Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene062815.t1 | PIA61184.1 | 79.7 | 118 | 24 | 0 | 16 | 133 | 290 | 407 | 1.50E-32 | 149.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene062815.t1 | Q9SLX0 | 78.6 | 56 | 12 | 0 | 16 | 71 | 296 | 351 | 4.1e-18 | 92.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene062815.t1 | A0A2G5EZK5 | 79.7 | 118 | 24 | 0 | 16 | 133 | 290 | 407 | 1.1e-32 | 149.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049254 | MS.gene062815 | 0.839949 | 1.17E-57 | -1.69E-46 |
| MS.gene050273 | MS.gene062815 | 0.826596 | 2.49E-54 | -1.69E-46 |
| MS.gene050559 | MS.gene062815 | 0.8207 | 5.97E-53 | -1.69E-46 |
| MS.gene050561 | MS.gene062815 | 0.815152 | 1.07E-51 | -1.69E-46 |
| MS.gene050562 | MS.gene062815 | 0.806675 | 7.33E-50 | -1.69E-46 |
| MS.gene051279 | MS.gene062815 | 0.832587 | 8.68E-56 | -1.69E-46 |
| MS.gene051332 | MS.gene062815 | 0.801075 | 1.07E-48 | -1.69E-46 |
| MS.gene051594 | MS.gene062815 | 0.801934 | 7.12E-49 | -1.69E-46 |
| MS.gene052108 | MS.gene062815 | 0.801772 | 7.69E-49 | -1.69E-46 |
| MS.gene052239 | MS.gene062815 | -0.831432 | 1.67E-55 | -1.69E-46 |
| MS.gene052447 | MS.gene062815 | 0.80398 | 2.69E-49 | -1.69E-46 |
| MS.gene052519 | MS.gene062815 | 0.815181 | 1.05E-51 | -1.69E-46 |
| MS.gene052582 | MS.gene062815 | 0.843971 | 1.01E-58 | -1.69E-46 |
| MS.gene052584 | MS.gene062815 | 0.84122 | 5.42E-58 | -1.69E-46 |
| MS.gene052586 | MS.gene062815 | 0.800132 | 1.66E-48 | -1.69E-46 |
| MS.gene052773 | MS.gene062815 | 0.806055 | 9.90E-50 | -1.69E-46 |
| MS.gene053226 | MS.gene062815 | 0.808868 | 2.51E-50 | -1.69E-46 |
| MS.gene053931 | MS.gene062815 | 0.804357 | 2.25E-49 | -1.69E-46 |
| MS.gene05415 | MS.gene062815 | 0.835799 | 1.36E-56 | -1.69E-46 |
| MS.gene05423 | MS.gene062815 | 0.839453 | 1.57E-57 | -1.69E-46 |
| MS.gene054651 | MS.gene062815 | 0.835472 | 1.64E-56 | -1.69E-46 |
| MS.gene05531 | MS.gene062815 | 0.803896 | 2.80E-49 | -1.69E-46 |
| MS.gene055694 | MS.gene062815 | 0.802228 | 6.20E-49 | -1.69E-46 |
| MS.gene055818 | MS.gene062815 | 0.813562 | 2.40E-51 | -1.69E-46 |
| MS.gene055841 | MS.gene062815 | 0.806776 | 6.98E-50 | -1.69E-46 |
| MS.gene055952 | MS.gene062815 | 0.807231 | 5.59E-50 | -1.69E-46 |
| MS.gene056174 | MS.gene062815 | 0.813432 | 2.57E-51 | -1.69E-46 |
| MS.gene056366 | MS.gene062815 | 0.817031 | 4.07E-52 | -1.69E-46 |
| MS.gene056776 | MS.gene062815 | 0.806218 | 9.15E-50 | -1.69E-46 |
| MS.gene05686 | MS.gene062815 | 0.815126 | 1.08E-51 | -1.69E-46 |
| MS.gene05690 | MS.gene062815 | 0.817341 | 3.47E-52 | -1.69E-46 |
| MS.gene057021 | MS.gene062815 | 0.803183 | 3.94E-49 | -1.69E-46 |
| MS.gene057060 | MS.gene062815 | 0.817031 | 4.07E-52 | -1.69E-46 |
| MS.gene057208 | MS.gene062815 | 0.83657 | 8.66E-57 | -1.69E-46 |
| MS.gene057444 | MS.gene062815 | 0.826794 | 2.23E-54 | -1.69E-46 |
| MS.gene057598 | MS.gene062815 | 0.826074 | 3.31E-54 | -1.69E-46 |
| MS.gene058279 | MS.gene062815 | 0.800316 | 1.53E-48 | -1.69E-46 |
| MS.gene058294 | MS.gene062815 | 0.836267 | 1.03E-56 | -1.69E-46 |
| MS.gene058625 | MS.gene062815 | 0.828118 | 1.07E-54 | -1.69E-46 |
| MS.gene058979 | MS.gene062815 | 0.81706 | 4.01E-52 | -1.69E-46 |
| MS.gene059625 | MS.gene062815 | 0.811248 | 7.70E-51 | -1.69E-46 |
| MS.gene060257 | MS.gene062815 | 0.818489 | 1.91E-52 | -1.69E-46 |
| MS.gene060521 | MS.gene062815 | 0.820367 | 7.12E-53 | -1.69E-46 |
| MS.gene060634 | MS.gene062815 | -0.823971 | 1.04E-53 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene062815.t1 | MTR_2g034900 | 92.437 | 119 | 9 | 0 | 16 | 134 | 291 | 409 | 2.90e-73 | 227 |
| MS.gene062815.t1 | MTR_4g131510 | 82.353 | 119 | 21 | 0 | 16 | 134 | 214 | 332 | 2.61e-66 | 207 |
| MS.gene062815.t1 | MTR_1g083810 | 79.832 | 119 | 24 | 0 | 16 | 134 | 292 | 410 | 3.59e-63 | 201 |
| MS.gene062815.t1 | MTR_8g027585 | 78.992 | 119 | 25 | 0 | 16 | 134 | 207 | 325 | 5.30e-63 | 199 |
| MS.gene062815.t1 | MTR_7g112350 | 76.230 | 122 | 29 | 0 | 13 | 134 | 289 | 410 | 1.38e-59 | 192 |
| MS.gene062815.t1 | MTR_4g133040 | 77.311 | 119 | 27 | 0 | 16 | 134 | 225 | 343 | 2.01e-59 | 191 |
| MS.gene062815.t1 | MTR_4g121435 | 75.000 | 120 | 29 | 1 | 16 | 134 | 294 | 413 | 1.24e-57 | 187 |
| MS.gene062815.t1 | MTR_4g132980 | 74.167 | 120 | 31 | 0 | 16 | 135 | 57 | 176 | 2.33e-56 | 178 |
| MS.gene062815.t1 | MTR_4g132980 | 74.167 | 120 | 31 | 0 | 16 | 135 | 185 | 304 | 3.61e-55 | 179 |
| MS.gene062815.t1 | MTR_4g127570 | 75.833 | 120 | 28 | 1 | 16 | 134 | 141 | 260 | 8.40e-50 | 164 |
| MS.gene062815.t1 | MTR_4g133030 | 67.939 | 131 | 36 | 1 | 4 | 134 | 206 | 330 | 1.83e-48 | 162 |
| MS.gene062815.t1 | MTR_4g131000 | 74.790 | 119 | 29 | 1 | 16 | 134 | 213 | 330 | 1.03e-46 | 157 |
| MS.gene062815.t1 | MTR_1g053470 | 66.116 | 121 | 39 | 2 | 16 | 134 | 86 | 206 | 8.82e-46 | 150 |
| MS.gene062815.t1 | MTR_1g053470 | 66.116 | 121 | 39 | 2 | 16 | 134 | 86 | 206 | 1.61e-45 | 150 |
| MS.gene062815.t1 | MTR_1g053470 | 66.116 | 121 | 39 | 2 | 16 | 134 | 86 | 206 | 9.18e-45 | 150 |
| MS.gene062815.t1 | MTR_4g132960 | 75.269 | 93 | 23 | 0 | 42 | 134 | 3 | 95 | 2.35e-37 | 126 |
| MS.gene062815.t1 | MTR_4g132967 | 75.269 | 93 | 23 | 0 | 42 | 134 | 7 | 99 | 2.06e-36 | 124 |
| MS.gene062815.t1 | MTR_7g112150 | 48.739 | 119 | 58 | 3 | 16 | 134 | 312 | 427 | 2.03e-27 | 105 |
| MS.gene062815.t1 | MTR_7g113400 | 49.573 | 117 | 56 | 3 | 16 | 132 | 311 | 424 | 3.31e-27 | 104 |
| MS.gene062815.t1 | MTR_4g124270 | 58.763 | 97 | 26 | 3 | 10 | 105 | 39 | 122 | 3.40e-25 | 94.4 |
| MS.gene062815.t1 | MTR_7g112160 | 46.218 | 119 | 61 | 3 | 16 | 134 | 312 | 427 | 3.34e-24 | 96.7 |
| MS.gene062815.t1 | MTR_4g013265 | 45.833 | 120 | 21 | 2 | 16 | 134 | 129 | 205 | 3.34e-23 | 92.4 |
| MS.gene062815.t1 | MTR_1g066760 | 36.190 | 105 | 60 | 2 | 23 | 121 | 310 | 413 | 3.22e-14 | 68.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene062815.t1 | AT3G06720 | 79.832 | 119 | 24 | 0 | 16 | 134 | 290 | 408 | 2.79e-61 | 196 |
| MS.gene062815.t1 | AT3G06720 | 79.832 | 119 | 24 | 0 | 16 | 134 | 290 | 408 | 2.79e-61 | 196 |
| MS.gene062815.t1 | AT4G16143 | 80.672 | 119 | 23 | 0 | 16 | 134 | 295 | 413 | 5.13e-58 | 188 |
| MS.gene062815.t1 | AT4G16143 | 80.672 | 119 | 23 | 0 | 16 | 134 | 295 | 413 | 5.13e-58 | 188 |
| MS.gene062815.t1 | AT4G02150 | 73.504 | 117 | 31 | 0 | 16 | 132 | 293 | 409 | 4.97e-57 | 182 |
| MS.gene062815.t1 | AT1G09270 | 75.630 | 119 | 29 | 0 | 16 | 134 | 215 | 333 | 1.32e-56 | 182 |
| MS.gene062815.t1 | AT4G02150 | 72.269 | 119 | 33 | 0 | 16 | 134 | 293 | 411 | 1.97e-56 | 184 |
| MS.gene062815.t1 | AT1G09270 | 75.630 | 119 | 29 | 0 | 16 | 134 | 297 | 415 | 3.13e-56 | 183 |
| MS.gene062815.t1 | AT1G09270 | 75.630 | 119 | 29 | 0 | 16 | 134 | 297 | 415 | 3.13e-56 | 183 |
| MS.gene062815.t1 | AT1G02690 | 70.588 | 119 | 35 | 0 | 16 | 134 | 295 | 413 | 1.25e-54 | 179 |
| MS.gene062815.t1 | AT1G02690 | 70.588 | 119 | 35 | 0 | 16 | 134 | 294 | 412 | 1.29e-54 | 179 |
| MS.gene062815.t1 | AT5G49310 | 60.504 | 119 | 47 | 0 | 16 | 134 | 288 | 406 | 1.84e-44 | 152 |
| MS.gene062815.t1 | AT3G05720 | 59.649 | 114 | 46 | 0 | 21 | 134 | 283 | 396 | 4.33e-43 | 148 |
| MS.gene062815.t1 | AT3G05720 | 59.649 | 114 | 46 | 0 | 21 | 134 | 283 | 396 | 4.33e-43 | 148 |
| MS.gene062815.t1 | AT5G52000 | 53.782 | 119 | 55 | 0 | 16 | 134 | 218 | 336 | 1.54e-38 | 135 |
| MS.gene062815.t1 | AT1G32880 | 60.417 | 48 | 19 | 0 | 87 | 134 | 40 | 87 | 1.97e-12 | 61.6 |
| MS.gene062815.t1 | AT5G49305 | 32.456 | 114 | 75 | 2 | 18 | 130 | 215 | 327 | 2.73e-11 | 60.1 |
| MS.gene062815.t1 | AT5G49305 | 32.456 | 114 | 75 | 2 | 18 | 130 | 215 | 327 | 2.73e-11 | 60.1 |
| MS.gene062815.t1 | AT5G49305 | 32.456 | 114 | 75 | 2 | 18 | 130 | 215 | 327 | 2.73e-11 | 60.1 |
| MS.gene062815.t1 | AT5G49305 | 32.456 | 114 | 75 | 2 | 18 | 130 | 215 | 327 | 2.73e-11 | 60.1 |
| MS.gene062815.t1 | AT5G49305 | 32.456 | 114 | 75 | 2 | 18 | 130 | 215 | 327 | 2.73e-11 | 60.1 |
| MS.gene062815.t1 | AT5G03070 | 30.769 | 104 | 67 | 1 | 23 | 121 | 310 | 413 | 8.68e-11 | 58.5 |
Find 0 sgRNAs with CRISPR-Local
Find 156 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTGTTTACTAAATTTTAATA+TGG | - | 15065:25630-25649 | MS.gene062815:intergenic | 10.0% |
| !! | ACTAATTAATGCTATATATT+TGG | + | 15065:26195-26214 | MS.gene062815:intron | 15.0% |
| !! | CAAAGAAATAATTAATAGTA+GGG | - | 15065:25893-25912 | MS.gene062815:intergenic | 15.0% |
| !!! | AAAAAAACAAATGTTTGTTA+TGG | + | 15065:26521-26540 | MS.gene062815:intron | 15.0% |
| !!! | AAAAAACAAATGTTTGTTAT+GGG | + | 15065:26522-26541 | MS.gene062815:intron | 15.0% |
| !!! | ATTCAAATTTGATGTTTTTT+GGG | + | 15065:27033-27052 | MS.gene062815:intron | 15.0% |
| !!! | TATTCAAATTTGATGTTTTT+TGG | + | 15065:27032-27051 | MS.gene062815:intron | 15.0% |
| !! | AAAAAATAGAGATATATTGG+TGG | + | 15065:26589-26608 | MS.gene062815:intron | 20.0% |
| !! | AGTTATGTATGTAATTGAAA+TGG | - | 15065:27226-27245 | MS.gene062815:intergenic | 20.0% |
| !! | CCAAAGAAATAATTAATAGT+AGG | - | 15065:25894-25913 | MS.gene062815:intergenic | 20.0% |
| !! | TTTATGTATTTACAACAGAA+TGG | - | 15065:27189-27208 | MS.gene062815:intergenic | 20.0% |
| !! | TTTGCAAGTAATTAGATTTA+GGG | + | 15065:25767-25786 | MS.gene062815:intron | 20.0% |
| !!! | AATACTTTTCTTGTGATTAT+GGG | - | 15065:26859-26878 | MS.gene062815:intergenic | 20.0% |
| !!! | AATTTATATGCATGTTTTGT+AGG | + | 15065:25451-25470 | MS.gene062815:intron | 20.0% |
| !!! | ACCAATATATCTCTATTTTT+TGG | - | 15065:26590-26609 | MS.gene062815:intergenic | 20.0% |
| !!! | CCTACTATTAATTATTTCTT+TGG | + | 15065:25891-25910 | MS.gene062815:intron | 20.0% |
| !!! | CTTTTGTGTATTAATGATAA+TGG | + | 15065:25181-25200 | MS.gene062815:intron | 20.0% |
| !!! | TAATACTTTTCTTGTGATTA+TGG | - | 15065:26860-26879 | MS.gene062815:intergenic | 20.0% |
| !!! | TTCTTTTTTAATGTCAAACT+CGG | - | 15065:27431-27450 | MS.gene062815:intergenic | 20.0% |
| !!! | TTTTGCAAGTAATTAGATTT+AGG | + | 15065:25766-25785 | MS.gene062815:intron | 20.0% |
| ! | AAACGACACTTAAAAATGAA+CGG | + | 15065:26682-26701 | MS.gene062815:intron | 25.0% |
| ! | AAGATATGAGTAATTGACAA+AGG | - | 15065:26139-26158 | MS.gene062815:intergenic | 25.0% |
| ! | AATCCAACAATTACTCTAAT+TGG | - | 15065:27142-27161 | MS.gene062815:intergenic | 25.0% |
| ! | AATTGAGTTATCATGAACAT+GGG | - | 15065:26955-26974 | MS.gene062815:intergenic | 25.0% |
| ! | AGATATGAGTAATTGACAAA+GGG | - | 15065:26138-26157 | MS.gene062815:intergenic | 25.0% |
| ! | ATCATAACTGAACATACAAA+CGG | + | 15065:25153-25172 | MS.gene062815:intron | 25.0% |
| ! | ATTATATCAAACATTACAGC+TGG | + | 15065:26897-26916 | MS.gene062815:CDS | 25.0% |
| ! | GCCAAAAAATAGAGATATAT+TGG | + | 15065:26586-26605 | MS.gene062815:intron | 25.0% |
| ! | GTTGTAAATACATAAAAGAC+AGG | + | 15065:27193-27212 | MS.gene062815:intron | 25.0% |
| ! | TACAACAGAATGGAAAATAA+GGG | - | 15065:27179-27198 | MS.gene062815:intergenic | 25.0% |
| ! | TTACAACAGAATGGAAAATA+AGG | - | 15065:27180-27199 | MS.gene062815:intergenic | 25.0% |
| !! | AAACACATACTTTAGCATTT+TGG | - | 15065:25799-25818 | MS.gene062815:intergenic | 25.0% |
| !! | CTAAATCAGTACTTTATTTC+AGG | - | 15065:25674-25693 | MS.gene062815:intergenic | 25.0% |
| !! | TAATTGACAAAGGGTATAAT+TGG | - | 15065:26129-26148 | MS.gene062815:intergenic | 25.0% |
| !! | TTCTTCTTTTTGAACATTCA+TGG | - | 15065:26423-26442 | MS.gene062815:intergenic | 25.0% |
| !!! | GTTAGCTTATTTTCTGAAAA+AGG | + | 15065:27325-27344 | MS.gene062815:intron | 25.0% |
| !!! | TAATGATAATGGAACTTTGA+TGG | + | 15065:25192-25211 | MS.gene062815:intron | 25.0% |
| !!! | TATATTGGTGGATTAAATTG+AGG | + | 15065:26601-26620 | MS.gene062815:intron | 25.0% |
| AAACGACACTTAAAAAGGAA+CGG | - | 15065:26047-26066 | MS.gene062814:intergenic | 30.0% | |
| AAATACATAAAAGACAGGTG+TGG | + | 15065:27198-27217 | MS.gene062815:intron | 30.0% | |
| AACAAATGACAAAATCCAAG+CGG | + | 15065:25317-25336 | MS.gene062815:intron | 30.0% | |
| ACACCAATTAGAGTAATTGT+TGG | + | 15065:27136-27155 | MS.gene062815:intron | 30.0% | |
| ACATTAAAAAAGAAGCTGCA+TGG | + | 15065:27437-27456 | MS.gene062815:CDS | 30.0% | |
| AGAGTAATTGTTGGATTGTT+AGG | + | 15065:27145-27164 | MS.gene062815:intron | 30.0% | |
| CAAAATCAGATAACTCTCAA+AGG | - | 15065:26771-26790 | MS.gene062815:intergenic | 30.0% | |
| CAATTGAGTTATCATGAACA+TGG | - | 15065:26956-26975 | MS.gene062815:intergenic | 30.0% | |
| CATTAAAAAAGAAGCTGCAT+GGG | + | 15065:27438-27457 | MS.gene062815:CDS | 30.0% | |
| CTTGTGAATTGTTCAACAAT+TGG | + | 15065:25567-25586 | MS.gene062815:intron | 30.0% | |
| GAACCATTTATGTATGATGT+AGG | + | 15065:27354-27373 | MS.gene062815:intron | 30.0% | |
| TACCAAAACGACAGTTAAAT+AGG | - | 15065:26088-26107 | MS.gene062815:intergenic | 30.0% | |
| TCATAACTGAACATACAAAC+GGG | + | 15065:25154-25173 | MS.gene062815:intron | 30.0% | |
| TCTTTGGTCAATTAACCTAA+TGG | + | 15065:25907-25926 | MS.gene062815:intron | 30.0% | |
| TGTAGATATATTTACTTCCC+AGG | + | 15065:27109-27128 | MS.gene062815:intron | 30.0% | |
| TGTTCAAAAAGAAGAAAGAG+TGG | + | 15065:26427-26446 | MS.gene062815:intron | 30.0% | |
| ! | GAGAGTTATCTGATTTTGTT+GGG | + | 15065:26773-26792 | MS.gene062815:intron | 30.0% |
| ! | TACAATGATTGTTATTGCAC+CGG | - | 15065:27085-27104 | MS.gene062815:intergenic | 30.0% |
| ! | TGAGAGTTATCTGATTTTGT+TGG | + | 15065:26772-26791 | MS.gene062815:intron | 30.0% |
| !! | TTCCTATTTAACTGTCGTTT+TGG | + | 15065:26083-26102 | MS.gene062815:intron | 30.0% |
| !!! | AATTCACTTTGCTATTTTCG+TGG | + | 15065:26649-26668 | MS.gene062815:intron | 30.0% |
| !!! | ACTGTCGTTTTGGTATTTTA+AGG | + | 15065:26093-26112 | MS.gene062815:intron | 30.0% |
| !!! | CCTTTTTAAGTGTCGTTTTA+GGG | + | 15065:26049-26068 | MS.gene062815:intron | 30.0% |
| !!! | CTGTCGTTTTGGTATTTTAA+GGG | + | 15065:26094-26113 | MS.gene062815:intron | 30.0% |
| !!! | TAGTGTTGTGTTGGTAATTT+TGG | + | 15065:25691-25710 | MS.gene062815:intron | 30.0% |
| !!! | TCCTTTTTAAGTGTCGTTTT+AGG | + | 15065:26048-26067 | MS.gene062815:intron | 30.0% |
| !!! | TGCCATTTTGTTTTCTGTTT+GGG | + | 15065:27259-27278 | MS.gene062815:intron | 30.0% |
| !!! | TTGCCATTTTGTTTTCTGTT+TGG | + | 15065:27258-27277 | MS.gene062815:intron | 30.0% |
| ACCCCAAACAGAAAACAAAA+TGG | - | 15065:27264-27283 | MS.gene062815:intergenic | 35.0% | |
| ACTCTAATTGGTGTATAACC+TGG | - | 15065:27130-27149 | MS.gene062815:intergenic | 35.0% | |
| AGACTCAGGTAATGTCATAA+TGG | + | 15065:25544-25563 | MS.gene062815:intron | 35.0% | |
| AGACTCATTGGAACTACTAA+TGG | + | 15065:26451-26470 | MS.gene062815:intron | 35.0% | |
| CAATAACTGCAAAAGATCAC+TGG | - | 15065:25416-25435 | MS.gene062815:intergenic | 35.0% | |
| CAGCCTACATCATACATAAA+TGG | - | 15065:27360-27379 | MS.gene062815:intergenic | 35.0% | |
| CCCTAAAACGACACTTAAAA+AGG | - | 15065:26052-26071 | MS.gene062815:intergenic | 35.0% | |
| CTCTAATTGGTGTATAACCT+GGG | - | 15065:27129-27148 | MS.gene062815:intergenic | 35.0% | |
| GAAGAATCGTTACTCACAAA+AGG | - | 15065:25380-25399 | MS.gene062815:intergenic | 35.0% | |
| GACACTTAAAAATGAACGGA+GGG | + | 15065:26686-26705 | MS.gene062815:intron | 35.0% | |
| GTATTAAGAAAGAAGCTTGC+TGG | + | 15065:26874-26893 | MS.gene062815:CDS | 35.0% | |
| GTGAGCATAACTCATTCATA+GGG | - | 15065:25998-26017 | MS.gene062815:intergenic | 35.0% | |
| GTTATCATGAACATGGGATT+TGG | - | 15065:26949-26968 | MS.gene062815:intergenic | 35.0% | |
| TCATTGGAACTACTAATGGA+AGG | + | 15065:26455-26474 | MS.gene062815:intron | 35.0% | |
| ! | ACTTTGTCAAACTTTTGCAG+GGG | + | 15065:25082-25101 | MS.gene062815:CDS | 35.0% |
| ! | ATAATGGAACTTTGATGGAC+AGG | + | 15065:25197-25216 | MS.gene062815:intron | 35.0% |
| ! | GACTTTGTCAAACTTTTGCA+GGG | + | 15065:25081-25100 | MS.gene062815:CDS | 35.0% |
| ! | GTATCACATGCTGTTTAACA+CGG | + | 15065:27055-27074 | MS.gene062815:intron | 35.0% |
| ! | TCTTTTTGTCAGGCTGTTAT+TGG | + | 15065:26798-26817 | MS.gene062815:intron | 35.0% |
| !! | CACATACTTGATTTGCTCAT+GGG | - | 15065:27491-27510 | MS.gene062815:intergenic | 35.0% |
| !! | GTACTGATTTAGTGTTGTGT+TGG | + | 15065:25682-25701 | MS.gene062815:intron | 35.0% |
| !! | TCACATACTTGATTTGCTCA+TGG | - | 15065:27492-27511 | MS.gene062815:intergenic | 35.0% |
| !! | TTTTGAAGAAGATTGACCAG+AGG | - | 15065:27406-27425 | MS.gene062815:intergenic | 35.0% |
| !!! | GCCATTTTGTTTTCTGTTTG+GGG | + | 15065:27260-27279 | MS.gene062815:intron | 35.0% |
| ACAGCAACTACCTGATCAAA+TGG | - | 15065:25121-25140 | MS.gene062815:intergenic | 40.0% | |
| ACGGTGGGAAATATTGTAAC+GGG | + | 15065:25510-25529 | MS.gene062815:CDS | 40.0% | |
| ACTACTAATGGAAGGTGAAG+AGG | + | 15065:26463-26482 | MS.gene062815:intron | 40.0% | |
| AGAAAGAGTGGAAGACTCAT+TGG | + | 15065:26439-26458 | MS.gene062815:intron | 40.0% | |
| ATAGGGACATCACAATATGC+AGG | - | 15065:25981-26000 | MS.gene062815:intergenic | 40.0% | |
| ATCATGAACATGGGATTTGG+AGG | - | 15065:26946-26965 | MS.gene062815:intergenic | 40.0% | |
| ATGAATGAGTTATGCTCACG+TGG | + | 15065:25999-26018 | MS.gene062815:intron | 40.0% | |
| ATGTAGGCTGTTATTGAAGC+CGG | + | 15065:27370-27389 | MS.gene062815:intron | 40.0% | |
| ATTTGGAGGTTACCTGTATC+TGG | - | 15065:26932-26951 | MS.gene062815:intergenic | 40.0% | |
| CACGGTGGGAAATATTGTAA+CGG | + | 15065:25509-25528 | MS.gene062815:CDS | 40.0% | |
| CGACACTTAAAAATGAACGG+AGG | + | 15065:26685-26704 | MS.gene062815:intron | 40.0% | |
| CGTGAGCATAACTCATTCAT+AGG | - | 15065:25999-26018 | MS.gene062815:intergenic | 40.0% | |
| CTACTAATGGAAGGTGAAGA+GGG | + | 15065:26464-26483 | MS.gene062815:intron | 40.0% | |
| TAGGGACATCACAATATGCA+GGG | - | 15065:25980-25999 | MS.gene062815:intergenic | 40.0% | |
| TCAACAGGCTCAAAAGACAT+GGG | - | 15065:26836-26855 | MS.gene062815:intergenic | 40.0% | |
| TCTTGTGATTATGGGTCAAC+AGG | - | 15065:26851-26870 | MS.gene062815:intergenic | 40.0% | |
| TGGAAACAAAGACCAGATAC+AGG | + | 15065:26917-26936 | MS.gene062815:CDS | 40.0% | |
| TGGTCAATTAACCTAATGGC+TGG | + | 15065:25911-25930 | MS.gene062815:intron | 40.0% | |
| ! | GGACTTTGTCAAACTTTTGC+AGG | + | 15065:25080-25099 | MS.gene062815:CDS | 40.0% |
| ! | TTGTTGGGACTCTTTTTGTC+AGG | + | 15065:26788-26807 | MS.gene062815:intron | 40.0% |
| !! | TGAATTTCTAGCCAGCCATT+AGG | - | 15065:25925-25944 | MS.gene062815:intergenic | 40.0% |
| !!! | GATCAGGTAGTTGCTGTTTT+TGG | + | 15065:25124-25143 | MS.gene062815:intron | 40.0% |
| AAAACCAAACGCTCAAGAGC+TGG | - | 15065:25237-25256 | MS.gene062814:intergenic | 45.0% | |
| ACCCCTTGAGATGAGTAAGT+GGG | + | 15065:25944-25963 | MS.gene062815:intron | 45.0% | |
| ACCTGATCAAATGGAGGTTG+TGG | - | 15065:25112-25131 | MS.gene062815:intergenic | 45.0% | |
| AGGGACATCACAATATGCAG+GGG | - | 15065:25979-25998 | MS.gene062815:intergenic | 45.0% | |
| CAAAATCCAAGCGGTGATTG+AGG | + | 15065:25326-25345 | MS.gene062815:intron | 45.0% | |
| CGACACTTAAAAAGGAACGG+AGG | - | 15065:26044-26063 | MS.gene062815:intergenic | 45.0% | |
| GCAACTACCTGATCAAATGG+AGG | - | 15065:25118-25137 | MS.gene062815:intergenic | 45.0% | |
| GCACTCTCTTATCTCTCTGA+TGG | + | 15065:25294-25313 | MS.gene062815:intron | 45.0% | |
| GTCAACAGGCTCAAAAGACA+TGG | - | 15065:26837-26856 | MS.gene062815:intergenic | 45.0% | |
| TCCCCACTTACTCATCTCAA+GGG | - | 15065:25949-25968 | MS.gene062815:intergenic | 45.0% | |
| TTCCCCACTTACTCATCTCA+AGG | - | 15065:25950-25969 | MS.gene062815:intergenic | 45.0% | |
| ! | TGCTGTTTAACACGGAGATC+CGG | + | 15065:27063-27082 | MS.gene062815:intron | 45.0% |
| !! | AAATTTAATTAGAAATAATT+AGG | - | 15065:25599-25618 | MS.gene062815:intergenic | 5.0% |
| AAGTCCTGACAGATGCATGC+TGG | + | 15065:25271-25290 | MS.gene062815:intron | 50.0% | |
| ACATCACAATATGCAGGGGC+CGG | - | 15065:25975-25994 | MS.gene062815:intergenic | 50.0% | |
| ACTTCCAGCTCTTGAGCGTT+TGG | + | 15065:25230-25249 | MS.gene062815:intron | 50.0% | |
| AGTCCTGACAGATGCATGCT+GGG | + | 15065:25272-25291 | MS.gene062815:intron | 50.0% | |
| CACCCCTTGAGATGAGTAAG+TGG | + | 15065:25943-25962 | MS.gene062815:intron | 50.0% | |
| CCCCACTTACTCATCTCAAG+GGG | - | 15065:25948-25967 | MS.gene062815:intergenic | 50.0% | |
| CCCCTTGAGATGAGTAAGTG+GGG | + | 15065:25945-25964 | MS.gene062815:intron | 50.0% | |
| CTCTCCAATGCTACATCTGG+CGG | + | 15065:27463-27482 | MS.gene062815:CDS | 50.0% | |
| GCACTCTCCAATGCTACATC+TGG | + | 15065:27460-27479 | MS.gene062815:CDS | 50.0% | |
| GCCACAACCTCCATTTGATC+AGG | + | 15065:25108-25127 | MS.gene062815:CDS | 50.0% | |
| GTGATTGAGGCAGGTGTATG+TGG | + | 15065:25339-25358 | MS.gene062815:intron | 50.0% | |
| ! | GGAACTTTGATGGACAGGTG+AGG | + | 15065:25202-25221 | MS.gene062815:intron | 50.0% |
| ATCACAATATGCAGGGGCCG+GGG | - | 15065:25973-25992 | MS.gene062815:intergenic | 55.0% | |
| ATCCAAGCGGTGATTGAGGC+AGG | + | 15065:25330-25349 | MS.gene062815:intron | 55.0% | |
| CATCACAATATGCAGGGGCC+GGG | - | 15065:25974-25993 | MS.gene062815:intergenic | 55.0% | |
| GACCAGAGGAGCAATCAGTC+CGG | - | 15065:27392-27411 | MS.gene062815:intergenic | 55.0% | |
| GATGAGTAAGTGGGGAACCC+CGG | + | 15065:25953-25972 | MS.gene062815:intron | 55.0% | |
| GGTACCGCCAGATGTAGCAT+TGG | - | 15065:27470-27489 | MS.gene062815:intergenic | 55.0% | |
| ! | AGTGCAGGGATCAGCACTGA+AGG | - | 15065:25486-25505 | MS.gene062815:intergenic | 55.0% |
| ! | GGGATCAGCACTGAAGGAGA+TGG | - | 15065:25480-25499 | MS.gene062815:intergenic | 55.0% |
| AGCCGGACTGATTGCTCCTC+TGG | + | 15065:27387-27406 | MS.gene062815:CDS | 60.0% | |
| ATCCCTGCACTTCGCACGGT+GGG | + | 15065:25495-25514 | MS.gene062815:CDS | 60.0% | |
| CACCTGCCTCAATCACCGCT+TGG | - | 15065:25335-25354 | MS.gene062815:intergenic | 60.0% | |
| GCTGATCCCTGCACTTCGCA+CGG | + | 15065:25491-25510 | MS.gene062815:CDS | 60.0% | |
| GGCAGGTGTATGTGGCAGAC+TGG | + | 15065:25347-25366 | MS.gene062815:intron | 60.0% | |
| GGGAGATGATGCGCAGACTC+AGG | + | 15065:25530-25549 | MS.gene062815:CDS | 60.0% | |
| GTGCCCAGCATGCATCTGTC+AGG | - | 15065:25278-25297 | MS.gene062815:intergenic | 60.0% | |
| TTCCCACCGTGCGAAGTGCA+GGG | - | 15065:25500-25519 | MS.gene062815:intergenic | 60.0% | |
| TTTCCCACCGTGCGAAGTGC+AGG | - | 15065:25501-25520 | MS.gene062815:intergenic | 60.0% | |
| ! | CGCTCAAGAGCTGGAAGTGC+TGG | - | 15065:25228-25247 | MS.gene062815:intergenic | 60.0% |
| GATCCCTGCACTTCGCACGG+TGG | + | 15065:25494-25513 | MS.gene062815:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| 15065 | gene | 25071 | 27516 | 25071 | ID=MS.gene062815 |
| 15065 | mRNA | 25071 | 27516 | 25071 | ID=MS.gene062815.t1;Parent=MS.gene062815 |
| 15065 | exon | 25071 | 25129 | 25071 | ID=MS.gene062815.t1.exon1;Parent=MS.gene062815.t1 |
| 15065 | CDS | 25071 | 25129 | 25071 | ID=cds.MS.gene062815.t1;Parent=MS.gene062815.t1 |
| 15065 | exon | 25473 | 25551 | 25473 | ID=MS.gene062815.t1.exon2;Parent=MS.gene062815.t1 |
| 15065 | CDS | 25473 | 25551 | 25473 | ID=cds.MS.gene062815.t1;Parent=MS.gene062815.t1 |
| 15065 | exon | 26810 | 26938 | 26810 | ID=MS.gene062815.t1.exon3;Parent=MS.gene062815.t1 |
| 15065 | CDS | 26810 | 26938 | 26810 | ID=cds.MS.gene062815.t1;Parent=MS.gene062815.t1 |
| 15065 | exon | 27376 | 27516 | 27376 | ID=MS.gene062815.t1.exon4;Parent=MS.gene062815.t1 |
| 15065 | CDS | 27376 | 27516 | 27376 | ID=cds.MS.gene062815.t1;Parent=MS.gene062815.t1 |
| Gene Sequence |
| Protein sequence |
