Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene069760.t1 | XP_003607233.2 | 96.9 | 896 | 27 | 1 | 63 | 958 | 62 | 956 | 0.00E+00 | 1661 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene069760.t1 | Q9Y5Q9 | 22.8 | 817 | 518 | 11 | 172 | 958 | 153 | 886 | 1.5e-58 | 229.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene069760.t1 | G7JNI9 | 96.9 | 896 | 27 | 1 | 63 | 958 | 62 | 956 | 0.0e+00 | 1661.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049142 | MS.gene069760 | 0.813439 | 2.56E-51 | -1.69E-46 |
| MS.gene049254 | MS.gene069760 | 0.837876 | 4.01E-57 | -1.69E-46 |
| MS.gene049404 | MS.gene069760 | 0.803493 | 3.40E-49 | -1.69E-46 |
| MS.gene049435 | MS.gene069760 | 0.817821 | 2.70E-52 | -1.69E-46 |
| MS.gene049850 | MS.gene069760 | 0.822335 | 2.50E-53 | -1.69E-46 |
| MS.gene050156 | MS.gene069760 | 0.818891 | 1.55E-52 | -1.69E-46 |
| MS.gene050442 | MS.gene069760 | 0.829454 | 5.10E-55 | -1.69E-46 |
| MS.gene050719 | MS.gene069760 | 0.804468 | 2.13E-49 | -1.69E-46 |
| MS.gene050721 | MS.gene069760 | 0.80659 | 7.64E-50 | -1.69E-46 |
| MS.gene050844 | MS.gene069760 | 0.806251 | 9.01E-50 | -1.69E-46 |
| MS.gene051247 | MS.gene069760 | 0.806324 | 8.70E-50 | -1.69E-46 |
| MS.gene051279 | MS.gene069760 | 0.802387 | 5.75E-49 | -1.69E-46 |
| MS.gene051744 | MS.gene069760 | 0.826583 | 2.51E-54 | -1.69E-46 |
| MS.gene052020 | MS.gene069760 | 0.803108 | 4.08E-49 | -1.69E-46 |
| MS.gene052323 | MS.gene069760 | 0.826755 | 2.28E-54 | -1.69E-46 |
| MS.gene052488 | MS.gene069760 | 0.800781 | 1.23E-48 | -1.69E-46 |
| MS.gene052611 | MS.gene069760 | 0.813053 | 3.11E-51 | -1.69E-46 |
| MS.gene052665 | MS.gene069760 | 0.810708 | 1.01E-50 | -1.69E-46 |
| MS.gene052773 | MS.gene069760 | 0.816801 | 4.59E-52 | -1.69E-46 |
| MS.gene052863 | MS.gene069760 | 0.811224 | 7.79E-51 | -1.69E-46 |
| MS.gene052896 | MS.gene069760 | 0.804022 | 2.64E-49 | -1.69E-46 |
| MS.gene053079 | MS.gene069760 | 0.818914 | 1.53E-52 | -1.69E-46 |
| MS.gene053221 | MS.gene069760 | 0.804336 | 2.27E-49 | -1.69E-46 |
| MS.gene053226 | MS.gene069760 | 0.815506 | 8.93E-52 | -1.69E-46 |
| MS.gene053565 | MS.gene069760 | 0.803123 | 4.05E-49 | -1.69E-46 |
| MS.gene053998 | MS.gene069760 | 0.803157 | 3.99E-49 | -1.69E-46 |
| MS.gene05415 | MS.gene069760 | 0.850396 | 1.74E-60 | -1.69E-46 |
| MS.gene054467 | MS.gene069760 | 0.810376 | 1.19E-50 | -1.69E-46 |
| MS.gene054559 | MS.gene069760 | 0.80081 | 1.21E-48 | -1.69E-46 |
| MS.gene055227 | MS.gene069760 | 0.808235 | 3.42E-50 | -1.69E-46 |
| MS.gene055466 | MS.gene069760 | 0.82214 | 2.78E-53 | -1.69E-46 |
| MS.gene055778 | MS.gene069760 | 0.816073 | 6.67E-52 | -1.69E-46 |
| MS.gene055818 | MS.gene069760 | 0.841923 | 3.54E-58 | -1.69E-46 |
| MS.gene056050 | MS.gene069760 | 0.807802 | 4.23E-50 | -1.69E-46 |
| MS.gene056162 | MS.gene069760 | 0.814736 | 1.32E-51 | -1.69E-46 |
| MS.gene056173 | MS.gene069760 | 0.836779 | 7.66E-57 | -1.69E-46 |
| MS.gene056174 | MS.gene069760 | 0.823966 | 1.04E-53 | -1.69E-46 |
| MS.gene056506 | MS.gene069760 | 0.800044 | 1.73E-48 | -1.69E-46 |
| MS.gene057026 | MS.gene069760 | 0.816718 | 4.79E-52 | -1.69E-46 |
| MS.gene057060 | MS.gene069760 | 0.801541 | 8.58E-49 | -1.69E-46 |
| MS.gene057598 | MS.gene069760 | 0.82883 | 7.23E-55 | -1.69E-46 |
| MS.gene057869 | MS.gene069760 | 0.817782 | 2.76E-52 | -1.69E-46 |
| MS.gene057915 | MS.gene069760 | 0.8224 | 2.42E-53 | -1.69E-46 |
| MS.gene058009 | MS.gene069760 | 0.802086 | 6.63E-49 | -1.69E-46 |
| MS.gene058010 | MS.gene069760 | 0.80643 | 8.26E-50 | -1.69E-46 |
| MS.gene058625 | MS.gene069760 | 0.819353 | 1.21E-52 | -1.69E-46 |
| MS.gene058636 | MS.gene069760 | 0.855701 | 5.29E-62 | -1.69E-46 |
| MS.gene058829 | MS.gene069760 | 0.822797 | 1.95E-53 | -1.69E-46 |
| MS.gene058979 | MS.gene069760 | 0.854836 | 9.44E-62 | -1.69E-46 |
| MS.gene059570 | MS.gene069760 | 0.811016 | 8.64E-51 | -1.69E-46 |
| MS.gene059625 | MS.gene069760 | 0.804163 | 2.46E-49 | -1.69E-46 |
| MS.gene060312 | MS.gene069760 | 0.800309 | 1.53E-48 | -1.69E-46 |
| MS.gene06052 | MS.gene069760 | 0.805715 | 1.17E-49 | -1.69E-46 |
| MS.gene060572 | MS.gene069760 | 0.810565 | 1.08E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene76728 | MS.gene069760 | PPI |
| MS.gene77045 | MS.gene069760 | PPI |
| MS.gene069760 | MS.gene42075 | PPI |
| MS.gene069760 | MS.gene82237 | PPI |
| MS.gene069760 | MS.gene48819 | PPI |
| MS.gene87743 | MS.gene069760 | PPI |
| MS.gene87064 | MS.gene069760 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene069760.t1 | MTR_4g074860 | 96.146 | 960 | 31 | 3 | 1 | 958 | 1 | 956 | 0.0 | 1890 |
| MS.gene069760.t1 | MTR_4g074860 | 94.368 | 870 | 47 | 2 | 1 | 870 | 1 | 868 | 0.0 | 1597 |
| MS.gene069760.t1 | MTR_4g079390 | 81.042 | 960 | 157 | 9 | 1 | 958 | 1 | 937 | 0.0 | 1519 |
| MS.gene069760.t1 | MTR_4g074860 | 94.960 | 754 | 36 | 2 | 1 | 754 | 1 | 752 | 0.0 | 1381 |
| MS.gene069760.t1 | MTR_4g074690 | 84.104 | 346 | 41 | 1 | 1 | 346 | 1 | 332 | 0.0 | 580 |
| MS.gene069760.t1 | MTR_4g074700 | 68.317 | 101 | 11 | 2 | 278 | 357 | 1 | 101 | 5.63e-33 | 123 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene069760.t1 | AT1G17680 | 43.448 | 870 | 422 | 13 | 96 | 957 | 88 | 895 | 0.0 | 641 |
| MS.gene069760.t1 | AT1G17680 | 43.448 | 870 | 422 | 13 | 96 | 957 | 88 | 895 | 0.0 | 641 |
| MS.gene069760.t1 | AT1G17680 | 43.448 | 870 | 422 | 13 | 96 | 957 | 88 | 895 | 0.0 | 641 |
Find 198 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGTGGTAATCTTTAAATTTC+TGG | 0.073604 | 4.3:+32722689 | None:intergenic |
| AGCTTTAACTTTCAAATTTA+AGG | 0.080716 | 4.3:+32716711 | None:intergenic |
| GTTGAGGAATTTATAAATTT+TGG | 0.115527 | 4.3:-32721880 | MS.gene069760:CDS |
| CCAAAAGTGATCTGCTTAAA+AGG | 0.134984 | 4.3:-32711597 | MS.gene069760:CDS |
| ATCATCTTCCCTTGCCTTCT+TGG | 0.171561 | 4.3:+32721927 | None:intergenic |
| CATCATCTTGTAGTGTTTCT+AGG | 0.181965 | 4.3:+32714224 | None:intergenic |
| CTCGGTATTCCATGGATTTC+TGG | 0.186432 | 4.3:+32722668 | None:intergenic |
| TGAGAAGGTGATTGCTATTA+AGG | 0.193370 | 4.3:-32705026 | MS.gene069760:CDS |
| TTCCAAAGCGTTGGATCTTT+TGG | 0.213096 | 4.3:+32719952 | None:intergenic |
| CGCCTTTATTTCCATCAATA+TGG | 0.230843 | 4.3:+32716789 | None:intergenic |
| ACATCAACCCACCATCTATT+TGG | 0.232616 | 4.3:+32714011 | None:intergenic |
| AGCATTCCTCTACAATAATT+TGG | 0.233608 | 4.3:-32708141 | MS.gene069760:CDS |
| CGAGGTCGCAGACTCATTTA+TGG | 0.263136 | 4.3:-32715945 | MS.gene069760:CDS |
| TGCAAATGGCCGTCATAAAA+TGG | 0.270751 | 4.3:-32721232 | MS.gene069760:intron |
| TGTGTACATCATACCTTTCT+TGG | 0.273055 | 4.3:+32721844 | None:intergenic |
| CGAAATACACTATCTGTTTC+CGG | 0.273678 | 4.3:+32711556 | None:intergenic |
| TGCTTTCGAAATACAATAAC+TGG | 0.275722 | 4.3:+32717472 | None:intergenic |
| TCAAATATTACCTTTCGTTT+AGG | 0.300709 | 4.3:+32713882 | None:intergenic |
| AAGATTAACCAATGGATTCT+TGG | 0.301139 | 4.3:+32708332 | None:intergenic |
| TGATACGAGTCAGGTAAATT+TGG | 0.321774 | 4.3:+32720054 | None:intergenic |
| CTTTCCCCTCCTCAACTAGA+AGG | 0.325341 | 4.3:+32714176 | None:intergenic |
| CCATGTTCATCTTGGAAACT+TGG | 0.329180 | 4.3:-32716680 | MS.gene069760:CDS |
| TCAAAACCTTGTTTAGGATC+TGG | 0.329355 | 4.3:+32708727 | None:intergenic |
| CACAAGGGAGATTCTGTGTT+TGG | 0.332550 | 4.3:+32709230 | None:intergenic |
| ACACAATCAAAACCTTGTTT+AGG | 0.335593 | 4.3:+32708721 | None:intergenic |
| TGGAGGAGACAGCAAGGATA+TGG | 0.337744 | 4.3:+32714144 | None:intergenic |
| ACATGCTTGCTTGCATTCTC+TGG | 0.339129 | 4.3:+32715980 | None:intergenic |
| GGACTTGTCCATGGTGCAAT+TGG | 0.341743 | 4.3:-32720024 | MS.gene069760:CDS |
| GATGATCTTCCTCCTCCTTC+CGG | 0.344487 | 4.3:+32722926 | None:intergenic |
| TAGCATCCTTGCAAATGTAT+AGG | 0.352395 | 4.3:-32709078 | MS.gene069760:CDS |
| AAAGATTATTGTTCCGTTTG+AGG | 0.352442 | 4.3:-32704848 | None:intergenic |
| GACTTGTCCATGGTGCAATT+GGG | 0.352525 | 4.3:-32720023 | MS.gene069760:CDS |
| GCTTTAACTTTCAAATTTAA+GGG | 0.357085 | 4.3:+32716712 | None:intergenic |
| CAAAACCTTGTTTAGGATCT+GGG | 0.361830 | 4.3:+32708728 | None:intergenic |
| GGCCTTGATCAACTTGGCGC+TGG | 0.372728 | 4.3:-32708207 | MS.gene069760:CDS |
| GTTCAACTTGACCACACTTT+TGG | 0.373143 | 4.3:+32716890 | None:intergenic |
| AATGAGAAGCTTCGATCTCT+TGG | 0.381601 | 4.3:-32708992 | MS.gene069760:CDS |
| GCAGACTCATTTATGGGTCT+TGG | 0.384921 | 4.3:-32715938 | MS.gene069760:CDS |
| AGATTAACCAATGGATTCTT+GGG | 0.387948 | 4.3:+32708333 | None:intergenic |
| GACTCCTAAGACTACTATCT+TGG | 0.389070 | 4.3:+32717435 | None:intergenic |
| ATAAATTCCTCAACCTCAGC+TGG | 0.392533 | 4.3:+32721889 | None:intergenic |
| TGCCATATTGATGGAAATAA+AGG | 0.393502 | 4.3:-32716791 | MS.gene069760:CDS |
| AGCATCCTTGCAAATGTATA+GGG | 0.393989 | 4.3:-32709077 | MS.gene069760:CDS |
| TGGGGATCACGAAAATGAAA+TGG | 0.398538 | 4.3:-32720004 | MS.gene069760:CDS |
| GCAGAGCAAACCGTTGCTAC+AGG | 0.402047 | 4.3:-32711644 | MS.gene069760:intron |
| TATAAAGATTCCTGCGAGGC+TGG | 0.402386 | 4.3:+32705106 | None:intergenic |
| AAAGCCGAGGCAGTGGCCTC+TGG | 0.403885 | 4.3:-32709397 | MS.gene069760:CDS |
| TCTACTTGGTGCCATATTGA+TGG | 0.405536 | 4.3:-32716800 | MS.gene069760:CDS |
| ACACTTGCATTTACTCCATC+TGG | 0.405571 | 4.3:+32716829 | None:intergenic |
| TTCGTTCGTAACAATGATTC+CGG | 0.406060 | 4.3:-32722724 | MS.gene069760:CDS |
| TCGCTGTCTTCTACCGCCCT+TGG | 0.407223 | 4.3:+32722904 | None:intergenic |
| TGCAGAGAACAAAATGATAT+TGG | 0.410117 | 4.3:-32717500 | MS.gene069760:intron |
| CTGTCTCCTCCAAAGGAATC+TGG | 0.412972 | 4.3:-32714133 | MS.gene069760:intron |
| TACTAACATCAATGATTAGC+TGG | 0.418868 | 4.3:+32709180 | None:intergenic |
| GCAAAAGTTTATAAGCTTCA+AGG | 0.423524 | 4.3:+32708355 | None:intergenic |
| TCCTTGCCGCGTCTTGATGA+TGG | 0.424711 | 4.3:+32708382 | None:intergenic |
| TTCCCTTGCCTTCTTGGAAG+AGG | 0.424851 | 4.3:+32721933 | None:intergenic |
| TGACTCGGATGATGAGCTTC+AGG | 0.426120 | 4.3:-32709353 | MS.gene069760:intron |
| TCATCTTGGAAACTTGGAAA+TGG | 0.426366 | 4.3:-32716674 | MS.gene069760:CDS |
| CGAAAAGATATCACAGATGT+TGG | 0.427095 | 4.3:-32721274 | MS.gene069760:CDS |
| ACTCCTAAGACTACTATCTT+GGG | 0.427608 | 4.3:+32717436 | None:intergenic |
| AGGCAATTGAGAAGGAGAAA+AGG | 0.427635 | 4.3:-32709420 | MS.gene069760:CDS |
| CTCCAAAAGATCCAACGCTT+TGG | 0.429606 | 4.3:-32719954 | MS.gene069760:CDS |
| TATCAATCTCTCTCTGAAAT+CGG | 0.431671 | 4.3:-32709041 | MS.gene069760:CDS |
| TGCTAGATGTTATCAAGCGT+TGG | 0.439832 | 4.3:-32715335 | MS.gene069760:CDS |
| GCCTTGATCAACTTGGCGCT+GGG | 0.442089 | 4.3:-32708206 | MS.gene069760:CDS |
| TAGTTACCGGTGAGATTGTA+GGG | 0.443984 | 4.3:+32722618 | None:intergenic |
| TTACCAGTACCAGATTCCTT+TGG | 0.444295 | 4.3:+32714124 | None:intergenic |
| GTTATCAAGCGTTGGGAGAA+AGG | 0.444433 | 4.3:-32715327 | MS.gene069760:CDS |
| TTAAATTTGAAAGTTAAAGC+TGG | 0.445910 | 4.3:-32716709 | MS.gene069760:CDS |
| AAGGTCGCAGTAACCAGGTT+TGG | 0.447194 | 4.3:+32704946 | None:intergenic |
| TTAGTTACCGGTGAGATTGT+AGG | 0.449175 | 4.3:+32722617 | None:intergenic |
| GGAATCTGCCATGTTCATCT+TGG | 0.450294 | 4.3:-32716688 | MS.gene069760:CDS |
| TTCAAAGATTCACGTACTAA+AGG | 0.452862 | 4.3:+32713915 | None:intergenic |
| GCTAGATGTTATCAAGCGTT+GGG | 0.456876 | 4.3:-32715334 | MS.gene069760:CDS |
| GTAGAATGGAAGAGATTAAC+CGG | 0.457404 | 4.3:-32722945 | None:intergenic |
| TCAAAGATTCACGTACTAAA+GGG | 0.458130 | 4.3:+32713916 | None:intergenic |
| GGTAGAGAAACTTGCTGCTC+CGG | 0.460694 | 4.3:-32711575 | MS.gene069760:CDS |
| TGTTGAAGCACGCATAACTT+TGG | 0.467038 | 4.3:-32714203 | MS.gene069760:CDS |
| GGGGATCACGAAAATGAAAT+GGG | 0.467202 | 4.3:-32720003 | MS.gene069760:CDS |
| CCAGTACCAGATTCCTTTGG+AGG | 0.471523 | 4.3:+32714127 | None:intergenic |
| ATTTGTCATGTCTTGTATCT+CGG | 0.471744 | 4.3:+32708484 | None:intergenic |
| CAAAAGTGATCTGCTTAAAA+GGG | 0.472363 | 4.3:-32711596 | MS.gene069760:CDS |
| GAGGTCGCAGACTCATTTAT+GGG | 0.475412 | 4.3:-32715944 | MS.gene069760:CDS |
| AAGGATCATGTAACCTCAAA+CGG | 0.483626 | 4.3:+32704835 | None:intergenic |
| AAGCATCAGTGTGTTGTACA+AGG | 0.483840 | 4.3:-32708167 | MS.gene069760:CDS |
| CATAAATGAGTCTGCGACCT+CGG | 0.485715 | 4.3:+32715946 | None:intergenic |
| CCAAGGGTGTGATACGAGTC+AGG | 0.486679 | 4.3:+32720045 | None:intergenic |
| ACCATACCCTGTGTCTTCAT+TGG | 0.487379 | 4.3:+32722876 | None:intergenic |
| GAAGATGATCAATTCATCTT+CGG | 0.487604 | 4.3:-32722769 | MS.gene069760:CDS |
| GGCTTCCCTTCTAGTTGAGG+AGG | 0.488281 | 4.3:-32714182 | MS.gene069760:CDS |
| GCCTACGTTCACTATGCAAA+TGG | 0.490448 | 4.3:-32721246 | MS.gene069760:CDS |
| TGGAAACTTGGAAATGGCTC+AGG | 0.490959 | 4.3:-32716668 | MS.gene069760:intron |
| AATTGATTGCCCAGCCTCGC+AGG | 0.491180 | 4.3:-32705116 | MS.gene069760:CDS |
| TTGTTACGAACGAAGTCTAA+AGG | 0.493877 | 4.3:+32722733 | None:intergenic |
| CCTGACTCGTATCACACCCT+TGG | 0.497427 | 4.3:-32720045 | MS.gene069760:CDS |
| GAAAAGGAAAGCCGAGGCAG+TGG | 0.498777 | 4.3:-32709404 | MS.gene069760:CDS |
| TTTGGCTTCCCTTCTAGTTG+AGG | 0.498866 | 4.3:-32714185 | MS.gene069760:CDS |
| CCATTGGTTAATCTTTGTGT+TGG | 0.507574 | 4.3:-32708324 | MS.gene069760:intron |
| GCTTCCCTTCTAGTTGAGGA+GGG | 0.511143 | 4.3:-32714181 | MS.gene069760:CDS |
| CTGCGAAGGTCGCAGTAACC+AGG | 0.512482 | 4.3:+32704941 | None:intergenic |
| TGTAATCTTCACAAAGATGA+AGG | 0.514832 | 4.3:-32709209 | MS.gene069760:CDS |
| TGTAACATATTTCAGATCAG+AGG | 0.517237 | 4.3:-32713969 | MS.gene069760:CDS |
| CACACCCTTGGACTTGTCCA+TGG | 0.519632 | 4.3:-32720033 | MS.gene069760:CDS |
| ATTCTGAAAAGCCAAATAGA+TGG | 0.519704 | 4.3:-32714022 | MS.gene069760:CDS |
| AGCTTGGAATTGCTACTACA+AGG | 0.529259 | 4.3:-32708662 | MS.gene069760:CDS |
| GAAAAGATATCACAGATGTT+GGG | 0.529261 | 4.3:-32721273 | MS.gene069760:CDS |
| GGTAAACCCAGCTGAGGTTG+AGG | 0.531045 | 4.3:-32721896 | MS.gene069760:CDS |
| CCAAGTTTCCAAGATGAACA+TGG | 0.532871 | 4.3:+32716680 | None:intergenic |
| ATAAAGATTCCTGCGAGGCT+GGG | 0.533831 | 4.3:+32705107 | None:intergenic |
| TTTGATTTGCCCTGTAGCAA+CGG | 0.533939 | 4.3:+32711634 | None:intergenic |
| TGCACTAAAAGCAGCAGCTA+AGG | 0.541266 | 4.3:-32717321 | MS.gene069760:intron |
| ACCCAGCGCCAAGTTGATCA+AGG | 0.542488 | 4.3:+32708205 | None:intergenic |
| GGAGATCTGTAAGAACAGCC+AGG | 0.543215 | 4.3:-32708120 | MS.gene069760:intron |
| TAAACTGATGCGCAGAAATG+AGG | 0.544020 | 4.3:+32708415 | None:intergenic |
| ATCGAGAGCTCGGTATTCCA+TGG | 0.544191 | 4.3:+32722660 | None:intergenic |
| GAAACAGATAGTGTATTTCG+AGG | 0.546110 | 4.3:-32711553 | MS.gene069760:CDS |
| ACTAACATCAATGATTAGCT+GGG | 0.546575 | 4.3:+32709181 | None:intergenic |
| AGGAACGGCCTTGATCAACT+TGG | 0.548967 | 4.3:-32708213 | MS.gene069760:CDS |
| CAGTGGCCTCTGGAATTGAC+TGG | 0.549957 | 4.3:-32709387 | MS.gene069760:CDS |
| CTTCCCTTCTAGTTGAGGAG+GGG | 0.550556 | 4.3:-32714180 | MS.gene069760:CDS |
| GCCATCATCAAGACGCGGCA+AGG | 0.554004 | 4.3:-32708383 | MS.gene069760:CDS |
| TTTGCATGAAGTTGTCAGGC+TGG | 0.554814 | 4.3:-32720079 | MS.gene069760:CDS |
| GCCAATGAAGACACAGGGTA+TGG | 0.556221 | 4.3:-32722877 | MS.gene069760:CDS |
| ATGCACAGAGTGTTGCAGCT+TGG | 0.557784 | 4.3:-32708678 | MS.gene069760:CDS |
| ATAGAACAATCTCAAGTGGT+TGG | 0.557899 | 4.3:-32716745 | MS.gene069760:CDS |
| TTGCACCATGGACAAGTCCA+AGG | 0.558983 | 4.3:+32720028 | None:intergenic |
| TAAATTCCTCAACCTCAGCT+GGG | 0.559401 | 4.3:+32721890 | None:intergenic |
| CTGAAAAGCCAAATAGATGG+TGG | 0.560031 | 4.3:-32714019 | MS.gene069760:CDS |
| ATCCTTGCTGTCTCCTCCAA+AGG | 0.561469 | 4.3:-32714140 | MS.gene069760:CDS |
| CACTCACCGATCAGCTGATG+TGG | 0.561902 | 4.3:+32711516 | None:intergenic |
| AGACCTCTTCCAAGAAGGCA+AGG | 0.563682 | 4.3:-32721936 | MS.gene069760:CDS |
| AGAGATTAACCGGAAGGAGG+AGG | 0.563912 | 4.3:-32722935 | MS.gene069760:CDS |
| ACTTGTCCATGGTGCAATTG+GGG | 0.566458 | 4.3:-32720022 | MS.gene069760:CDS |
| GTAACATATTTCAGATCAGA+GGG | 0.567514 | 4.3:-32713968 | MS.gene069760:CDS |
| CAGAGCAAACCGTTGCTACA+GGG | 0.574847 | 4.3:-32711643 | MS.gene069760:CDS |
| TTTCCCCTCCTCAACTAGAA+GGG | 0.577242 | 4.3:+32714177 | None:intergenic |
| AGATCTCCAAATTATTGTAG+AGG | 0.578673 | 4.3:+32708135 | None:intergenic |
| TGCTTCCCTATACATTTGCA+AGG | 0.578680 | 4.3:+32709072 | None:intergenic |
| CTCCTAAGACTACTATCTTG+GGG | 0.582097 | 4.3:+32717437 | None:intergenic |
| GATCAATTCATCTTCGGTGA+CGG | 0.585305 | 4.3:-32722763 | MS.gene069760:CDS |
| TTTGGAAGACGCTTTATGTG+TGG | 0.586815 | 4.3:-32719936 | MS.gene069760:CDS |
| GCTTTCGGTTATCGAGAGCT+CGG | 0.586940 | 4.3:+32722650 | None:intergenic |
| GTCAATGAAAATTCCAAACC+TGG | 0.588858 | 4.3:-32704959 | MS.gene069760:CDS |
| TAAAGCGTCTTCCAAAGCGT+TGG | 0.591231 | 4.3:+32719943 | None:intergenic |
| AGGAGGAGGAAGATCATCCA+AGG | 0.591354 | 4.3:-32722921 | MS.gene069760:CDS |
| AGAAGAAGAAGAAAACGATA+CGG | 0.591701 | 4.3:-32722797 | MS.gene069760:CDS |
| TGTAAGCTGCCTCTCTGCGA+AGG | 0.596269 | 4.3:+32704927 | None:intergenic |
| GGCAGCAATATATTATGAGA+AGG | 0.596270 | 4.3:-32705041 | MS.gene069760:CDS |
| AACTACCCCTACAATCTCAC+CGG | 0.596811 | 4.3:-32722624 | MS.gene069760:intron |
| AATTCCAGAGGCCACTGCCT+CGG | 0.597422 | 4.3:+32709393 | None:intergenic |
| TGAAGAGACCTCTTCCAAGA+AGG | 0.599472 | 4.3:-32721941 | MS.gene069760:CDS |
| AGAGGGCAAGAGACCAAGAA+AGG | 0.599590 | 4.3:-32721857 | MS.gene069760:intron |
| AGATTACCACCAGAAATCCA+TGG | 0.600997 | 4.3:-32722677 | MS.gene069760:CDS |
| CGTGATCCCCAATTGCACCA+TGG | 0.601775 | 4.3:+32720016 | None:intergenic |
| CTGGCGAAGTGATGATGACT+CGG | 0.603010 | 4.3:-32709368 | MS.gene069760:CDS |
| TCATGTTGGTCTTGTAACAC+TGG | 0.603510 | 4.3:-32705062 | MS.gene069760:CDS |
| TGTTGCAACTCCTAAACGAA+AGG | 0.605260 | 4.3:-32713892 | MS.gene069760:intron |
| ATGTAGCCACATCAGCTGAT+CGG | 0.606044 | 4.3:-32711522 | MS.gene069760:intron |
| AATGGAAGAGATTAACCGGA+AGG | 0.607230 | 4.3:-32722941 | MS.gene069760:CDS |
| TATCTGAAGAATAAACCAGA+TGG | 0.610837 | 4.3:-32716844 | MS.gene069760:CDS |
| TGAGGAAAAGGCAATTGAGA+AGG | 0.611096 | 4.3:-32709428 | MS.gene069760:CDS |
| TTCCTTTGGAGGAGACAGCA+AGG | 0.611322 | 4.3:+32714138 | None:intergenic |
| ATCTTTGTGAAGATTACACA+AGG | 0.612893 | 4.3:+32709214 | None:intergenic |
| TGCGCAGAAATGAGGATAGG+AGG | 0.613954 | 4.3:+32708423 | None:intergenic |
| GCAAGTGTAGTTGATCTACT+TGG | 0.615929 | 4.3:-32716814 | MS.gene069760:CDS |
| GTACATAGAACAATCTCAAG+TGG | 0.616481 | 4.3:-32716749 | MS.gene069760:CDS |
| AAAACCTTGTTTAGGATCTG+GGG | 0.616944 | 4.3:+32708729 | None:intergenic |
| TGAAAAGCCAAATAGATGGT+GGG | 0.616970 | 4.3:-32714018 | MS.gene069760:CDS |
| GACAATGCCAATGAAGACAC+AGG | 0.618838 | 4.3:-32722883 | MS.gene069760:CDS |
| TGATGCGCAGAAATGAGGAT+AGG | 0.622178 | 4.3:+32708420 | None:intergenic |
| GTGTTACAAGACCAACATGA+TGG | 0.623553 | 4.3:+32705065 | None:intergenic |
| GACCTCTTCCAAGAAGGCAA+GGG | 0.625361 | 4.3:-32721935 | MS.gene069760:CDS |
| GGTATTCCATGGATTTCTGG+TGG | 0.631841 | 4.3:+32722671 | None:intergenic |
| TGCACCATGGACAAGTCCAA+GGG | 0.636862 | 4.3:+32720029 | None:intergenic |
| TGAAGACACAGGGTATGGTA+CGG | 0.639174 | 4.3:-32722872 | MS.gene069760:CDS |
| GGAAGAGATTAACCGGAAGG+AGG | 0.639834 | 4.3:-32722938 | MS.gene069760:CDS |
| GCTCGTGCATACCATCATGT+TGG | 0.643090 | 4.3:-32705076 | MS.gene069760:CDS |
| GCTACTACAAGGTCATCTCA+AGG | 0.650177 | 4.3:-32708651 | MS.gene069760:intron |
| AGAAGAAGAAAACGATACGG+TGG | 0.651921 | 4.3:-32722794 | MS.gene069760:CDS |
| CCAACACAAAGATTAACCAA+TGG | 0.654625 | 4.3:+32708324 | None:intergenic |
| GGGTATGGTACGGAAGAGAA+CGG | 0.656026 | 4.3:-32722862 | MS.gene069760:CDS |
| TTTCTGGTACAAATTAACAC+CGG | 0.660458 | 4.3:+32722705 | None:intergenic |
| TCCTAAGACTACTATCTTGG+GGG | 0.670783 | 4.3:+32717438 | None:intergenic |
| CTAACATCAATGATTAGCTG+GGG | 0.678208 | 4.3:+32709182 | None:intergenic |
| GAAGGAGAAAAGGAAAGCCG+AGG | 0.681747 | 4.3:-32709410 | MS.gene069760:CDS |
| ACTTCGCCAGTCAATTCCAG+AGG | 0.684911 | 4.3:+32709381 | None:intergenic |
| AGTTACCGGTGAGATTGTAG+GGG | 0.692832 | 4.3:+32722619 | None:intergenic |
| GGAGGAAGATCATCCAAGGG+CGG | 0.693061 | 4.3:-32722917 | MS.gene069760:CDS |
| AGCACCCCAGATCCTAAACA+AGG | 0.697620 | 4.3:-32708733 | MS.gene069760:CDS |
| TTACTGCGACCTTCGCAGAG+AGG | 0.702009 | 4.3:-32704936 | MS.gene069760:CDS |
| GGAGGAGGAAGATCATCCAA+GGG | 0.703652 | 4.3:-32722920 | MS.gene069760:CDS |
| ACAATGCCAATGAAGACACA+GGG | 0.704693 | 4.3:-32722882 | MS.gene069760:CDS |
| TCTTTGTGAAGATTACACAA+GGG | 0.712083 | 4.3:+32709215 | None:intergenic |
| ATGTAGCCATCATCAAGACG+CGG | 0.722082 | 4.3:-32708388 | MS.gene069760:CDS |
| GCCATTTGCATAGTGAACGT+AGG | 0.728917 | 4.3:+32721245 | None:intergenic |
| GTTATATAAAGATTCCTGCG+AGG | 0.729306 | 4.3:+32705102 | None:intergenic |
| GCATGTTGAGTCGATCACCG+AGG | 0.779874 | 4.3:-32715963 | MS.gene069760:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.3 | gene | 32704850 | 32722962 | 32704850 | ID=MS.gene069760 |
| chr4.3 | mRNA | 32704850 | 32722962 | 32704850 | ID=MS.gene069760.t1;Parent=MS.gene069760 |
| chr4.3 | exon | 32722625 | 32722962 | 32722625 | ID=MS.gene069760.t1.exon1;Parent=MS.gene069760.t1 |
| chr4.3 | CDS | 32722625 | 32722962 | 32722625 | ID=cds.MS.gene069760.t1;Parent=MS.gene069760.t1 |
| chr4.3 | exon | 32721858 | 32721963 | 32721858 | ID=MS.gene069760.t1.exon2;Parent=MS.gene069760.t1 |
| chr4.3 | CDS | 32721858 | 32721963 | 32721858 | ID=cds.MS.gene069760.t1;Parent=MS.gene069760.t1 |
| chr4.3 | exon | 32721233 | 32721346 | 32721233 | ID=MS.gene069760.t1.exon3;Parent=MS.gene069760.t1 |
| chr4.3 | CDS | 32721233 | 32721346 | 32721233 | ID=cds.MS.gene069760.t1;Parent=MS.gene069760.t1 |
| chr4.3 | exon | 32719931 | 32720112 | 32719931 | ID=MS.gene069760.t1.exon4;Parent=MS.gene069760.t1 |
| chr4.3 | CDS | 32719931 | 32720112 | 32719931 | ID=cds.MS.gene069760.t1;Parent=MS.gene069760.t1 |
| chr4.3 | exon | 32717322 | 32717517 | 32717322 | ID=MS.gene069760.t1.exon5;Parent=MS.gene069760.t1 |
| chr4.3 | CDS | 32717322 | 32717517 | 32717322 | ID=cds.MS.gene069760.t1;Parent=MS.gene069760.t1 |
| chr4.3 | exon | 32716669 | 32716917 | 32716669 | ID=MS.gene069760.t1.exon6;Parent=MS.gene069760.t1 |
| chr4.3 | CDS | 32716669 | 32716917 | 32716669 | ID=cds.MS.gene069760.t1;Parent=MS.gene069760.t1 |
| chr4.3 | exon | 32715877 | 32716023 | 32715877 | ID=MS.gene069760.t1.exon7;Parent=MS.gene069760.t1 |
| chr4.3 | CDS | 32715877 | 32716023 | 32715877 | ID=cds.MS.gene069760.t1;Parent=MS.gene069760.t1 |
| chr4.3 | exon | 32715299 | 32715377 | 32715299 | ID=MS.gene069760.t1.exon8;Parent=MS.gene069760.t1 |
| chr4.3 | CDS | 32715299 | 32715377 | 32715299 | ID=cds.MS.gene069760.t1;Parent=MS.gene069760.t1 |
| chr4.3 | exon | 32714134 | 32714247 | 32714134 | ID=MS.gene069760.t1.exon9;Parent=MS.gene069760.t1 |
| chr4.3 | CDS | 32714134 | 32714247 | 32714134 | ID=cds.MS.gene069760.t1;Parent=MS.gene069760.t1 |
| chr4.3 | exon | 32713893 | 32714059 | 32713893 | ID=MS.gene069760.t1.exon10;Parent=MS.gene069760.t1 |
| chr4.3 | CDS | 32713893 | 32714059 | 32713893 | ID=cds.MS.gene069760.t1;Parent=MS.gene069760.t1 |
| chr4.3 | exon | 32711523 | 32711662 | 32711523 | ID=MS.gene069760.t1.exon11;Parent=MS.gene069760.t1 |
| chr4.3 | CDS | 32711523 | 32711662 | 32711523 | ID=cds.MS.gene069760.t1;Parent=MS.gene069760.t1 |
| chr4.3 | exon | 32709354 | 32709480 | 32709354 | ID=MS.gene069760.t1.exon12;Parent=MS.gene069760.t1 |
| chr4.3 | CDS | 32709354 | 32709480 | 32709354 | ID=cds.MS.gene069760.t1;Parent=MS.gene069760.t1 |
| chr4.3 | exon | 32709187 | 32709255 | 32709187 | ID=MS.gene069760.t1.exon13;Parent=MS.gene069760.t1 |
| chr4.3 | CDS | 32709187 | 32709255 | 32709187 | ID=cds.MS.gene069760.t1;Parent=MS.gene069760.t1 |
| chr4.3 | exon | 32708987 | 32709113 | 32708987 | ID=MS.gene069760.t1.exon14;Parent=MS.gene069760.t1 |
| chr4.3 | CDS | 32708987 | 32709113 | 32708987 | ID=cds.MS.gene069760.t1;Parent=MS.gene069760.t1 |
| chr4.3 | exon | 32708652 | 32708766 | 32708652 | ID=MS.gene069760.t1.exon15;Parent=MS.gene069760.t1 |
| chr4.3 | CDS | 32708652 | 32708766 | 32708652 | ID=cds.MS.gene069760.t1;Parent=MS.gene069760.t1 |
| chr4.3 | exon | 32708325 | 32708515 | 32708325 | ID=MS.gene069760.t1.exon16;Parent=MS.gene069760.t1 |
| chr4.3 | CDS | 32708325 | 32708515 | 32708325 | ID=cds.MS.gene069760.t1;Parent=MS.gene069760.t1 |
| chr4.3 | exon | 32708121 | 32708233 | 32708121 | ID=MS.gene069760.t1.exon17;Parent=MS.gene069760.t1 |
| chr4.3 | CDS | 32708121 | 32708233 | 32708121 | ID=cds.MS.gene069760.t1;Parent=MS.gene069760.t1 |
| chr4.3 | exon | 32704850 | 32705152 | 32704850 | ID=MS.gene069760.t1.exon18;Parent=MS.gene069760.t1 |
| chr4.3 | CDS | 32704850 | 32705152 | 32704850 | ID=cds.MS.gene069760.t1;Parent=MS.gene069760.t1 |
| Gene Sequence |
| Protein sequence |
