Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene070227.t1 | XP_003594743.2 | 95.5 | 425 | 18 | 1 | 1 | 425 | 1 | 424 | 2.90E-223 | 784.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene070227.t1 | A2Q2W7 | 95.5 | 425 | 18 | 1 | 1 | 425 | 1 | 424 | 2.1e-223 | 784.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049351 | MS.gene070227 | 0.815111 | 1.09E-51 | -1.69E-46 |
| MS.gene049427 | MS.gene070227 | 0.807348 | 5.28E-50 | -1.69E-46 |
| MS.gene049609 | MS.gene070227 | 0.804966 | 1.68E-49 | -1.69E-46 |
| MS.gene050397 | MS.gene070227 | 0.809136 | 2.20E-50 | -1.69E-46 |
| MS.gene050593 | MS.gene070227 | 0.843988 | 9.99E-59 | -1.69E-46 |
| MS.gene050670 | MS.gene070227 | 0.807504 | 4.89E-50 | -1.69E-46 |
| MS.gene050770 | MS.gene070227 | 0.801716 | 7.89E-49 | -1.69E-46 |
| MS.gene050772 | MS.gene070227 | 0.801559 | 8.51E-49 | -1.69E-46 |
| MS.gene050950 | MS.gene070227 | 0.802121 | 6.52E-49 | -1.69E-46 |
| MS.gene051387 | MS.gene070227 | 0.835836 | 1.33E-56 | -1.69E-46 |
| MS.gene051694 | MS.gene070227 | 0.808081 | 3.69E-50 | -1.69E-46 |
| MS.gene052310 | MS.gene070227 | 0.801633 | 8.21E-49 | -1.69E-46 |
| MS.gene052379 | MS.gene070227 | 0.832071 | 1.17E-55 | -1.69E-46 |
| MS.gene052870 | MS.gene070227 | 0.815127 | 1.08E-51 | -1.69E-46 |
| MS.gene052872 | MS.gene070227 | 0.805979 | 1.03E-49 | -1.69E-46 |
| MS.gene053104 | MS.gene070227 | 0.815526 | 8.84E-52 | -1.69E-46 |
| MS.gene053107 | MS.gene070227 | 0.881322 | 2.64E-70 | -1.69E-46 |
| MS.gene053207 | MS.gene070227 | 0.804252 | 2.36E-49 | -1.69E-46 |
| MS.gene053213 | MS.gene070227 | 0.806049 | 9.93E-50 | -1.69E-46 |
| MS.gene053322 | MS.gene070227 | 0.834974 | 2.20E-56 | -1.69E-46 |
| MS.gene054376 | MS.gene070227 | 0.801479 | 8.83E-49 | -1.69E-46 |
| MS.gene054802 | MS.gene070227 | 0.827666 | 1.38E-54 | -1.69E-46 |
| MS.gene054803 | MS.gene070227 | 0.822941 | 1.81E-53 | -1.69E-46 |
| MS.gene054804 | MS.gene070227 | 0.824609 | 7.36E-54 | -1.69E-46 |
| MS.gene05505 | MS.gene070227 | 0.801658 | 8.12E-49 | -1.69E-46 |
| MS.gene055206 | MS.gene070227 | 0.827929 | 1.19E-54 | -1.69E-46 |
| MS.gene055277 | MS.gene070227 | 0.827089 | 1.90E-54 | -1.69E-46 |
| MS.gene055289 | MS.gene070227 | 0.804676 | 1.93E-49 | -1.69E-46 |
| MS.gene055499 | MS.gene070227 | 0.812979 | 3.23E-51 | -1.69E-46 |
| MS.gene055577 | MS.gene070227 | 0.802708 | 4.94E-49 | -1.69E-46 |
| MS.gene055605 | MS.gene070227 | 0.817766 | 2.78E-52 | -1.69E-46 |
| MS.gene05592 | MS.gene070227 | 0.846998 | 1.53E-59 | -1.69E-46 |
| MS.gene055941 | MS.gene070227 | 0.810568 | 1.08E-50 | -1.69E-46 |
| MS.gene056407 | MS.gene070227 | 0.813301 | 2.74E-51 | -1.69E-46 |
| MS.gene056410 | MS.gene070227 | 0.813419 | 2.58E-51 | -1.69E-46 |
| MS.gene056796 | MS.gene070227 | 0.831078 | 2.05E-55 | -1.69E-46 |
| MS.gene057011 | MS.gene070227 | 0.844181 | 8.86E-59 | -1.69E-46 |
| MS.gene057129 | MS.gene070227 | 0.807054 | 6.09E-50 | -1.69E-46 |
| MS.gene057146 | MS.gene070227 | 0.800474 | 1.42E-48 | -1.69E-46 |
| MS.gene057331 | MS.gene070227 | 0.839904 | 1.20E-57 | -1.69E-46 |
| MS.gene057416 | MS.gene070227 | 0.831528 | 1.59E-55 | -1.69E-46 |
| MS.gene057658 | MS.gene070227 | 0.802588 | 5.23E-49 | -1.69E-46 |
| MS.gene058006 | MS.gene070227 | 0.820892 | 5.39E-53 | -1.69E-46 |
| MS.gene058233 | MS.gene070227 | 0.846452 | 2.15E-59 | -1.69E-46 |
| MS.gene058293 | MS.gene070227 | 0.812624 | 3.86E-51 | -1.69E-46 |
| MS.gene058323 | MS.gene070227 | 0.86082 | 1.58E-63 | -1.69E-46 |
| MS.gene05837 | MS.gene070227 | 0.806375 | 8.48E-50 | -1.69E-46 |
| MS.gene058660 | MS.gene070227 | 0.802727 | 4.89E-49 | -1.69E-46 |
| MS.gene059023 | MS.gene070227 | 0.801377 | 9.27E-49 | -1.69E-46 |
| MS.gene05934 | MS.gene070227 | 0.827021 | 1.97E-54 | -1.69E-46 |
| MS.gene059536 | MS.gene070227 | 0.803583 | 3.25E-49 | -1.69E-46 |
| MS.gene059676 | MS.gene070227 | 0.810488 | 1.12E-50 | -1.69E-46 |
| MS.gene059960 | MS.gene070227 | 0.840974 | 6.29E-58 | -1.69E-46 |
| MS.gene060804 | MS.gene070227 | 0.830002 | 3.75E-55 | -1.69E-46 |
| MS.gene06092 | MS.gene070227 | 0.849443 | 3.22E-60 | -1.69E-46 |
| MS.gene061150 | MS.gene070227 | 0.810091 | 1.37E-50 | -1.69E-46 |
| MS.gene061200 | MS.gene070227 | 0.808158 | 3.55E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene070227.t1 | MTR_2g034140 | 96.059 | 406 | 15 | 1 | 20 | 425 | 6 | 410 | 0.0 | 808 |
| MS.gene070227.t1 | MTR_2g034140 | 95.529 | 425 | 18 | 1 | 1 | 425 | 1 | 424 | 0.0 | 788 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 83 sgRNAs with CRISPR-Local
Find 170 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCATCCTGAGCATCTCTTAT+TGG | 0.255116 | 2.2:+54727963 | MS.gene070227:CDS |
| GCAGGCTTTCTTCAACTTGC+TGG | 0.275625 | 2.2:+54727483 | MS.gene070227:intron |
| AATATTACCTTGCACTTGTA+TGG | 0.276099 | 2.2:-54726444 | None:intergenic |
| AGTCTCTCCAGAGAGGTAAT+TGG | 0.280375 | 2.2:+54725317 | MS.gene070227:CDS |
| AGCATCTCTTATTGGCTCTA+AGG | 0.283609 | 2.2:+54727971 | MS.gene070227:CDS |
| AGGGAAGCTCTTGCTTTGAT+TGG | 0.323169 | 2.2:+54727991 | MS.gene070227:CDS |
| CTTCAGTACTCTTGGTGTTT+CGG | 0.323610 | 2.2:-54726052 | None:intergenic |
| ACATCTTATGCTGCCTTAGA+AGG | 0.333220 | 2.2:+54725610 | MS.gene070227:CDS |
| GAAGAACTATGGCGTGCTTT+AGG | 0.333345 | 2.2:+54726643 | MS.gene070227:CDS |
| AAGTTGAAGTTTCTAAGATT+TGG | 0.338252 | 2.2:-54726894 | None:intergenic |
| ATCTTAGAAACTTCAACTTA+TGG | 0.342098 | 2.2:+54726898 | MS.gene070227:CDS |
| ATTGTTGAATCTCCAACATT+AGG | 0.343139 | 2.2:-54726837 | None:intergenic |
| ATAGATTATTGACATTTAAC+AGG | 0.344744 | 2.2:-54728015 | None:intergenic |
| AGTTTGGTTTACACTCTTGC+TGG | 0.350609 | 2.2:+54725394 | MS.gene070227:CDS |
| TATGCTGCCTTAGAAGGCCT+TGG | 0.350897 | 2.2:+54725616 | MS.gene070227:CDS |
| GTGAAGATCTTTATCATCAT+TGG | 0.352123 | 2.2:-54725652 | None:intergenic |
| CGTCCGATGAGTGGAGATAT+TGG | 0.364584 | 2.2:+54727043 | MS.gene070227:CDS |
| TCATAACCCAAGGCCTTCTA+AGG | 0.373122 | 2.2:-54725623 | None:intergenic |
| AATAGCCTTTGCTGCTCAAT+TGG | 0.377573 | 2.2:+54727087 | MS.gene070227:CDS |
| TGCTAATGCAATCTCATTCC+AGG | 0.384899 | 2.2:+54725999 | MS.gene070227:CDS |
| GGCATACATGTTCAGATTGT+TGG | 0.392739 | 2.2:+54727886 | MS.gene070227:intron |
| GTAAACTGTTTGAAGAACTA+TGG | 0.401548 | 2.2:+54726632 | MS.gene070227:CDS |
| ATGCTGCCTTAGAAGGCCTT+GGG | 0.406090 | 2.2:+54725617 | MS.gene070227:CDS |
| TGAAGCAGCTCCACCATGTT+GGG | 0.410865 | 2.2:-54727932 | None:intergenic |
| TTGTTTGTTTCCAGAATACT+TGG | 0.412856 | 2.2:+54727656 | MS.gene070227:intron |
| GTCCGATGAGTGGAGATATT+GGG | 0.417237 | 2.2:+54727044 | MS.gene070227:CDS |
| GTTAAAACCTTCAGTACTCT+TGG | 0.418097 | 2.2:-54726060 | None:intergenic |
| TAGCATCAACATCATTTCTC+TGG | 0.438762 | 2.2:-54726414 | None:intergenic |
| TATTGGGAGAGGAGCAACTA+AGG | 0.440476 | 2.2:+54727060 | MS.gene070227:CDS |
| CAGGTTAGTTTACCTAATGT+TGG | 0.448264 | 2.2:+54726825 | MS.gene070227:intron |
| GTCTCTCCAGAGAGGTAATT+GGG | 0.449708 | 2.2:+54725318 | MS.gene070227:CDS |
| TTTGCGAAGTAGATTTCTCC+TGG | 0.450649 | 2.2:-54726017 | None:intergenic |
| TGGAATGAGATTGCATTAGC+AGG | 0.453245 | 2.2:-54725997 | None:intergenic |
| GGCTTTCTTCAACTTGCTGG+TGG | 0.463509 | 2.2:+54727486 | MS.gene070227:intron |
| GTGCTTAATTCCAGCAAAAG+TGG | 0.464416 | 2.2:+54725201 | MS.gene070227:intron |
| CCATCACACGCTTTAATTAG+CGG | 0.467340 | 2.2:+54727711 | MS.gene070227:CDS |
| GATCTTCACTTTCGCAAAGC+CGG | 0.473240 | 2.2:+54725666 | MS.gene070227:CDS |
| TTAATTAGCGGCATAGCCTA+TGG | 0.484285 | 2.2:+54727723 | MS.gene070227:CDS |
| AGAGCCAATAAGAGATGCTC+AGG | 0.491628 | 2.2:-54727967 | None:intergenic |
| ACTAATGCTCACACAATTGA+AGG | 0.491760 | 2.2:+54727510 | MS.gene070227:CDS |
| TGTTGAAACAGAGATATTTG+TGG | 0.497398 | 2.2:-54725098 | None:intergenic |
| GTCATGACGGAGCGCTGCTA+TGG | 0.499791 | 2.2:+54726194 | MS.gene070227:CDS |
| GCTTCACCCAATTACCTCTC+TGG | 0.500095 | 2.2:-54725324 | None:intergenic |
| CAGTCCGATGGACAGTCCTC+GGG | 0.520332 | 2.2:-54725949 | None:intergenic |
| TAAGAACCTCATCAACACTT+TGG | 0.520508 | 2.2:+54725252 | MS.gene070227:CDS |
| TAGAAACTTCAACTTATGGC+AGG | 0.529444 | 2.2:+54726902 | MS.gene070227:CDS |
| ACAGTCCGATGGACAGTCCT+CGG | 0.535368 | 2.2:-54725950 | None:intergenic |
| GAAATGTGTTGTTCATCAGA+AGG | 0.540952 | 2.2:+54725228 | MS.gene070227:CDS |
| TTTAGCCAATTGAGCAGCAA+AGG | 0.545220 | 2.2:-54727092 | None:intergenic |
| AAAGCAAAAGATAGACCTCC+TGG | 0.545248 | 2.2:+54727112 | MS.gene070227:CDS |
| TTAGACGGCCGTCCGATGAG+TGG | 0.552985 | 2.2:+54727034 | MS.gene070227:CDS |
| GCATCTCTTATTGGCTCTAA+GGG | 0.555107 | 2.2:+54727972 | MS.gene070227:CDS |
| TGTTCGTTGCAGATAATGGC+TGG | 0.555418 | 2.2:+54725058 | None:intergenic |
| TTGAAGCAGCTCCACCATGT+TGG | 0.555464 | 2.2:-54727933 | None:intergenic |
| CTTTCGCGCGTAGCCACCAT+AGG | 0.556649 | 2.2:-54727739 | None:intergenic |
| AATTGGGTGAAGCTCATTTG+TGG | 0.561203 | 2.2:+54725334 | MS.gene070227:CDS |
| TCCACCATGTTGGGATTGCA+TGG | 0.562511 | 2.2:-54727923 | None:intergenic |
| CCGCTAATTAAAGCGTGTGA+TGG | 0.565743 | 2.2:-54727711 | None:intergenic |
| ACGGAGCGCTGCTATGGCTG+TGG | 0.573022 | 2.2:+54726200 | MS.gene070227:CDS |
| TTGGTTTACACTCTTGCTGG+AGG | 0.575304 | 2.2:+54725397 | MS.gene070227:CDS |
| GTTGTGAGTGCTGTGAATGA+AGG | 0.582088 | 2.2:+54725570 | MS.gene070227:CDS |
| ATGAGTGGAGATATTGGGAG+AGG | 0.585956 | 2.2:+54727049 | MS.gene070227:CDS |
| CTATGGTGGCTACGCGCGAA+AGG | 0.602405 | 2.2:+54727740 | MS.gene070227:CDS |
| CGAAACACCAAGAGTACTGA+AGG | 0.602463 | 2.2:+54726053 | MS.gene070227:CDS |
| TGATCCCGAGGACTGTCCAT+CGG | 0.604988 | 2.2:+54725945 | MS.gene070227:CDS |
| CTTAACAGAATTTGATCCCG+AGG | 0.610386 | 2.2:+54725933 | MS.gene070227:intron |
| GGAATGAGATTGCATTAGCA+GGG | 0.613865 | 2.2:-54725996 | None:intergenic |
| CTCCCAATATCTCCACTCAT+CGG | 0.614980 | 2.2:-54727046 | None:intergenic |
| CAAGGGCGTGAACAGTCCGA+TGG | 0.615557 | 2.2:-54725961 | None:intergenic |
| GAAGCTCCAAAGTGTTGATG+AGG | 0.621149 | 2.2:-54725258 | None:intergenic |
| CATGCAGGACGGAGTCATGA+CGG | 0.622915 | 2.2:+54726181 | MS.gene070227:intron |
| GATGATGATGATGAAATGGA+AGG | 0.624179 | 2.2:-54725280 | None:intergenic |
| TAGAGATCCATACAAGTGCA+AGG | 0.633756 | 2.2:+54726437 | MS.gene070227:CDS |
| ATGTATAAACTAAAGTTAGA+CGG | 0.636370 | 2.2:+54727019 | MS.gene070227:intron |
| AGATCCATGCAATCCCAACA+TGG | 0.647702 | 2.2:+54727919 | MS.gene070227:CDS |
| CCTCTCTGGAGAGACTCAAG+TGG | 0.651836 | 2.2:-54725310 | None:intergenic |
| ATTAGCGGCATAGCCTATGG+TGG | 0.654448 | 2.2:+54727726 | MS.gene070227:CDS |
| CAATATCTCCACTCATCGGA+CGG | 0.667049 | 2.2:-54727042 | None:intergenic |
| TTGGCACTGATCATAACCCA+AGG | 0.681579 | 2.2:-54725633 | None:intergenic |
| CCACTTGAGTCTCTCCAGAG+AGG | 0.698123 | 2.2:+54725310 | MS.gene070227:CDS |
| TCCATGCAATCCCAACATGG+TGG | 0.701127 | 2.2:+54727922 | MS.gene070227:CDS |
| TCTGTTTCAACAAAACACAA+CGG | 0.706458 | 2.2:+54725109 | MS.gene070227:CDS |
| TGTGAATGAAGGAATTGAAG+CGG | 0.725569 | 2.2:+54725581 | MS.gene070227:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATATTACACAAAAATAATTA+AGG | - | chr2.2:54726308-54726327 | None:intergenic | 10.0% |
| !! | TATTACACAAAAATAATTAA+GGG | - | chr2.2:54726307-54726326 | None:intergenic | 10.0% |
| !! | TAAGAATTTATAATATCAGA+TGG | - | chr2.2:54726279-54726298 | None:intergenic | 15.0% |
| !!! | ATTTCTACATTTAAAACTTT+TGG | + | chr2.2:54725743-54725762 | MS.gene070227:intron | 15.0% |
| !! | AATAAACATGGAATAGAATT+TGG | - | chr2.2:54726979-54726998 | None:intergenic | 20.0% |
| !! | ATGATAGATATAAATCCTAA+AGG | - | chr2.2:54727432-54727451 | None:intergenic | 20.0% |
| !! | ATGTATAAACTAAAGTTAGA+CGG | + | chr2.2:54727019-54727038 | MS.gene070227:intron | 20.0% |
| !! | ATTTACTATTAAAATGATCC+AGG | + | chr2.2:54726806-54726825 | MS.gene070227:intron | 20.0% |
| !! | TAAAACTTGTAATGTTGAAT+TGG | + | chr2.2:54726152-54726171 | MS.gene070227:intron | 20.0% |
| !!! | ATATACTTTTCATATTGATC+AGG | + | chr2.2:54726346-54726365 | MS.gene070227:intron | 20.0% |
| !!! | ATCACTTTTCAATAAATACT+CGG | + | chr2.2:54726754-54726773 | MS.gene070227:intron | 20.0% |
| !!! | ATCCTACTTATTTTATCATA+GGG | - | chr2.2:54726245-54726264 | None:intergenic | 20.0% |
| !!! | TATCCTACTTATTTTATCAT+AGG | - | chr2.2:54726246-54726265 | None:intergenic | 20.0% |
| ! | AAACTTTAATCTATGCTTAC+TGG | + | chr2.2:54725881-54725900 | MS.gene070227:intron | 25.0% |
| ! | AATTCAAGAATTGGATTATG+TGG | + | chr2.2:54725505-54725524 | MS.gene070227:intron | 25.0% |
| ! | ATCTTAGAAACTTCAACTTA+TGG | + | chr2.2:54726898-54726917 | MS.gene070227:CDS | 25.0% |
| ! | ATTGAAGGATTGAAAAAAGA+AGG | + | chr2.2:54727525-54727544 | MS.gene070227:CDS | 25.0% |
| ! | CAGTTATATTCTAGTATTTC+AGG | - | chr2.2:54726476-54726495 | None:intergenic | 25.0% |
| ! | GAAAAATCAATCAAAGATCA+TGG | - | chr2.2:54726570-54726589 | None:intergenic | 25.0% |
| ! | TGATATCAAAAATCTCAGTT+TGG | + | chr2.2:54725378-54725397 | MS.gene070227:CDS | 25.0% |
| ! | TTTATAATATCAGATGGAAC+TGG | - | chr2.2:54726273-54726292 | None:intergenic | 25.0% |
| !! | AATTTAGAACAGAAACAGAA+TGG | - | chr2.2:54727803-54727822 | None:intergenic | 25.0% |
| !! | GTCTAACTTTAGTTTATACA+TGG | - | chr2.2:54727020-54727039 | None:intergenic | 25.0% |
| !!! | AAGTTGAAGTTTCTAAGATT+TGG | - | chr2.2:54726897-54726916 | None:intergenic | 25.0% |
| !!! | CTACATTTAAAACTTTTGGA+AGG | + | chr2.2:54725747-54725766 | MS.gene070227:intron | 25.0% |
| !!! | TCCTACTTATTTTATCATAG+GGG | - | chr2.2:54726244-54726263 | None:intergenic | 25.0% |
| !!! | TGGGTTTGTTAAAATAAACA+TGG | - | chr2.2:54726991-54727010 | None:intergenic | 25.0% |
| !!! | TTTCTGTTCTAAATTTTCTG+TGG | + | chr2.2:54727808-54727827 | MS.gene070227:intron | 25.0% |
| AACCAAGCAAATTCAAGAAT+TGG | + | chr2.2:54725496-54725515 | MS.gene070227:intron | 30.0% | |
| AACCTCTTCTAATATTTGAG+GGG | + | chr2.2:54726712-54726731 | MS.gene070227:intron | 30.0% | |
| AATATTACCTTGCACTTGTA+TGG | - | chr2.2:54726447-54726466 | None:intergenic | 30.0% | |
| AATGTTTCATTCCCTTAACA+TGG | + | chr2.2:54727461-54727480 | MS.gene070227:intron | 30.0% | |
| AGTTTATACATGGCAAAGAT+GGG | - | chr2.2:54727010-54727029 | None:intergenic | 30.0% | |
| ATCTGTTGAAAAGAGAGAAA+TGG | - | chr2.2:54726932-54726951 | None:intergenic | 30.0% | |
| ATTGTTGAATCTCCAACATT+AGG | - | chr2.2:54726840-54726859 | None:intergenic | 30.0% | |
| CAAATATTAGAAGAGGTTGA+AGG | - | chr2.2:54726710-54726729 | None:intergenic | 30.0% | |
| CAACCTCTTCTAATATTTGA+GGG | + | chr2.2:54726711-54726730 | MS.gene070227:intron | 30.0% | |
| GACATGATATGAATCTATGA+TGG | + | chr2.2:54727359-54727378 | MS.gene070227:intron | 30.0% | |
| GTAAACTGTTTGAAGAACTA+TGG | + | chr2.2:54726632-54726651 | MS.gene070227:CDS | 30.0% | |
| GTGAAGATCTTTATCATCAT+TGG | - | chr2.2:54725655-54725674 | None:intergenic | 30.0% | |
| TAAAATCTTATCCTGAGTTG+AGG | - | chr2.2:54727265-54727284 | None:intergenic | 30.0% | |
| TAGTTTATACATGGCAAAGA+TGG | - | chr2.2:54727011-54727030 | None:intergenic | 30.0% | |
| TCAACCTCTTCTAATATTTG+AGG | + | chr2.2:54726710-54726729 | MS.gene070227:intron | 30.0% | |
| TCTGTTTCAACAAAACACAA+CGG | + | chr2.2:54725109-54725128 | MS.gene070227:CDS | 30.0% | |
| TGTTGAAACAGAGATATTTG+TGG | - | chr2.2:54725101-54725120 | None:intergenic | 30.0% | |
| TTGAATAAGAACTGTCTTAC+CGG | - | chr2.2:54725688-54725707 | None:intergenic | 30.0% | |
| TTGAATTGGATTTAACATGC+AGG | + | chr2.2:54726166-54726185 | MS.gene070227:intron | 30.0% | |
| TTGTTTGTTTCCAGAATACT+TGG | + | chr2.2:54727656-54727675 | MS.gene070227:intron | 30.0% | |
| ! | ATCCAATTCTTGAATTTGCT+TGG | - | chr2.2:54725501-54725520 | None:intergenic | 30.0% |
| ! | GCGATAAGATTTTTGATGTA+TGG | - | chr2.2:54725721-54725740 | None:intergenic | 30.0% |
| ! | TGATGATGATGATGATGAAA+TGG | - | chr2.2:54725287-54725306 | None:intergenic | 30.0% |
| ! | TTTTCATGATCCAAGTATTC+TGG | - | chr2.2:54727669-54727688 | None:intergenic | 30.0% |
| !! | GGATAAGATTTTAACGAGAT+AGG | + | chr2.2:54727272-54727291 | MS.gene070227:intron | 30.0% |
| AACCCCTCAAATATTAGAAG+AGG | - | chr2.2:54726717-54726736 | None:intergenic | 35.0% | |
| AAGATCTTATCCTGTCATGT+TGG | + | chr2.2:54727227-54727246 | MS.gene070227:intron | 35.0% | |
| ACTAATGCTCACACAATTGA+AGG | + | chr2.2:54727510-54727529 | MS.gene070227:CDS | 35.0% | |
| ATTGGATTTAACATGCAGGA+CGG | + | chr2.2:54726170-54726189 | MS.gene070227:intron | 35.0% | |
| CAACATTAGGTAAACTAACC+TGG | - | chr2.2:54726827-54726846 | None:intergenic | 35.0% | |
| GCCCCTATGATAAAATAAGT+AGG | + | chr2.2:54726240-54726259 | MS.gene070227:intron | 35.0% | |
| GGGATCAAATTCTGTTAAGA+AGG | - | chr2.2:54725932-54725951 | None:intergenic | 35.0% | |
| GTCAAGTTATCGTATCATGA+TGG | + | chr2.2:54727316-54727335 | MS.gene070227:intron | 35.0% | |
| GTCACATTATGTGATGACAT+TGG | + | chr2.2:54727865-54727884 | MS.gene070227:intron | 35.0% | |
| GTTAAAACCTTCAGTACTCT+TGG | - | chr2.2:54726063-54726082 | None:intergenic | 35.0% | |
| TAAGAACCTCATCAACACTT+TGG | + | chr2.2:54725252-54725271 | MS.gene070227:CDS | 35.0% | |
| TAGAAACTTCAACTTATGGC+AGG | + | chr2.2:54726902-54726921 | MS.gene070227:CDS | 35.0% | |
| TAGCATCAACATCATTTCTC+TGG | - | chr2.2:54726417-54726436 | None:intergenic | 35.0% | |
| TCAATAAATACTCGGCTTCA+AGG | + | chr2.2:54726762-54726781 | MS.gene070227:intron | 35.0% | |
| TCTCTATCATGACCATCAAA+CGG | - | chr2.2:54727186-54727205 | None:intergenic | 35.0% | |
| TGTGAATGAAGGAATTGAAG+CGG | + | chr2.2:54725581-54725600 | MS.gene070227:CDS | 35.0% | |
| TTGAATTGTGAATACGAACC+AGG | - | chr2.2:54727133-54727152 | None:intergenic | 35.0% | |
| ! | ATTTTATCATAGGGGCAAAC+TGG | - | chr2.2:54726236-54726255 | None:intergenic | 35.0% |
| ! | CTTTTCATATTGATCAGGAG+AGG | + | chr2.2:54726351-54726370 | MS.gene070227:intron | 35.0% |
| ! | GAAATGTGTTGTTCATCAGA+AGG | + | chr2.2:54725228-54725247 | MS.gene070227:CDS | 35.0% |
| ! | GATGATGATGATGAAATGGA+AGG | - | chr2.2:54725283-54725302 | None:intergenic | 35.0% |
| ! | TTTGATGGTCATGATAGAGA+CGG | + | chr2.2:54727186-54727205 | MS.gene070227:intron | 35.0% |
| !! | AAGATTTTAACGAGATAGGC+AGG | + | chr2.2:54727276-54727295 | MS.gene070227:intron | 35.0% |
| !! | CAGGTTAGTTTACCTAATGT+TGG | + | chr2.2:54726825-54726844 | MS.gene070227:intron | 35.0% |
| !! | CATTTCTTATCCACTTTTGC+TGG | - | chr2.2:54725214-54725233 | None:intergenic | 35.0% |
| AAAGCAAAAGATAGACCTCC+TGG | + | chr2.2:54727112-54727131 | MS.gene070227:CDS | 40.0% | |
| AAGAAAGCCTGCCATGTTAA+GGG | - | chr2.2:54727475-54727494 | None:intergenic | 40.0% | |
| AATAGCCTTTGCTGCTCAAT+TGG | + | chr2.2:54727087-54727106 | MS.gene070227:CDS | 40.0% | |
| AATCCTAAAGGCCAGATCAA+TGG | - | chr2.2:54727420-54727439 | None:intergenic | 40.0% | |
| AATTGGGTGAAGCTCATTTG+TGG | + | chr2.2:54725334-54725353 | MS.gene070227:CDS | 40.0% | |
| AATTGTGAATACGAACCAGG+AGG | - | chr2.2:54727130-54727149 | None:intergenic | 40.0% | |
| ACATCTTATGCTGCCTTAGA+AGG | + | chr2.2:54725610-54725629 | MS.gene070227:CDS | 40.0% | |
| ATGTCTCAATCCAGTGTCTA+AGG | - | chr2.2:54727344-54727363 | None:intergenic | 40.0% | |
| CAGTTTACTCTGCCTATAGA+AGG | - | chr2.2:54726620-54726639 | None:intergenic | 40.0% | |
| CCATCACACGCTTTAATTAG+CGG | + | chr2.2:54727711-54727730 | MS.gene070227:CDS | 40.0% | |
| CTCTATCATGACCATCAAAC+GGG | - | chr2.2:54727185-54727204 | None:intergenic | 40.0% | |
| CTTAACAGAATTTGATCCCG+AGG | + | chr2.2:54725933-54725952 | MS.gene070227:intron | 40.0% | |
| GAGTTAGAAACCAACATGAC+AGG | - | chr2.2:54727240-54727259 | None:intergenic | 40.0% | |
| GATAGAGACGGATAGGATAT+GGG | + | chr2.2:54727198-54727217 | MS.gene070227:intron | 40.0% | |
| GGAATGAGATTGCATTAGCA+GGG | - | chr2.2:54725999-54726018 | None:intergenic | 40.0% | |
| GGCATACATGTTCAGATTGT+TGG | + | chr2.2:54727886-54727905 | MS.gene070227:intron | 40.0% | |
| GTGCTTAATTCCAGCAAAAG+TGG | + | chr2.2:54725201-54725220 | MS.gene070227:intron | 40.0% | |
| GTTTAAGTAATGCTGTCACG+TGG | + | chr2.2:54727565-54727584 | MS.gene070227:intron | 40.0% | |
| TAGAGATCCATACAAGTGCA+AGG | + | chr2.2:54726437-54726456 | MS.gene070227:CDS | 40.0% | |
| TCATCCTGAGCATCTCTTAT+TGG | + | chr2.2:54727963-54727982 | MS.gene070227:CDS | 40.0% | |
| TGATAGAGACGGATAGGATA+TGG | + | chr2.2:54727197-54727216 | MS.gene070227:intron | 40.0% | |
| TGCTAATGCAATCTCATTCC+AGG | + | chr2.2:54725999-54726018 | MS.gene070227:CDS | 40.0% | |
| TGGAATGAGATTGCATTAGC+AGG | - | chr2.2:54726000-54726019 | None:intergenic | 40.0% | |
| TTAATTAGCGGCATAGCCTA+TGG | + | chr2.2:54727723-54727742 | MS.gene070227:CDS | 40.0% | |
| TTTAGCCAATTGAGCAGCAA+AGG | - | chr2.2:54727095-54727114 | None:intergenic | 40.0% | |
| TTTCATTCCCTTAACATGGC+AGG | + | chr2.2:54727465-54727484 | MS.gene070227:intron | 40.0% | |
| TTTGCGAAGTAGATTTCTCC+TGG | - | chr2.2:54726020-54726039 | None:intergenic | 40.0% | |
| ! | AGTTTGGTTTACACTCTTGC+TGG | + | chr2.2:54725394-54725413 | MS.gene070227:CDS | 40.0% |
| ! | CATTTGTGGTGCAAGTTTTG+AGG | + | chr2.2:54725348-54725367 | MS.gene070227:CDS | 40.0% |
| ! | GATGTATCGACACAAGGAAA+TGG | - | chr2.2:54726598-54726617 | None:intergenic | 40.0% |
| ! | GTGTCGATACATCCTTCTAT+AGG | + | chr2.2:54726605-54726624 | MS.gene070227:intron | 40.0% |
| ! | TAGAAGGATGTATCGACACA+AGG | - | chr2.2:54726604-54726623 | None:intergenic | 40.0% |
| !! | AGCATCTCTTATTGGCTCTA+AGG | + | chr2.2:54727971-54727990 | MS.gene070227:CDS | 40.0% |
| !! | CTTCAGTACTCTTGGTGTTT+CGG | - | chr2.2:54726055-54726074 | None:intergenic | 40.0% |
| !! | GCATCTCTTATTGGCTCTAA+GGG | + | chr2.2:54727972-54727991 | MS.gene070227:CDS | 40.0% |
| AGAGCCAATAAGAGATGCTC+AGG | - | chr2.2:54727970-54727989 | None:intergenic | 45.0% | |
| AGATCCATGCAATCCCAACA+TGG | + | chr2.2:54727919-54727938 | MS.gene070227:CDS | 45.0% | |
| AGGGAAGCTCTTGCTTTGAT+TGG | + | chr2.2:54727991-54728010 | MS.gene070227:CDS | 45.0% | |
| AGTCTCTCCAGAGAGGTAAT+TGG | + | chr2.2:54725317-54725336 | MS.gene070227:CDS | 45.0% | |
| ATGAGTGGAGATATTGGGAG+AGG | + | chr2.2:54727049-54727068 | MS.gene070227:CDS | 45.0% | |
| CAATATCTCCACTCATCGGA+CGG | - | chr2.2:54727045-54727064 | None:intergenic | 45.0% | |
| CAGGATGAGAGAGACATGAT+AGG | - | chr2.2:54727396-54727415 | None:intergenic | 45.0% | |
| CCGCTAATTAAAGCGTGTGA+TGG | - | chr2.2:54727714-54727733 | None:intergenic | 45.0% | |
| CTATCATGTCTCTCTCATCC+TGG | + | chr2.2:54727394-54727413 | MS.gene070227:intron | 45.0% | |
| CTCCCAATATCTCCACTCAT+CGG | - | chr2.2:54727049-54727068 | None:intergenic | 45.0% | |
| GAAGAAAGCCTGCCATGTTA+AGG | - | chr2.2:54727476-54727495 | None:intergenic | 45.0% | |
| GAAGAACTATGGCGTGCTTT+AGG | + | chr2.2:54726643-54726662 | MS.gene070227:CDS | 45.0% | |
| GATCTTCACTTTCGCAAAGC+CGG | + | chr2.2:54725666-54725685 | MS.gene070227:CDS | 45.0% | |
| GCAGGATATGATACGTGACA+TGG | + | chr2.2:54727294-54727313 | MS.gene070227:intron | 45.0% | |
| GTCCGATGAGTGGAGATATT+GGG | + | chr2.2:54727044-54727063 | MS.gene070227:CDS | 45.0% | |
| GTCTCTCCAGAGAGGTAATT+GGG | + | chr2.2:54725318-54725337 | MS.gene070227:CDS | 45.0% | |
| TATTGGGAGAGGAGCAACTA+AGG | + | chr2.2:54727060-54727079 | MS.gene070227:CDS | 45.0% | |
| TCATAACCCAAGGCCTTCTA+AGG | - | chr2.2:54725626-54725645 | None:intergenic | 45.0% | |
| TCTTCACAAGACCCGTTTGA+TGG | + | chr2.2:54727171-54727190 | MS.gene070227:intron | 45.0% | |
| TGGTCATGATAGAGACGGAT+AGG | + | chr2.2:54727191-54727210 | MS.gene070227:intron | 45.0% | |
| TTCTAACTCAGCCTCAACTC+AGG | + | chr2.2:54727251-54727270 | MS.gene070227:intron | 45.0% | |
| TTGGTTTACACTCTTGCTGG+AGG | + | chr2.2:54725397-54725416 | MS.gene070227:CDS | 45.0% | |
| ! | CAGGGCAAACATTTTCGCAA+GGG | - | chr2.2:54725981-54726000 | None:intergenic | 45.0% |
| ! | GTTGTGAGTGCTGTGAATGA+AGG | + | chr2.2:54725570-54725589 | MS.gene070227:CDS | 45.0% |
| !! | CGAAACACCAAGAGTACTGA+AGG | + | chr2.2:54726053-54726072 | MS.gene070227:CDS | 45.0% |
| !! | GAAGCTCCAAAGTGTTGATG+AGG | - | chr2.2:54725261-54725280 | None:intergenic | 45.0% |
| !! | TTGGCACTGATCATAACCCA+AGG | - | chr2.2:54725636-54725655 | None:intergenic | 45.0% |
| ATGCTGCCTTAGAAGGCCTT+GGG | + | chr2.2:54725617-54725636 | MS.gene070227:CDS | 50.0% | |
| ATTAGCGGCATAGCCTATGG+TGG | + | chr2.2:54727726-54727745 | MS.gene070227:CDS | 50.0% | |
| CATGATGGCTCCTTAGACAC+TGG | + | chr2.2:54727331-54727350 | MS.gene070227:intron | 50.0% | |
| CGTCCGATGAGTGGAGATAT+TGG | + | chr2.2:54727043-54727062 | MS.gene070227:CDS | 50.0% | |
| GCAGGCTTTCTTCAACTTGC+TGG | + | chr2.2:54727483-54727502 | MS.gene070227:intron | 50.0% | |
| GCTTCACCCAATTACCTCTC+TGG | - | chr2.2:54725327-54725346 | None:intergenic | 50.0% | |
| TAAAGGCCAGATCAATGGCC+AGG | - | chr2.2:54727415-54727434 | None:intergenic | 50.0% | |
| TATGCTGCCTTAGAAGGCCT+TGG | + | chr2.2:54725616-54725635 | MS.gene070227:CDS | 50.0% | |
| TCCACCATGTTGGGATTGCA+TGG | - | chr2.2:54727926-54727945 | None:intergenic | 50.0% | |
| TCCATGCAATCCCAACATGG+TGG | + | chr2.2:54727922-54727941 | MS.gene070227:CDS | 50.0% | |
| TCTCATCCTGGCCATTGATC+TGG | + | chr2.2:54727406-54727425 | MS.gene070227:intron | 50.0% | |
| TGAAGCAGCTCCACCATGTT+GGG | - | chr2.2:54727935-54727954 | None:intergenic | 50.0% | |
| TTGAAGCAGCTCCACCATGT+TGG | - | chr2.2:54727936-54727955 | None:intergenic | 50.0% | |
| TTGAAGCTAGTCGCCGTAAG+TGG | + | chr2.2:54726682-54726701 | MS.gene070227:intron | 50.0% | |
| ! | GCAGGGCAAACATTTTCGCA+AGG | - | chr2.2:54725982-54726001 | None:intergenic | 50.0% |
| ! | TGGCCATTGATCTGGCCTTT+AGG | + | chr2.2:54727414-54727433 | MS.gene070227:intron | 50.0% |
| !! | GAGGTTGAAGGCACCACTTA+CGG | - | chr2.2:54726698-54726717 | None:intergenic | 50.0% |
| !! | GGCTTTCTTCAACTTGCTGG+TGG | + | chr2.2:54727486-54727505 | MS.gene070227:intron | 50.0% |
| ACAGTCCGATGGACAGTCCT+CGG | - | chr2.2:54725953-54725972 | None:intergenic | 55.0% | |
| CATGCAGGACGGAGTCATGA+CGG | + | chr2.2:54726181-54726200 | MS.gene070227:intron | 55.0% | |
| CCACTTGAGTCTCTCCAGAG+AGG | + | chr2.2:54725310-54725329 | MS.gene070227:CDS | 55.0% | |
| TGATCCCGAGGACTGTCCAT+CGG | + | chr2.2:54725945-54725964 | MS.gene070227:CDS | 55.0% | |
| ! | CCTCTCTGGAGAGACTCAAG+TGG | - | chr2.2:54725313-54725332 | None:intergenic | 55.0% |
| CAGTCCGATGGACAGTCCTC+GGG | - | chr2.2:54725952-54725971 | None:intergenic | 60.0% | |
| CTATGGTGGCTACGCGCGAA+AGG | + | chr2.2:54727740-54727759 | MS.gene070227:CDS | 60.0% | |
| CTTTCGCGCGTAGCCACCAT+AGG | - | chr2.2:54727742-54727761 | None:intergenic | 60.0% | |
| TTAGACGGCCGTCCGATGAG+TGG | + | chr2.2:54727034-54727053 | MS.gene070227:CDS | 60.0% | |
| ! | CAAGGGCGTGAACAGTCCGA+TGG | - | chr2.2:54725964-54725983 | None:intergenic | 60.0% |
| !! | GTCATGACGGAGCGCTGCTA+TGG | + | chr2.2:54726194-54726213 | MS.gene070227:CDS | 60.0% |
| !! | ACGGAGCGCTGCTATGGCTG+TGG | + | chr2.2:54726200-54726219 | MS.gene070227:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2.2 | gene | 54725073 | 54728032 | 54725073 | ID=MS.gene070227 |
| chr2.2 | mRNA | 54725073 | 54728032 | 54725073 | ID=MS.gene070227.t1;Parent=MS.gene070227 |
| chr2.2 | exon | 54725073 | 54725130 | 54725073 | ID=MS.gene070227.t1.exon1;Parent=MS.gene070227.t1 |
| chr2.2 | CDS | 54725073 | 54725130 | 54725073 | ID=cds.MS.gene070227.t1;Parent=MS.gene070227.t1 |
| chr2.2 | exon | 54725215 | 54725418 | 54725215 | ID=MS.gene070227.t1.exon2;Parent=MS.gene070227.t1 |
| chr2.2 | CDS | 54725215 | 54725418 | 54725215 | ID=cds.MS.gene070227.t1;Parent=MS.gene070227.t1 |
| chr2.2 | exon | 54725538 | 54725687 | 54725538 | ID=MS.gene070227.t1.exon3;Parent=MS.gene070227.t1 |
| chr2.2 | CDS | 54725538 | 54725687 | 54725538 | ID=cds.MS.gene070227.t1;Parent=MS.gene070227.t1 |
| chr2.2 | exon | 54725941 | 54726074 | 54725941 | ID=MS.gene070227.t1.exon4;Parent=MS.gene070227.t1 |
| chr2.2 | CDS | 54725941 | 54726074 | 54725941 | ID=cds.MS.gene070227.t1;Parent=MS.gene070227.t1 |
| chr2.2 | exon | 54726188 | 54726257 | 54726188 | ID=MS.gene070227.t1.exon5;Parent=MS.gene070227.t1 |
| chr2.2 | CDS | 54726188 | 54726257 | 54726188 | ID=cds.MS.gene070227.t1;Parent=MS.gene070227.t1 |
| chr2.2 | exon | 54726368 | 54726458 | 54726368 | ID=MS.gene070227.t1.exon6;Parent=MS.gene070227.t1 |
| chr2.2 | CDS | 54726368 | 54726458 | 54726368 | ID=cds.MS.gene070227.t1;Parent=MS.gene070227.t1 |
| chr2.2 | exon | 54726627 | 54726696 | 54726627 | ID=MS.gene070227.t1.exon7;Parent=MS.gene070227.t1 |
| chr2.2 | CDS | 54726627 | 54726696 | 54726627 | ID=cds.MS.gene070227.t1;Parent=MS.gene070227.t1 |
| chr2.2 | exon | 54726828 | 54726923 | 54726828 | ID=MS.gene070227.t1.exon8;Parent=MS.gene070227.t1 |
| chr2.2 | CDS | 54726828 | 54726923 | 54726828 | ID=cds.MS.gene070227.t1;Parent=MS.gene070227.t1 |
| chr2.2 | exon | 54727034 | 54727133 | 54727034 | ID=MS.gene070227.t1.exon9;Parent=MS.gene070227.t1 |
| chr2.2 | CDS | 54727034 | 54727133 | 54727034 | ID=cds.MS.gene070227.t1;Parent=MS.gene070227.t1 |
| chr2.2 | exon | 54727487 | 54727570 | 54727487 | ID=MS.gene070227.t1.exon10;Parent=MS.gene070227.t1 |
| chr2.2 | CDS | 54727487 | 54727570 | 54727487 | ID=cds.MS.gene070227.t1;Parent=MS.gene070227.t1 |
| chr2.2 | exon | 54727670 | 54727761 | 54727670 | ID=MS.gene070227.t1.exon11;Parent=MS.gene070227.t1 |
| chr2.2 | CDS | 54727670 | 54727761 | 54727670 | ID=cds.MS.gene070227.t1;Parent=MS.gene070227.t1 |
| chr2.2 | exon | 54727901 | 54728032 | 54727901 | ID=MS.gene070227.t1.exon12;Parent=MS.gene070227.t1 |
| chr2.2 | CDS | 54727901 | 54728032 | 54727901 | ID=cds.MS.gene070227.t1;Parent=MS.gene070227.t1 |
| Gene Sequence |
| Protein sequence |
