Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene70417.t1 | XP_003601575.2 | 73.9 | 517 | 15 | 3 | 1 | 397 | 136 | 652 | 2.90E-209 | 737.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene70417.t1 | F4IFC5 | 62.9 | 517 | 72 | 3 | 1 | 397 | 134 | 650 | 2.1e-184 | 646.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene70417.t1 | G7J9I7 | 73.9 | 517 | 15 | 3 | 1 | 397 | 136 | 652 | 2.1e-209 | 737.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049217 | MS.gene70417 | 0.801232 | 9.92E-49 | -1.69E-46 |
| MS.gene049351 | MS.gene70417 | 0.809102 | 2.23E-50 | -1.69E-46 |
| MS.gene049356 | MS.gene70417 | 0.835568 | 1.56E-56 | -1.69E-46 |
| MS.gene049369 | MS.gene70417 | 0.859872 | 3.06E-63 | -1.69E-46 |
| MS.gene049614 | MS.gene70417 | 0.810778 | 9.73E-51 | -1.69E-46 |
| MS.gene049805 | MS.gene70417 | 0.819643 | 1.04E-52 | -1.69E-46 |
| MS.gene050397 | MS.gene70417 | 0.819587 | 1.07E-52 | -1.69E-46 |
| MS.gene050432 | MS.gene70417 | 0.80838 | 3.19E-50 | -1.69E-46 |
| MS.gene050444 | MS.gene70417 | 0.821107 | 4.81E-53 | -1.69E-46 |
| MS.gene050593 | MS.gene70417 | 0.808962 | 2.39E-50 | -1.69E-46 |
| MS.gene050767 | MS.gene70417 | 0.809327 | 2.00E-50 | -1.69E-46 |
| MS.gene050770 | MS.gene70417 | 0.815226 | 1.03E-51 | -1.69E-46 |
| MS.gene050772 | MS.gene70417 | 0.822939 | 1.81E-53 | -1.69E-46 |
| MS.gene050809 | MS.gene70417 | -0.804254 | 2.36E-49 | -1.69E-46 |
| MS.gene050971 | MS.gene70417 | 0.815871 | 7.40E-52 | -1.69E-46 |
| MS.gene05105 | MS.gene70417 | 0.804182 | 2.44E-49 | -1.69E-46 |
| MS.gene051228 | MS.gene70417 | 0.859242 | 4.74E-63 | -1.69E-46 |
| MS.gene051617 | MS.gene70417 | 0.800146 | 1.65E-48 | -1.69E-46 |
| MS.gene051666 | MS.gene70417 | 0.826108 | 3.25E-54 | -1.69E-46 |
| MS.gene051692 | MS.gene70417 | 0.81672 | 4.78E-52 | -1.69E-46 |
| MS.gene051858 | MS.gene70417 | 0.84485 | 5.86E-59 | -1.69E-46 |
| MS.gene051874 | MS.gene70417 | 0.823345 | 1.46E-53 | -1.69E-46 |
| MS.gene052078 | MS.gene70417 | 0.81128 | 7.58E-51 | -1.69E-46 |
| MS.gene052188 | MS.gene70417 | 0.828063 | 1.11E-54 | -1.69E-46 |
| MS.gene052271 | MS.gene70417 | 0.80533 | 1.41E-49 | -1.69E-46 |
| MS.gene052290 | MS.gene70417 | 0.829428 | 5.18E-55 | -1.69E-46 |
| MS.gene052310 | MS.gene70417 | 0.825613 | 4.26E-54 | -1.69E-46 |
| MS.gene052322 | MS.gene70417 | 0.807259 | 5.52E-50 | -1.69E-46 |
| MS.gene052379 | MS.gene70417 | 0.838038 | 3.65E-57 | -1.69E-46 |
| MS.gene052421 | MS.gene70417 | 0.801984 | 6.96E-49 | -1.69E-46 |
| MS.gene052484 | MS.gene70417 | 0.808204 | 3.47E-50 | -1.69E-46 |
| MS.gene052805 | MS.gene70417 | -0.803752 | 3.00E-49 | -1.69E-46 |
| MS.gene052870 | MS.gene70417 | 0.859526 | 3.89E-63 | -1.69E-46 |
| MS.gene052872 | MS.gene70417 | 0.853591 | 2.16E-61 | -1.69E-46 |
| MS.gene053009 | MS.gene70417 | 0.820038 | 8.47E-53 | -1.69E-46 |
| MS.gene053103 | MS.gene70417 | 0.830888 | 2.28E-55 | -1.69E-46 |
| MS.gene053104 | MS.gene70417 | 0.832729 | 8.01E-56 | -1.69E-46 |
| MS.gene053209 | MS.gene70417 | 0.819153 | 1.35E-52 | -1.69E-46 |
| MS.gene053322 | MS.gene70417 | 0.826475 | 2.66E-54 | -1.69E-46 |
| MS.gene053384 | MS.gene70417 | 0.877995 | 4.02E-69 | -1.69E-46 |
| MS.gene053449 | MS.gene70417 | 0.8617 | 8.53E-64 | -1.69E-46 |
| MS.gene053813 | MS.gene70417 | 0.804019 | 2.64E-49 | -1.69E-46 |
| MS.gene053824 | MS.gene70417 | 0.810398 | 1.18E-50 | -1.69E-46 |
| MS.gene053912 | MS.gene70417 | 0.81374 | 2.20E-51 | -1.69E-46 |
| MS.gene053916 | MS.gene70417 | 0.847993 | 8.13E-60 | -1.69E-46 |
| MS.gene054123 | MS.gene70417 | 0.817875 | 2.63E-52 | -1.69E-46 |
| MS.gene054543 | MS.gene70417 | 0.809882 | 1.52E-50 | -1.69E-46 |
| MS.gene054642 | MS.gene70417 | 0.804076 | 2.57E-49 | -1.69E-46 |
| MS.gene05494 | MS.gene70417 | 0.834385 | 3.09E-56 | -1.69E-46 |
| MS.gene054955 | MS.gene70417 | 0.837634 | 4.63E-57 | -1.69E-46 |
| MS.gene05505 | MS.gene70417 | 0.845886 | 3.07E-59 | -1.69E-46 |
| MS.gene055206 | MS.gene70417 | 0.815271 | 1.01E-51 | -1.69E-46 |
| MS.gene055224 | MS.gene70417 | 0.805749 | 1.15E-49 | -1.69E-46 |
| MS.gene055254 | MS.gene70417 | 0.817477 | 3.23E-52 | -1.69E-46 |
| MS.gene055277 | MS.gene70417 | 0.8155 | 8.96E-52 | -1.69E-46 |
| MS.gene055397 | MS.gene70417 | 0.830411 | 2.98E-55 | -1.69E-46 |
| MS.gene055722 | MS.gene70417 | 0.827784 | 1.29E-54 | -1.69E-46 |
| MS.gene05592 | MS.gene70417 | 0.867125 | 1.72E-65 | -1.69E-46 |
| MS.gene055941 | MS.gene70417 | 0.832097 | 1.15E-55 | -1.69E-46 |
| MS.gene056410 | MS.gene70417 | 0.811944 | 5.43E-51 | -1.69E-46 |
| MS.gene056511 | MS.gene70417 | 0.831867 | 1.31E-55 | -1.69E-46 |
| MS.gene056609 | MS.gene70417 | 0.86408 | 1.57E-64 | -1.69E-46 |
| MS.gene056719 | MS.gene70417 | 0.807439 | 5.05E-50 | -1.69E-46 |
| MS.gene056897 | MS.gene70417 | 0.830632 | 2.63E-55 | -1.69E-46 |
| MS.gene056903 | MS.gene70417 | 0.802457 | 5.56E-49 | -1.69E-46 |
| MS.gene056947 | MS.gene70417 | 0.803423 | 3.51E-49 | -1.69E-46 |
| MS.gene057123 | MS.gene70417 | 0.806782 | 6.96E-50 | -1.69E-46 |
| MS.gene057129 | MS.gene70417 | 0.827223 | 1.76E-54 | -1.69E-46 |
| MS.gene057146 | MS.gene70417 | 0.806171 | 9.37E-50 | -1.69E-46 |
| MS.gene057331 | MS.gene70417 | 0.807582 | 4.71E-50 | -1.69E-46 |
| MS.gene05735 | MS.gene70417 | 0.826437 | 2.71E-54 | -1.69E-46 |
| MS.gene057416 | MS.gene70417 | 0.804931 | 1.70E-49 | -1.69E-46 |
| MS.gene057734 | MS.gene70417 | 0.800016 | 1.76E-48 | -1.69E-46 |
| MS.gene057926 | MS.gene70417 | 0.873398 | 1.52E-67 | -1.69E-46 |
| MS.gene057927 | MS.gene70417 | 0.815752 | 7.87E-52 | -1.69E-46 |
| MS.gene058006 | MS.gene70417 | 0.852101 | 5.76E-61 | -1.69E-46 |
| MS.gene058082 | MS.gene70417 | 0.817852 | 2.66E-52 | -1.69E-46 |
| MS.gene05811 | MS.gene70417 | 0.801519 | 8.67E-49 | -1.69E-46 |
| MS.gene058293 | MS.gene70417 | 0.809126 | 2.21E-50 | -1.69E-46 |
| MS.gene058323 | MS.gene70417 | 0.804065 | 2.58E-49 | -1.69E-46 |
| MS.gene058588 | MS.gene70417 | 0.813773 | 2.16E-51 | -1.69E-46 |
| MS.gene058660 | MS.gene70417 | 0.821235 | 4.50E-53 | -1.69E-46 |
| MS.gene058723 | MS.gene70417 | 0.812464 | 4.18E-51 | -1.69E-46 |
| MS.gene058928 | MS.gene70417 | 0.81311 | 3.02E-51 | -1.69E-46 |
| MS.gene05913 | MS.gene70417 | 0.811492 | 6.81E-51 | -1.69E-46 |
| MS.gene059305 | MS.gene70417 | 0.812183 | 4.82E-51 | -1.69E-46 |
| MS.gene05934 | MS.gene70417 | 0.81921 | 1.31E-52 | -1.69E-46 |
| MS.gene059366 | MS.gene70417 | 0.818988 | 1.47E-52 | -1.69E-46 |
| MS.gene059536 | MS.gene70417 | 0.821266 | 4.42E-53 | -1.69E-46 |
| MS.gene05959 | MS.gene70417 | 0.829316 | 5.51E-55 | -1.69E-46 |
| MS.gene059674 | MS.gene70417 | 0.808035 | 3.77E-50 | -1.69E-46 |
| MS.gene059676 | MS.gene70417 | 0.826274 | 2.97E-54 | -1.69E-46 |
| MS.gene059688 | MS.gene70417 | 0.816783 | 4.63E-52 | -1.69E-46 |
| MS.gene059692 | MS.gene70417 | 0.815559 | 8.69E-52 | -1.69E-46 |
| MS.gene059695 | MS.gene70417 | 0.807698 | 4.45E-50 | -1.69E-46 |
| MS.gene059708 | MS.gene70417 | 0.820572 | 6.39E-53 | -1.69E-46 |
| MS.gene059711 | MS.gene70417 | 0.821051 | 4.96E-53 | -1.69E-46 |
| MS.gene059807 | MS.gene70417 | 0.819044 | 1.43E-52 | -1.69E-46 |
| MS.gene05986 | MS.gene70417 | 0.813168 | 2.93E-51 | -1.69E-46 |
| MS.gene059902 | MS.gene70417 | 0.836246 | 1.05E-56 | -1.69E-46 |
| MS.gene059960 | MS.gene70417 | 0.83039 | 3.02E-55 | -1.69E-46 |
| MS.gene060193 | MS.gene70417 | 0.809573 | 1.77E-50 | -1.69E-46 |
| MS.gene060804 | MS.gene70417 | 0.85279 | 3.66E-61 | -1.69E-46 |
| MS.gene060818 | MS.gene70417 | 0.887366 | 1.52E-72 | -1.69E-46 |
| MS.gene060832 | MS.gene70417 | 0.836099 | 1.14E-56 | -1.69E-46 |
| MS.gene060837 | MS.gene70417 | 0.833461 | 5.26E-56 | -1.69E-46 |
| MS.gene061041 | MS.gene70417 | 0.865393 | 6.10E-65 | -1.69E-46 |
| MS.gene061051 | MS.gene70417 | -0.812615 | 3.88E-51 | -1.69E-46 |
| MS.gene061200 | MS.gene70417 | 0.836416 | 9.48E-57 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene70417.t1 | MTR_3g083180 | 87.970 | 266 | 15 | 2 | 1 | 249 | 136 | 401 | 2.28e-167 | 484 |
| MS.gene70417.t1 | MTR_3g083180 | 97.403 | 154 | 4 | 0 | 244 | 397 | 499 | 652 | 1.26e-100 | 312 |
| MS.gene70417.t1 | MTR_5g034820 | 35.741 | 263 | 148 | 6 | 3 | 249 | 204 | 461 | 1.51e-43 | 161 |
| MS.gene70417.t1 | MTR_5g034820 | 37.415 | 147 | 90 | 2 | 244 | 388 | 558 | 704 | 8.65e-25 | 107 |
| MS.gene70417.t1 | MTR_3g077340 | 36.066 | 122 | 59 | 5 | 15 | 135 | 98 | 201 | 5.47e-11 | 62.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene70417.t1 | AT2G04842 | 77.068 | 266 | 44 | 2 | 1 | 249 | 134 | 399 | 1.98e-148 | 435 |
| MS.gene70417.t1 | AT2G04842 | 79.221 | 154 | 32 | 0 | 244 | 397 | 497 | 650 | 9.84e-83 | 266 |
| MS.gene70417.t1 | AT2G04842 | 77.068 | 266 | 44 | 2 | 1 | 249 | 134 | 399 | 1.98e-148 | 435 |
| MS.gene70417.t1 | AT2G04842 | 79.221 | 154 | 32 | 0 | 244 | 397 | 497 | 650 | 9.84e-83 | 266 |
| MS.gene70417.t1 | AT5G26830 | 38.735 | 253 | 134 | 5 | 10 | 246 | 209 | 456 | 6.55e-50 | 179 |
| MS.gene70417.t1 | AT5G26830 | 38.776 | 147 | 88 | 2 | 244 | 388 | 556 | 702 | 7.08e-26 | 110 |
| MS.gene70417.t1 | AT1G17960 | 36.129 | 155 | 94 | 2 | 244 | 393 | 229 | 383 | 5.79e-23 | 99.8 |
| MS.gene70417.t1 | AT1G17960 | 36.129 | 155 | 94 | 2 | 244 | 393 | 302 | 456 | 9.47e-23 | 100 |
| MS.gene70417.t1 | AT1G18130 | 34.641 | 153 | 94 | 4 | 243 | 393 | 15 | 163 | 9.72e-19 | 83.2 |
Find 81 sgRNAs with CRISPR-Local
Find 273 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAATTGTCCTTATCATATTT+TGG | 0.167424 | 3.1:+66049013 | MS.gene70417:CDS |
| ACCATACAAGATGGAGATTT+TGG | 0.189747 | 3.1:+66047339 | MS.gene70417:CDS |
| CCCATCACAATTTATTATAT+TGG | 0.226248 | 3.1:+66047379 | MS.gene70417:CDS |
| GGATCCTTGGAAAGATTCTT+TGG | 0.273179 | 3.1:+66050536 | MS.gene70417:CDS |
| CCAATGCTGCAAAGGATATA+TGG | 0.287726 | 3.1:+66048468 | MS.gene70417:CDS |
| TCCTTGAAGGCGGGGAGTGG+TGG | 0.306185 | 3.1:+66048340 | MS.gene70417:intron |
| AGTCTATTGCTGGTGCTTAC+TGG | 0.312521 | 3.1:+66048427 | MS.gene70417:CDS |
| CCTGTTAGGGTAGCAGAATT+AGG | 0.317000 | 3.1:+66049071 | MS.gene70417:CDS |
| CCTAATTCTGCTACCCTAAC+AGG | 0.323506 | 3.1:-66049071 | None:intergenic |
| TTGGAAGATCAGTGGTCATT+TGG | 0.329279 | 3.1:+66048923 | MS.gene70417:CDS |
| AAGCTAAACGTCGGGATCAT+AGG | 0.344843 | 3.1:+66048544 | MS.gene70417:CDS |
| TCTGCATTTCTTATGAGCTT+TGG | 0.360438 | 3.1:-66050811 | None:intergenic |
| AGGATCCAAGCACTGCTCTA+TGG | 0.361693 | 3.1:-66050520 | None:intergenic |
| GGTAAAATTCGAGCTTGTAT+TGG | 0.363721 | 3.1:-66050605 | None:intergenic |
| CCATATATCCTTTGCAGCAT+TGG | 0.378495 | 3.1:-66048468 | None:intergenic |
| AAAACAGAAAATTCCATTGA+TGG | 0.380582 | 3.1:+66050834 | MS.gene70417:CDS |
| TAGAGCAGTGCTTGGATCCT+TGG | 0.381818 | 3.1:+66050523 | MS.gene70417:CDS |
| ACTGCTCTATGGATCATTAT+AGG | 0.385013 | 3.1:-66050509 | None:intergenic |
| TCCAAAATCTCCATCTTGTA+TGG | 0.388459 | 3.1:-66047340 | None:intergenic |
| TGAAGCTCATAGAAGAATAT+TGG | 0.390948 | 3.1:+66047306 | MS.gene70417:CDS |
| GTTACCTGGGCATCAGTAAC+AGG | 0.414807 | 3.1:-66050626 | None:intergenic |
| GTTGAACTTGAGTCTATTGC+TGG | 0.414953 | 3.1:+66048417 | MS.gene70417:CDS |
| AAACAGTTACCGTTAGATCT+AGG | 0.416384 | 3.1:+66050887 | MS.gene70417:CDS |
| TGTATTGGAGAAAGCCATAA+TGG | 0.417915 | 3.1:-66050590 | None:intergenic |
| TCTAGGTTTGGTGGGGAGCT+TGG | 0.423667 | 3.1:+66050904 | MS.gene70417:CDS |
| ATGTGGCAAAAGCTGATCTT+TGG | 0.426316 | 3.1:+66048904 | MS.gene70417:CDS |
| TTGTATACCAAAATATGATA+AGG | 0.433599 | 3.1:-66049020 | None:intergenic |
| CCTTGAAGGCGGGGAGTGGT+GGG | 0.437435 | 3.1:+66048341 | MS.gene70417:intron |
| GGACCTCATGTTGAATCTAC+TGG | 0.441354 | 3.1:+66048375 | MS.gene70417:CDS |
| CCGTTAGATCTAGGTTTGGT+GGG | 0.445581 | 3.1:+66050896 | MS.gene70417:CDS |
| TGAAACCTCTAACGCGGAAA+AGG | 0.462420 | 3.1:-66049133 | None:intergenic |
| ACCAATATAATAAATTGTGA+TGG | 0.469585 | 3.1:-66047380 | None:intergenic |
| TTGAAACTTCTTCTCTTACA+AGG | 0.474232 | 3.1:-66047279 | None:intergenic |
| ATATGATAAGGACAATTCAT+TGG | 0.481092 | 3.1:-66049008 | None:intergenic |
| ATTCCATTGATGGCTGTTGT+AGG | 0.483364 | 3.1:+66050844 | MS.gene70417:CDS |
| GTTTATAGATATGAACTGTC+TGG | 0.493569 | 3.1:+66049098 | MS.gene70417:CDS |
| GTTACCGTTAGATCTAGGTT+TGG | 0.501718 | 3.1:+66050892 | MS.gene70417:CDS |
| TGAAACTTCTTCTCTTACAA+GGG | 0.509459 | 3.1:-66047278 | None:intergenic |
| CAAAGAAGAAGCTAAACGTC+GGG | 0.511632 | 3.1:+66048536 | MS.gene70417:CDS |
| ACAAATCAAGATCTTGTCCT+AGG | 0.517714 | 3.1:-66048569 | None:intergenic |
| AAAGGAAGCGTCATTCCTAT+CGG | 0.520757 | 3.1:+66049042 | MS.gene70417:CDS |
| TTTACCTGTTACTGATGCCC+AGG | 0.525812 | 3.1:+66050622 | MS.gene70417:CDS |
| AATGTGTATCATAGTGATGT+TGG | 0.526267 | 3.1:-66050979 | None:intergenic |
| TGGTCATTTGGACTTCTACA+AGG | 0.528039 | 3.1:+66048935 | MS.gene70417:CDS |
| CCAATATAATAAATTGTGAT+GGG | 0.530976 | 3.1:-66047379 | None:intergenic |
| CGTTAGATCTAGGTTTGGTG+GGG | 0.533169 | 3.1:+66050897 | MS.gene70417:CDS |
| ATGTGTATCATAGTGATGTT+GGG | 0.539155 | 3.1:-66050978 | None:intergenic |
| GCACCTACAACAGCCATCAA+TGG | 0.541514 | 3.1:-66050847 | None:intergenic |
| AAGGAAGCGTCATTCCTATC+GGG | 0.545437 | 3.1:+66049043 | MS.gene70417:CDS |
| AAAAGAAACCAATGCTGCAA+AGG | 0.547530 | 3.1:+66048460 | MS.gene70417:CDS |
| ACCGTTAGATCTAGGTTTGG+TGG | 0.549435 | 3.1:+66050895 | MS.gene70417:CDS |
| AATAAAATCATCAATTGTCA+TGG | 0.549490 | 3.1:-66050929 | None:intergenic |
| GAGTGGTGGGACCTATGTGC+TGG | 0.554699 | 3.1:+66048354 | MS.gene70417:CDS |
| ATGATCCATAGAGCAGTGCT+TGG | 0.558727 | 3.1:+66050515 | MS.gene70417:CDS |
| CTCCATGACAAACCTCAGCT+CGG | 0.569887 | 3.1:-66050780 | None:intergenic |
| CGTCGGGATCATAGGCGCCT+AGG | 0.579199 | 3.1:+66048552 | MS.gene70417:CDS |
| AAAGGATATATGGTACTGCA+TGG | 0.580353 | 3.1:+66048478 | MS.gene70417:CDS |
| AAGCCATAATGGAAAATCAC+CGG | 0.586629 | 3.1:-66050579 | None:intergenic |
| CAACATGAGGTCCAGCACAT+AGG | 0.588542 | 3.1:-66048365 | None:intergenic |
| CTGAGGTTTGTCATGGAGAG+CGG | 0.592957 | 3.1:+66050785 | MS.gene70417:CDS |
| GAAACTTCTTCTCTTACAAG+GGG | 0.600645 | 3.1:-66047277 | None:intergenic |
| TTTGAATGAACCATACAAGA+TGG | 0.602855 | 3.1:+66047330 | MS.gene70417:CDS |
| CCCACCAAACCTAGATCTAA+CGG | 0.604671 | 3.1:-66050896 | None:intergenic |
| GTTCTTATAGAGCATTATGC+CGG | 0.605410 | 3.1:+66050560 | MS.gene70417:CDS |
| AGCAATAGACTCAAGTTCAA+CGG | 0.609015 | 3.1:-66048415 | None:intergenic |
| TTTCCAGTAGATTCAACATG+AGG | 0.609326 | 3.1:-66048378 | None:intergenic |
| AAAATATGGCATCCGAGCTG+AGG | 0.610578 | 3.1:+66050768 | MS.gene70417:CDS |
| AAGGATATATGGTACTGCAT+GGG | 0.617021 | 3.1:+66048479 | MS.gene70417:CDS |
| ATCCGAGCTGAGGTTTGTCA+TGG | 0.621334 | 3.1:+66050778 | MS.gene70417:CDS |
| AACACCAAAGAATCTTTCCA+AGG | 0.623750 | 3.1:-66050540 | None:intergenic |
| ATTGCTGGTGCTTACTGGAG+AGG | 0.632091 | 3.1:+66048432 | MS.gene70417:CDS |
| TCAAAGAAGAAGCTAAACGT+CGG | 0.632292 | 3.1:+66048535 | MS.gene70417:CDS |
| GAACTGTCTGGAAGTTTACA+CGG | 0.636774 | 3.1:+66049110 | MS.gene70417:CDS |
| CCTAACAGGAAAATCCCGAT+AGG | 0.646763 | 3.1:-66049057 | None:intergenic |
| GATGGCTGTTGTAGGTGCAA+AGG | 0.659873 | 3.1:+66050852 | MS.gene70417:CDS |
| GCTGATCTTTGGAAGATCAG+TGG | 0.662223 | 3.1:+66048915 | MS.gene70417:CDS |
| CCTGTGTGAAACCTCTAACG+CGG | 0.672275 | 3.1:-66049139 | None:intergenic |
| TCTATTGTATACACCACATG+TGG | 0.675720 | 3.1:+66048887 | MS.gene70417:CDS |
| CCGCGTTAGAGGTTTCACAC+AGG | 0.685509 | 3.1:+66049139 | MS.gene70417:CDS |
| CAATTAGCTTGAATACTGCG+AGG | 0.687613 | 3.1:+66050726 | MS.gene70417:intron |
| TATGTGATGTCAAAACGCTG+TGG | 0.747561 | 3.1:-66050458 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTCATAATAAAATAAGTAAT+GGG | - | chr3.1:66049347-66049366 | None:intergenic | 10.0% |
| !! | TTTCATAATAAAATAAGTAA+TGG | - | chr3.1:66049348-66049367 | None:intergenic | 10.0% |
| !!! | TTATTTTATTATGAAATCAA+TGG | + | chr3.1:66049352-66049371 | MS.gene70417:intron | 10.0% |
| !! | AGAAAAACAAAATGTTATAT+GGG | - | chr3.1:66050056-66050075 | None:intergenic | 15.0% |
| !! | TAGAAAAACAAAATGTTATA+TGG | - | chr3.1:66050057-66050076 | None:intergenic | 15.0% |
| !! | TATGATCATAGTTAATTAAT+GGG | + | chr3.1:66050686-66050705 | MS.gene70417:intron | 15.0% |
| !!! | ATCAAAATAAATTTGTTAAC+CGG | + | chr3.1:66047745-66047764 | MS.gene70417:intron | 15.0% |
| !!! | CTTTGAAATATTAAAACAAT+AGG | + | chr3.1:66049814-66049833 | MS.gene70417:intron | 15.0% |
| !!! | TAACAAATTTATTTTGATCA+AGG | - | chr3.1:66047743-66047762 | None:intergenic | 15.0% |
| !!! | TATTTTCAATTAATCAATAC+AGG | - | chr3.1:66049989-66050008 | None:intergenic | 15.0% |
| !!! | TTTTAATTCATTTCTTTAAG+AGG | + | chr3.1:66049432-66049451 | MS.gene70417:intron | 15.0% |
| !!! | TTTTATTAGTAGAATAAAGT+TGG | + | chr3.1:66050945-66050964 | MS.gene70417:CDS | 15.0% |
| !! | AAAACTAACCTATCTTATAT+GGG | - | chr3.1:66050022-66050041 | None:intergenic | 20.0% |
| !! | AATAAAATCATCAATTGTCA+TGG | - | chr3.1:66050932-66050951 | None:intergenic | 20.0% |
| !! | ACCAATATAATAAATTGTGA+TGG | - | chr3.1:66047383-66047402 | None:intergenic | 20.0% |
| !! | ATGAGATAAATTTATCTACA+CGG | + | chr3.1:66049586-66049605 | MS.gene70417:intron | 20.0% |
| !! | CAAAATTAGGAATCATAAAA+AGG | - | chr3.1:66048693-66048712 | None:intergenic | 20.0% |
| !! | CCAATATAATAAATTGTGAT+GGG | - | chr3.1:66047382-66047401 | None:intergenic | 20.0% |
| !! | CCTCATTAGATTTAAAAAAT+GGG | + | chr3.1:66050147-66050166 | MS.gene70417:intron | 20.0% |
| !! | GTATGATCATAGTTAATTAA+TGG | + | chr3.1:66050685-66050704 | MS.gene70417:intron | 20.0% |
| !! | TACATAACTACCAAATATAA+AGG | - | chr3.1:66047153-66047172 | None:intergenic | 20.0% |
| !! | TCCTCATTAGATTTAAAAAA+TGG | + | chr3.1:66050146-66050165 | MS.gene70417:intron | 20.0% |
| !! | TTCTTCTATTAAATTTATGC+AGG | + | chr3.1:66048762-66048781 | MS.gene70417:intron | 20.0% |
| !! | TTGTATACCAAAATATGATA+AGG | - | chr3.1:66049023-66049042 | None:intergenic | 20.0% |
| !!! | ATCATATTTTGGTATACAAA+AGG | + | chr3.1:66049024-66049043 | MS.gene70417:CDS | 20.0% |
| !!! | ATTTTGTTGTAAACAAAATG+AGG | - | chr3.1:66047820-66047839 | None:intergenic | 20.0% |
| !!! | CATATTTTTAAAGTCAGTAA+TGG | + | chr3.1:66048004-66048023 | MS.gene70417:intron | 20.0% |
| !!! | CATTACTGACTTTAAAAATA+TGG | - | chr3.1:66048006-66048025 | None:intergenic | 20.0% |
| !!! | TTATTTCTTATATTGTCTGT+AGG | + | chr3.1:66047231-66047250 | MS.gene70417:intron | 20.0% |
| !!! | TTTATGATTCCTAATTTTGT+GGG | + | chr3.1:66048694-66048713 | MS.gene70417:intron | 20.0% |
| !!! | TTTTATGATTCCTAATTTTG+TGG | + | chr3.1:66048693-66048712 | MS.gene70417:intron | 20.0% |
| ! | AAAACAGAAAATTCCATTGA+TGG | + | chr3.1:66050834-66050853 | MS.gene70417:CDS | 25.0% |
| ! | AAAGAAAAAGTTATTGTCTG+AGG | + | chr3.1:66048278-66048297 | MS.gene70417:intron | 25.0% |
| ! | AAATTGCGATAATGTTTCTT+CGG | - | chr3.1:66049554-66049573 | None:intergenic | 25.0% |
| ! | AACATATGTGTCTATTATTG+AGG | - | chr3.1:66047671-66047690 | None:intergenic | 25.0% |
| ! | ACATATGTGTCTATTATTGA+GGG | - | chr3.1:66047670-66047689 | None:intergenic | 25.0% |
| ! | ACCAACAAACTGAAAAAATA+TGG | + | chr3.1:66050754-66050773 | MS.gene70417:CDS | 25.0% |
| ! | ATATGATAAGGACAATTCAT+TGG | - | chr3.1:66049011-66049030 | None:intergenic | 25.0% |
| ! | ATCTAATAGCTTAAGCTTTA+AGG | + | chr3.1:66050257-66050276 | MS.gene70417:intron | 25.0% |
| ! | ATTTATGTACCCACAAAATT+AGG | - | chr3.1:66048706-66048725 | None:intergenic | 25.0% |
| ! | CAAAAGTAAGAGATTTAAGA+CGG | - | chr3.1:66050310-66050329 | None:intergenic | 25.0% |
| ! | CCCATCACAATTTATTATAT+TGG | + | chr3.1:66047379-66047398 | MS.gene70417:CDS | 25.0% |
| ! | GAAAACTAACCTATCTTATA+TGG | - | chr3.1:66050023-66050042 | None:intergenic | 25.0% |
| ! | TGAATTATGCTACATATACA+TGG | + | chr3.1:66047197-66047216 | MS.gene70417:intron | 25.0% |
| ! | TTAAAATCAACCTGTTTAAG+TGG | - | chr3.1:66050434-66050453 | None:intergenic | 25.0% |
| ! | TTAAAGCTTAAGCTATTAGA+TGG | - | chr3.1:66050258-66050277 | None:intergenic | 25.0% |
| ! | TTCTATTAAATTTATGCAGG+AGG | + | chr3.1:66048765-66048784 | MS.gene70417:intron | 25.0% |
| !! | AGACACATAATTGAAGATTT+TGG | + | chr3.1:66048835-66048854 | MS.gene70417:intron | 25.0% |
| !! | ATTACACATTAAGGTATCAT+AGG | - | chr3.1:66049378-66049397 | None:intergenic | 25.0% |
| !! | GAATTGTCCTTATCATATTT+TGG | + | chr3.1:66049013-66049032 | MS.gene70417:CDS | 25.0% |
| !! | TAAATGCAGAAACTTTGAAA+AGG | - | chr3.1:66049410-66049429 | None:intergenic | 25.0% |
| !!! | AAAACAATAGGTTTTTGAAG+TGG | + | chr3.1:66049826-66049845 | MS.gene70417:intron | 25.0% |
| !!! | CCCATTTTTTAAATCTAATG+AGG | - | chr3.1:66050150-66050169 | None:intergenic | 25.0% |
| !!! | TAAATCTCTTACTTTTGTCA+GGG | + | chr3.1:66050313-66050332 | MS.gene70417:intron | 25.0% |
| !!! | TCTTGATTTGTTTTCTTTAC+AGG | + | chr3.1:66048581-66048600 | MS.gene70417:CDS | 25.0% |
| !!! | TTAAATCTCTTACTTTTGTC+AGG | + | chr3.1:66050312-66050331 | MS.gene70417:intron | 25.0% |
| !!! | TTCAAAGAACTTTGAAGTTA+AGG | - | chr3.1:66049801-66049820 | None:intergenic | 25.0% |
| !!! | TTCTTATCCTTGTTTTGATA+TGG | + | chr3.1:66047960-66047979 | MS.gene70417:intron | 25.0% |
| AAAAAAGTTCACATAGAACG+TGG | + | chr3.1:66048858-66048877 | MS.gene70417:CDS | 30.0% | |
| AAACTATTTGTGAACTTGTG+GGG | - | chr3.1:66047885-66047904 | None:intergenic | 30.0% | |
| AAAGATAGATGTCAAGATTG+AGG | + | chr3.1:66049731-66049750 | MS.gene70417:intron | 30.0% | |
| AATAGTTACTACATGCAGAA+TGG | - | chr3.1:66050391-66050410 | None:intergenic | 30.0% | |
| AATCATGCCATATCAAAACA+AGG | - | chr3.1:66047970-66047989 | None:intergenic | 30.0% | |
| AGAACCAAAGAATTATTCCA+TGG | - | chr3.1:66047911-66047930 | None:intergenic | 30.0% | |
| ATGACTATTATACACATGCA+TGG | - | chr3.1:66047536-66047555 | None:intergenic | 30.0% | |
| CAAACTATTTGTGAACTTGT+GGG | - | chr3.1:66047886-66047905 | None:intergenic | 30.0% | |
| CACAAGTTCACAAATAGTTT+GGG | + | chr3.1:66047885-66047904 | MS.gene70417:intron | 30.0% | |
| CATGTGTATAATAGTCATTC+TGG | + | chr3.1:66047538-66047557 | MS.gene70417:intron | 30.0% | |
| CTATGCAGTATTACACATTA+AGG | - | chr3.1:66049387-66049406 | None:intergenic | 30.0% | |
| GAAAACTGATAAGAGATAGA+AGG | - | chr3.1:66047408-66047427 | None:intergenic | 30.0% | |
| GAAGAAACATTATCGCAATT+TGG | + | chr3.1:66049553-66049572 | MS.gene70417:intron | 30.0% | |
| GAGAGATAATCGTTATTGTA+TGG | + | chr3.1:66047565-66047584 | MS.gene70417:intron | 30.0% | |
| GTTGAAGTTTAAAAGCTAGT+GGG | + | chr3.1:66047447-66047466 | MS.gene70417:intron | 30.0% | |
| GTTTATAGATATGAACTGTC+TGG | + | chr3.1:66049098-66049117 | MS.gene70417:CDS | 30.0% | |
| TCAATCTTGACATCTATCTT+TGG | - | chr3.1:66049732-66049751 | None:intergenic | 30.0% | |
| TGAAACTTCTTCTCTTACAA+GGG | - | chr3.1:66047281-66047300 | None:intergenic | 30.0% | |
| TGAAGCTCATAGAAGAATAT+TGG | + | chr3.1:66047306-66047325 | MS.gene70417:CDS | 30.0% | |
| TGTTGAAGTTTAAAAGCTAG+TGG | + | chr3.1:66047446-66047465 | MS.gene70417:intron | 30.0% | |
| TTAAATCTAATGAGGAAGCA+AGG | - | chr3.1:66050142-66050161 | None:intergenic | 30.0% | |
| TTGAAACTTCTTCTCTTACA+AGG | - | chr3.1:66047282-66047301 | None:intergenic | 30.0% | |
| TTTGAATGAACCATACAAGA+TGG | + | chr3.1:66047330-66047349 | MS.gene70417:CDS | 30.0% | |
| ! | AAAGATGCTTTGGATGATAA+AGG | + | chr3.1:66049663-66049682 | MS.gene70417:intron | 30.0% |
| ! | AATTCCTTTTCCACTTAAAC+AGG | + | chr3.1:66050421-66050440 | MS.gene70417:intron | 30.0% |
| ! | AATTGGCTTCATGATTACTT+AGG | - | chr3.1:66047852-66047871 | None:intergenic | 30.0% |
| ! | CAATGTTGTATGTCTGAAAT+TGG | + | chr3.1:66048171-66048190 | MS.gene70417:intron | 30.0% |
| ! | TTATGTTCCTTTTTCCTTGA+AGG | + | chr3.1:66048327-66048346 | MS.gene70417:intron | 30.0% |
| ! | TTTTCTTTCAATGCAATGCA+AGG | - | chr3.1:66048266-66048285 | None:intergenic | 30.0% |
| !! | AAATCTCTTACTTTTGTCAG+GGG | + | chr3.1:66050314-66050333 | MS.gene70417:intron | 30.0% |
| !! | TGCACACATATTTTGTTTAG+AGG | + | chr3.1:66049489-66049508 | MS.gene70417:intron | 30.0% |
| !!! | GCCATATTTTTTCAGTTTGT+TGG | - | chr3.1:66050758-66050777 | None:intergenic | 30.0% |
| AAAAGAAACCAATGCTGCAA+AGG | + | chr3.1:66048460-66048479 | MS.gene70417:CDS | 35.0% | |
| AAACAGTTACCGTTAGATCT+AGG | + | chr3.1:66050887-66050906 | MS.gene70417:CDS | 35.0% | |
| AAAGGATATATGGTACTGCA+TGG | + | chr3.1:66048478-66048497 | MS.gene70417:CDS | 35.0% | |
| AACACCAAAGAATCTTTCCA+AGG | - | chr3.1:66050543-66050562 | None:intergenic | 35.0% | |
| AACTTGCAGAACATATAGAC+AGG | - | chr3.1:66048620-66048639 | None:intergenic | 35.0% | |
| AAGCTTAAGCTATTAGATGG+AGG | - | chr3.1:66050255-66050274 | None:intergenic | 35.0% | |
| AAGGATATATGGTACTGCAT+GGG | + | chr3.1:66048479-66048498 | MS.gene70417:CDS | 35.0% | |
| AAGTTAAGGAATTGCCTGTA+TGG | - | chr3.1:66049787-66049806 | None:intergenic | 35.0% | |
| ACAAATCAAGATCTTGTCCT+AGG | - | chr3.1:66048572-66048591 | None:intergenic | 35.0% | |
| ACCAGATTAAAGATGAGATC+AGG | + | chr3.1:66049512-66049531 | MS.gene70417:intron | 35.0% | |
| ACCTGATAGCTCTTCATTTA+AGG | + | chr3.1:66049869-66049888 | MS.gene70417:intron | 35.0% | |
| ACTGCTCTATGGATCATTAT+AGG | - | chr3.1:66050512-66050531 | None:intergenic | 35.0% | |
| AGCAATAGACTCAAGTTCAA+CGG | - | chr3.1:66048418-66048437 | None:intergenic | 35.0% | |
| AGGATCTTGAACAAGTCATT+AGG | + | chr3.1:66050198-66050217 | MS.gene70417:intron | 35.0% | |
| ATCTATCTTTGGCCCATAAA+AGG | - | chr3.1:66049721-66049740 | None:intergenic | 35.0% | |
| ATCTTGAACAAGTCATTAGG+GGG | + | chr3.1:66050201-66050220 | MS.gene70417:intron | 35.0% | |
| ATGCTTCAGCAGAATGAAAA+TGG | + | chr3.1:66048147-66048166 | MS.gene70417:intron | 35.0% | |
| ATTAAGCCCTTAATCTCGTT+TGG | - | chr3.1:66050119-66050138 | None:intergenic | 35.0% | |
| CAGATTAAAGATGAGATCAG+GGG | + | chr3.1:66049514-66049533 | MS.gene70417:intron | 35.0% | |
| CCAAACTATTTGTGAACTTG+TGG | - | chr3.1:66047887-66047906 | None:intergenic | 35.0% | |
| CCACAAGTTCACAAATAGTT+TGG | + | chr3.1:66047884-66047903 | MS.gene70417:intron | 35.0% | |
| CCAGATTAAAGATGAGATCA+GGG | + | chr3.1:66049513-66049532 | MS.gene70417:intron | 35.0% | |
| CTATGGAGGGAAAAAGAAAT+GGG | + | chr3.1:66047476-66047495 | MS.gene70417:intron | 35.0% | |
| CTCTAAATACTTGAGCTTAG+TGG | - | chr3.1:66048088-66048107 | None:intergenic | 35.0% | |
| GAAACTTCTTCTCTTACAAG+GGG | - | chr3.1:66047280-66047299 | None:intergenic | 35.0% | |
| GATCTTGAACAAGTCATTAG+GGG | + | chr3.1:66050200-66050219 | MS.gene70417:intron | 35.0% | |
| GGAAAAAGGAACATAAGTTG+AGG | - | chr3.1:66048323-66048342 | None:intergenic | 35.0% | |
| GGATAAGAAACAAAATGCAG+TGG | - | chr3.1:66047949-66047968 | None:intergenic | 35.0% | |
| GGATCTTGAACAAGTCATTA+GGG | + | chr3.1:66050199-66050218 | MS.gene70417:intron | 35.0% | |
| GGTAAAATTCGAGCTTGTAT+TGG | - | chr3.1:66050608-66050627 | None:intergenic | 35.0% | |
| GTTTAGCCAAACGAGATTAA+GGG | + | chr3.1:66050110-66050129 | MS.gene70417:intron | 35.0% | |
| TCAAAGAAGAAGCTAAACGT+CGG | + | chr3.1:66048535-66048554 | MS.gene70417:CDS | 35.0% | |
| TCAACCTGTTTAAGTGGAAA+AGG | - | chr3.1:66050428-66050447 | None:intergenic | 35.0% | |
| TCCAAAATCTCCATCTTGTA+TGG | - | chr3.1:66047343-66047362 | None:intergenic | 35.0% | |
| TCCTTAAATGAAGAGCTATC+AGG | - | chr3.1:66049873-66049892 | None:intergenic | 35.0% | |
| TCTATTGTATACACCACATG+TGG | + | chr3.1:66048887-66048906 | MS.gene70417:CDS | 35.0% | |
| TCTGCATTTCTTATGAGCTT+TGG | - | chr3.1:66050814-66050833 | None:intergenic | 35.0% | |
| TGAAATTGGAACTGTGAAGA+TGG | + | chr3.1:66048185-66048204 | MS.gene70417:intron | 35.0% | |
| TGGACCTATCAAATTGATGA+CGG | + | chr3.1:66049687-66049706 | MS.gene70417:intron | 35.0% | |
| TGTATTGGAGAAAGCCATAA+TGG | - | chr3.1:66050593-66050612 | None:intergenic | 35.0% | |
| TGTCGGAGAAGATGATATAT+GGG | + | chr3.1:66049620-66049639 | MS.gene70417:intron | 35.0% | |
| TGTTTAGCCAAACGAGATTA+AGG | + | chr3.1:66050109-66050128 | MS.gene70417:intron | 35.0% | |
| TTGCGAAACCCATATAAGAT+AGG | + | chr3.1:66050011-66050030 | MS.gene70417:intron | 35.0% | |
| TTTCCAGTAGATTCAACATG+AGG | - | chr3.1:66048381-66048400 | None:intergenic | 35.0% | |
| ! | AAGCCATAATGGAAAATCAC+CGG | - | chr3.1:66050582-66050601 | None:intergenic | 35.0% |
| ! | ACCATACAAGATGGAGATTT+TGG | + | chr3.1:66047339-66047358 | MS.gene70417:CDS | 35.0% |
| ! | CAAGGTACTTTGTTAGAGAA+AGG | - | chr3.1:66047725-66047744 | None:intergenic | 35.0% |
| ! | GCTTTTAAACTTCAACATGC+AGG | - | chr3.1:66047443-66047462 | None:intergenic | 35.0% |
| ! | GTAATGGGATCAACAATCAA+TGG | - | chr3.1:66049332-66049351 | None:intergenic | 35.0% |
| ! | GTTCTTATAGAGCATTATGC+CGG | + | chr3.1:66050560-66050579 | MS.gene70417:CDS | 35.0% |
| ! | TAACTTCCACACTAGTTTGA+AGG | - | chr3.1:66048052-66048071 | None:intergenic | 35.0% |
| ! | TACAAGATGGAGATTTTGGA+AGG | + | chr3.1:66047343-66047362 | MS.gene70417:CDS | 35.0% |
| !! | AAGTCAGTAATGGTGTTATG+AGG | + | chr3.1:66048014-66048033 | MS.gene70417:intron | 35.0% |
| !! | ATAAGTTGGTTCTTTGGTAC+AGG | + | chr3.1:66049462-66049481 | MS.gene70417:intron | 35.0% |
| !! | ATGACTTGTTCAAGATCCTT+TGG | - | chr3.1:66050197-66050216 | None:intergenic | 35.0% |
| !! | ATGCTCATAAGTTGGTTCTT+TGG | + | chr3.1:66049456-66049475 | MS.gene70417:intron | 35.0% |
| !! | CTCAGCTTTAAAAGATGCTT+TGG | + | chr3.1:66049653-66049672 | MS.gene70417:intron | 35.0% |
| !!! | CAAAGCATCTTTTAAAGCTG+AGG | - | chr3.1:66049655-66049674 | None:intergenic | 35.0% |
| AAACAAAATGCAGTGGAGCA+TGG | - | chr3.1:66047942-66047961 | None:intergenic | 40.0% | |
| AAATTTATGCAGGAGGATGC+TGG | + | chr3.1:66048772-66048791 | MS.gene70417:intron | 40.0% | |
| ATGTGGCAAAAGCTGATCTT+TGG | + | chr3.1:66048904-66048923 | MS.gene70417:CDS | 40.0% | |
| ATGTTTCTTCGGTAAGATCC+AGG | - | chr3.1:66049543-66049562 | None:intergenic | 40.0% | |
| CAAAGAAGAAGCTAAACGTC+GGG | + | chr3.1:66048536-66048555 | MS.gene70417:CDS | 40.0% | |
| CCAATGCTGCAAAGGATATA+TGG | + | chr3.1:66048468-66048487 | MS.gene70417:CDS | 40.0% | |
| CCATATATCCTTTGCAGCAT+TGG | - | chr3.1:66048471-66048490 | None:intergenic | 40.0% | |
| CCCTGATCTCATCTTTAATC+TGG | - | chr3.1:66049516-66049535 | None:intergenic | 40.0% | |
| CTACTAACTCTGTGGTTCTT+AGG | + | chr3.1:66047590-66047609 | MS.gene70417:intron | 40.0% | |
| CTGTCGGAGAAGATGATATA+TGG | + | chr3.1:66049619-66049638 | MS.gene70417:intron | 40.0% | |
| GAACTGTCTGGAAGTTTACA+CGG | + | chr3.1:66049110-66049129 | MS.gene70417:CDS | 40.0% | |
| GCTATGGAGGGAAAAAGAAA+TGG | + | chr3.1:66047475-66047494 | MS.gene70417:intron | 40.0% | |
| GGATCCTTGGAAAGATTCTT+TGG | + | chr3.1:66050536-66050555 | MS.gene70417:CDS | 40.0% | |
| GTATGGATCTACTAACTCTG+TGG | + | chr3.1:66047582-66047601 | MS.gene70417:intron | 40.0% | |
| GTTACCGTTAGATCTAGGTT+TGG | + | chr3.1:66050892-66050911 | MS.gene70417:CDS | 40.0% | |
| GTTGAACTTGAGTCTATTGC+TGG | + | chr3.1:66048417-66048436 | MS.gene70417:CDS | 40.0% | |
| TATGTGATGTCAAAACGCTG+TGG | - | chr3.1:66050461-66050480 | None:intergenic | 40.0% | |
| TCAAGATTGAGGATGCTCTT+GGG | + | chr3.1:66049742-66049761 | MS.gene70417:intron | 40.0% | |
| TCTTGAACAAGTCATTAGGG+GGG | + | chr3.1:66050202-66050221 | MS.gene70417:intron | 40.0% | |
| TGATCACCTTCAAACTAGTG+TGG | + | chr3.1:66048043-66048062 | MS.gene70417:intron | 40.0% | |
| TGGGATTGCTCTTGGATAAA+GGG | + | chr3.1:66047786-66047805 | MS.gene70417:intron | 40.0% | |
| TGGGCCATGGAATAATTCTT+TGG | + | chr3.1:66047904-66047923 | MS.gene70417:intron | 40.0% | |
| TGGTCATTTGGACTTCTACA+AGG | + | chr3.1:66048935-66048954 | MS.gene70417:CDS | 40.0% | |
| TTCACAAATAGTTTGGGCCA+TGG | + | chr3.1:66047891-66047910 | MS.gene70417:intron | 40.0% | |
| TTCTGCTGAAGCATGTCAAT+TGG | - | chr3.1:66048141-66048160 | None:intergenic | 40.0% | |
| TTGGAAGATCAGTGGTCATT+TGG | + | chr3.1:66048923-66048942 | MS.gene70417:CDS | 40.0% | |
| ! | ATGCCGGTGATTTTCCATTA+TGG | + | chr3.1:66050576-66050595 | MS.gene70417:CDS | 40.0% |
| ! | ATGCTTTGGATGATAAAGGC+TGG | + | chr3.1:66049667-66049686 | MS.gene70417:intron | 40.0% |
| ! | ATTCCATTGATGGCTGTTGT+AGG | + | chr3.1:66050844-66050863 | MS.gene70417:CDS | 40.0% |
| ! | CAATTAGCTTGAATACTGCG+AGG | + | chr3.1:66050726-66050745 | MS.gene70417:intron | 40.0% |
| ! | CTATCGGGATTTTCCTGTTA+GGG | + | chr3.1:66049058-66049077 | MS.gene70417:CDS | 40.0% |
| ! | GGACCTATCAAATTGATGAC+GGG | + | chr3.1:66049688-66049707 | MS.gene70417:intron | 40.0% |
| ! | GTTTAAAAGCTAGTGGGTGA+AGG | + | chr3.1:66047453-66047472 | MS.gene70417:intron | 40.0% |
| ! | TAAGAGGCATGCTCATAAGT+TGG | + | chr3.1:66049448-66049467 | MS.gene70417:intron | 40.0% |
| ! | TCATGCAACCTTACTAGTCT+TGG | - | chr3.1:66049293-66049312 | None:intergenic | 40.0% |
| ! | TCTTCTCCGACAGATTTTTC+AGG | - | chr3.1:66049612-66049631 | None:intergenic | 40.0% |
| ! | TGTTCCTTTTTCCTTGAAGG+CGG | + | chr3.1:66048330-66048349 | MS.gene70417:intron | 40.0% |
| !! | AAAGGAAGCGTCATTCCTAT+CGG | + | chr3.1:66049042-66049061 | MS.gene70417:CDS | 40.0% |
| !! | ACCTATCAAATTGATGACGG+GGG | + | chr3.1:66049690-66049709 | MS.gene70417:intron | 40.0% |
| !! | GACCTATCAAATTGATGACG+GGG | + | chr3.1:66049689-66049708 | MS.gene70417:intron | 40.0% |
| !! | TATCATGTGCAGCTTGTTAC+TGG | + | chr3.1:66047690-66047709 | MS.gene70417:intron | 40.0% |
| !! | TTAGTTTTCTGGCACCCAAA+GGG | + | chr3.1:66048802-66048821 | MS.gene70417:intron | 40.0% |
| !!! | GGAGATTTTGGAAGGCATTA+AGG | + | chr3.1:66047351-66047370 | MS.gene70417:CDS | 40.0% |
| !!! | TTTAGTTTTCTGGCACCCAA+AGG | + | chr3.1:66048801-66048820 | MS.gene70417:intron | 40.0% |
| AAAATATGGCATCCGAGCTG+AGG | + | chr3.1:66050768-66050787 | MS.gene70417:CDS | 45.0% | |
| AAGCTAAACGTCGGGATCAT+AGG | + | chr3.1:66048544-66048563 | MS.gene70417:CDS | 45.0% | |
| ACACGGCCTGAAAAATCTGT+CGG | + | chr3.1:66049603-66049622 | MS.gene70417:intron | 45.0% | |
| ACCGTTAGATCTAGGTTTGG+TGG | + | chr3.1:66050895-66050914 | MS.gene70417:CDS | 45.0% | |
| AGTCTATTGCTGGTGCTTAC+TGG | + | chr3.1:66048427-66048446 | MS.gene70417:CDS | 45.0% | |
| ATGATCCATAGAGCAGTGCT+TGG | + | chr3.1:66050515-66050534 | MS.gene70417:CDS | 45.0% | |
| CAAGTAGTCGAACGTTACCT+GGG | - | chr3.1:66050642-66050661 | None:intergenic | 45.0% | |
| CCCACCAAACCTAGATCTAA+CGG | - | chr3.1:66050899-66050918 | None:intergenic | 45.0% | |
| CCTAACAGGAAAATCCCGAT+AGG | - | chr3.1:66049060-66049079 | None:intergenic | 45.0% | |
| CCTAATTCTGCTACCCTAAC+AGG | - | chr3.1:66049074-66049093 | None:intergenic | 45.0% | |
| CCTGTTAGGGTAGCAGAATT+AGG | + | chr3.1:66049071-66049090 | MS.gene70417:CDS | 45.0% | |
| CTGGGATTGCTCTTGGATAA+AGG | + | chr3.1:66047785-66047804 | MS.gene70417:intron | 45.0% | |
| CTTGAAGCAGGAAGATGCAA+AGG | - | chr3.1:66050173-66050192 | None:intergenic | 45.0% | |
| CTTTGCATCTTCCTGCTTCA+AGG | + | chr3.1:66050171-66050190 | MS.gene70417:intron | 45.0% | |
| GGACCTCATGTTGAATCTAC+TGG | + | chr3.1:66048375-66048394 | MS.gene70417:CDS | 45.0% | |
| GTCAAGATTGAGGATGCTCT+TGG | + | chr3.1:66049741-66049760 | MS.gene70417:intron | 45.0% | |
| TCAAGTAGTCGAACGTTACC+TGG | - | chr3.1:66050643-66050662 | None:intergenic | 45.0% | |
| TCCCCCGTCATCAATTTGAT+AGG | - | chr3.1:66049694-66049713 | None:intergenic | 45.0% | |
| TGAAACCTCTAACGCGGAAA+AGG | - | chr3.1:66049136-66049155 | None:intergenic | 45.0% | |
| TGAGCTTGCCAAGACTAGTA+AGG | + | chr3.1:66049282-66049301 | MS.gene70417:intron | 45.0% | |
| TTGCATGACATGACTGTCCT+GGG | + | chr3.1:66049305-66049324 | MS.gene70417:intron | 45.0% | |
| TTGTGAACTTGTGGGGATGA+TGG | - | chr3.1:66047878-66047897 | None:intergenic | 45.0% | |
| TTTACCTGTTACTGATGCCC+AGG | + | chr3.1:66050622-66050641 | MS.gene70417:CDS | 45.0% | |
| ! | AGATCAGCTTTTGCCACATG+TGG | - | chr3.1:66048903-66048922 | None:intergenic | 45.0% |
| ! | CCGTTAGATCTAGGTTTGGT+GGG | + | chr3.1:66050896-66050915 | MS.gene70417:CDS | 45.0% |
| ! | CCTATCGGGATTTTCCTGTT+AGG | + | chr3.1:66049057-66049076 | MS.gene70417:CDS | 45.0% |
| ! | GCTGATCTTTGGAAGATCAG+TGG | + | chr3.1:66048915-66048934 | MS.gene70417:CDS | 45.0% |
| ! | GTTCCTTTTTCCTTGAAGGC+GGG | + | chr3.1:66048331-66048350 | MS.gene70417:intron | 45.0% |
| ! | TGTGGGGATGATGGTGAAAT+TGG | - | chr3.1:66047869-66047888 | None:intergenic | 45.0% |
| ! | TTCCTTTTTCCTTGAAGGCG+GGG | + | chr3.1:66048332-66048351 | MS.gene70417:intron | 45.0% |
| !! | AAGGAAGCGTCATTCCTATC+GGG | + | chr3.1:66049043-66049062 | MS.gene70417:CDS | 45.0% |
| !! | CGTTAGATCTAGGTTTGGTG+GGG | + | chr3.1:66050897-66050916 | MS.gene70417:CDS | 45.0% |
| !! | CTTACTTTTGTCAGGGGTTG+TGG | + | chr3.1:66050320-66050339 | MS.gene70417:intron | 45.0% |
| !! | TATCAAATTGATGACGGGGG+AGG | + | chr3.1:66049693-66049712 | MS.gene70417:intron | 45.0% |
| AGCAAGGACTTAGAGAGGAC+CGG | - | chr3.1:66047767-66047786 | None:intergenic | 50.0% | |
| AGGATGCTCTTGGGAGAAAG+TGG | + | chr3.1:66049751-66049770 | MS.gene70417:intron | 50.0% | |
| ATCCAAGAGCAATCCCAGCA+AGG | - | chr3.1:66047783-66047802 | None:intergenic | 50.0% | |
| ATCCCAGCAAGGACTTAGAG+AGG | - | chr3.1:66047772-66047791 | None:intergenic | 50.0% | |
| ATCCGAGCTGAGGTTTGTCA+TGG | + | chr3.1:66050778-66050797 | MS.gene70417:CDS | 50.0% | |
| ATTGCTGGTGCTTACTGGAG+AGG | + | chr3.1:66048432-66048451 | MS.gene70417:CDS | 50.0% | |
| CAACATGAGGTCCAGCACAT+AGG | - | chr3.1:66048368-66048387 | None:intergenic | 50.0% | |
| CCTGTGTGAAACCTCTAACG+CGG | - | chr3.1:66049142-66049161 | None:intergenic | 50.0% | |
| CTCCATGACAAACCTCAGCT+CGG | - | chr3.1:66050783-66050802 | None:intergenic | 50.0% | |
| CTGAGGTTTGTCATGGAGAG+CGG | + | chr3.1:66050785-66050804 | MS.gene70417:CDS | 50.0% | |
| GATCAACAATCAATGGCCCC+AGG | - | chr3.1:66049325-66049344 | None:intergenic | 50.0% | |
| GATGGCTGTTGTAGGTGCAA+AGG | + | chr3.1:66050852-66050871 | MS.gene70417:CDS | 50.0% | |
| GCACCTACAACAGCCATCAA+TGG | - | chr3.1:66050850-66050869 | None:intergenic | 50.0% | |
| GTCCTCTCTAAGTCCTTGCT+GGG | + | chr3.1:66047767-66047786 | MS.gene70417:intron | 50.0% | |
| GTCTCACGATAGCACCCTTT+GGG | - | chr3.1:66048819-66048838 | None:intergenic | 50.0% | |
| GTGGCAGTGTTCAACCATAC+AGG | + | chr3.1:66049770-66049789 | MS.gene70417:intron | 50.0% | |
| GTTACCTGGGCATCAGTAAC+AGG | - | chr3.1:66050629-66050648 | None:intergenic | 50.0% | |
| GTTGCATGACATGACTGTCC+TGG | + | chr3.1:66049304-66049323 | MS.gene70417:intron | 50.0% | |
| TAGAGCAGTGCTTGGATCCT+TGG | + | chr3.1:66050523-66050542 | MS.gene70417:CDS | 50.0% | |
| TCTTCCTGCTTCAAGGCCAA+AGG | + | chr3.1:66050178-66050197 | MS.gene70417:intron | 50.0% | |
| TGCATGACATGACTGTCCTG+GGG | + | chr3.1:66049306-66049325 | MS.gene70417:intron | 50.0% | |
| TGTCTCACGATAGCACCCTT+TGG | - | chr3.1:66048820-66048839 | None:intergenic | 50.0% | |
| TTATGCAGGAGGATGCTGGT+GGG | + | chr3.1:66048776-66048795 | MS.gene70417:intron | 50.0% | |
| TTTATGCAGGAGGATGCTGG+TGG | + | chr3.1:66048775-66048794 | MS.gene70417:intron | 50.0% | |
| ! | AAGCTAGTGGGTGAAGGCTA+TGG | + | chr3.1:66047459-66047478 | MS.gene70417:intron | 50.0% |
| ! | AGGATCCAAGCACTGCTCTA+TGG | - | chr3.1:66050523-66050542 | None:intergenic | 50.0% |
| ! | TAGTGGGTGAAGGCTATGGA+GGG | + | chr3.1:66047463-66047482 | MS.gene70417:intron | 50.0% |
| !! | AGATCCTTTGGCCTTGAAGC+AGG | - | chr3.1:66050185-66050204 | None:intergenic | 50.0% |
| !!! | CTGGTGGGGGTTTAGTTTTC+TGG | + | chr3.1:66048791-66048810 | MS.gene70417:intron | 50.0% |
| CCGCGTTAGAGGTTTCACAC+AGG | + | chr3.1:66049139-66049158 | MS.gene70417:CDS | 55.0% | |
| CTCCCCGCCTTCAAGGAAAA+AGG | - | chr3.1:66048337-66048356 | None:intergenic | 55.0% | |
| GGTCCTCTCTAAGTCCTTGC+TGG | + | chr3.1:66047766-66047785 | MS.gene70417:intron | 55.0% | |
| GTCCTTGCTGGGATTGCTCT+TGG | + | chr3.1:66047778-66047797 | MS.gene70417:intron | 55.0% | |
| TATGCAGGAGGATGCTGGTG+GGG | + | chr3.1:66048777-66048796 | MS.gene70417:intron | 55.0% | |
| ! | CTAGTGGGTGAAGGCTATGG+AGG | + | chr3.1:66047462-66047481 | MS.gene70417:intron | 55.0% |
| ! | TTTTCCTTGAAGGCGGGGAG+TGG | + | chr3.1:66048337-66048356 | MS.gene70417:intron | 55.0% |
| !! | AGATGAGATCAGGGGTGTCC+TGG | + | chr3.1:66049522-66049541 | MS.gene70417:intron | 55.0% |
| !! | TCTAGGTTTGGTGGGGAGCT+TGG | + | chr3.1:66050904-66050923 | MS.gene70417:CDS | 55.0% |
| !!! | ACGGGGGAGGTGCCTTTTAT+GGG | + | chr3.1:66049706-66049725 | MS.gene70417:intron | 55.0% |
| ATGCAGGAGGATGCTGGTGG+GGG | + | chr3.1:66048778-66048797 | MS.gene70417:intron | 60.0% | |
| ! | CACGGCCTTTTCCGCGTTAG+AGG | + | chr3.1:66049128-66049147 | MS.gene70417:CDS | 60.0% |
| ! | GAGTGGTGGGACCTATGTGC+TGG | + | chr3.1:66048354-66048373 | MS.gene70417:CDS | 60.0% |
| !!! | GACGGGGGAGGTGCCTTTTA+TGG | + | chr3.1:66049705-66049724 | MS.gene70417:intron | 60.0% |
| CCTTGAAGGCGGGGAGTGGT+GGG | + | chr3.1:66048341-66048360 | MS.gene70417:intron | 65.0% | |
| CGTCGGGATCATAGGCGCCT+AGG | + | chr3.1:66048552-66048571 | MS.gene70417:CDS | 65.0% | |
| TCCTTGAAGGCGGGGAGTGG+TGG | + | chr3.1:66048340-66048359 | MS.gene70417:intron | 65.0% | |
| CCCACCACTCCCCGCCTTCA+AGG | - | chr3.1:66048344-66048363 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.1 | gene | 66047141 | 66050993 | 66047141 | ID=MS.gene70417 |
| chr3.1 | mRNA | 66047141 | 66050993 | 66047141 | ID=MS.gene70417.t1;Parent=MS.gene70417 |
| chr3.1 | exon | 66047141 | 66047143 | 66047141 | ID=MS.gene70417.t1.exon1;Parent=MS.gene70417.t1 |
| chr3.1 | CDS | 66047141 | 66047143 | 66047141 | ID=cds.MS.gene70417.t1;Parent=MS.gene70417.t1 |
| chr3.1 | exon | 66047253 | 66047400 | 66047253 | ID=MS.gene70417.t1.exon2;Parent=MS.gene70417.t1 |
| chr3.1 | CDS | 66047253 | 66047400 | 66047253 | ID=cds.MS.gene70417.t1;Parent=MS.gene70417.t1 |
| chr3.1 | exon | 66048349 | 66048619 | 66048349 | ID=MS.gene70417.t1.exon3;Parent=MS.gene70417.t1 |
| chr3.1 | CDS | 66048349 | 66048619 | 66048349 | ID=cds.MS.gene70417.t1;Parent=MS.gene70417.t1 |
| chr3.1 | exon | 66048851 | 66049160 | 66048851 | ID=MS.gene70417.t1.exon4;Parent=MS.gene70417.t1 |
| chr3.1 | CDS | 66048851 | 66049160 | 66048851 | ID=cds.MS.gene70417.t1;Parent=MS.gene70417.t1 |
| chr3.1 | exon | 66050443 | 66050643 | 66050443 | ID=MS.gene70417.t1.exon5;Parent=MS.gene70417.t1 |
| chr3.1 | CDS | 66050443 | 66050643 | 66050443 | ID=cds.MS.gene70417.t1;Parent=MS.gene70417.t1 |
| chr3.1 | exon | 66050733 | 66050993 | 66050733 | ID=MS.gene70417.t1.exon6;Parent=MS.gene70417.t1 |
| chr3.1 | CDS | 66050733 | 66050993 | 66050733 | ID=cds.MS.gene70417.t1;Parent=MS.gene70417.t1 |
| Gene Sequence |
| Protein sequence |
