Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene065164.t1 | XP_013464759.1 | 93.7 | 287 | 5 | 3 | 1 | 277 | 83 | 366 | 7.70E-148 | 533.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene065164.t1 | Q754F0 | 27.5 | 171 | 120 | 1 | 100 | 266 | 8 | 178 | 8.6e-15 | 82.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene065164.t1 | A0A072V9S8 | 93.7 | 287 | 5 | 3 | 1 | 277 | 83 | 366 | 5.5e-148 | 533.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049356 | MS.gene065164 | 0.83398 | 3.90E-56 | -1.69E-46 |
| MS.gene049378 | MS.gene065164 | 0.839264 | 1.76E-57 | -1.69E-46 |
| MS.gene049758 | MS.gene065164 | 0.807176 | 5.75E-50 | -1.69E-46 |
| MS.gene050670 | MS.gene065164 | 0.837735 | 4.36E-57 | -1.69E-46 |
| MS.gene050971 | MS.gene065164 | 0.829866 | 4.05E-55 | -1.69E-46 |
| MS.gene052077 | MS.gene065164 | 0.870525 | 1.37E-66 | -1.69E-46 |
| MS.gene052188 | MS.gene065164 | 0.856822 | 2.48E-62 | -1.69E-46 |
| MS.gene052253 | MS.gene065164 | 0.802038 | 6.78E-49 | -1.69E-46 |
| MS.gene052340 | MS.gene065164 | 0.825983 | 3.48E-54 | -1.69E-46 |
| MS.gene053073 | MS.gene065164 | 0.805074 | 1.59E-49 | -1.69E-46 |
| MS.gene05316 | MS.gene065164 | 0.849997 | 2.26E-60 | -1.69E-46 |
| MS.gene053494 | MS.gene065164 | 0.825051 | 5.79E-54 | -1.69E-46 |
| MS.gene053577 | MS.gene065164 | 0.803953 | 2.73E-49 | -1.69E-46 |
| MS.gene053836 | MS.gene065164 | 0.811198 | 7.89E-51 | -1.69E-46 |
| MS.gene054123 | MS.gene065164 | 0.823186 | 1.59E-53 | -1.69E-46 |
| MS.gene054349 | MS.gene065164 | 0.837619 | 4.67E-57 | -1.69E-46 |
| MS.gene054930 | MS.gene065164 | 0.871832 | 5.06E-67 | -1.69E-46 |
| MS.gene055116 | MS.gene065164 | 0.818948 | 1.50E-52 | -1.69E-46 |
| MS.gene055505 | MS.gene065164 | 0.82287 | 1.88E-53 | -1.69E-46 |
| MS.gene05553 | MS.gene065164 | 0.811014 | 8.65E-51 | -1.69E-46 |
| MS.gene055701 | MS.gene065164 | 0.801212 | 1.00E-48 | -1.69E-46 |
| MS.gene056407 | MS.gene065164 | 0.813229 | 2.85E-51 | -1.69E-46 |
| MS.gene056511 | MS.gene065164 | 0.829609 | 4.68E-55 | -1.69E-46 |
| MS.gene056659 | MS.gene065164 | 0.811799 | 5.84E-51 | -1.69E-46 |
| MS.gene056719 | MS.gene065164 | 0.808426 | 3.12E-50 | -1.69E-46 |
| MS.gene057199 | MS.gene065164 | 0.839524 | 1.51E-57 | -1.69E-46 |
| MS.gene057396 | MS.gene065164 | 0.813478 | 2.51E-51 | -1.69E-46 |
| MS.gene057448 | MS.gene065164 | 0.814594 | 1.42E-51 | -1.69E-46 |
| MS.gene057449 | MS.gene065164 | 0.801328 | 9.48E-49 | -1.69E-46 |
| MS.gene057450 | MS.gene065164 | 0.816106 | 6.56E-52 | -1.69E-46 |
| MS.gene057609 | MS.gene065164 | 0.824344 | 8.49E-54 | -1.69E-46 |
| MS.gene057610 | MS.gene065164 | 0.843833 | 1.10E-58 | -1.69E-46 |
| MS.gene05761 | MS.gene065164 | 0.822419 | 2.39E-53 | -1.69E-46 |
| MS.gene057668 | MS.gene065164 | 0.811988 | 5.31E-51 | -1.69E-46 |
| MS.gene057929 | MS.gene065164 | 0.808112 | 3.63E-50 | -1.69E-46 |
| MS.gene058007 | MS.gene065164 | 0.800607 | 1.33E-48 | -1.69E-46 |
| MS.gene058075 | MS.gene065164 | 0.812026 | 5.21E-51 | -1.69E-46 |
| MS.gene058371 | MS.gene065164 | 0.823674 | 1.22E-53 | -1.69E-46 |
| MS.gene058651 | MS.gene065164 | 0.804908 | 1.72E-49 | -1.69E-46 |
| MS.gene058710 | MS.gene065164 | 0.825883 | 3.68E-54 | -1.69E-46 |
| MS.gene058928 | MS.gene065164 | 0.806875 | 6.65E-50 | -1.69E-46 |
| MS.gene058949 | MS.gene065164 | 0.852659 | 3.99E-61 | -1.69E-46 |
| MS.gene05907 | MS.gene065164 | 0.805406 | 1.36E-49 | -1.69E-46 |
| MS.gene059285 | MS.gene065164 | 0.837335 | 5.52E-57 | -1.69E-46 |
| MS.gene059366 | MS.gene065164 | 0.801397 | 9.18E-49 | -1.69E-46 |
| MS.gene059420 | MS.gene065164 | 0.806371 | 8.50E-50 | -1.69E-46 |
| MS.gene059688 | MS.gene065164 | 0.824089 | 9.75E-54 | -1.69E-46 |
| MS.gene059692 | MS.gene065164 | 0.811107 | 8.26E-51 | -1.69E-46 |
| MS.gene059695 | MS.gene065164 | 0.807785 | 4.27E-50 | -1.69E-46 |
| MS.gene059807 | MS.gene065164 | 0.86616 | 3.49E-65 | -1.69E-46 |
| MS.gene059870 | MS.gene065164 | 0.808758 | 2.65E-50 | -1.69E-46 |
| MS.gene059876 | MS.gene065164 | 0.825912 | 3.62E-54 | -1.69E-46 |
| MS.gene060495 | MS.gene065164 | 0.869819 | 2.33E-66 | -1.69E-46 |
| MS.gene060496 | MS.gene065164 | 0.8029 | 4.50E-49 | -1.69E-46 |
| MS.gene060940 | MS.gene065164 | 0.832845 | 7.49E-56 | -1.69E-46 |
| MS.gene060943 | MS.gene065164 | 0.815039 | 1.13E-51 | -1.69E-46 |
| MS.gene061002 | MS.gene065164 | 0.825174 | 5.41E-54 | -1.69E-46 |
| MS.gene061049 | MS.gene065164 | 0.837902 | 3.95E-57 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene065164.t1 | MTR_2g080040 | 93.728 | 287 | 5 | 3 | 1 | 277 | 83 | 366 | 0.0 | 540 |
| MS.gene065164.t1 | MTR_2g090155 | 70.968 | 248 | 68 | 1 | 27 | 274 | 57 | 300 | 4.85e-133 | 379 |
| MS.gene065164.t1 | MTR_2g090155 | 70.968 | 248 | 68 | 1 | 27 | 274 | 57 | 300 | 1.07e-132 | 379 |
| MS.gene065164.t1 | MTR_2g090155 | 69.355 | 248 | 67 | 2 | 27 | 274 | 57 | 295 | 6.91e-126 | 362 |
| MS.gene065164.t1 | MTR_1g075540 | 28.409 | 176 | 120 | 5 | 97 | 269 | 9 | 181 | 1.16e-15 | 73.6 |
| MS.gene065164.t1 | MTR_2g090170 | 72.000 | 50 | 13 | 1 | 215 | 263 | 20 | 69 | 3.21e-14 | 66.6 |
| MS.gene065164.t1 | MTR_6g038540 | 24.828 | 145 | 109 | 0 | 100 | 244 | 56 | 200 | 3.57e-14 | 70.9 |
| MS.gene065164.t1 | MTR_1g075540 | 29.268 | 164 | 110 | 5 | 97 | 257 | 9 | 169 | 3.67e-14 | 69.3 |
| MS.gene065164.t1 | MTR_1g106775 | 24.571 | 175 | 131 | 1 | 100 | 273 | 85 | 259 | 3.68e-13 | 68.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene065164.t1 | AT1G52870 | 75.281 | 267 | 61 | 3 | 15 | 276 | 83 | 349 | 2.06e-150 | 425 |
| MS.gene065164.t1 | AT4G03410 | 74.786 | 234 | 59 | 0 | 41 | 274 | 72 | 305 | 8.60e-138 | 393 |
| MS.gene065164.t1 | AT4G03410 | 74.786 | 234 | 59 | 0 | 41 | 274 | 72 | 305 | 9.09e-138 | 391 |
| MS.gene065164.t1 | AT1G52870 | 72.687 | 227 | 53 | 4 | 15 | 236 | 83 | 305 | 4.02e-120 | 346 |
| MS.gene065164.t1 | AT4G33905 | 24.260 | 169 | 128 | 0 | 100 | 268 | 86 | 254 | 7.65e-14 | 70.1 |
| MS.gene065164.t1 | AT5G43140 | 22.485 | 169 | 131 | 0 | 100 | 268 | 82 | 250 | 1.77e-13 | 68.9 |
| MS.gene065164.t1 | AT2G14860 | 25.767 | 163 | 121 | 0 | 100 | 262 | 77 | 239 | 4.86e-13 | 67.8 |
| MS.gene065164.t1 | AT4G14305 | 24.432 | 176 | 127 | 5 | 97 | 269 | 9 | 181 | 1.68e-11 | 62.4 |
| MS.gene065164.t1 | AT5G19750 | 23.121 | 173 | 131 | 2 | 100 | 272 | 118 | 288 | 2.73e-11 | 63.2 |
Find 61 sgRNAs with CRISPR-Local
Find 146 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TAGATATGATAGAGCTTATT+TGG | 0.132143 | 2.3:+17756386 | MS.gene065164:CDS |
| TTACTATTGATAGTGATTAT+TGG | 0.193346 | 2.3:+17754686 | MS.gene065164:CDS |
| GCTAGTATTGTTCTTGTTGC+TGG | 0.288636 | 2.3:+17754640 | MS.gene065164:CDS |
| CAGTTGAGCAAAGACTTCTT+TGG | 0.344032 | 2.3:+17756362 | MS.gene065164:CDS |
| CTTGTTGGATTTGCTCTACA+TGG | 0.353651 | 2.3:+17755850 | MS.gene065164:CDS |
| AATTCATTGAAAATATTGAT+TGG | 0.360409 | 2.3:-17756128 | None:intergenic |
| ATAAACTTACGTTGAAAGTA+TGG | 0.377879 | 2.3:-17756413 | None:intergenic |
| ACGACGCAAGTGAATGGATT+TGG | 0.380452 | 2.3:+17754502 | MS.gene065164:CDS |
| AAACTGCATGGTCGGCAGTT+TGG | 0.384594 | 2.3:+17756060 | MS.gene065164:CDS |
| ACACAACTGGTTAGCTTATG+AGG | 0.392465 | 2.3:+17755587 | MS.gene065164:CDS |
| TGATCGAAGGCAACTTTGAC+TGG | 0.394081 | 2.3:-17756038 | None:intergenic |
| CAAAGAAGTCTTTGCTCAAC+TGG | 0.399250 | 2.3:-17756361 | None:intergenic |
| TTGTTTATTCTGTAGGAGAC+TGG | 0.418497 | 2.3:+17755658 | MS.gene065164:CDS |
| AGATATGATAGAGCTTATTT+GGG | 0.418869 | 2.3:+17756387 | MS.gene065164:CDS |
| TATGGTCTACCTCACAAAAC+TGG | 0.429644 | 2.3:-17755894 | None:intergenic |
| AGTTGAGCAAAGACTTCTTT+GGG | 0.441026 | 2.3:+17756363 | MS.gene065164:CDS |
| CGTGCACGGATGTTCAGATC+AGG | 0.450132 | 2.3:+17755826 | MS.gene065164:CDS |
| TTGCCAAGATGGTGATTAGC+GGG | 0.450889 | 2.3:+17755634 | MS.gene065164:CDS |
| TTTGCTCATCTAATAACTTA+CGG | 0.455935 | 2.3:+17756331 | MS.gene065164:CDS |
| AGCATTTACTATACAGTTGT+GGG | 0.481625 | 2.3:+17756086 | MS.gene065164:CDS |
| TGAAGAGAATGTGGAGAGTG+TGG | 0.488302 | 2.3:+17754591 | MS.gene065164:CDS |
| GATATGCACCTCTACACAAC+TGG | 0.490397 | 2.3:+17755574 | MS.gene065164:CDS |
| AATGGATTTGGAGCGAATGA+AGG | 0.492577 | 2.3:+17754514 | MS.gene065164:CDS |
| TCGAGTGCTTCGGGTTTGGT+TGG | 0.494003 | 2.3:+17754559 | MS.gene065164:CDS |
| GTGACGACGACGCAAGTGAA+TGG | 0.496360 | 2.3:+17754496 | MS.gene065164:CDS |
| TAAGTTATTAGATGAGCAAA+TGG | 0.497633 | 2.3:-17756328 | None:intergenic |
| ACTACCCACCATCCTTTGTA+AGG | 0.501278 | 2.3:-17756014 | None:intergenic |
| AGCTATTTCCTTACAAAGGA+TGG | 0.507459 | 2.3:+17756006 | MS.gene065164:CDS |
| TGATTATTGCAGTGCTTCGA+AGG | 0.509560 | 2.3:+17755781 | MS.gene065164:intron |
| ATGTTCAGATCAGGGCTTGT+TGG | 0.511574 | 2.3:+17755835 | MS.gene065164:CDS |
| AACCCCGCTAATCACCATCT+TGG | 0.520776 | 2.3:-17755637 | None:intergenic |
| GAAGGTTTGTTATCGTTGGA+AGG | 0.524445 | 2.3:+17754532 | MS.gene065164:CDS |
| AGCGGGGTTGTTTATTCTGT+AGG | 0.524576 | 2.3:+17755651 | MS.gene065164:CDS |
| CAGCATTTACTATACAGTTG+TGG | 0.531133 | 2.3:+17756085 | MS.gene065164:CDS |
| GGAAGCTCTCAAGACAAATC+CGG | 0.548802 | 2.3:+17755608 | MS.gene065164:CDS |
| CTTCGATCAAACTGCATGGT+CGG | 0.558882 | 2.3:+17756052 | MS.gene065164:CDS |
| GAATGAAGGTTTGTTATCGT+TGG | 0.563825 | 2.3:+17754528 | MS.gene065164:CDS |
| GCCACATACCTCAGATGTAG+TGG | 0.573931 | 2.3:-17757118 | None:intergenic |
| TACAGGCAGGATGGAAGTTG+TGG | 0.575586 | 2.3:+17756305 | MS.gene065164:intron |
| CAGGAGCTATTTCCTTACAA+AGG | 0.576904 | 2.3:+17756002 | MS.gene065164:intron |
| TATTTCCTTACAAAGGATGG+TGG | 0.578819 | 2.3:+17756009 | MS.gene065164:CDS |
| AGGTTCTCTTACAGTCAACA+TGG | 0.583530 | 2.3:-17756168 | None:intergenic |
| TTTGCCAAGATGGTGATTAG+CGG | 0.591010 | 2.3:+17755633 | MS.gene065164:CDS |
| ACTTTCTTATACAGGCAGGA+TGG | 0.595260 | 2.3:+17756296 | MS.gene065164:intron |
| CGACCATGCAGTTTGATCGA+AGG | 0.598693 | 2.3:-17756051 | None:intergenic |
| TAATGAGAATGAAGAGAATG+TGG | 0.602012 | 2.3:+17754582 | MS.gene065164:CDS |
| TGTAGGAGACTGGATTGCAC+AGG | 0.610678 | 2.3:+17755668 | MS.gene065164:CDS |
| ATTTCCTTACAAAGGATGGT+GGG | 0.611721 | 2.3:+17756010 | MS.gene065164:CDS |
| AGGTGGAGATGGTGAATTAG+CGG | 0.614566 | 2.3:+17754474 | MS.gene065164:CDS |
| GTGGAGATGGAAGGTGGAGA+TGG | 0.619496 | 2.3:+17754463 | None:intergenic |
| TAAGCTAACCAGTTGTGTAG+AGG | 0.623564 | 2.3:-17755582 | None:intergenic |
| AGCGAAATCCACTACATCTG+AGG | 0.636729 | 2.3:+17757110 | MS.gene065164:CDS |
| AGCCGTGTGGAGATGGAAGG+TGG | 0.639866 | 2.3:+17754457 | None:intergenic |
| GGTTCTCTTACAGTCAACAT+GGG | 0.640571 | 2.3:-17756167 | None:intergenic |
| GTGCACGGATGTTCAGATCA+GGG | 0.649536 | 2.3:+17755827 | MS.gene065164:CDS |
| TTGCCTTCGATCAAACTGCA+TGG | 0.649875 | 2.3:+17756048 | MS.gene065164:CDS |
| GTGAGCCGTGTGGAGATGGA+AGG | 0.660357 | 2.3:+17754454 | None:intergenic |
| TGCCAAGATGGTGATTAGCG+GGG | 0.667655 | 2.3:+17755635 | MS.gene065164:CDS |
| GCATTTACTATACAGTTGTG+GGG | 0.671450 | 2.3:+17756087 | MS.gene065164:CDS |
| TGATTGGAGAATCAAAACGC+AGG | 0.680696 | 2.3:-17756112 | None:intergenic |
| GTTCTCTTACAGTCAACATG+GGG | 0.723534 | 2.3:-17756166 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAATAAAAACATAAAGTAA+AGG | - | chr2.3:17754914-17754933 | None:intergenic | 10.0% |
| !! | AATTCATTGAAAATATTGAT+TGG | - | chr2.3:17756131-17756150 | None:intergenic | 15.0% |
| !! | ATGATAAACACTTATCTATA+TGG | + | chr2.3:17756559-17756578 | MS.gene065164:intron | 20.0% |
| !! | GATTTGGAAATGATTAAATT+TGG | + | chr2.3:17754781-17754800 | MS.gene065164:intron | 20.0% |
| !!! | AATTTGCAATTTTATAGACT+AGG | + | chr2.3:17754829-17754848 | MS.gene065164:intron | 20.0% |
| !!! | CAACTTTAAATTAGCTTATA+AGG | - | chr2.3:17755385-17755404 | None:intergenic | 20.0% |
| !!! | CAATATTTTCAATGAATTGA+AGG | + | chr2.3:17756133-17756152 | MS.gene065164:CDS | 20.0% |
| !!! | CTTATAAGCTAATTTAAAGT+TGG | + | chr2.3:17755383-17755402 | MS.gene065164:intron | 20.0% |
| !!! | TTACTATTGATAGTGATTAT+TGG | + | chr2.3:17754686-17754705 | MS.gene065164:CDS | 20.0% |
| ! | AACACTTAATCAATTAGTGT+AGG | - | chr2.3:17756536-17756555 | None:intergenic | 25.0% |
| ! | AGATATGATAGAGCTTATTT+GGG | + | chr2.3:17756387-17756406 | MS.gene065164:CDS | 25.0% |
| ! | ATAAACTTACGTTGAAAGTA+TGG | - | chr2.3:17756416-17756435 | None:intergenic | 25.0% |
| ! | CGTATGGAAAAATATTTGTT+TGG | + | chr2.3:17755244-17755263 | MS.gene065164:intron | 25.0% |
| ! | GTAAACTTCTCATCAAAATT+AGG | + | chr2.3:17755155-17755174 | MS.gene065164:intron | 25.0% |
| ! | TAAGTTATTAGATGAGCAAA+TGG | - | chr2.3:17756331-17756350 | None:intergenic | 25.0% |
| ! | TAGATATGATAGAGCTTATT+TGG | + | chr2.3:17756386-17756405 | MS.gene065164:CDS | 25.0% |
| ! | TCAAGATAATCAAATTTGAC+TGG | - | chr2.3:17755484-17755503 | None:intergenic | 25.0% |
| ! | TTCCTTAAACTTTCTTATAC+AGG | + | chr2.3:17756288-17756307 | MS.gene065164:intron | 25.0% |
| ! | TTTGCTCATCTAATAACTTA+CGG | + | chr2.3:17756331-17756350 | MS.gene065164:CDS | 25.0% |
| !! | AAATATTTTTCCATACGCAT+TGG | - | chr2.3:17755241-17755260 | None:intergenic | 25.0% |
| !! | ATTACCATTTATTTGTTGCA+TGG | + | chr2.3:17756198-17756217 | MS.gene065164:intron | 25.0% |
| !! | CACGTTTAAATTAGCTTATT+TGG | - | chr2.3:17755428-17755447 | None:intergenic | 25.0% |
| AAAAACTAAGCCAATCCAAA+CGG | + | chr2.3:17755085-17755104 | MS.gene065164:intron | 30.0% | |
| AAAATAAGTCAATCCAAACC+CGG | - | chr2.3:17754855-17754874 | None:intergenic | 30.0% | |
| AATAAATGGTAATAGCCAGA+AGG | - | chr2.3:17756191-17756210 | None:intergenic | 30.0% | |
| ACTATACAATTTCTCCTAGA+TGG | - | chr2.3:17756471-17756490 | None:intergenic | 30.0% | |
| ACTTTCAACGTAAGTTTATC+TGG | + | chr2.3:17756417-17756436 | MS.gene065164:intron | 30.0% | |
| AGCATTTACTATACAGTTGT+GGG | + | chr2.3:17756086-17756105 | MS.gene065164:CDS | 30.0% | |
| ATGGAGATATGCTAATTAAG+TGG | + | chr2.3:17755966-17755985 | MS.gene065164:intron | 30.0% | |
| ATTCAAGAACAATGCAAGAA+AGG | - | chr2.3:17755936-17755955 | None:intergenic | 30.0% | |
| CAAATTTGACTGGATATACA+GGG | - | chr2.3:17755474-17755493 | None:intergenic | 30.0% | |
| GATTAAATTTGGTTGTACTG+TGG | + | chr2.3:17754792-17754811 | MS.gene065164:intron | 30.0% | |
| GGAAAAGAACATTGTTCATA+TGG | - | chr2.3:17755915-17755934 | None:intergenic | 30.0% | |
| GTTTCCATGCAACAAATAAA+TGG | - | chr2.3:17756205-17756224 | None:intergenic | 30.0% | |
| TAATGAGAATGAAGAGAATG+TGG | + | chr2.3:17754582-17754601 | MS.gene065164:CDS | 30.0% | |
| TATTATTCATAAGCTTGTCG+AGG | - | chr2.3:17755023-17755042 | None:intergenic | 30.0% | |
| TCAAATTTGACTGGATATAC+AGG | - | chr2.3:17755475-17755494 | None:intergenic | 30.0% | |
| TCATACTCAAAGATAGAATG+TGG | + | chr2.3:17756587-17756606 | MS.gene065164:intron | 30.0% | |
| TGCCTGTATAAGAAAGTTTA+AGG | - | chr2.3:17756293-17756312 | None:intergenic | 30.0% | |
| TTAAACTTTCTTATACAGGC+AGG | + | chr2.3:17756292-17756311 | MS.gene065164:intron | 30.0% | |
| TTCTTGAATTGTCTGACTTA+TGG | + | chr2.3:17755947-17755966 | MS.gene065164:intron | 30.0% | |
| ! | AAAGGAGCATACAGTTTATT+TGG | - | chr2.3:17756998-17757017 | None:intergenic | 30.0% |
| ! | ACTTGTGTTTTGTGATTGTT+TGG | - | chr2.3:17756727-17756746 | None:intergenic | 30.0% |
| ! | TGAATTTTTCCTTATCTGCT+AGG | + | chr2.3:17755501-17755520 | MS.gene065164:intron | 30.0% |
| !! | TTACTATTACCAGTTTTGTG+AGG | + | chr2.3:17755885-17755904 | MS.gene065164:CDS | 30.0% |
| !!! | CGAAGAACTATACTTTTTCT+TGG | - | chr2.3:17755347-17755366 | None:intergenic | 30.0% |
| AACACAAATCCTAGCAGATA+AGG | - | chr2.3:17755513-17755532 | None:intergenic | 35.0% | |
| AATCACTATACCGTTTGGAT+TGG | - | chr2.3:17755098-17755117 | None:intergenic | 35.0% | |
| AGCACTTGATCAATTAGTGT+AGG | - | chr2.3:17756770-17756789 | None:intergenic | 35.0% | |
| AGTCTATACATTTGCATGCA+GGG | + | chr2.3:17755312-17755331 | MS.gene065164:intron | 35.0% | |
| AGTTGAGCAAAGACTTCTTT+GGG | + | chr2.3:17756363-17756382 | MS.gene065164:CDS | 35.0% | |
| ATGTGTGAAAATGCACAGTA+TGG | + | chr2.3:17756504-17756523 | MS.gene065164:intron | 35.0% | |
| ATTTCCTTACAAAGGATGGT+GGG | + | chr2.3:17756010-17756029 | MS.gene065164:CDS | 35.0% | |
| CAGCATTTACTATACAGTTG+TGG | + | chr2.3:17756085-17756104 | MS.gene065164:CDS | 35.0% | |
| CTAGAAATCGACACAAAACT+TGG | - | chr2.3:17755125-17755144 | None:intergenic | 35.0% | |
| GCATTTACTATACAGTTGTG+GGG | + | chr2.3:17756087-17756106 | MS.gene065164:CDS | 35.0% | |
| GGCTAATCTAAATTAGCAAC+TGG | - | chr2.3:17755453-17755472 | None:intergenic | 35.0% | |
| TAGTCTATACATTTGCATGC+AGG | + | chr2.3:17755311-17755330 | MS.gene065164:intron | 35.0% | |
| TATTTCCTTACAAAGGATGG+TGG | + | chr2.3:17756009-17756028 | MS.gene065164:CDS | 35.0% | |
| TCCAAACGGTATAGTGATTA+TGG | + | chr2.3:17755099-17755118 | MS.gene065164:intron | 35.0% | |
| TGTGTGTGATTCTTTGGATT+TGG | + | chr2.3:17754765-17754784 | MS.gene065164:intron | 35.0% | |
| TTAGGTCATAGTTACCAACT+TGG | + | chr2.3:17755173-17755192 | MS.gene065164:intron | 35.0% | |
| TTGTTTATTCTGTAGGAGAC+TGG | + | chr2.3:17755658-17755677 | MS.gene065164:CDS | 35.0% | |
| TTTCATATACAGCTGAGTCT+CGG | + | chr2.3:17755710-17755729 | MS.gene065164:intron | 35.0% | |
| ! | AGCTATTTCCTTACAAAGGA+TGG | + | chr2.3:17756006-17756025 | MS.gene065164:CDS | 35.0% |
| ! | CAATCTTTTATCATGCACTG+TGG | + | chr2.3:17755746-17755765 | MS.gene065164:intron | 35.0% |
| ! | CTGCATAGAATTTTCCATCT+AGG | + | chr2.3:17756454-17756473 | MS.gene065164:intron | 35.0% |
| ! | TGCAATTTTATAGACTAGGC+CGG | + | chr2.3:17754833-17754852 | MS.gene065164:intron | 35.0% |
| !! | GAATGAAGGTTTGTTATCGT+TGG | + | chr2.3:17754528-17754547 | MS.gene065164:CDS | 35.0% |
| !!! | GTTTTTAGCGTATGCAAAAC+TGG | - | chr2.3:17755071-17755090 | None:intergenic | 35.0% |
| !!! | TTTTGTGTCGATTTCTAGCT+TGG | + | chr2.3:17755127-17755146 | MS.gene065164:intron | 35.0% |
| !!! | TTTTTGAGTTTGATCGTGCA+CGG | + | chr2.3:17755812-17755831 | MS.gene065164:CDS | 35.0% |
| AAGCTTGTCGAGGTAGTTTA+TGG | - | chr2.3:17755013-17755032 | None:intergenic | 40.0% | |
| ACCACTGCAGAGATATACAA+AGG | - | chr2.3:17757016-17757035 | None:intergenic | 40.0% | |
| ACTTGTGTCGTGTAACTGTT+TGG | - | chr2.3:17756961-17756980 | None:intergenic | 40.0% | |
| ACTTTCTTATACAGGCAGGA+TGG | + | chr2.3:17756296-17756315 | MS.gene065164:intron | 40.0% | |
| AGGTTCTCTTACAGTCAACA+TGG | - | chr2.3:17756171-17756190 | None:intergenic | 40.0% | |
| ATAGCTCCTGGATAAATGAG+AGG | - | chr2.3:17755992-17756011 | None:intergenic | 40.0% | |
| ATCACCATCTTGGCAAAAAC+CGG | - | chr2.3:17755630-17755649 | None:intergenic | 40.0% | |
| CAAAGAAGTCTTTGCTCAAC+TGG | - | chr2.3:17756364-17756383 | None:intergenic | 40.0% | |
| CAAGATAATGTTACCACCAC+TGG | - | chr2.3:17756248-17756267 | None:intergenic | 40.0% | |
| CAGTTGAGCAAAGACTTCTT+TGG | + | chr2.3:17756362-17756381 | MS.gene065164:CDS | 40.0% | |
| CTGCTAGGATTTGTGTTTCT+TGG | + | chr2.3:17755516-17755535 | MS.gene065164:intron | 40.0% | |
| CTTTGTAAGGAAATAGCTCC+TGG | - | chr2.3:17756004-17756023 | None:intergenic | 40.0% | |
| GCACGATCAAACTCAAAAAG+AGG | - | chr2.3:17755811-17755830 | None:intergenic | 40.0% | |
| GCCATAATCACTATACCGTT+TGG | - | chr2.3:17755103-17755122 | None:intergenic | 40.0% | |
| GCTAGTATTGTTCTTGTTGC+TGG | + | chr2.3:17754640-17754659 | MS.gene065164:CDS | 40.0% | |
| GGTTCTCTTACAGTCAACAT+GGG | - | chr2.3:17756170-17756189 | None:intergenic | 40.0% | |
| GTTCTCTTACAGTCAACATG+GGG | - | chr2.3:17756169-17756188 | None:intergenic | 40.0% | |
| TAAGCTAACCAGTTGTGTAG+AGG | - | chr2.3:17755585-17755604 | None:intergenic | 40.0% | |
| TATACATTTGCATGCAGGGA+GGG | + | chr2.3:17755316-17755335 | MS.gene065164:intron | 40.0% | |
| TATGGTCTACCTCACAAAAC+TGG | - | chr2.3:17755897-17755916 | None:intergenic | 40.0% | |
| TCCTTTGTATATCTCTGCAG+TGG | + | chr2.3:17757012-17757031 | MS.gene065164:intron | 40.0% | |
| TGATTATTGCAGTGCTTCGA+AGG | + | chr2.3:17755781-17755800 | MS.gene065164:intron | 40.0% | |
| TGATTGGAGAATCAAAACGC+AGG | - | chr2.3:17756115-17756134 | None:intergenic | 40.0% | |
| TGTGTGTGTGTGTGATTCTT+TGG | + | chr2.3:17754759-17754778 | MS.gene065164:intron | 40.0% | |
| TTGACTGTAAGAGAACCTTC+TGG | + | chr2.3:17756173-17756192 | MS.gene065164:intron | 40.0% | |
| TTTGCCAAGATGGTGATTAG+CGG | + | chr2.3:17755633-17755652 | MS.gene065164:CDS | 40.0% | |
| ! | AAATCCGGTTTTTGCCAAGA+TGG | + | chr2.3:17755623-17755642 | MS.gene065164:CDS | 40.0% |
| ! | AATGGATTTGGAGCGAATGA+AGG | + | chr2.3:17754514-17754533 | MS.gene065164:CDS | 40.0% |
| ! | CAGGAGCTATTTCCTTACAA+AGG | + | chr2.3:17756002-17756021 | MS.gene065164:intron | 40.0% |
| ! | CTTGTTGGATTTGCTCTACA+TGG | + | chr2.3:17755850-17755869 | MS.gene065164:CDS | 40.0% |
| ! | GCAATTTTATAGACTAGGCC+GGG | + | chr2.3:17754834-17754853 | MS.gene065164:intron | 40.0% |
| !! | ACACAACTGGTTAGCTTATG+AGG | + | chr2.3:17755587-17755606 | MS.gene065164:CDS | 40.0% |
| !! | ATTCTTTTTCTGAGAGCCAG+TGG | + | chr2.3:17756229-17756248 | MS.gene065164:intron | 40.0% |
| !! | GAAGGTTTGTTATCGTTGGA+AGG | + | chr2.3:17754532-17754551 | MS.gene065164:CDS | 40.0% |
| !! | GTGTTTCTTGGTGCTATGTA+GGG | + | chr2.3:17755528-17755547 | MS.gene065164:intron | 40.0% |
| !! | TGTGTTTCTTGGTGCTATGT+AGG | + | chr2.3:17755527-17755546 | MS.gene065164:intron | 40.0% |
| !! | TTCGAAGCACTGCAATAATC+AGG | - | chr2.3:17755782-17755801 | None:intergenic | 40.0% |
| AAGTGGCCTCTCATTTATCC+AGG | + | chr2.3:17755983-17756002 | MS.gene065164:intron | 45.0% | |
| ACTACCCACCATCCTTTGTA+AGG | - | chr2.3:17756017-17756036 | None:intergenic | 45.0% | |
| AGCGGGGTTGTTTATTCTGT+AGG | + | chr2.3:17755651-17755670 | MS.gene065164:CDS | 45.0% | |
| AGGTGGAGATGGTGAATTAG+CGG | + | chr2.3:17754474-17754493 | MS.gene065164:CDS | 45.0% | |
| ATGTTCAGATCAGGGCTTGT+TGG | + | chr2.3:17755835-17755854 | MS.gene065164:CDS | 45.0% | |
| CTATACATTTGCATGCAGGG+AGG | + | chr2.3:17755315-17755334 | MS.gene065164:intron | 45.0% | |
| CTTCGATCAAACTGCATGGT+CGG | + | chr2.3:17756052-17756071 | MS.gene065164:CDS | 45.0% | |
| GATATGCACCTCTACACAAC+TGG | + | chr2.3:17755574-17755593 | MS.gene065164:CDS | 45.0% | |
| GGAAGCTCTCAAGACAAATC+CGG | + | chr2.3:17755608-17755627 | MS.gene065164:CDS | 45.0% | |
| TGAAGAGAATGTGGAGAGTG+TGG | + | chr2.3:17754591-17754610 | MS.gene065164:CDS | 45.0% | |
| TGATCGAAGGCAACTTTGAC+TGG | - | chr2.3:17756041-17756060 | None:intergenic | 45.0% | |
| TTGCCAAGATGGTGATTAGC+GGG | + | chr2.3:17755634-17755653 | MS.gene065164:CDS | 45.0% | |
| TTGCCTTCGATCAAACTGCA+TGG | + | chr2.3:17756048-17756067 | MS.gene065164:CDS | 45.0% | |
| TTTATAGACTAGGCCGGGTT+TGG | + | chr2.3:17754839-17754858 | MS.gene065164:intron | 45.0% | |
| ! | ACGACGCAAGTGAATGGATT+TGG | + | chr2.3:17754502-17754521 | MS.gene065164:CDS | 45.0% |
| ! | TTTCCATACGCATTGGCCAA+GGG | - | chr2.3:17755234-17755253 | None:intergenic | 45.0% |
| !! | ACTTGAGTTGATCGATCCCT+TGG | + | chr2.3:17755215-17755234 | MS.gene065164:intron | 45.0% |
| !! | TCTCTGCAGTGGTTCTAACA+TGG | + | chr2.3:17757023-17757042 | MS.gene065164:intron | 45.0% |
| !! | TTCTTGGTGCTATGTAGGGA+TGG | + | chr2.3:17755532-17755551 | MS.gene065164:intron | 45.0% |
| !! | TTTTCCATACGCATTGGCCA+AGG | - | chr2.3:17755235-17755254 | None:intergenic | 45.0% |
| !!! | GAAGGTTTTTCGAGTGCTTC+GGG | + | chr2.3:17754550-17754569 | MS.gene065164:CDS | 45.0% |
| !!! | GGAAGGTTTTTCGAGTGCTT+CGG | + | chr2.3:17754549-17754568 | MS.gene065164:CDS | 45.0% |
| !!! | TTTTTCGAGTGCTTCGGGTT+TGG | + | chr2.3:17754555-17754574 | MS.gene065164:CDS | 45.0% |
| AAACTGCATGGTCGGCAGTT+TGG | + | chr2.3:17756060-17756079 | MS.gene065164:CDS | 50.0% | |
| AACCCCGCTAATCACCATCT+TGG | - | chr2.3:17755640-17755659 | None:intergenic | 50.0% | |
| CGACCATGCAGTTTGATCGA+AGG | - | chr2.3:17756054-17756073 | None:intergenic | 50.0% | |
| GTGCACGGATGTTCAGATCA+GGG | + | chr2.3:17755827-17755846 | MS.gene065164:CDS | 50.0% | |
| TACAGGCAGGATGGAAGTTG+TGG | + | chr2.3:17756305-17756324 | MS.gene065164:intron | 50.0% | |
| TGCCAAGATGGTGATTAGCG+GGG | + | chr2.3:17755635-17755654 | MS.gene065164:CDS | 50.0% | |
| TGTAGGAGACTGGATTGCAC+AGG | + | chr2.3:17755668-17755687 | MS.gene065164:CDS | 50.0% | |
| !! | CTTTTTCTGAGAGCCAGTGG+TGG | + | chr2.3:17756232-17756251 | MS.gene065164:intron | 50.0% |
| CGTGCACGGATGTTCAGATC+AGG | + | chr2.3:17755826-17755845 | MS.gene065164:CDS | 55.0% | |
| GATCCCTTGGCCAATGCGTA+TGG | + | chr2.3:17755228-17755247 | MS.gene065164:intron | 55.0% | |
| GTGACGACGACGCAAGTGAA+TGG | + | chr2.3:17754496-17754515 | MS.gene065164:CDS | 55.0% | |
| ! | TCGAGTGCTTCGGGTTTGGT+TGG | + | chr2.3:17754559-17754578 | MS.gene065164:CDS | 55.0% |
| CCACTCGCGTCACACCAAGT+TGG | - | chr2.3:17755190-17755209 | None:intergenic | 60.0% | |
| !! | CCAACTTGGTGTGACGCGAG+TGG | + | chr2.3:17755187-17755206 | MS.gene065164:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2.3 | gene | 17754469 | 17757131 | 17754469 | ID=MS.gene065164 |
| chr2.3 | mRNA | 17754469 | 17757131 | 17754469 | ID=MS.gene065164.t1;Parent=MS.gene065164 |
| chr2.3 | exon | 17754469 | 17754711 | 17754469 | ID=MS.gene065164.t1.exon1;Parent=MS.gene065164.t1 |
| chr2.3 | CDS | 17754469 | 17754711 | 17754469 | ID=cds.MS.gene065164.t1;Parent=MS.gene065164.t1 |
| chr2.3 | exon | 17755549 | 17755689 | 17755549 | ID=MS.gene065164.t1.exon2;Parent=MS.gene065164.t1 |
| chr2.3 | CDS | 17755549 | 17755689 | 17755549 | ID=cds.MS.gene065164.t1;Parent=MS.gene065164.t1 |
| chr2.3 | exon | 17755793 | 17755906 | 17755793 | ID=MS.gene065164.t1.exon3;Parent=MS.gene065164.t1 |
| chr2.3 | CDS | 17755793 | 17755906 | 17755793 | ID=cds.MS.gene065164.t1;Parent=MS.gene065164.t1 |
| chr2.3 | exon | 17756005 | 17756178 | 17756005 | ID=MS.gene065164.t1.exon4;Parent=MS.gene065164.t1 |
| chr2.3 | CDS | 17756005 | 17756178 | 17756005 | ID=cds.MS.gene065164.t1;Parent=MS.gene065164.t1 |
| chr2.3 | exon | 17756310 | 17756425 | 17756310 | ID=MS.gene065164.t1.exon5;Parent=MS.gene065164.t1 |
| chr2.3 | CDS | 17756310 | 17756425 | 17756310 | ID=cds.MS.gene065164.t1;Parent=MS.gene065164.t1 |
| chr2.3 | exon | 17757089 | 17757131 | 17757089 | ID=MS.gene065164.t1.exon6;Parent=MS.gene065164.t1 |
| chr2.3 | CDS | 17757089 | 17757131 | 17757089 | ID=cds.MS.gene065164.t1;Parent=MS.gene065164.t1 |
| Gene Sequence |
| Protein sequence |
