
| TACCATCCACTTTCTTCATA+AGG | - | chr5.1:8408849-8408868 | None:intergenic | 35.0% | |
| TAGGATCTGCAAAGAGAAAT+AGG | - | chr5.1:8409329-8409348 | None:intergenic | 35.0% | |
| TCAACACAAAGTACAACCTA+AGG | + | chr5.1:8409666-8409685 | MS.gene20267:CDS | 35.0% | |
| TGCTAACTTGGAATATGTCA+TGG | + | chr5.1:8408056-8408075 | MS.gene20267:intron | 35.0% | |
| TGCTTCAGCAATTTAACAAC+TGG | - | chr5.1:8409515-8409534 | None:intergenic | 35.0% | |
| TTCCTTATGAAGAAAGTGGA+TGG | + | chr5.1:8408844-8408863 | MS.gene20267:CDS | 35.0% | |
| TTGTGTCTTTGATTGTCTTG+AGG | + | chr5.1:8408493-8408512 | MS.gene20267:CDS | 35.0% | |
| TTTCATTATTGGGGATCATG+GGG | + | chr5.1:8408565-8408584 | MS.gene20267:intron | 35.0% | |
| ! | TCCATTCATCTCACCTTTTA+TGG | - | chr5.1:8407568-8407587 | None:intergenic | 35.0% |
| ! | TTGTACTTTGTGTTGACCTT+GGG | - | chr5.1:8409662-8409681 | None:intergenic | 35.0% |
| ! | TTTTAACCTCTCAGTCCAAA+GGG | - | chr5.1:8407767-8407786 | None:intergenic | 35.0% |
| ! | TTTTTAACCTCTCAGTCCAA+AGG | - | chr5.1:8407768-8407787 | None:intergenic | 35.0% |
| !! | CTCAAATTAGCCTTTACCAA+TGG | - | chr5.1:8409081-8409100 | None:intergenic | 35.0% |
| AAATCTCAGAGGTTCCTGTA+AGG | - | chr5.1:8408442-8408461 | None:intergenic | 40.0% | |
| AAGAACAGAGATAGAAAGGG+AGG | + | chr5.1:8407786-8407805 | MS.gene20267:intron | 40.0% | |
| AAGGGAGGATAAAAATGAGG+AGG | + | chr5.1:8407801-8407820 | MS.gene20267:intron | 40.0% | |
| AATTAACGGGATCACAATGC+AGG | + | chr5.1:8408782-8408801 | MS.gene20267:intron | 40.0% | |
| ACTGCAAGACAAACTAAACC+GGG | + | chr5.1:8407465-8407484 | MS.gene20267:CDS | 40.0% | |
| AGACATTAGACACCACATTC+TGG | - | chr5.1:8408712-8408731 | None:intergenic | 40.0% | |
| AGAGTTAAGAGAGTAACCTC+GGG | - | chr5.1:8408897-8408916 | None:intergenic | 40.0% | |
| AGGATGGAATGCTGTATTCA+TGG | + | chr5.1:8408109-8408128 | MS.gene20267:CDS | 40.0% | |
| ATACCGGTCTTTGCTCAAAA+GGG | - | chr5.1:8407644-8407663 | None:intergenic | 40.0% | |
| ATTAACGGGATCACAATGCA+GGG | + | chr5.1:8408783-8408802 | MS.gene20267:intron | 40.0% | |
| CACATATATTCCTTGTCTCC+AGG | + | chr5.1:8409484-8409503 | MS.gene20267:intron | 40.0% | |
| CTAACTGTCATGCTTTCTGA+TGG | - | chr5.1:8407921-8407940 | None:intergenic | 40.0% | |
| CTAGCTCGTGATAGATTGTT+GGG | + | chr5.1:8409346-8409365 | MS.gene20267:CDS | 40.0% | |
| CTGAGATTTATACTAGCTGC+TGG | + | chr5.1:8408453-8408472 | MS.gene20267:CDS | 40.0% | |
| GAAGAAAGTGGATGGTATGA+CGG | + | chr5.1:8408852-8408871 | MS.gene20267:CDS | 40.0% | |
| GACCAGTATACTGTAGAGAT+AGG | + | chr5.1:8409848-8409867 | MS.gene20267:CDS | 40.0% | |
| GAGAGTTAAGAGAGTAACCT+CGG | - | chr5.1:8408898-8408917 | None:intergenic | 40.0% | |
| GAGATGAATGGAGAAACAAG+TGG | + | chr5.1:8407576-8407595 | MS.gene20267:CDS | 40.0% | |
| GAGTGTTTGTGACTACAGAA+GGG | - | chr5.1:8408679-8408698 | None:intergenic | 40.0% | |
| GATGGAATGCTGTATTCATG+GGG | + | chr5.1:8408111-8408130 | MS.gene20267:CDS | 40.0% | |
| GCAGCTAGTATAAATCTCAG+AGG | - | chr5.1:8408453-8408472 | None:intergenic | 40.0% | |
| GCCATAAAAGGTGAGATGAA+TGG | + | chr5.1:8407564-8407583 | MS.gene20267:CDS | 40.0% | |
| GGATGGAATGCTGTATTCAT+GGG | + | chr5.1:8408110-8408129 | MS.gene20267:CDS | 40.0% | |
| GGGATGTGAACATGAAAAAG+AGG | - | chr5.1:8408540-8408559 | None:intergenic | 40.0% | |
| TAGATTGTTGGGCTCTTACA+AGG | + | chr5.1:8409357-8409376 | MS.gene20267:CDS | 40.0% | |
| TCAGTTTGTATGTGTGTGCA+GGG | - | chr5.1:8407956-8407975 | None:intergenic | 40.0% | |
| TCTATGTTGTTGCCAGAATG+TGG | + | chr5.1:8408697-8408716 | MS.gene20267:intron | 40.0% | |
| TGCTGAAGCAAACTCTAGTT+GGG | + | chr5.1:8409525-8409544 | MS.gene20267:CDS | 40.0% | |
| TTCAGTTTGTATGTGTGTGC+AGG | - | chr5.1:8407957-8407976 | None:intergenic | 40.0% | |
| TTGCTGAAGCAAACTCTAGT+TGG | + | chr5.1:8409524-8409543 | MS.gene20267:CDS | 40.0% | |
| TTTACTGGGACATAGCAAGT+AGG | + | chr5.1:8409004-8409023 | MS.gene20267:intron | 40.0% | |
| TTTATACTAGCTGCTGGAAC+AGG | + | chr5.1:8408459-8408478 | MS.gene20267:CDS | 40.0% | |
| TTTGGATGATGAACGAACCA+TGG | - | chr5.1:8407497-8407516 | None:intergenic | 40.0% | |
| ! | AGAGTGTTTGTGACTACAGA+AGG | - | chr5.1:8408680-8408699 | None:intergenic | 40.0% |
| ! | CTGTGTTGATGTTACCTTAC+AGG | + | chr5.1:8408425-8408444 | MS.gene20267:intron | 40.0% |
| ! | GAGTACTCATCTTTGAAGGA+TGG | + | chr5.1:8408093-8408112 | MS.gene20267:CDS | 40.0% |
| ! | GTTGTACTTTGTGTTGACCT+TGG | - | chr5.1:8409663-8409682 | None:intergenic | 40.0% |
| ! | TTTTATCGAGCATTAGCAGG+AGG | + | chr5.1:8409871-8409890 | MS.gene20267:CDS | 40.0% |
| !! | AGGTTTTATCGAGCATTAGC+AGG | + | chr5.1:8409868-8409887 | MS.gene20267:CDS | 40.0% |
| !! | GGTTTAGTTTGTCTTGCAGT+TGG | - | chr5.1:8407465-8407484 | None:intergenic | 40.0% |
| AAGCAAACTCTAGTTGGGAC+TGG | + | chr5.1:8409530-8409549 | MS.gene20267:CDS | 45.0% | |
| ATTGCCTGCAGATGTGAAAG+CGG | + | chr5.1:8409783-8409802 | MS.gene20267:CDS | 45.0% | |
| CATACCGGTCTTTGCTCAAA+AGG | - | chr5.1:8407645-8407664 | None:intergenic | 45.0% | |
| CCAACAATCTATCACGAGCT+AGG | - | chr5.1:8409348-8409367 | None:intergenic | 45.0% | |
| CCTAGCTCGTGATAGATTGT+TGG | + | chr5.1:8409345-8409364 | MS.gene20267:CDS | 45.0% | |
| CCTGCGCAAAACCATATTCA+AGG | + | chr5.1:8408975-8408994 | MS.gene20267:intron | 45.0% | |
| CTAAAGCTTGCAGCTGCAAT+TGG | - | chr5.1:8408210-8408229 | None:intergenic | 45.0% | |
| CTGTATTCATGGGGAGAACT+GGG | + | chr5.1:8408120-8408139 | MS.gene20267:CDS | 45.0% | |
| GAAACAAGTGGATCTTCAGG+AGG | + | chr5.1:8407588-8407607 | MS.gene20267:CDS | 45.0% | |
| GATATTCCCTTTGGACTGAG+AGG | + | chr5.1:8407758-8407777 | MS.gene20267:intron | 45.0% | |
| GGAGAAACAAGTGGATCTTC+AGG | + | chr5.1:8407585-8407604 | MS.gene20267:CDS | 45.0% | |
| GGGACTTCAATTTCCAATCC+AGG | - | chr5.1:8407624-8407643 | None:intergenic | 45.0% | |
| GTTGACCTTGGGAACTTGAA+CGG | - | chr5.1:8409651-8409670 | None:intergenic | 45.0% | |
| TGTCATGCTTTCTGATGGCT+TGG | - | chr5.1:8407916-8407935 | None:intergenic | 45.0% | |
| TTAACGGGATCACAATGCAG+GGG | + | chr5.1:8408784-8408803 | MS.gene20267:intron | 45.0% | |
| ! | ACTGGTTTAACCTGGAGACA+AGG | - | chr5.1:8409497-8409516 | None:intergenic | 45.0% |
| ! | AGTCCCTTTTGAGCAAAGAC+CGG | + | chr5.1:8407638-8407657 | MS.gene20267:CDS | 45.0% |
| ! | ATCAACCGTTCAAGTTCCCA+AGG | + | chr5.1:8409643-8409662 | MS.gene20267:CDS | 45.0% |
| !! | ATGGTATGACGGACAGATGT+GGG | + | chr5.1:8408863-8408882 | MS.gene20267:CDS | 45.0% |
| !! | CCTTGAATATGGTTTTGCGC+AGG | - | chr5.1:8408978-8408997 | None:intergenic | 45.0% |
| AACGAACCATGGTTGCTTCC+CGG | - | chr5.1:8407486-8407505 | None:intergenic | 50.0% | |
| ACTAAACCGGGAAGCAACCA+TGG | + | chr5.1:8407477-8407496 | MS.gene20267:CDS | 50.0% | |
| AGGAGGCCAGTACTGCAAAT+GGG | + | chr5.1:8409888-8409907 | MS.gene20267:CDS | 50.0% | |
| ATGCAGGGGTGGAGTTATGT+TGG | + | chr5.1:8408798-8408817 | MS.gene20267:intron | 50.0% | |
| GATCCTCCCATTTGCAGTAC+TGG | - | chr5.1:8409897-8409916 | None:intergenic | 50.0% | |
| GCTGTATTCATGGGGAGAAC+TGG | + | chr5.1:8408119-8408138 | MS.gene20267:CDS | 50.0% | |
| GTTAAGAGAGTAACCTCGGG+CGG | - | chr5.1:8408894-8408913 | None:intergenic | 50.0% | |
| TACAGAAGGGAGTTCCCACT+AGG | - | chr5.1:8408666-8408685 | None:intergenic | 50.0% | |
| TCGTTCTTTCTTCGCCTTGG+AGG | + | chr5.1:8408150-8408169 | MS.gene20267:CDS | 50.0% | |
| TGGATCTTCAGGAGGTAGCT+GGG | + | chr5.1:8407596-8407615 | MS.gene20267:CDS | 50.0% | |
| TTGGCAGTGTTCACAGTGCT+TGG | + | chr5.1:8408180-8408199 | MS.gene20267:CDS | 50.0% | |
| !! | ACTGGAGCATTGCTTGTCAC+TGG | + | chr5.1:8409548-8409567 | MS.gene20267:CDS | 50.0% |
| !! | GATGGTATGACGGACAGATG+TGG | + | chr5.1:8408862-8408881 | MS.gene20267:CDS | 50.0% |
| AGGCCAGTACTGCAAATGGG+AGG | + | chr5.1:8409891-8409910 | MS.gene20267:CDS | 55.0% | |
| AGGCGAAGAAAGAACGACCC+TGG | - | chr5.1:8408147-8408166 | None:intergenic | 55.0% | |
| AGGTAGCTGGGATCCTGGAT+TGG | + | chr5.1:8407608-8407627 | MS.gene20267:CDS | 55.0% | |
| CAGGAGGCCAGTACTGCAAA+TGG | + | chr5.1:8409887-8409906 | MS.gene20267:CDS | 55.0% | |
| GCGCAGGTGAAGTCTTCAGA+GGG | - | chr5.1:8408962-8408981 | None:intergenic | 55.0% | |
| GGGTCGTTCTTTCTTCGCCT+TGG | + | chr5.1:8408147-8408166 | MS.gene20267:CDS | 55.0% | |
| GTGGATCTTCAGGAGGTAGC+TGG | + | chr5.1:8407595-8407614 | MS.gene20267:CDS | 55.0% | |
| TCGTCCGCTTTCACATCTGC+AGG | - | chr5.1:8409790-8409809 | None:intergenic | 55.0% | |
| TGCGCAGGTGAAGTCTTCAG+AGG | - | chr5.1:8408963-8408982 | None:intergenic | 55.0% | |
| TTCTTCGCCTTGGAGGTCTC+TGG | + | chr5.1:8408157-8408176 | MS.gene20267:CDS | 55.0% | |
| ACGGGATCACAATGCAGGGG+TGG | + | chr5.1:8408787-8408806 | MS.gene20267:intron | 60.0% | |
| CATGGGGAGAACTGGGTCCA+GGG | + | chr5.1:8408127-8408146 | MS.gene20267:CDS | 60.0% | |
| CTGCCAACCAGAGACCTCCA+AGG | - | chr5.1:8408167-8408186 | None:intergenic | 60.0% | |
| TCAGGAGGTAGCTGGGATCC+TGG | + | chr5.1:8407603-8407622 | MS.gene20267:CDS | 60.0% | |
| TCATGGGGAGAACTGGGTCC+AGG | + | chr5.1:8408126-8408145 | MS.gene20267:CDS | 60.0% | |
| TCGCCTTGGAGGTCTCTGGT+TGG | + | chr5.1:8408161-8408180 | MS.gene20267:CDS | 60.0% | |
| TCTTGCAGCTGCTGCTGCTG+AGG | + | chr5.1:8409813-8409832 | MS.gene20267:CDS | 60.0% | |
| TGGGGATCATGGGGTGAGCA+AGG | + | chr5.1:8408574-8408593 | MS.gene20267:intron | 60.0% | |
| GCTGCTGCTGAGGCTGCAGA+TGG | + | chr5.1:8409823-8409842 | MS.gene20267:CDS | 65.0% | |
| GATGTGGGTCAAGCCGCCCG+AGG | + | chr5.1:8408878-8408897 | MS.gene20267:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.1 | gene | 8407429 | 8409927 | 8407429 | ID=MS.gene20267 |
| chr5.1 | mRNA | 8407429 | 8409927 | 8407429 | ID=MS.gene20267.t1;Parent=MS.gene20267 |
| chr5.1 | exon | 8407429 | 8407659 | 8407429 | ID=MS.gene20267.t1.exon1;Parent=MS.gene20267.t1 |
| chr5.1 | CDS | 8407429 | 8407659 | 8407429 | ID=cds.MS.gene20267.t1;Parent=MS.gene20267.t1 |
| chr5.1 | exon | 8408087 | 8408239 | 8408087 | ID=MS.gene20267.t1.exon2;Parent=MS.gene20267.t1 |
| chr5.1 | CDS | 8408087 | 8408239 | 8408087 | ID=cds.MS.gene20267.t1;Parent=MS.gene20267.t1 |
| chr5.1 | exon | 8408447 | 8408524 | 8408447 | ID=MS.gene20267.t1.exon3;Parent=MS.gene20267.t1 |
| chr5.1 | CDS | 8408447 | 8408524 | 8408447 | ID=cds.MS.gene20267.t1;Parent=MS.gene20267.t1 |
| chr5.1 | exon | 8408804 | 8408899 | 8408804 | ID=MS.gene20267.t1.exon4;Parent=MS.gene20267.t1 |
| chr5.1 | CDS | 8408804 | 8408899 | 8408804 | ID=cds.MS.gene20267.t1;Parent=MS.gene20267.t1 |
| chr5.1 | exon | 8409343 | 8409378 | 8409343 | ID=MS.gene20267.t1.exon5;Parent=MS.gene20267.t1 |
| chr5.1 | CDS | 8409343 | 8409378 | 8409343 | ID=cds.MS.gene20267.t1;Parent=MS.gene20267.t1 |
| chr5.1 | exon | 8409506 | 8409687 | 8409506 | ID=MS.gene20267.t1.exon6;Parent=MS.gene20267.t1 |
| chr5.1 | CDS | 8409506 | 8409687 | 8409506 | ID=cds.MS.gene20267.t1;Parent=MS.gene20267.t1 |
| chr5.1 | exon | 8409765 | 8409927 | 8409765 | ID=MS.gene20267.t1.exon7;Parent=MS.gene20267.t1 |
| chr5.1 | CDS | 8409765 | 8409927 | 8409765 | ID=cds.MS.gene20267.t1;Parent=MS.gene20267.t1 |
| Gene Sequence |
| Protein sequence |
