AlfalfaGEDB | MS.gene30202

M. sativa cultivar XinJiangDaYe / MS.gene30202

KEGG: -
GO: -
PFAM: PF11016.11

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene30202.t1	XP_013451290.2	94.8	289	7	2	1	282	1	288	3.50E-148	534.3

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene30202.t1	Q55403	37.6	186	106	4	89	272	2	179	2.3e-23	110.9

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene30202.t1	A0A396HF23	94.8	289	7	2	1	282	1	288	2.5e-148	534.3

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049137	MS.gene30202	0.855689	5.33E-62	-1.69E-46
MS.gene049171	MS.gene30202	0.8804	5.66E-70	-1.69E-46
MS.gene049173	MS.gene30202	0.811788	5.88E-51	-1.69E-46
MS.gene049217	MS.gene30202	0.804368	2.23E-49	-1.69E-46
MS.gene049222	MS.gene30202	0.859104	5.21E-63	-1.69E-46
MS.gene049285	MS.gene30202	0.863392	2.57E-64	-1.69E-46
MS.gene04932	MS.gene30202	-0.81667	4.91E-52	-1.69E-46
MS.gene049320	MS.gene30202	0.840949	6.39E-58	-1.69E-46
MS.gene049369	MS.gene30202	0.806616	7.54E-50	-1.69E-46
MS.gene049396	MS.gene30202	0.813369	2.65E-51	-1.69E-46

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene30202.t1	MTR_6g017260	97.802	273	5	1	10	282	9	280	0.0	546

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene30202.t1	AT5G38660	82.353	204	35	1	79	281	81	284	4.19e-124	355
MS.gene30202.t1	AT5G38660	84.444	180	28	0	79	258	81	260	4.70e-111	328

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Find 62 sgRNAs with CRISPR-Local

Find 234 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACGATTTATATGAGGTT+CGG	0.442396	6.3:-13202219	MS.gene30202:CDS
AAGTGCACCCATTCTACAGA+TGG	0.605114	6.3:-13203696	MS.gene30202:CDS
AATAACTTACTAAACCATAT+TGG	0.347677	6.3:+13204104	None:intergenic
ACAAGATGGAAAATATTGTT+TGG	0.433342	6.3:-13203519	MS.gene30202:CDS
ACAAGTGTCCTACTATCAAT+TGG	0.438133	6.3:+13206789	None:intergenic
ACAGCTTCTCAGTCTTCTTC+TGG	0.314907	6.3:-13206816	MS.gene30202:CDS
ACAGTGGAACCGGTGACCGG+AGG	0.649556	6.3:+13206980	None:intergenic
ACTTAGAGGAGGCGTTGAAA+CGG	0.543604	6.3:-13204132	MS.gene30202:CDS
AGAATGGGTGCACTTCTTCT+AGG	0.340329	6.3:+13203704	None:intergenic
ATAGCTGACCATTCAGATCC+AGG	0.491016	6.3:+13205199	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAGTTGAGAGAAAAATGACA+TGG	-	chr6.3:13203035-13203054	MS.gene30202:intron	30.0%
ACATAATGCTTTAACCTTAG+AGG	-	chr6.3:13206677-13206696	MS.gene30202:intron	30.0%
AGATAATGAAAAAGGAACTG+AGG	+	chr6.3:13202461-13202480	None:intergenic	30.0%
CATAATGCTTTAACCTTAGA+GGG	-	chr6.3:13206678-13206697	MS.gene30202:intron	30.0%
CTTAGCATGAAAACATGAAA+TGG	+	chr6.3:13202289-13202308	None:intergenic	30.0%
GAGATTACCTGTTTAAGAAT+AGG	+	chr6.3:13204644-13204663	None:intergenic	30.0%
GATAATGAAAAAGGAACTGA+GGG	+	chr6.3:13202460-13202479	None:intergenic	30.0%
GCATACTTTAATATTCTTCC+TGG	-	chr6.3:13203971-13203990	MS.gene30202:intron	30.0%
GGCTAGTAAAAATAAGCTAT+AGG	-	chr6.3:13203110-13203129	MS.gene30202:intron	30.0%
GTCAACATTAGAGATAGATT+TGG	-	chr6.3:13205561-13205580	MS.gene30202:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr6.3	gene	13202177	13207033	13202177	ID=MS.gene30202
chr6.3	mRNA	13202177	13207033	13202177	ID=MS.gene30202.t1;Parent=MS.gene30202
chr6.3	exon	13206761	13207033	13206761	ID=MS.gene30202.t1.exon1;Parent=MS.gene30202.t1
chr6.3	CDS	13206761	13207033	13206761	ID=cds.MS.gene30202.t1;Parent=MS.gene30202.t1
chr6.3	exon	13205353	13205399	13205353	ID=MS.gene30202.t1.exon2;Parent=MS.gene30202.t1
chr6.3	CDS	13205353	13205399	13205353	ID=cds.MS.gene30202.t1;Parent=MS.gene30202.t1
chr6.3	exon	13205150	13205252	13205150	ID=MS.gene30202.t1.exon3;Parent=MS.gene30202.t1
chr6.3	CDS	13205150	13205252	13205150	ID=cds.MS.gene30202.t1;Parent=MS.gene30202.t1
chr6.3	exon	13204555	13204641	13204555	ID=MS.gene30202.t1.exon4;Parent=MS.gene30202.t1
chr6.3	CDS	13204555	13204641	13204555	ID=cds.MS.gene30202.t1;Parent=MS.gene30202.t1
chr6.3	exon	13204114	13204197	13204114	ID=MS.gene30202.t1.exon5;Parent=MS.gene30202.t1
chr6.3	CDS	13204114	13204197	13204114	ID=cds.MS.gene30202.t1;Parent=MS.gene30202.t1
chr6.3	exon	13203685	13203738	13203685	ID=MS.gene30202.t1.exon6;Parent=MS.gene30202.t1
chr6.3	CDS	13203685	13203738	13203685	ID=cds.MS.gene30202.t1;Parent=MS.gene30202.t1
chr6.3	exon	13203466	13203546	13203466	ID=MS.gene30202.t1.exon7;Parent=MS.gene30202.t1
chr6.3	CDS	13203466	13203546	13203466	ID=cds.MS.gene30202.t1;Parent=MS.gene30202.t1
chr6.3	exon	13202363	13202408	13202363	ID=MS.gene30202.t1.exon8;Parent=MS.gene30202.t1
chr6.3	CDS	13202363	13202408	13202363	ID=cds.MS.gene30202.t1;Parent=MS.gene30202.t1
chr6.3	exon	13202177	13202250	13202177	ID=MS.gene30202.t1.exon9;Parent=MS.gene30202.t1
chr6.3	CDS	13202177	13202250	13202177	ID=cds.MS.gene30202.t1;Parent=MS.gene30202.t1

Gene Sequence

>MS.gene30202

ATGATGTTATTTGAATGCAAAGCCGTGTCCTCCTCCGGTCACCGGTTCCACTGTCTACCTCCTCTTCAACTCACAAAGTCTCCACTTGTTTCTGTTGTTCATCCTCAATCCATTTCATGTTTTCATGCTAAGCTTTTCTTCAAAAGCAATAGGTTTAGTTTTGTTCCGGTAAGAGCTGCTGATTCTTCAACTACTACAGCTTCTCAGTCTTCTTCTGGTGTTCCAATTGATAGTAGGACACTTGTTCCTGATGATGAAATCTCCATCACTAAGGTATACTCCCTCAGTTCCTTTTTCATTATCTTTTTTTAAGGCTGTGTTTGGTGGTGAGATAAAGTTTTGAGCTTATATTTTTCGTACATGCTTATGACAATAGCTGAAAATATAGTTGATAAATTAGCTTATAGCGGATGGACTTATAACTTATAGCTGAAAAACACAGTTTATATAGCAGATAAGCTGATTGAACCCTGTTTGGATAAACAATTTATTTGCAGCTTATATCACAAGCACTTATCATGATAAGCGCTTATGTGTAAGCTTACATAAGCTATTTCTATAGGAAAAGATAAAATCAAGTTAAATTGTTTTTGTATAAGCTATAAGTTGTTTTCATAAGCTGTCTTGGAGAACTTATGAAATTAAGCTGAAAAAACTTACGAAAAGTGTCATAAGCTTTTTTTGTTCATAAGTTCTCCAAAACATTCTCATAAAACTTATGCTAGTAGAGAAATTTAAATAAGCCAATCCAACCAGGCTTGTAGTATTTGGTAAGTTGAACTAGCTTGTAAATATGAAATGACATAAACAAGATATGCTTAATAAATATTTAATTTTCAAATTAAGATAACAAGAATAAAGTTGAGAGAAAAATGACATGGTATAAGTTTTAAGCTATAAGCTATTTGAATCAGCTTATCAAATAACATTAAAGGCTAGTAAAAATAAGCTATAGGCTCGTAAGAAAACAACGGTTACCAAACAAGTCTTTTTTAGTCATATGAACTTATAAGCTATAAGCTAGTTTATTGTACTTTCCAAACAGTCCCTAAAACATTTTTTGATAAGTTACTTCAAGTAGTTTATAACTTTAAGCTTATCATTTTCTTCTCTCAATTTTACCTATGTATTGAAGTTTGTATAAGATATTTCAATAATCAATAAAAAGAGAATGCAGTGAAGTTGTTTTCATAACTATCCAGAACTTACACAATGCCCGGATAGGTATGGACGCATCATAAACTATTTTCACAAGCTCTCACAAACAATTACATGTCGTGTTTACTGTTAAATGAGTTTGGGTTTCACTCTCAAATTCTAGCTTAATAGATGAATCTGCCTAAGTACACATGTACATTGCATAGTCCGGAAACTTTGACAATTTCAACACATATGAAACTTCAATATTTATGTCATAAGATAAGTTGAAATAAACTTTTCAAAGCACAGTCTTACTGAATATTGACTTAATTAAGTTGTTCACACAACCAACTCTAAGTATAAAAAATCATTTAAGTTATTAAGAATCAATCAGTAAATTTTTCGATCAATGTATGTGACTGACACTTCATCCTTTGAAATATACTCTTGACTTCGGGGGATATTGATTCTCAGGATATTGTTAAATTTTGCAGATTTCATTTGGTACGATTGGACTAAGTCTTGGAGTCTCACTCTTGTCGTGAGTATTGTTTTCTTTTCCACCTTCTTCATTGATATATCATTATAGTTTTTCACCTTATGTTTTTTTTTTTTTCCTTTTATTTGTTTTAAATACTCAGCTATGGTTTTGGAGCATACTTTAATATTCTTCCTGGATCTGAATGGTCAGCTATAATGTTAACATATGGTTTCCCTCTTGCTATCATTGGCATGGCACTCAAGGTGAATAATTTTTTTGTTAATGTGAATCATGTTATAAGAAGGAGTTCATGATACTGACATTTTTTTTGTTAGAAGTGATTGAATGTAAACACACATGTCAGTGTCATGCGAGTGTCAGACACGGACATGAGTTGTACACTCGGACACACCTTCAAACTTGACGTGTCAGTGCTACATAGATAACAACATTGTGTGTCCAGTCATGTTGGGATTTCACCTTCTTAATGTTCGTGCGGTTGCTTTGCGGTTCTATGCACTGGTTTTGGTGGATGCTTCTCTGGGTCATGCACTCTTTATATGTAACACTGACACTTCAAATTGAAGGTGTGTCGGTGTTGGACACTAACACGACACTGACACTTGTAGTTACATTCAATTACTTCCATTTTCGCAAATTATTACCGGTGTCGATGTGTCAATGTTGGGTTCAGTATCTGTGATAGTGCTCCATAGCTCATAGCTCTTCAGCATTCTTCATACTATTTTCATTGGACCGTCTTTTTTGCAGTATGCAGAACTCAAGCCAGTGCCATGCCTCACATATGCAGATGCTTACAAATTGCAAGAAAAATGTGCAACTCCTATTCTTAAACAGGTAATCTCATCATAGACTCATTCTTCTTGCTATATATTGTTATTTTAAATGTCTCTTGTGATGGAGTTTTCTTCTTTTACATTTCTAGCAGTTGGAAATATTCTGTATTTTTATGTCTCTAGTTAAATGTTGTTTCCATGTCAAAAAAAAAAAAAAAACATTTTATGCATTAAAAATCAAATCCCTCTATGTTTCTCAAAAGACATAAATTTATTTTTAACTATGTTGTGACACTCTTTTCTTGGTATGTTATATTAAATATTAAAGAGAAGAATCACATAATGATTTTTCTGTTAATTACCAATATATTCAATCTTTCTTCTAATCACTTAAAGTGGCTCTTTTGTGCTTTTAAAGGTGAAGAGTGATGTTACCAGATATCGCTATGGGGATGAACAACACTTAGAGGAGGCGTTGAAACGGATTTTCCAATATGGTTTAGTAAGTTATTTGAATTATCTCCTCTCATTTTATTTTTATTTTTATTGAATTATCTTCCAAATGGTCTCAAAAGTGCAGATAAGCTCTAATAAGTCAATCCAATCAGACTTTTAAGATGAATTGGTTCTTGACAGCTTATGTACATGTCACATGTTGTTTCCATAACCTTTTCCAAATGGTCTCAAAATTGCTTACACAAGTAGATAAGCTCTAATAAGTCAATCCAAATAGACCTTTAGGATGAAGGAGCAAAAGACTTTCTTACAACTTTCTGATATCTTCATCCATACTAGCTGCATTATCTAGACACTGAGGTTTCCTCTATGTGCTCTTGTTGCAATTTTGAGACATCATATTATCTGCTTTTTGTTTCAGGGAAATGGAATCCCTAGAAGAAGTGCACCCATTCTACAGATGGTTCGTGAAGAGGTACGCTTGTCAATTTGAATTAATTCATTAGAAATGTCAACATTAGAGATAGATTTGGTAATAGACGACCCAACTTAGTGGGATAAGACTTCATTGTTATCGTTTTTGTTGTCCTCTAATAATATGCCTATGTTTTAGGTCACACAAGATGGAAAATATTGTTTGGTCTTGGTTTTCGAGGCTAAGGCTCTAAAGTTGTCAGATTTTGAACAGAGACAGGTATTCAGCTGCTTTCCTGAATACATTTTTAATTACTTAGATTTTGTATTCATCTTTCTCACCTCTTCATGAGCATAAGGACACTCTTAATTATATTACTCTTGCAAACCTTTCACACAAAAATGTTGCAATGATACGAATTGTCGGCTCGAAGCTCAAGCATTCCACTCTGATCAAAGGACCAAATTACCAATTCGTTACTGAGATATTTATTCAAAACCCTACAAAATATTTATAGTTGAGGTGTTTCAAAATTAGTTGATCAAGCAAACCTATAAAACCAGCTCATGGTCCAAAATTTTATGACTATGATATCTGATCTTCAAAATTGCACAAAACGATTCTTAAGAGATCAAATATGGTGGCATCGTGATTTTGTGAAGCTTCAAATTATAGCTTTAGCCAAAACCATGGTGACTCGCCATGATTGAGCCAATCCAACCGTCAAACAAAACAAGAGTCTGTTTTATAGTTAAGAATGCTCCAAGTGTACTTTTTCCTGGAGGAAGAACTTTTTTCGTTGAAAAAAGTGTTGCTTTTTTCATTGAAAATTGTGCTTCGTAATTGCTATTTTTTGTTCGTTACTTAAAGTAAACTAAACAGGTTTAAACCCTCATTAAACCCTCTTTGGATAAACAAACTTAATTAAGCTCTTATAACATAAACTCTTATCATGTAAGAGTTTATGCATAGGTTATTTGTATAACATAAGATAAAATAATGTCAAACTCTTTTCATATAATCTGTTTTCATAAGCTATCATTGAGAGCTTATGAAAATAAGCTGAAAACAGCTTATAGACATGTCATGAACTGTTTCATAAGCTCTTCTAAACAGTCTCACAAATGCTTATGTCACTAGATAAGCTCAAATAATTCAATCCAAGAAGGCCTTAGTAGTGCTAATCCTATTCATAACCACATTATAAACAGACATAATGCTTTAACCTTAGAGGGCTGCTTCTAGAATTTAATCAAATTCAATTCTTATTATCTGTAAATGTAAGATCCTCTGGAGTTTTAATATATTTCTCAACTTCTTCTATTTGGTGTTGCAGGCTAAATTTACTTCATTCTTTGGGCCTGGAATTACAGCAGAAGTTGGTGAGTAAATTTGTTAAAAACTATGCTTATATTGCTTAATCTTGAGCATTAAAAGACACAAAATGTGTATGAAAATGAATGAATGGATTCTGACATAATATTTGTGCTGCAGGTAAGGGCGAAAACGATTTATATGAGGTTCGGCTTATCTCAAATACAGACCCTAATGCTGCATCTTCTCCATGA

Protein sequence

>MS.gene30202.t1

MMLFECKAVSSSGHRFHCLPPLQLTKSPLVSVVHPQSISCFHAKLFFKSNRFSFVPVRAADSSTTTASQSSSGVPIDSRTLVPDDEISITKISFGTIGLSLGVSLLSYGFGAYFNILPGSEWSAIMLTYGFPLAIIGMALKYAELKPVPCLTYADAYKLQEKCATPILKQVKSDVTRYRYGDEQHLEEALKRIFQYGLGNGIPRRSAPILQMVREEVTQDGKYCLVLVFEAKALKLSDFEQRQAKFTSFFGPGITAEVGKGENDLYEVRLISNTDPNAASSP