Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene064185.t1 | XP_013455584.1 | 97.4 | 154 | 4 | 0 | 1 | 154 | 1 | 154 | 2.50E-79 | 304.7 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene064185.t1 | Q976C3 | 30.8 | 143 | 86 | 4 | 17 | 147 | 22 | 163 | 4.6e-10 | 65.9 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene064185.t1 | G7ZX36 | 97.4 | 154 | 4 | 0 | 1 | 154 | 1 | 154 | 1.8e-79 | 304.7 |
TFs/TRs:
Gene ID | Type | Classification |
---|---|---|
MS.gene064185.t1 | TR | GNAT |
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene049254 | MS.gene064185 | 0.819653 | 1.04E-52 | -1.69E-46 |
MS.gene049404 | MS.gene064185 | 0.830747 | 2.47E-55 | -1.69E-46 |
MS.gene049825 | MS.gene064185 | 0.805957 | 1.04E-49 | -1.69E-46 |
MS.gene049873 | MS.gene064185 | 0.817558 | 3.10E-52 | -1.69E-46 |
MS.gene050026 | MS.gene064185 | 0.824383 | 8.32E-54 | -1.69E-46 |
MS.gene050201 | MS.gene064185 | 0.808707 | 2.71E-50 | -1.69E-46 |
MS.gene050273 | MS.gene064185 | 0.825749 | 3.96E-54 | -1.69E-46 |
MS.gene050442 | MS.gene064185 | 0.802123 | 6.51E-49 | -1.69E-46 |
MS.gene050559 | MS.gene064185 | 0.82184 | 3.26E-53 | -1.69E-46 |
MS.gene050561 | MS.gene064185 | 0.817656 | 2.95E-52 | -1.69E-46 |
MS.gene050562 | MS.gene064185 | 0.803884 | 2.82E-49 | -1.69E-46 |
MS.gene050750 | MS.gene064185 | 0.805037 | 1.62E-49 | -1.69E-46 |
MS.gene050807 | MS.gene064185 | 0.832014 | 1.20E-55 | -1.69E-46 |
MS.gene050953 | MS.gene064185 | 0.803043 | 4.21E-49 | -1.69E-46 |
MS.gene051279 | MS.gene064185 | 0.812583 | 3.94E-51 | -1.69E-46 |
MS.gene051719 | MS.gene064185 | 0.816764 | 4.67E-52 | -1.69E-46 |
MS.gene051720 | MS.gene064185 | 0.810661 | 1.03E-50 | -1.69E-46 |
MS.gene051744 | MS.gene064185 | 0.800774 | 1.23E-48 | -1.69E-46 |
MS.gene052519 | MS.gene064185 | 0.837907 | 3.94E-57 | -1.69E-46 |
MS.gene052582 | MS.gene064185 | 0.849268 | 3.61E-60 | -1.69E-46 |
MS.gene052584 | MS.gene064185 | 0.837006 | 6.71E-57 | -1.69E-46 |
MS.gene052773 | MS.gene064185 | 0.809465 | 1.87E-50 | -1.69E-46 |
MS.gene053006 | MS.gene064185 | 0.800214 | 1.60E-48 | -1.69E-46 |
MS.gene053154 | MS.gene064185 | 0.802593 | 5.21E-49 | -1.69E-46 |
MS.gene053166 | MS.gene064185 | 0.811794 | 5.86E-51 | -1.69E-46 |
MS.gene053226 | MS.gene064185 | 0.810702 | 1.01E-50 | -1.69E-46 |
MS.gene053678 | MS.gene064185 | 0.806125 | 9.57E-50 | -1.69E-46 |
MS.gene05414 | MS.gene064185 | 0.818506 | 1.89E-52 | -1.69E-46 |
MS.gene05415 | MS.gene064185 | 0.85557 | 5.77E-62 | -1.69E-46 |
MS.gene05423 | MS.gene064185 | 0.806919 | 6.51E-50 | -1.69E-46 |
MS.gene054651 | MS.gene064185 | 0.829375 | 5.33E-55 | -1.69E-46 |
MS.gene055227 | MS.gene064185 | 0.800396 | 1.47E-48 | -1.69E-46 |
MS.gene055357 | MS.gene064185 | 0.800382 | 1.48E-48 | -1.69E-46 |
MS.gene055466 | MS.gene064185 | 0.806603 | 7.59E-50 | -1.69E-46 |
MS.gene055778 | MS.gene064185 | 0.803412 | 3.53E-49 | -1.69E-46 |
MS.gene055818 | MS.gene064185 | 0.82452 | 7.72E-54 | -1.69E-46 |
MS.gene056366 | MS.gene064185 | 0.825324 | 4.99E-54 | -1.69E-46 |
MS.gene057021 | MS.gene064185 | 0.814405 | 1.57E-51 | -1.69E-46 |
MS.gene057060 | MS.gene064185 | 0.848744 | 5.04E-60 | -1.69E-46 |
MS.gene057208 | MS.gene064185 | 0.80672 | 7.17E-50 | -1.69E-46 |
MS.gene057314 | MS.gene064185 | 0.805216 | 1.49E-49 | -1.69E-46 |
MS.gene057414 | MS.gene064185 | 0.807915 | 4.00E-50 | -1.69E-46 |
MS.gene057444 | MS.gene064185 | 0.82343 | 1.39E-53 | -1.69E-46 |
MS.gene058037 | MS.gene064185 | 0.811472 | 6.88E-51 | -1.69E-46 |
MS.gene058625 | MS.gene064185 | 0.815162 | 1.06E-51 | -1.69E-46 |
MS.gene058979 | MS.gene064185 | 0.802233 | 6.18E-49 | -1.69E-46 |
MS.gene059015 | MS.gene064185 | 0.805483 | 1.31E-49 | -1.69E-46 |
MS.gene059272 | MS.gene064185 | 0.804824 | 1.79E-49 | -1.69E-46 |
MS.gene05954 | MS.gene064185 | 0.854137 | 1.50E-61 | -1.69E-46 |
MS.gene059569 | MS.gene064185 | 0.802661 | 5.05E-49 | -1.69E-46 |
MS.gene059584 | MS.gene064185 | 0.801174 | 1.02E-48 | -1.69E-46 |
MS.gene059625 | MS.gene064185 | 0.801513 | 8.69E-49 | -1.69E-46 |
MS.gene060137 | MS.gene064185 | -0.803908 | 2.78E-49 | -1.69E-46 |
MS.gene060322 | MS.gene064185 | 0.801191 | 1.01E-48 | -1.69E-46 |
MS.gene060429 | MS.gene064185 | 0.811124 | 8.19E-51 | -1.69E-46 |
MS.gene060521 | MS.gene064185 | 0.848188 | 7.18E-60 | -1.69E-46 |
MS.gene060572 | MS.gene064185 | 0.818535 | 1.86E-52 | -1.69E-46 |
MS.gene060634 | MS.gene064185 | -0.84453 | 7.14E-59 | -1.69E-46 |
MS.gene061040 | MS.gene064185 | -0.806625 | 7.51E-50 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene064185.t1 | MTR_4g046047 | 97.403 | 154 | 4 | 0 | 1 | 154 | 1 | 154 | 6.19e-111 | 311 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene064185.t1 | AT1G03650 | 69.737 | 152 | 43 | 1 | 6 | 154 | 6 | 157 | 3.24e-75 | 221 |
Find 27 sgRNAs with CRISPR-Local
Find 79 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CAGGTTATGTCATGTATTCT+TGG | 0.193464 | 4.2:-56202470 | MS.gene064185:CDS |
AGTGGAAGAGATAGTGAAAT+TGG | 0.247431 | 4.2:-56202598 | MS.gene064185:CDS |
CACGTTGATGGTCAACTTGC+AGG | 0.274626 | 4.2:-56202489 | MS.gene064185:CDS |
CATGTTGACTGTTTAGTTGA+AGG | 0.336698 | 4.2:-56201211 | MS.gene064185:CDS |
GAAGCGAGTGATTCGTGTTT+GGG | 0.367842 | 4.2:+56202561 | None:intergenic |
TTGCTTTATCTTCACGTTGA+TGG | 0.371007 | 4.2:-56202501 | MS.gene064185:CDS |
GGAAGCGAGTGATTCGTGTT+TGG | 0.373847 | 4.2:+56202560 | None:intergenic |
TGGACTTCGATTCAAATTGA+AGG | 0.474763 | 4.2:-56201150 | None:intergenic |
GCAGAACAAGAAAAGTTTCA+CGG | 0.515102 | 4.2:-56201297 | MS.gene064185:CDS |
AAATGCTTATAGAATGTACT+TGG | 0.517363 | 4.2:-56201170 | MS.gene064185:CDS |
CAATGGAGGAGGCAAGGACA+CGG | 0.532439 | 4.2:-56201352 | MS.gene064185:CDS |
GTAGTTGGAACCTGCGAGCT+TGG | 0.534236 | 4.2:+56202422 | None:intergenic |
GCTTCTATCACCAAGCTCGC+AGG | 0.549548 | 4.2:-56202432 | MS.gene064185:intron |
AAGGAGCAATGGAGGAGGCA+AGG | 0.558770 | 4.2:-56201358 | MS.gene064185:CDS |
TGCTTCACGTCGATCCGTTG+AGG | 0.562820 | 4.2:-56201270 | MS.gene064185:CDS |
ATAGAAGCATACAATGAAGA+AGG | 0.562971 | 4.2:+56202447 | None:intergenic |
CAGAAACAGTGGTAAAGTAG+TGG | 0.572015 | 4.2:-56202616 | MS.gene064185:CDS |
CGCATGAGTGATGGCAAATG+TGG | 0.573974 | 4.2:-56202655 | None:intergenic |
CTTCTGTAGTGAAGGAGCAA+TGG | 0.596774 | 4.2:-56201369 | MS.gene064185:intron |
CTGAATCTGTACAAGAAGCA+TGG | 0.599242 | 4.2:-56201238 | MS.gene064185:CDS |
CTGTAGTGAAGGAGCAATGG+AGG | 0.602271 | 4.2:-56201366 | MS.gene064185:intron |
TAGTGAAGGAGCAATGGAGG+AGG | 0.603189 | 4.2:-56201363 | MS.gene064185:CDS |
CGGAGAGGTTCTACTGAAAG+CGG | 0.611656 | 4.2:-56201332 | MS.gene064185:CDS |
TTCAGCGCAGGTGTCCTCAA+CGG | 0.620997 | 4.2:+56201256 | None:intergenic |
TTCTTGTACAGATTCAGCGC+AGG | 0.621123 | 4.2:+56201244 | None:intergenic |
AATGAACTTGACAGAAACAG+TGG | 0.667655 | 4.2:-56202627 | MS.gene064185:CDS |
GAGGAGGCAAGGACACGGAG+AGG | 0.683029 | 4.2:-56201347 | MS.gene064185:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | ATTAACTATCTTTAATATAA+GGG | - | chr4.2:56202304-56202323 | MS.gene064185:intron | 10.0% |
!! | CTAAACTATTAAAATATAAT+AGG | + | chr4.2:56202099-56202118 | None:intergenic | 10.0% |
!! | GATTAACTATCTTTAATATA+AGG | - | chr4.2:56202303-56202322 | MS.gene064185:intron | 15.0% |
!! | TTGAATAATAAGGGTAAATA+TGG | + | chr4.2:56201922-56201941 | None:intergenic | 20.0% |
!!! | ATGAAATGCTTTTAATTTGT+TGG | - | chr4.2:56202366-56202385 | MS.gene064185:intron | 20.0% |
!!! | ATTAAAAGCATTTCATTAGT+TGG | + | chr4.2:56202362-56202381 | None:intergenic | 20.0% |
!!! | TTAAAAGCATTTCATTAGTT+GGG | + | chr4.2:56202361-56202380 | None:intergenic | 20.0% |
! | AAATGCTTATAGAATGTACT+TGG | - | chr4.2:56202628-56202647 | MS.gene064185:CDS | 25.0% |
!! | AAAATTGTCTAAGTGTGTTT+TGG | - | chr4.2:56201441-56201460 | MS.gene064185:intron | 25.0% |
!! | GAGTCACTAAATTTTCAAAA+TGG | + | chr4.2:56201482-56201501 | None:intergenic | 25.0% |
!! | TAAAAGCTAAAAGCTCTTTT+TGG | + | chr4.2:56201732-56201751 | None:intergenic | 25.0% |
!!! | AGCTTTTGCTTTGAATAATA+AGG | + | chr4.2:56201932-56201951 | None:intergenic | 25.0% |
!!! | CAATTTTTCAAACAGCTTAT+AGG | + | chr4.2:56201428-56201447 | None:intergenic | 25.0% |
!!! | GCTTTTGCTTTGAATAATAA+GGG | + | chr4.2:56201931-56201950 | None:intergenic | 25.0% |
!!! | TTTGAGTTCATTTTCAAAGA+AGG | + | chr4.2:56201262-56201281 | None:intergenic | 25.0% |
AAATATAATAGGGCTCTGTT+TGG | + | chr4.2:56202088-56202107 | None:intergenic | 30.0% | |
ACAACATGGGTATGTAATAT+GGG | - | chr4.2:56202395-56202414 | MS.gene064185:intron | 30.0% | |
CAATACATCAACTTAGTTGT+TGG | - | chr4.2:56201670-56201689 | MS.gene064185:intron | 30.0% | |
TTGACAAAAAAAGCTCTGTT+TGG | - | chr4.2:56201773-56201792 | MS.gene064185:intron | 30.0% | |
! | AGCATAAAAAAGAGTGTAGT+TGG | + | chr4.2:56201394-56201413 | None:intergenic | 30.0% |
! | ATAGAAGCATACAATGAAGA+AGG | + | chr4.2:56201354-56201373 | None:intergenic | 30.0% |
! | GTATGTAATATGGGATGTTT+TGG | - | chr4.2:56202404-56202423 | MS.gene064185:intron | 30.0% |
! | TAACTTTTGTAAGTGCAACT+CGG | - | chr4.2:56201570-56201589 | MS.gene064185:intron | 30.0% |
AATGAACTTGACAGAAACAG+TGG | - | chr4.2:56201171-56201190 | MS.gene064185:CDS | 35.0% | |
ACGAGCTTATAGCTTATTTC+AGG | - | chr4.2:56201821-56201840 | MS.gene064185:intron | 35.0% | |
AGTGGAAGAGATAGTGAAAT+TGG | - | chr4.2:56201200-56201219 | MS.gene064185:CDS | 35.0% | |
CAATATCGACATTGTCAGTT+AGG | - | chr4.2:56202276-56202295 | MS.gene064185:intron | 35.0% | |
CAATGTCGATATTGTTAGGT+TGG | + | chr4.2:56202270-56202289 | None:intergenic | 35.0% | |
CACAACATGGGTATGTAATA+TGG | - | chr4.2:56202394-56202413 | MS.gene064185:intron | 35.0% | |
CAGGTTATGTCATGTATTCT+TGG | - | chr4.2:56201328-56201347 | MS.gene064185:CDS | 35.0% | |
CTGACAATGTCGATATTGTT+AGG | + | chr4.2:56202274-56202293 | None:intergenic | 35.0% | |
GAACTCAAAAAGAAGAACAG+TGG | - | chr4.2:56201273-56201292 | MS.gene064185:CDS | 35.0% | |
GATTTGAGCTAAAGGCTAAA+GGG | + | chr4.2:56201639-56201658 | None:intergenic | 35.0% | |
GCAGAACAAGAAAAGTTTCA+CGG | - | chr4.2:56202501-56202520 | MS.gene064185:CDS | 35.0% | |
TGATTTGAGCTAAAGGCTAA+AGG | + | chr4.2:56201640-56201659 | None:intergenic | 35.0% | |
TTGCTTTATCTTCACGTTGA+TGG | - | chr4.2:56201297-56201316 | MS.gene064185:CDS | 35.0% | |
TTGGATAATTACTCTCTCCT+AGG | - | chr4.2:56201689-56201708 | MS.gene064185:intron | 35.0% | |
TTGTGTGTGTGAATTTCATG+TGG | + | chr4.2:56202213-56202232 | None:intergenic | 35.0% | |
! | AAGCTAAAAGCTCTTTTTGG+TGG | + | chr4.2:56201729-56201748 | None:intergenic | 35.0% |
! | CATGTTGACTGTTTAGTTGA+AGG | - | chr4.2:56202587-56202606 | MS.gene064185:CDS | 35.0% |
! | GATAAGCTAGTTGAAGTGTT+TGG | + | chr4.2:56201969-56201988 | None:intergenic | 35.0% |
! | TTGTTGGTTAGTCACAACAT+GGG | - | chr4.2:56202382-56202401 | MS.gene064185:intron | 35.0% |
! | TTTGTTGGTTAGTCACAACA+TGG | - | chr4.2:56202381-56202400 | MS.gene064185:intron | 35.0% |
!! | ACTCAACTGATTTGAGCTAA+AGG | + | chr4.2:56201647-56201666 | None:intergenic | 35.0% |
!!! | TTTTGGTTCTTCTGTAGTGA+AGG | - | chr4.2:56202421-56202440 | MS.gene064185:intron | 35.0% |
AATTCACACACACAACTGCA+AGG | - | chr4.2:56202218-56202237 | MS.gene064185:intron | 40.0% | |
CAGAAACAGTGGTAAAGTAG+TGG | - | chr4.2:56201182-56201201 | MS.gene064185:CDS | 40.0% | |
CTGAATCTGTACAAGAAGCA+TGG | - | chr4.2:56202560-56202579 | MS.gene064185:CDS | 40.0% | |
GCATTTCATTAGTTGGGAGT+TGG | + | chr4.2:56202355-56202374 | None:intergenic | 40.0% | |
GGTAACACAAAAGCTCTGTT+TGG | - | chr4.2:56201794-56201813 | MS.gene064185:intron | 40.0% | |
! | GGTGATTGTCACTTCATCTT+CGG | + | chr4.2:56202192-56202211 | None:intergenic | 40.0% |
! | TTTTGTAAGTGCAACTCGGT+TGG | - | chr4.2:56201574-56201593 | MS.gene064185:intron | 40.0% |
AAGCTTGGACATTGGTATGC+AGG | - | chr4.2:56201598-56201617 | MS.gene064185:intron | 45.0% | |
ACACACAACTGCAAGGTCTT+AGG | - | chr4.2:56202225-56202244 | MS.gene064185:intron | 45.0% | |
AGCTTGGACATTGGTATGCA+GGG | - | chr4.2:56201599-56201618 | MS.gene064185:intron | 45.0% | |
CTTCTGTAGTGAAGGAGCAA+TGG | - | chr4.2:56202429-56202448 | MS.gene064185:intron | 45.0% | |
GAAGCGAGTGATTCGTGTTT+GGG | + | chr4.2:56201240-56201259 | None:intergenic | 45.0% | |
TGGTTTACCAAACAGAGCCT+AGG | + | chr4.2:56201709-56201728 | None:intergenic | 45.0% | |
TTCTTGTACAGATTCAGCGC+AGG | + | chr4.2:56202557-56202576 | None:intergenic | 45.0% | |
!! | TAAACTATTAAAATATAATA+GGG | + | chr4.2:56202098-56202117 | None:intergenic | 5.0% |
ACATTGGTATGCAGGGTTCG+GGG | - | chr4.2:56201606-56201625 | MS.gene064185:intron | 50.0% | |
ACTCTCTCCTAGGCTCTGTT+TGG | - | chr4.2:56201699-56201718 | MS.gene064185:intron | 50.0% | |
CGGAGAGGTTCTACTGAAAG+CGG | - | chr4.2:56202466-56202485 | MS.gene064185:CDS | 50.0% | |
CTGTAGTGAAGGAGCAATGG+AGG | - | chr4.2:56202432-56202451 | MS.gene064185:intron | 50.0% | |
GACATTGGTATGCAGGGTTC+GGG | - | chr4.2:56201605-56201624 | MS.gene064185:intron | 50.0% | |
GGAAGCGAGTGATTCGTGTT+TGG | + | chr4.2:56201241-56201260 | None:intergenic | 50.0% | |
GGACATTGGTATGCAGGGTT+CGG | - | chr4.2:56201604-56201623 | MS.gene064185:intron | 50.0% | |
TAGTGAAGGAGCAATGGAGG+AGG | - | chr4.2:56202435-56202454 | MS.gene064185:CDS | 50.0% | |
!! | CACGTTGATGGTCAACTTGC+AGG | - | chr4.2:56201309-56201328 | MS.gene064185:CDS | 50.0% |
!! | CGGTTGGTAAGCTTGGACAT+TGG | - | chr4.2:56201590-56201609 | MS.gene064185:intron | 50.0% |
!! | TGCAACTCGGTTGGTAAGCT+TGG | - | chr4.2:56201583-56201602 | MS.gene064185:intron | 50.0% |
AAGGAGCAATGGAGGAGGCA+AGG | - | chr4.2:56202440-56202459 | MS.gene064185:CDS | 55.0% | |
CAATGGAGGAGGCAAGGACA+CGG | - | chr4.2:56202446-56202465 | MS.gene064185:CDS | 55.0% | |
CATTGGTATGCAGGGTTCGG+GGG | - | chr4.2:56201607-56201626 | MS.gene064185:intron | 55.0% | |
GCTTCTATCACCAAGCTCGC+AGG | - | chr4.2:56201366-56201385 | MS.gene064185:intron | 55.0% | |
GTAGTTGGAACCTGCGAGCT+TGG | + | chr4.2:56201379-56201398 | None:intergenic | 55.0% | |
TGCTTCACGTCGATCCGTTG+AGG | - | chr4.2:56202528-56202547 | MS.gene064185:CDS | 55.0% | |
TTCAGCGCAGGTGTCCTCAA+CGG | + | chr4.2:56202545-56202564 | None:intergenic | 55.0% | |
GAGGAGGCAAGGACACGGAG+AGG | - | chr4.2:56202451-56202470 | MS.gene064185:CDS | 65.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr4.2 | gene | 56201153 | 56202667 | 56201153 | ID=MS.gene064185 |
chr4.2 | mRNA | 56201153 | 56202667 | 56201153 | ID=MS.gene064185.t1;Parent=MS.gene064185 |
chr4.2 | exon | 56202433 | 56202667 | 56202433 | ID=MS.gene064185.t1.exon1;Parent=MS.gene064185.t1 |
chr4.2 | CDS | 56202433 | 56202667 | 56202433 | ID=cds.MS.gene064185.t1;Parent=MS.gene064185.t1 |
chr4.2 | exon | 56201153 | 56201382 | 56201153 | ID=MS.gene064185.t1.exon2;Parent=MS.gene064185.t1 |
chr4.2 | CDS | 56201153 | 56201382 | 56201153 | ID=cds.MS.gene064185.t1;Parent=MS.gene064185.t1 |
Gene Sequence |
Protein sequence |