Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene08083.t1 | XP_003600478.1 | 100 | 223 | 0 | 0 | 1 | 223 | 1 | 223 | 1.60E-124 | 455.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene08083.t1 | Q8L9X2 | 54.1 | 220 | 82 | 3 | 1 | 219 | 1 | 202 | 4.2e-60 | 232.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene08083.t1 | G7J266 | 100.0 | 223 | 0 | 0 | 1 | 223 | 1 | 223 | 1.2e-124 | 455.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049170 | MS.gene08083 | 0.844396 | 7.76E-59 | -1.69E-46 |
| MS.gene04932 | MS.gene08083 | -0.80515 | 1.53E-49 | -1.69E-46 |
| MS.gene049356 | MS.gene08083 | 0.846851 | 1.67E-59 | -1.69E-46 |
| MS.gene049369 | MS.gene08083 | 0.848817 | 4.81E-60 | -1.69E-46 |
| MS.gene049396 | MS.gene08083 | 0.835034 | 2.12E-56 | -1.69E-46 |
| MS.gene049757 | MS.gene08083 | 0.824252 | 8.93E-54 | -1.69E-46 |
| MS.gene050060 | MS.gene08083 | 0.872693 | 2.61E-67 | -1.69E-46 |
| MS.gene050399 | MS.gene08083 | 0.808558 | 2.92E-50 | -1.69E-46 |
| MS.gene050400 | MS.gene08083 | 0.819418 | 1.17E-52 | -1.69E-46 |
| MS.gene050426 | MS.gene08083 | -0.822017 | 2.97E-53 | -1.69E-46 |
| MS.gene050553 | MS.gene08083 | 0.817354 | 3.44E-52 | -1.69E-46 |
| MS.gene050670 | MS.gene08083 | 0.837205 | 5.96E-57 | -1.69E-46 |
| MS.gene050809 | MS.gene08083 | -0.812354 | 4.42E-51 | -1.69E-46 |
| MS.gene05081 | MS.gene08083 | 0.813783 | 2.15E-51 | -1.69E-46 |
| MS.gene050971 | MS.gene08083 | 0.857666 | 1.40E-62 | -1.69E-46 |
| MS.gene05105 | MS.gene08083 | 0.840242 | 9.78E-58 | -1.69E-46 |
| MS.gene051455 | MS.gene08083 | 0.819669 | 1.03E-52 | -1.69E-46 |
| MS.gene051521 | MS.gene08083 | 0.810681 | 1.02E-50 | -1.69E-46 |
| MS.gene051605 | MS.gene08083 | 0.802206 | 6.26E-49 | -1.69E-46 |
| MS.gene051734 | MS.gene08083 | 0.819727 | 9.98E-53 | -1.69E-46 |
| MS.gene051838 | MS.gene08083 | 0.82257 | 2.21E-53 | -1.69E-46 |
| MS.gene051874 | MS.gene08083 | 0.805358 | 1.39E-49 | -1.69E-46 |
| MS.gene052077 | MS.gene08083 | 0.834405 | 3.05E-56 | -1.69E-46 |
| MS.gene052134 | MS.gene08083 | 0.832142 | 1.12E-55 | -1.69E-46 |
| MS.gene052135 | MS.gene08083 | 0.832451 | 9.39E-56 | -1.69E-46 |
| MS.gene052136 | MS.gene08083 | 0.84127 | 5.26E-58 | -1.69E-46 |
| MS.gene052188 | MS.gene08083 | 0.859577 | 3.76E-63 | -1.69E-46 |
| MS.gene052253 | MS.gene08083 | 0.803626 | 3.19E-49 | -1.69E-46 |
| MS.gene052310 | MS.gene08083 | 0.80995 | 1.47E-50 | -1.69E-46 |
| MS.gene052340 | MS.gene08083 | 0.862943 | 3.54E-64 | -1.69E-46 |
| MS.gene05240 | MS.gene08083 | -0.804315 | 2.29E-49 | -1.69E-46 |
| MS.gene052414 | MS.gene08083 | 0.869977 | 2.07E-66 | -1.69E-46 |
| MS.gene052469 | MS.gene08083 | 0.849185 | 3.80E-60 | -1.69E-46 |
| MS.gene052870 | MS.gene08083 | 0.809057 | 2.28E-50 | -1.69E-46 |
| MS.gene052872 | MS.gene08083 | 0.80032 | 1.52E-48 | -1.69E-46 |
| MS.gene05316 | MS.gene08083 | 0.822174 | 2.73E-53 | -1.69E-46 |
| MS.gene053449 | MS.gene08083 | 0.867009 | 1.88E-65 | -1.69E-46 |
| MS.gene053557 | MS.gene08083 | 0.810575 | 1.08E-50 | -1.69E-46 |
| MS.gene053758 | MS.gene08083 | 0.844591 | 6.87E-59 | -1.69E-46 |
| MS.gene053912 | MS.gene08083 | 0.872751 | 2.50E-67 | -1.69E-46 |
| MS.gene053916 | MS.gene08083 | 0.806437 | 8.23E-50 | -1.69E-46 |
| MS.gene054349 | MS.gene08083 | 0.862058 | 6.63E-64 | -1.69E-46 |
| MS.gene054884 | MS.gene08083 | -0.808686 | 2.74E-50 | -1.69E-46 |
| MS.gene05494 | MS.gene08083 | 0.834646 | 2.66E-56 | -1.69E-46 |
| MS.gene05505 | MS.gene08083 | 0.80331 | 3.71E-49 | -1.69E-46 |
| MS.gene055116 | MS.gene08083 | 0.833434 | 5.34E-56 | -1.69E-46 |
| MS.gene055539 | MS.gene08083 | 0.831905 | 1.28E-55 | -1.69E-46 |
| MS.gene05553 | MS.gene08083 | 0.809521 | 1.82E-50 | -1.69E-46 |
| MS.gene055741 | MS.gene08083 | 0.851723 | 7.37E-61 | -1.69E-46 |
| MS.gene055744 | MS.gene08083 | 0.859471 | 4.04E-63 | -1.69E-46 |
| MS.gene056233 | MS.gene08083 | 0.837413 | 5.27E-57 | -1.69E-46 |
| MS.gene056387 | MS.gene08083 | 0.809563 | 1.78E-50 | -1.69E-46 |
| MS.gene056422 | MS.gene08083 | 0.802128 | 6.50E-49 | -1.69E-46 |
| MS.gene056511 | MS.gene08083 | 0.855145 | 7.68E-62 | -1.69E-46 |
| MS.gene056609 | MS.gene08083 | 0.807136 | 5.86E-50 | -1.69E-46 |
| MS.gene056659 | MS.gene08083 | 0.816995 | 4.15E-52 | -1.69E-46 |
| MS.gene056719 | MS.gene08083 | 0.834778 | 2.46E-56 | -1.69E-46 |
| MS.gene057076 | MS.gene08083 | 0.829862 | 4.06E-55 | -1.69E-46 |
| MS.gene057124 | MS.gene08083 | 0.819024 | 1.44E-52 | -1.69E-46 |
| MS.gene057199 | MS.gene08083 | 0.81684 | 4.49E-52 | -1.69E-46 |
| MS.gene057396 | MS.gene08083 | 0.841138 | 5.70E-58 | -1.69E-46 |
| MS.gene057537 | MS.gene08083 | 0.817672 | 2.92E-52 | -1.69E-46 |
| MS.gene057734 | MS.gene08083 | 0.823224 | 1.55E-53 | -1.69E-46 |
| MS.gene057749 | MS.gene08083 | 0.813137 | 2.98E-51 | -1.69E-46 |
| MS.gene057823 | MS.gene08083 | 0.810969 | 8.85E-51 | -1.69E-46 |
| MS.gene057856 | MS.gene08083 | 0.808704 | 2.72E-50 | -1.69E-46 |
| MS.gene057927 | MS.gene08083 | 0.809346 | 1.98E-50 | -1.69E-46 |
| MS.gene058007 | MS.gene08083 | 0.842249 | 2.90E-58 | -1.69E-46 |
| MS.gene058120 | MS.gene08083 | 0.822727 | 2.03E-53 | -1.69E-46 |
| MS.gene058376 | MS.gene08083 | 0.83086 | 2.31E-55 | -1.69E-46 |
| MS.gene058444 | MS.gene08083 | 0.829388 | 5.29E-55 | -1.69E-46 |
| MS.gene058448 | MS.gene08083 | 0.828615 | 8.15E-55 | -1.69E-46 |
| MS.gene058928 | MS.gene08083 | 0.877016 | 8.81E-69 | -1.69E-46 |
| MS.gene059285 | MS.gene08083 | 0.82087 | 5.46E-53 | -1.69E-46 |
| MS.gene059366 | MS.gene08083 | 0.835272 | 1.85E-56 | -1.69E-46 |
| MS.gene059402 | MS.gene08083 | -0.823848 | 1.11E-53 | -1.69E-46 |
| MS.gene059455 | MS.gene08083 | 0.801214 | 1.00E-48 | -1.69E-46 |
| MS.gene059674 | MS.gene08083 | 0.848875 | 4.64E-60 | -1.69E-46 |
| MS.gene059688 | MS.gene08083 | 0.825788 | 3.87E-54 | -1.69E-46 |
| MS.gene059692 | MS.gene08083 | 0.820743 | 5.84E-53 | -1.69E-46 |
| MS.gene059695 | MS.gene08083 | 0.817773 | 2.77E-52 | -1.69E-46 |
| MS.gene059717 | MS.gene08083 | 0.866233 | 3.31E-65 | -1.69E-46 |
| MS.gene059788 | MS.gene08083 | 0.814514 | 1.48E-51 | -1.69E-46 |
| MS.gene059807 | MS.gene08083 | 0.887627 | 1.21E-72 | -1.69E-46 |
| MS.gene060247 | MS.gene08083 | 0.808577 | 2.89E-50 | -1.69E-46 |
| MS.gene060372 | MS.gene08083 | 0.810013 | 1.42E-50 | -1.69E-46 |
| MS.gene060717 | MS.gene08083 | 0.812005 | 5.27E-51 | -1.69E-46 |
| MS.gene060818 | MS.gene08083 | 0.809738 | 1.63E-50 | -1.69E-46 |
| MS.gene060832 | MS.gene08083 | 0.826916 | 2.09E-54 | -1.69E-46 |
| MS.gene060835 | MS.gene08083 | 0.808218 | 3.45E-50 | -1.69E-46 |
| MS.gene060837 | MS.gene08083 | 0.818086 | 2.36E-52 | -1.69E-46 |
| MS.gene06097 | MS.gene08083 | 0.803419 | 3.52E-49 | -1.69E-46 |
| MS.gene060981 | MS.gene08083 | 0.831469 | 1.64E-55 | -1.69E-46 |
| MS.gene061041 | MS.gene08083 | 0.831271 | 1.83E-55 | -1.69E-46 |
| MS.gene061154 | MS.gene08083 | 0.845462 | 4.00E-59 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene08083.t1 | MTR_3g061630 | 100.000 | 223 | 0 | 0 | 1 | 223 | 1 | 223 | 1.93e-170 | 468 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene08083.t1 | AT5G19855 | 54.091 | 220 | 82 | 3 | 1 | 219 | 1 | 202 | 7.37e-82 | 243 |
| MS.gene08083.t1 | AT5G19855 | 45.679 | 162 | 69 | 3 | 1 | 161 | 1 | 144 | 8.74e-44 | 144 |
Find 45 sgRNAs with CRISPR-Local
Find 175 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGCTTAACCTTTATGCTAAA+TGG | 0.110147 | 3.3:+49522872 | MS.gene08083:CDS |
| TTATAAAACCACGTATATTT+AGG | 0.215191 | 3.3:-49520924 | None:intergenic |
| TTGACTCTCCATTCCCTTCC+AGG | 0.282181 | 3.3:-49520020 | None:intergenic |
| GTGGGAGCAATATCTGTTAT+TGG | 0.291042 | 3.3:+49519816 | MS.gene08083:CDS |
| CCTTGACCCATTTAGCATAA+AGG | 0.329549 | 3.3:-49522879 | None:intergenic |
| GACAGCAGCTCAGAATTAAT+TGG | 0.346920 | 3.3:+49523095 | MS.gene08083:CDS |
| TTTGATGGGAAAGAAGCATT+TGG | 0.380847 | 3.3:+49519947 | MS.gene08083:CDS |
| CGCGGCGGCGGAAGAACAAT+GGG | 0.401961 | 3.3:+49519975 | MS.gene08083:CDS |
| AGAAGCAAAGGAGTGAAGAT+AGG | 0.406816 | 3.3:+49520060 | MS.gene08083:CDS |
| GCTTAACCTTTATGCTAAAT+GGG | 0.410431 | 3.3:+49522873 | MS.gene08083:CDS |
| TTGAGATTCATATTAGTTGT+TGG | 0.412533 | 3.3:-49519891 | None:intergenic |
| TGTTATTGGTTCATCAATGA+TGG | 0.412805 | 3.3:+49519830 | MS.gene08083:CDS |
| GTTACCATTGTTAGTGAGCT+TGG | 0.439389 | 3.3:+49520086 | MS.gene08083:CDS |
| GACTCATGGAGACAGTAATA+TGG | 0.445142 | 3.3:+49523063 | MS.gene08083:CDS |
| ACTAATATGAATCTCAAGAT+TGG | 0.454557 | 3.3:+49519897 | MS.gene08083:CDS |
| TCCTTTGCTTCTTACAACTT+CGG | 0.468506 | 3.3:-49520049 | None:intergenic |
| TTCTGAGCTGCTGTCATCTG+AGG | 0.484742 | 3.3:-49523087 | None:intergenic |
| GCCGAAGTTGTAAGAAGCAA+AGG | 0.490733 | 3.3:+49520048 | MS.gene08083:CDS |
| TCAAATATCAGATGAAAACT+TGG | 0.498143 | 3.3:+49523025 | MS.gene08083:CDS |
| ATGAATCTCAAGATTGGTTG+TGG | 0.515787 | 3.3:+49519903 | MS.gene08083:CDS |
| AGAGTACCTTCCCAAGCAAT+CGG | 0.524539 | 3.3:-49522475 | None:intergenic |
| TAAAACCACGTATATTTAGG+TGG | 0.529191 | 3.3:-49520921 | None:intergenic |
| GCGCGGCGGCGGAAGAACAA+TGG | 0.533031 | 3.3:+49519974 | MS.gene08083:CDS |
| CATTTGGAAAAGCGCGGCGG+CGG | 0.533131 | 3.3:+49519963 | MS.gene08083:CDS |
| GTTGATGAGGGAACGACTCA+TGG | 0.541090 | 3.3:+49523049 | MS.gene08083:CDS |
| CTGAAAGAGTGATGTTGACT+CGG | 0.544416 | 3.3:+49522851 | MS.gene08083:CDS |
| ATGAAAACTTGGAGTTGATG+AGG | 0.546304 | 3.3:+49523036 | MS.gene08083:CDS |
| GCTCAACTATTTCACGTACA+AGG | 0.554693 | 3.3:+49520860 | MS.gene08083:CDS |
| ACCATTGTTAGTGAGCTTGG+TGG | 0.561493 | 3.3:+49520089 | MS.gene08083:CDS |
| CACTGGTCCATGTTTGTGTG+TGG | 0.571186 | 3.3:+49519860 | MS.gene08083:CDS |
| TGAAAACTTGGAGTTGATGA+GGG | 0.575874 | 3.3:+49523037 | MS.gene08083:CDS |
| CCTTTATGCTAAATGGGTCA+AGG | 0.576109 | 3.3:+49522879 | MS.gene08083:CDS |
| TCTGAGCTGCTGTCATCTGA+GGG | 0.576725 | 3.3:-49523086 | None:intergenic |
| AAAACCACGTATATTTAGGT+GGG | 0.578910 | 3.3:-49520920 | None:intergenic |
| TTACTGATCCTGGAAGGGAA+TGG | 0.584500 | 3.3:+49520012 | MS.gene08083:CDS |
| GTATCAAACAAACCACAAGA+TGG | 0.596691 | 3.3:+49522440 | MS.gene08083:CDS |
| AGTGCATCCACACACAAACA+TGG | 0.606637 | 3.3:-49519867 | None:intergenic |
| TCAATGATGGACTCACACAC+TGG | 0.620604 | 3.3:+49519843 | MS.gene08083:CDS |
| TTGTGAGAGAGGAATATGGT+GGG | 0.625325 | 3.3:+49519798 | None:intergenic |
| ACCACCAAGCTCACTAACAA+TGG | 0.632085 | 3.3:-49520090 | None:intergenic |
| AAGAAGCATTTGGAAAAGCG+CGG | 0.684459 | 3.3:+49519957 | MS.gene08083:CDS |
| ATTTCACGTACAAGGCTGTG+AGG | 0.686265 | 3.3:+49520868 | MS.gene08083:CDS |
| AAGCATTTGGAAAAGCGCGG+CGG | 0.723101 | 3.3:+49519960 | MS.gene08083:CDS |
| TGAACCCACCTAAATATACG+TGG | 0.753733 | 3.3:+49520916 | MS.gene08083:CDS |
| GCGGCGGCGGAAGAACAATG+GGG | 0.754151 | 3.3:+49519976 | MS.gene08083:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTTAAAAGTAGAAAAAAAAA+AGG | - | chr3.3:49521931-49521950 | None:intergenic | 10.0% |
| !!! | CTTTTATATAAATTAGAATA+TGG | + | chr3.3:49520731-49520750 | MS.gene08083:intron | 10.0% |
| !!! | TAATATAATCTAAATTTTGT+TGG | + | chr3.3:49520147-49520166 | MS.gene08083:intron | 10.0% |
| !!! | TTTGTATTTAAAATCTTATT+AGG | + | chr3.3:49520290-49520309 | MS.gene08083:intron | 10.0% |
| !! | AATAGAAAACATTATATTCA+AGG | - | chr3.3:49520992-49521011 | None:intergenic | 15.0% |
| !! | AGATTAATATTGTTAAACAA+TGG | - | chr3.3:49522969-49522988 | None:intergenic | 15.0% |
| !! | TTCAAATTCAAATGTATTAT+TGG | - | chr3.3:49522764-49522783 | None:intergenic | 15.0% |
| !! | TTTGACCAATTATTTATTTA+AGG | - | chr3.3:49521605-49521624 | None:intergenic | 15.0% |
| !! | AAGTAATTACCATACTATAT+GGG | - | chr3.3:49522376-49522395 | None:intergenic | 20.0% |
| !! | AAGTGAATATGAATTATTCA+TGG | - | chr3.3:49522810-49522829 | None:intergenic | 20.0% |
| !! | AATTCTATAGTTCATAGTTA+CGG | + | chr3.3:49520638-49520657 | MS.gene08083:intron | 20.0% |
| !! | ACCAATTATTTATTTAAGGA+AGG | - | chr3.3:49521601-49521620 | None:intergenic | 20.0% |
| !! | AGATGAAATGAATAATAACT+AGG | - | chr3.3:49522512-49522531 | None:intergenic | 20.0% |
| !! | CATATAAAGATTAAAAGTTG+AGG | - | chr3.3:49520492-49520511 | None:intergenic | 20.0% |
| !! | GATAGATGAAAGAATTATTT+AGG | - | chr3.3:49521823-49521842 | None:intergenic | 20.0% |
| !! | GATGAAATGAATAATAACTA+GGG | - | chr3.3:49522511-49522530 | None:intergenic | 20.0% |
| !! | TAAGTAATTACCATACTATA+TGG | - | chr3.3:49522377-49522396 | None:intergenic | 20.0% |
| !! | TCCTTCCTTAAATAAATAAT+TGG | + | chr3.3:49521597-49521616 | MS.gene08083:intron | 20.0% |
| !! | TGATAAAAACATTGAATCAA+AGG | - | chr3.3:49520199-49520218 | None:intergenic | 20.0% |
| !! | TTAACTAAAAGGACTTATTT+GGG | - | chr3.3:49521690-49521709 | None:intergenic | 20.0% |
| !! | TTATAAAACCACGTATATTT+AGG | - | chr3.3:49520927-49520946 | None:intergenic | 20.0% |
| !! | TTTAACTAAAAGGACTTATT+TGG | - | chr3.3:49521691-49521710 | None:intergenic | 20.0% |
| !!! | AAATAAGTCCTTTTAGTTAA+AGG | + | chr3.3:49521690-49521709 | MS.gene08083:intron | 20.0% |
| !!! | AACATCAACTTTTTTCTTAA+AGG | - | chr3.3:49522300-49522319 | None:intergenic | 20.0% |
| !!! | AAGTACATTCATATTTCTAA+TGG | - | chr3.3:49520570-49520589 | None:intergenic | 20.0% |
| !!! | ACATGTAAAATAATTTGTGA+AGG | + | chr3.3:49522937-49522956 | MS.gene08083:intron | 20.0% |
| !!! | ATTTATGTTTTGTTCTATGT+TGG | + | chr3.3:49522407-49522426 | MS.gene08083:intron | 20.0% |
| !!! | CAAATTATTTTACATGTCTT+TGG | - | chr3.3:49522934-49522953 | None:intergenic | 20.0% |
| ! | AAAAGTTGAGGAAATACAAA+AGG | - | chr3.3:49520480-49520499 | None:intergenic | 25.0% |
| ! | AAACAACATTGGAAAAATCT+TGG | - | chr3.3:49521443-49521462 | None:intergenic | 25.0% |
| ! | AAACAAGTCCTTTAACTAAA+AGG | - | chr3.3:49521701-49521720 | None:intergenic | 25.0% |
| ! | AAATCTATTAATCACTGACA+CGG | + | chr3.3:49520373-49520392 | MS.gene08083:intron | 25.0% |
| ! | AATGATCATTATTGAACAGA+AGG | - | chr3.3:49520605-49520624 | None:intergenic | 25.0% |
| ! | AATTGCAAATGTTAGTATGT+TGG | - | chr3.3:49522064-49522083 | None:intergenic | 25.0% |
| ! | ACTAATATGAATCTCAAGAT+TGG | + | chr3.3:49519897-49519916 | MS.gene08083:CDS | 25.0% |
| ! | ATAATTCATATTCACTTGAC+AGG | + | chr3.3:49522813-49522832 | MS.gene08083:intron | 25.0% |
| ! | ATACATGATGACTCTAATAT+AGG | + | chr3.3:49521043-49521062 | MS.gene08083:intron | 25.0% |
| ! | ATAGTTATAGCATCAATATC+AGG | - | chr3.3:49520333-49520352 | None:intergenic | 25.0% |
| ! | ATTATGTGTTGAACAAAAAG+AGG | + | chr3.3:49521958-49521977 | MS.gene08083:intron | 25.0% |
| ! | GTAAGTGAATTCTTTATTCT+AGG | + | chr3.3:49520947-49520966 | MS.gene08083:intron | 25.0% |
| ! | TCAAATATCAGATGAAAACT+TGG | + | chr3.3:49523025-49523044 | MS.gene08083:CDS | 25.0% |
| ! | TTATGTGTTGAACAAAAAGA+GGG | + | chr3.3:49521959-49521978 | MS.gene08083:intron | 25.0% |
| ! | TTGAGATTCATATTAGTTGT+TGG | - | chr3.3:49519894-49519913 | None:intergenic | 25.0% |
| !! | AGTTAATCAGATGCAAATTT+TGG | - | chr3.3:49522643-49522662 | None:intergenic | 25.0% |
| !! | GAGCTCATAATTTTGTTAAA+AGG | + | chr3.3:49521390-49521409 | MS.gene08083:intron | 25.0% |
| !! | GTTTGATTTAAAAGTAGACA+TGG | - | chr3.3:49522167-49522186 | None:intergenic | 25.0% |
| !! | TTTAGTTAAAGGACTTGTTT+GGG | + | chr3.3:49521701-49521720 | MS.gene08083:intron | 25.0% |
| !! | TTTTACAATCCCATATAGTA+TGG | + | chr3.3:49522364-49522383 | MS.gene08083:intron | 25.0% |
| !!! | AACATATTTTGAGTCAAGAT+TGG | + | chr3.3:49520250-49520269 | MS.gene08083:intron | 25.0% |
| !!! | AGGGAAAAAAAGTGTTAAAA+AGG | - | chr3.3:49521492-49521511 | None:intergenic | 25.0% |
| !!! | AGTTTTCATTGATTTGAAGA+AGG | - | chr3.3:49521132-49521151 | None:intergenic | 25.0% |
| !!! | TGAGTATAGCTATATTTTAG+TGG | - | chr3.3:49522550-49522569 | None:intergenic | 25.0% |
| !!! | TTTTAGTTAAAGGACTTGTT+TGG | + | chr3.3:49521700-49521719 | MS.gene08083:intron | 25.0% |
| AAAACCACGTATATTTAGGT+GGG | - | chr3.3:49520923-49520942 | None:intergenic | 30.0% | |
| AATTGGTCAAATGCATCTAA+AGG | + | chr3.3:49521614-49521633 | MS.gene08083:intron | 30.0% | |
| ATGATCAATGACAATGTAGT+TGG | - | chr3.3:49521469-49521488 | None:intergenic | 30.0% | |
| ATTTGTCCTTTAATCAGCTT+AGG | + | chr3.3:49522269-49522288 | MS.gene08083:intron | 30.0% | |
| CAAAAAGAAAATGAACACGA+CGG | - | chr3.3:49522138-49522157 | None:intergenic | 30.0% | |
| CAAAAGAAGTTAAAGGTCTA+GGG | + | chr3.3:49522015-49522034 | MS.gene08083:intron | 30.0% | |
| GAAACTTAAAGGATCACTTT+GGG | + | chr3.3:49521759-49521778 | MS.gene08083:intron | 30.0% | |
| GCTTAACCTTTATGCTAAAT+GGG | + | chr3.3:49522873-49522892 | MS.gene08083:CDS | 30.0% | |
| GGGAAAAACGAAAAACTTAA+AGG | + | chr3.3:49521779-49521798 | MS.gene08083:intron | 30.0% | |
| GGGAAAAACGAAAAACTTAA+AGG | - | chr3.3:49521798-49521779 | None:intergenic | 30.0% | |
| TAAAACCACGTATATTTAGG+TGG | - | chr3.3:49520924-49520943 | None:intergenic | 30.0% | |
| TAGCAACAAAATTGTGATAG+TGG | - | chr3.3:49520774-49520793 | None:intergenic | 30.0% | |
| TATGTGTTGAACAAAAAGAG+GGG | + | chr3.3:49521960-49521979 | MS.gene08083:intron | 30.0% | |
| TCAAAAGAAGTTAAAGGTCT+AGG | + | chr3.3:49522014-49522033 | MS.gene08083:intron | 30.0% | |
| TCTAATATGCTAGACATTAG+AGG | - | chr3.3:49521559-49521578 | None:intergenic | 30.0% | |
| TGAAACTTAAAGGATCACTT+TGG | + | chr3.3:49521758-49521777 | MS.gene08083:intron | 30.0% | |
| TGATCAATGACAATGTAGTT+GGG | - | chr3.3:49521468-49521487 | None:intergenic | 30.0% | |
| ! | ATAAAACGTTTTCCATCTTG+TGG | - | chr3.3:49522455-49522474 | None:intergenic | 30.0% |
| ! | ATGCAAATTTTGGATACTGA+GGG | - | chr3.3:49522633-49522652 | None:intergenic | 30.0% |
| ! | ATGTTTTCTATTTAGACGCA+TGG | + | chr3.3:49521000-49521019 | MS.gene08083:intron | 30.0% |
| ! | CAAAATTGCTCAATTTTGTC+CGG | - | chr3.3:49521301-49521320 | None:intergenic | 30.0% |
| ! | GAAACTTAAAGGACCATTTT+GGG | - | chr3.3:49521661-49521680 | None:intergenic | 30.0% |
| ! | GAAACTTAAAGGACTTGTTT+GGG | + | chr3.3:49521730-49521749 | MS.gene08083:intron | 30.0% |
| ! | GAGTGTCTAGAAAAGTTTTA+TGG | - | chr3.3:49521100-49521119 | None:intergenic | 30.0% |
| ! | GATGAGTTGTTAATTTGAGA+TGG | - | chr3.3:49520666-49520685 | None:intergenic | 30.0% |
| ! | GTTTTGTGGAAGAATTTGAT+GGG | + | chr3.3:49519933-49519952 | MS.gene08083:CDS | 30.0% |
| ! | TCAATATGAAGACACTTTTG+AGG | + | chr3.3:49520112-49520131 | MS.gene08083:CDS | 30.0% |
| ! | TGAAACTTAAAGGACCATTT+TGG | - | chr3.3:49521662-49521681 | None:intergenic | 30.0% |
| ! | TGAAACTTAAAGGACTTGTT+TGG | + | chr3.3:49521729-49521748 | MS.gene08083:intron | 30.0% |
| ! | TGTTTTGTGGAAGAATTTGA+TGG | + | chr3.3:49519932-49519951 | MS.gene08083:CDS | 30.0% |
| !! | AATTTGCTTTTATGTCTGAG+AGG | - | chr3.3:49521229-49521248 | None:intergenic | 30.0% |
| !! | CACTTTTGAGGATGTTAAAA+CGG | + | chr3.3:49520124-49520143 | MS.gene08083:CDS | 30.0% |
| !! | GTTTTTCGTTTTTCCCAAAA+TGG | + | chr3.3:49521645-49521664 | MS.gene08083:intron | 30.0% |
| !! | TGTTATTGGTTCATCAATGA+TGG | + | chr3.3:49519830-49519849 | MS.gene08083:CDS | 30.0% |
| !! | TTCTAGAATCAGAAGAAAGA+AGG | + | chr3.3:49521516-49521535 | MS.gene08083:intron | 30.0% |
| !!! | AGTACTTCATTTTTTGATCC+TGG | + | chr3.3:49522233-49522252 | MS.gene08083:intron | 30.0% |
| !!! | TTGGGACTTTTGAAACTTAA+AGG | + | chr3.3:49521719-49521738 | MS.gene08083:intron | 30.0% |
| !!! | TTGGGACTTTTGAAACTTAA+AGG | - | chr3.3:49521738-49521719 | None:intergenic | 30.0% |
| AAATCTTGGAGTAGAGACAT+TGG | - | chr3.3:49521429-49521448 | None:intergenic | 35.0% | |
| AAGGGGTCAAAAGAAGTTAA+AGG | + | chr3.3:49522008-49522027 | MS.gene08083:intron | 35.0% | |
| AAGTGTATGAGTGATGAAGA+AGG | - | chr3.3:49521877-49521896 | None:intergenic | 35.0% | |
| ATCCGTATCAGTGTCATATA+AGG | - | chr3.3:49520408-49520427 | None:intergenic | 35.0% | |
| ATGAGCTCAAAGCAAATGTT+GGG | - | chr3.3:49521378-49521397 | None:intergenic | 35.0% | |
| CACCTTATATGACACTGATA+CGG | + | chr3.3:49520403-49520422 | MS.gene08083:intron | 35.0% | |
| GAGACTAAGTAAAGAGACTT+AGG | - | chr3.3:49521264-49521283 | None:intergenic | 35.0% | |
| GGATACTGAGGGTAAAAAAA+TGG | - | chr3.3:49522622-49522641 | None:intergenic | 35.0% | |
| GGCTTAACCTTTATGCTAAA+TGG | + | chr3.3:49522872-49522891 | MS.gene08083:CDS | 35.0% | |
| GTATCAAACAAACCACAAGA+TGG | + | chr3.3:49522440-49522459 | MS.gene08083:CDS | 35.0% | |
| GTCTTGCGAATGGAAATATT+AGG | - | chr3.3:49522714-49522733 | None:intergenic | 35.0% | |
| GTGTAACCTAAGCTGATTAA+AGG | - | chr3.3:49522278-49522297 | None:intergenic | 35.0% | |
| TATGAGCTCAAAGCAAATGT+TGG | - | chr3.3:49521379-49521398 | None:intergenic | 35.0% | |
| TCCTTTGCTTCTTACAACTT+CGG | - | chr3.3:49520052-49520071 | None:intergenic | 35.0% | |
| TGATCCAAAACCTAGACAAA+CGG | + | chr3.3:49521901-49521920 | MS.gene08083:intron | 35.0% | |
| TTGAACAAAAAGAGGGGAAT+GGG | + | chr3.3:49521966-49521985 | MS.gene08083:intron | 35.0% | |
| ! | AAACGTTTTATCCGATTGCT+TGG | + | chr3.3:49522464-49522483 | MS.gene08083:CDS | 35.0% |
| ! | AACGTTTTATCCGATTGCTT+GGG | + | chr3.3:49522465-49522484 | MS.gene08083:CDS | 35.0% |
| ! | AGTAGTTCTTTTACTGATCC+TGG | + | chr3.3:49520002-49520021 | MS.gene08083:CDS | 35.0% |
| ! | ATGAATCTCAAGATTGGTTG+TGG | + | chr3.3:49519903-49519922 | MS.gene08083:CDS | 35.0% |
| ! | GATGCAAATTTTGGATACTG+AGG | - | chr3.3:49522634-49522653 | None:intergenic | 35.0% |
| ! | TAAAGGTCTAGGGTTCAAAT+CGG | + | chr3.3:49522025-49522044 | MS.gene08083:intron | 35.0% |
| ! | TGATGAAGAAGGTAGAGTTT+TGG | - | chr3.3:49521866-49521885 | None:intergenic | 35.0% |
| ! | TTCTTTTACTGATCCTGGAA+GGG | + | chr3.3:49520007-49520026 | MS.gene08083:CDS | 35.0% |
| !! | ATGAAAACTTGGAGTTGATG+AGG | + | chr3.3:49523036-49523055 | MS.gene08083:CDS | 35.0% |
| !! | CTTCTGATTCTAGAACACAA+GGG | - | chr3.3:49521511-49521530 | None:intergenic | 35.0% |
| !! | TCTTCTGATTCTAGAACACA+AGG | - | chr3.3:49521512-49521531 | None:intergenic | 35.0% |
| !! | TGAAAACTTGGAGTTGATGA+GGG | + | chr3.3:49523037-49523056 | MS.gene08083:CDS | 35.0% |
| !! | TTTGATGGGAAAGAAGCATT+TGG | + | chr3.3:49519947-49519966 | MS.gene08083:CDS | 35.0% |
| AGAAGCAAAGGAGTGAAGAT+AGG | + | chr3.3:49520060-49520079 | MS.gene08083:CDS | 40.0% | |
| AGCTTACTTGGTTGAGCTAA+GGG | + | chr3.3:49521990-49522009 | MS.gene08083:intron | 40.0% | |
| CAAATCGACTGAGATATACC+AGG | - | chr3.3:49522254-49522273 | None:intergenic | 40.0% | |
| CCTAATCCCTTTCGTCTTAA+GGG | + | chr3.3:49521070-49521089 | MS.gene08083:intron | 40.0% | |
| CCTGCTCTATAAGAACAAGA+AGG | - | chr3.3:49521331-49521350 | None:intergenic | 40.0% | |
| CCTTCTTGTTCTTATAGAGC+AGG | + | chr3.3:49521328-49521347 | MS.gene08083:intron | 40.0% | |
| CCTTGACCCATTTAGCATAA+AGG | - | chr3.3:49522882-49522901 | None:intergenic | 40.0% | |
| CCTTTATGCTAAATGGGTCA+AGG | + | chr3.3:49522879-49522898 | MS.gene08083:CDS | 40.0% | |
| GACAGCAGCTCAGAATTAAT+TGG | + | chr3.3:49523095-49523114 | MS.gene08083:CDS | 40.0% | |
| GACTCATGGAGACAGTAATA+TGG | + | chr3.3:49523063-49523082 | MS.gene08083:CDS | 40.0% | |
| GCTCAACTATTTCACGTACA+AGG | + | chr3.3:49520860-49520879 | MS.gene08083:CDS | 40.0% | |
| GGAAAACCCTTAAGACGAAA+GGG | - | chr3.3:49521079-49521098 | None:intergenic | 40.0% | |
| GTAGTTGGGTCAAACAACAT+TGG | - | chr3.3:49521454-49521473 | None:intergenic | 40.0% | |
| GTGGGAGCAATATCTGTTAT+TGG | + | chr3.3:49519816-49519835 | MS.gene08083:CDS | 40.0% | |
| GTTACCATTGTTAGTGAGCT+TGG | + | chr3.3:49520086-49520105 | MS.gene08083:CDS | 40.0% | |
| GTTGAACAAAAAGAGGGGAA+TGG | + | chr3.3:49521965-49521984 | MS.gene08083:intron | 40.0% | |
| TAGCTTACTTGGTTGAGCTA+AGG | + | chr3.3:49521989-49522008 | MS.gene08083:intron | 40.0% | |
| TCCTAATCCCTTTCGTCTTA+AGG | + | chr3.3:49521069-49521088 | MS.gene08083:intron | 40.0% | |
| TGAACCCACCTAAATATACG+TGG | + | chr3.3:49520916-49520935 | MS.gene08083:CDS | 40.0% | |
| TGCATCTGATTAACTCGAGT+CGG | + | chr3.3:49522648-49522667 | MS.gene08083:intron | 40.0% | |
| TGCTAAATGGGTCAAGGTAA+TGG | + | chr3.3:49522885-49522904 | MS.gene08083:intron | 40.0% | |
| TGGAAAACCCTTAAGACGAA+AGG | - | chr3.3:49521080-49521099 | None:intergenic | 40.0% | |
| ! | AAAAGGATTGCCGTTTGTCT+AGG | - | chr3.3:49521914-49521933 | None:intergenic | 40.0% |
| ! | CATGGTAAGTACGTGTGTTT+TGG | + | chr3.3:49521018-49521037 | MS.gene08083:intron | 40.0% |
| ! | CTGAAAGAGTGATGTTGACT+CGG | + | chr3.3:49522851-49522870 | MS.gene08083:CDS | 40.0% |
| ! | GTTCTTTTACTGATCCTGGA+AGG | + | chr3.3:49520006-49520025 | MS.gene08083:CDS | 40.0% |
| ! | TTTTATCCGATTGCTTGGGA+AGG | + | chr3.3:49522469-49522488 | MS.gene08083:CDS | 40.0% |
| !! | AAGAAGCATTTGGAAAAGCG+CGG | + | chr3.3:49519957-49519976 | MS.gene08083:CDS | 40.0% |
| !! | ATTGCCGTTTGTCTAGGTTT+TGG | - | chr3.3:49521908-49521927 | None:intergenic | 40.0% |
| !!! | GTTGTGGAGATGTTGTTTTG+TGG | + | chr3.3:49519919-49519938 | MS.gene08083:CDS | 40.0% |
| ACCACCAAGCTCACTAACAA+TGG | - | chr3.3:49520093-49520112 | None:intergenic | 45.0% | |
| ACCATTGTTAGTGAGCTTGG+TGG | + | chr3.3:49520089-49520108 | MS.gene08083:CDS | 45.0% | |
| AGTGCATCCACACACAAACA+TGG | - | chr3.3:49519870-49519889 | None:intergenic | 45.0% | |
| ATTTCACGTACAAGGCTGTG+AGG | + | chr3.3:49520868-49520887 | MS.gene08083:CDS | 45.0% | |
| CCCTTAAGACGAAAGGGATT+AGG | - | chr3.3:49521073-49521092 | None:intergenic | 45.0% | |
| GCCGAAGTTGTAAGAAGCAA+AGG | + | chr3.3:49520048-49520067 | MS.gene08083:CDS | 45.0% | |
| GCTTACTTGGTTGAGCTAAG+GGG | + | chr3.3:49521991-49522010 | MS.gene08083:intron | 45.0% | |
| TCAGAATCGAGTCTTGCGAA+TGG | - | chr3.3:49522724-49522743 | None:intergenic | 45.0% | |
| TGCGATCGAGCGATATCAAA+TGG | - | chr3.3:49521174-49521193 | None:intergenic | 45.0% | |
| TTACTGATCCTGGAAGGGAA+TGG | + | chr3.3:49520012-49520031 | MS.gene08083:CDS | 45.0% | |
| TTGTCCGGCAAGTGTTTGAA+CGG | - | chr3.3:49521286-49521305 | None:intergenic | 45.0% | |
| ! | AGAGTACCTTCCCAAGCAAT+CGG | - | chr3.3:49522478-49522497 | None:intergenic | 45.0% |
| !! | TCAATGATGGACTCACACAC+TGG | + | chr3.3:49519843-49519862 | MS.gene08083:CDS | 45.0% |
| AGGGGAATGGGTAGCTTACT+TGG | + | chr3.3:49521978-49521997 | MS.gene08083:intron | 50.0% | |
| CACTGGTCCATGTTTGTGTG+TGG | + | chr3.3:49519860-49519879 | MS.gene08083:CDS | 50.0% | |
| GTCTCCGTTCAAACACTTGC+CGG | + | chr3.3:49521279-49521298 | MS.gene08083:intron | 50.0% | |
| TCTGAGCTGCTGTCATCTGA+GGG | - | chr3.3:49523089-49523108 | None:intergenic | 50.0% | |
| TTCTGAGCTGCTGTCATCTG+AGG | - | chr3.3:49523090-49523109 | None:intergenic | 50.0% | |
| TTGACTCTCCATTCCCTTCC+AGG | - | chr3.3:49520023-49520042 | None:intergenic | 50.0% | |
| ! | AAGCATTTGGAAAAGCGCGG+CGG | + | chr3.3:49519960-49519979 | MS.gene08083:CDS | 50.0% |
| ! | GTTGATGAGGGAACGACTCA+TGG | + | chr3.3:49523049-49523068 | MS.gene08083:CDS | 50.0% |
| ! | CATTTGGAAAAGCGCGGCGG+CGG | + | chr3.3:49519963-49519982 | MS.gene08083:CDS | 60.0% |
| CGCGGCGGCGGAAGAACAAT+GGG | + | chr3.3:49519975-49519994 | MS.gene08083:CDS | 65.0% | |
| GCGGCGGCGGAAGAACAATG+GGG | + | chr3.3:49519976-49519995 | MS.gene08083:CDS | 65.0% | |
| GCGCGGCGGCGGAAGAACAA+TGG | + | chr3.3:49519974-49519993 | MS.gene08083:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.3 | gene | 49519813 | 49523121 | 49519813 | ID=MS.gene08083 |
| chr3.3 | mRNA | 49519813 | 49523121 | 49519813 | ID=MS.gene08083.t1;Parent=MS.gene08083 |
| chr3.3 | exon | 49519813 | 49520145 | 49519813 | ID=MS.gene08083.t1.exon1;Parent=MS.gene08083.t1 |
| chr3.3 | CDS | 49519813 | 49520145 | 49519813 | ID=cds.MS.gene08083.t1;Parent=MS.gene08083.t1 |
| chr3.3 | exon | 49520855 | 49520946 | 49520855 | ID=MS.gene08083.t1.exon2;Parent=MS.gene08083.t1 |
| chr3.3 | CDS | 49520855 | 49520946 | 49520855 | ID=cds.MS.gene08083.t1;Parent=MS.gene08083.t1 |
| chr3.3 | exon | 49522433 | 49522490 | 49522433 | ID=MS.gene08083.t1.exon3;Parent=MS.gene08083.t1 |
| chr3.3 | CDS | 49522433 | 49522490 | 49522433 | ID=cds.MS.gene08083.t1;Parent=MS.gene08083.t1 |
| chr3.3 | exon | 49522835 | 49522900 | 49522835 | ID=MS.gene08083.t1.exon4;Parent=MS.gene08083.t1 |
| chr3.3 | CDS | 49522835 | 49522900 | 49522835 | ID=cds.MS.gene08083.t1;Parent=MS.gene08083.t1 |
| chr3.3 | exon | 49522999 | 49523121 | 49522999 | ID=MS.gene08083.t1.exon5;Parent=MS.gene08083.t1 |
| chr3.3 | CDS | 49522999 | 49523121 | 49522999 | ID=cds.MS.gene08083.t1;Parent=MS.gene08083.t1 |
| Gene Sequence |
| Protein sequence |
