AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene070227


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene070227.t1 MTR_2g034140 96.059 406 15 1 20 425 6 410 0.0 808
MS.gene070227.t1 MTR_2g034140 95.529 425 18 1 1 425 1 424 0.0 788
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 83 sgRNAs with CRISPR-Local

Find 170 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCATCCTGAGCATCTCTTAT+TGG 0.255116 2.2:+54727963 MS.gene070227:CDS
GCAGGCTTTCTTCAACTTGC+TGG 0.275625 2.2:+54727483 MS.gene070227:intron
AATATTACCTTGCACTTGTA+TGG 0.276099 2.2:-54726444 None:intergenic
AGTCTCTCCAGAGAGGTAAT+TGG 0.280375 2.2:+54725317 MS.gene070227:CDS
AGCATCTCTTATTGGCTCTA+AGG 0.283609 2.2:+54727971 MS.gene070227:CDS
AGGGAAGCTCTTGCTTTGAT+TGG 0.323169 2.2:+54727991 MS.gene070227:CDS
CTTCAGTACTCTTGGTGTTT+CGG 0.323610 2.2:-54726052 None:intergenic
ACATCTTATGCTGCCTTAGA+AGG 0.333220 2.2:+54725610 MS.gene070227:CDS
GAAGAACTATGGCGTGCTTT+AGG 0.333345 2.2:+54726643 MS.gene070227:CDS
AAGTTGAAGTTTCTAAGATT+TGG 0.338252 2.2:-54726894 None:intergenic
ATCTTAGAAACTTCAACTTA+TGG 0.342098 2.2:+54726898 MS.gene070227:CDS
ATTGTTGAATCTCCAACATT+AGG 0.343139 2.2:-54726837 None:intergenic
ATAGATTATTGACATTTAAC+AGG 0.344744 2.2:-54728015 None:intergenic
AGTTTGGTTTACACTCTTGC+TGG 0.350609 2.2:+54725394 MS.gene070227:CDS
TATGCTGCCTTAGAAGGCCT+TGG 0.350897 2.2:+54725616 MS.gene070227:CDS
GTGAAGATCTTTATCATCAT+TGG 0.352123 2.2:-54725652 None:intergenic
CGTCCGATGAGTGGAGATAT+TGG 0.364584 2.2:+54727043 MS.gene070227:CDS
TCATAACCCAAGGCCTTCTA+AGG 0.373122 2.2:-54725623 None:intergenic
AATAGCCTTTGCTGCTCAAT+TGG 0.377573 2.2:+54727087 MS.gene070227:CDS
TGCTAATGCAATCTCATTCC+AGG 0.384899 2.2:+54725999 MS.gene070227:CDS
GGCATACATGTTCAGATTGT+TGG 0.392739 2.2:+54727886 MS.gene070227:intron
GTAAACTGTTTGAAGAACTA+TGG 0.401548 2.2:+54726632 MS.gene070227:CDS
ATGCTGCCTTAGAAGGCCTT+GGG 0.406090 2.2:+54725617 MS.gene070227:CDS
TGAAGCAGCTCCACCATGTT+GGG 0.410865 2.2:-54727932 None:intergenic
TTGTTTGTTTCCAGAATACT+TGG 0.412856 2.2:+54727656 MS.gene070227:intron
GTCCGATGAGTGGAGATATT+GGG 0.417237 2.2:+54727044 MS.gene070227:CDS
GTTAAAACCTTCAGTACTCT+TGG 0.418097 2.2:-54726060 None:intergenic
TAGCATCAACATCATTTCTC+TGG 0.438762 2.2:-54726414 None:intergenic
TATTGGGAGAGGAGCAACTA+AGG 0.440476 2.2:+54727060 MS.gene070227:CDS
CAGGTTAGTTTACCTAATGT+TGG 0.448264 2.2:+54726825 MS.gene070227:intron
GTCTCTCCAGAGAGGTAATT+GGG 0.449708 2.2:+54725318 MS.gene070227:CDS
TTTGCGAAGTAGATTTCTCC+TGG 0.450649 2.2:-54726017 None:intergenic
TGGAATGAGATTGCATTAGC+AGG 0.453245 2.2:-54725997 None:intergenic
GGCTTTCTTCAACTTGCTGG+TGG 0.463509 2.2:+54727486 MS.gene070227:intron
GTGCTTAATTCCAGCAAAAG+TGG 0.464416 2.2:+54725201 MS.gene070227:intron
CCATCACACGCTTTAATTAG+CGG 0.467340 2.2:+54727711 MS.gene070227:CDS
GATCTTCACTTTCGCAAAGC+CGG 0.473240 2.2:+54725666 MS.gene070227:CDS
TTAATTAGCGGCATAGCCTA+TGG 0.484285 2.2:+54727723 MS.gene070227:CDS
AGAGCCAATAAGAGATGCTC+AGG 0.491628 2.2:-54727967 None:intergenic
ACTAATGCTCACACAATTGA+AGG 0.491760 2.2:+54727510 MS.gene070227:CDS
TGTTGAAACAGAGATATTTG+TGG 0.497398 2.2:-54725098 None:intergenic
GTCATGACGGAGCGCTGCTA+TGG 0.499791 2.2:+54726194 MS.gene070227:CDS
GCTTCACCCAATTACCTCTC+TGG 0.500095 2.2:-54725324 None:intergenic
CAGTCCGATGGACAGTCCTC+GGG 0.520332 2.2:-54725949 None:intergenic
TAAGAACCTCATCAACACTT+TGG 0.520508 2.2:+54725252 MS.gene070227:CDS
TAGAAACTTCAACTTATGGC+AGG 0.529444 2.2:+54726902 MS.gene070227:CDS
ACAGTCCGATGGACAGTCCT+CGG 0.535368 2.2:-54725950 None:intergenic
GAAATGTGTTGTTCATCAGA+AGG 0.540952 2.2:+54725228 MS.gene070227:CDS
TTTAGCCAATTGAGCAGCAA+AGG 0.545220 2.2:-54727092 None:intergenic
AAAGCAAAAGATAGACCTCC+TGG 0.545248 2.2:+54727112 MS.gene070227:CDS
TTAGACGGCCGTCCGATGAG+TGG 0.552985 2.2:+54727034 MS.gene070227:CDS
GCATCTCTTATTGGCTCTAA+GGG 0.555107 2.2:+54727972 MS.gene070227:CDS
TGTTCGTTGCAGATAATGGC+TGG 0.555418 2.2:+54725058 None:intergenic
TTGAAGCAGCTCCACCATGT+TGG 0.555464 2.2:-54727933 None:intergenic
CTTTCGCGCGTAGCCACCAT+AGG 0.556649 2.2:-54727739 None:intergenic
AATTGGGTGAAGCTCATTTG+TGG 0.561203 2.2:+54725334 MS.gene070227:CDS
TCCACCATGTTGGGATTGCA+TGG 0.562511 2.2:-54727923 None:intergenic
CCGCTAATTAAAGCGTGTGA+TGG 0.565743 2.2:-54727711 None:intergenic
ACGGAGCGCTGCTATGGCTG+TGG 0.573022 2.2:+54726200 MS.gene070227:CDS
TTGGTTTACACTCTTGCTGG+AGG 0.575304 2.2:+54725397 MS.gene070227:CDS
GTTGTGAGTGCTGTGAATGA+AGG 0.582088 2.2:+54725570 MS.gene070227:CDS
ATGAGTGGAGATATTGGGAG+AGG 0.585956 2.2:+54727049 MS.gene070227:CDS
CTATGGTGGCTACGCGCGAA+AGG 0.602405 2.2:+54727740 MS.gene070227:CDS
CGAAACACCAAGAGTACTGA+AGG 0.602463 2.2:+54726053 MS.gene070227:CDS
TGATCCCGAGGACTGTCCAT+CGG 0.604988 2.2:+54725945 MS.gene070227:CDS
CTTAACAGAATTTGATCCCG+AGG 0.610386 2.2:+54725933 MS.gene070227:intron
GGAATGAGATTGCATTAGCA+GGG 0.613865 2.2:-54725996 None:intergenic
CTCCCAATATCTCCACTCAT+CGG 0.614980 2.2:-54727046 None:intergenic
CAAGGGCGTGAACAGTCCGA+TGG 0.615557 2.2:-54725961 None:intergenic
GAAGCTCCAAAGTGTTGATG+AGG 0.621149 2.2:-54725258 None:intergenic
CATGCAGGACGGAGTCATGA+CGG 0.622915 2.2:+54726181 MS.gene070227:intron
GATGATGATGATGAAATGGA+AGG 0.624179 2.2:-54725280 None:intergenic
TAGAGATCCATACAAGTGCA+AGG 0.633756 2.2:+54726437 MS.gene070227:CDS
ATGTATAAACTAAAGTTAGA+CGG 0.636370 2.2:+54727019 MS.gene070227:intron
AGATCCATGCAATCCCAACA+TGG 0.647702 2.2:+54727919 MS.gene070227:CDS
CCTCTCTGGAGAGACTCAAG+TGG 0.651836 2.2:-54725310 None:intergenic
ATTAGCGGCATAGCCTATGG+TGG 0.654448 2.2:+54727726 MS.gene070227:CDS
CAATATCTCCACTCATCGGA+CGG 0.667049 2.2:-54727042 None:intergenic
TTGGCACTGATCATAACCCA+AGG 0.681579 2.2:-54725633 None:intergenic
CCACTTGAGTCTCTCCAGAG+AGG 0.698123 2.2:+54725310 MS.gene070227:CDS
TCCATGCAATCCCAACATGG+TGG 0.701127 2.2:+54727922 MS.gene070227:CDS
TCTGTTTCAACAAAACACAA+CGG 0.706458 2.2:+54725109 MS.gene070227:CDS
TGTGAATGAAGGAATTGAAG+CGG 0.725569 2.2:+54725581 MS.gene070227:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATATTACACAAAAATAATTA+AGG - chr2.2:54726308-54726327 None:intergenic 10.0%
!! TATTACACAAAAATAATTAA+GGG - chr2.2:54726307-54726326 None:intergenic 10.0%
!! TAAGAATTTATAATATCAGA+TGG - chr2.2:54726279-54726298 None:intergenic 15.0%
!!! ATTTCTACATTTAAAACTTT+TGG + chr2.2:54725743-54725762 MS.gene070227:intron 15.0%
!! AATAAACATGGAATAGAATT+TGG - chr2.2:54726979-54726998 None:intergenic 20.0%
!! ATGATAGATATAAATCCTAA+AGG - chr2.2:54727432-54727451 None:intergenic 20.0%
!! ATGTATAAACTAAAGTTAGA+CGG + chr2.2:54727019-54727038 MS.gene070227:intron 20.0%
!! ATTTACTATTAAAATGATCC+AGG + chr2.2:54726806-54726825 MS.gene070227:intron 20.0%
!! TAAAACTTGTAATGTTGAAT+TGG + chr2.2:54726152-54726171 MS.gene070227:intron 20.0%
!!! ATATACTTTTCATATTGATC+AGG + chr2.2:54726346-54726365 MS.gene070227:intron 20.0%
!!! ATCACTTTTCAATAAATACT+CGG + chr2.2:54726754-54726773 MS.gene070227:intron 20.0%
!!! ATCCTACTTATTTTATCATA+GGG - chr2.2:54726245-54726264 None:intergenic 20.0%
!!! TATCCTACTTATTTTATCAT+AGG - chr2.2:54726246-54726265 None:intergenic 20.0%
! AAACTTTAATCTATGCTTAC+TGG + chr2.2:54725881-54725900 MS.gene070227:intron 25.0%
! AATTCAAGAATTGGATTATG+TGG + chr2.2:54725505-54725524 MS.gene070227:intron 25.0%
! ATCTTAGAAACTTCAACTTA+TGG + chr2.2:54726898-54726917 MS.gene070227:CDS 25.0%
! ATTGAAGGATTGAAAAAAGA+AGG + chr2.2:54727525-54727544 MS.gene070227:CDS 25.0%
! CAGTTATATTCTAGTATTTC+AGG - chr2.2:54726476-54726495 None:intergenic 25.0%
! GAAAAATCAATCAAAGATCA+TGG - chr2.2:54726570-54726589 None:intergenic 25.0%
! TGATATCAAAAATCTCAGTT+TGG + chr2.2:54725378-54725397 MS.gene070227:CDS 25.0%
! TTTATAATATCAGATGGAAC+TGG - chr2.2:54726273-54726292 None:intergenic 25.0%
!! AATTTAGAACAGAAACAGAA+TGG - chr2.2:54727803-54727822 None:intergenic 25.0%
!! GTCTAACTTTAGTTTATACA+TGG - chr2.2:54727020-54727039 None:intergenic 25.0%
!!! AAGTTGAAGTTTCTAAGATT+TGG - chr2.2:54726897-54726916 None:intergenic 25.0%
!!! CTACATTTAAAACTTTTGGA+AGG + chr2.2:54725747-54725766 MS.gene070227:intron 25.0%
!!! TCCTACTTATTTTATCATAG+GGG - chr2.2:54726244-54726263 None:intergenic 25.0%
!!! TGGGTTTGTTAAAATAAACA+TGG - chr2.2:54726991-54727010 None:intergenic 25.0%
!!! TTTCTGTTCTAAATTTTCTG+TGG + chr2.2:54727808-54727827 MS.gene070227:intron 25.0%
AACCAAGCAAATTCAAGAAT+TGG + chr2.2:54725496-54725515 MS.gene070227:intron 30.0%
AACCTCTTCTAATATTTGAG+GGG + chr2.2:54726712-54726731 MS.gene070227:intron 30.0%
AATATTACCTTGCACTTGTA+TGG - chr2.2:54726447-54726466 None:intergenic 30.0%
AATGTTTCATTCCCTTAACA+TGG + chr2.2:54727461-54727480 MS.gene070227:intron 30.0%
AGTTTATACATGGCAAAGAT+GGG - chr2.2:54727010-54727029 None:intergenic 30.0%
ATCTGTTGAAAAGAGAGAAA+TGG - chr2.2:54726932-54726951 None:intergenic 30.0%
ATTGTTGAATCTCCAACATT+AGG - chr2.2:54726840-54726859 None:intergenic 30.0%
CAAATATTAGAAGAGGTTGA+AGG - chr2.2:54726710-54726729 None:intergenic 30.0%
CAACCTCTTCTAATATTTGA+GGG + chr2.2:54726711-54726730 MS.gene070227:intron 30.0%
GACATGATATGAATCTATGA+TGG + chr2.2:54727359-54727378 MS.gene070227:intron 30.0%
GTAAACTGTTTGAAGAACTA+TGG + chr2.2:54726632-54726651 MS.gene070227:CDS 30.0%
GTGAAGATCTTTATCATCAT+TGG - chr2.2:54725655-54725674 None:intergenic 30.0%
TAAAATCTTATCCTGAGTTG+AGG - chr2.2:54727265-54727284 None:intergenic 30.0%
TAGTTTATACATGGCAAAGA+TGG - chr2.2:54727011-54727030 None:intergenic 30.0%
TCAACCTCTTCTAATATTTG+AGG + chr2.2:54726710-54726729 MS.gene070227:intron 30.0%
TCTGTTTCAACAAAACACAA+CGG + chr2.2:54725109-54725128 MS.gene070227:CDS 30.0%
TGTTGAAACAGAGATATTTG+TGG - chr2.2:54725101-54725120 None:intergenic 30.0%
TTGAATAAGAACTGTCTTAC+CGG - chr2.2:54725688-54725707 None:intergenic 30.0%
TTGAATTGGATTTAACATGC+AGG + chr2.2:54726166-54726185 MS.gene070227:intron 30.0%
TTGTTTGTTTCCAGAATACT+TGG + chr2.2:54727656-54727675 MS.gene070227:intron 30.0%
! ATCCAATTCTTGAATTTGCT+TGG - chr2.2:54725501-54725520 None:intergenic 30.0%
! GCGATAAGATTTTTGATGTA+TGG - chr2.2:54725721-54725740 None:intergenic 30.0%
! TGATGATGATGATGATGAAA+TGG - chr2.2:54725287-54725306 None:intergenic 30.0%
! TTTTCATGATCCAAGTATTC+TGG - chr2.2:54727669-54727688 None:intergenic 30.0%
!! GGATAAGATTTTAACGAGAT+AGG + chr2.2:54727272-54727291 MS.gene070227:intron 30.0%
AACCCCTCAAATATTAGAAG+AGG - chr2.2:54726717-54726736 None:intergenic 35.0%
AAGATCTTATCCTGTCATGT+TGG + chr2.2:54727227-54727246 MS.gene070227:intron 35.0%
ACTAATGCTCACACAATTGA+AGG + chr2.2:54727510-54727529 MS.gene070227:CDS 35.0%
ATTGGATTTAACATGCAGGA+CGG + chr2.2:54726170-54726189 MS.gene070227:intron 35.0%
CAACATTAGGTAAACTAACC+TGG - chr2.2:54726827-54726846 None:intergenic 35.0%
GCCCCTATGATAAAATAAGT+AGG + chr2.2:54726240-54726259 MS.gene070227:intron 35.0%
GGGATCAAATTCTGTTAAGA+AGG - chr2.2:54725932-54725951 None:intergenic 35.0%
GTCAAGTTATCGTATCATGA+TGG + chr2.2:54727316-54727335 MS.gene070227:intron 35.0%
GTCACATTATGTGATGACAT+TGG + chr2.2:54727865-54727884 MS.gene070227:intron 35.0%
GTTAAAACCTTCAGTACTCT+TGG - chr2.2:54726063-54726082 None:intergenic 35.0%
TAAGAACCTCATCAACACTT+TGG + chr2.2:54725252-54725271 MS.gene070227:CDS 35.0%
TAGAAACTTCAACTTATGGC+AGG + chr2.2:54726902-54726921 MS.gene070227:CDS 35.0%
TAGCATCAACATCATTTCTC+TGG - chr2.2:54726417-54726436 None:intergenic 35.0%
TCAATAAATACTCGGCTTCA+AGG + chr2.2:54726762-54726781 MS.gene070227:intron 35.0%
TCTCTATCATGACCATCAAA+CGG - chr2.2:54727186-54727205 None:intergenic 35.0%
TGTGAATGAAGGAATTGAAG+CGG + chr2.2:54725581-54725600 MS.gene070227:CDS 35.0%
TTGAATTGTGAATACGAACC+AGG - chr2.2:54727133-54727152 None:intergenic 35.0%
! ATTTTATCATAGGGGCAAAC+TGG - chr2.2:54726236-54726255 None:intergenic 35.0%
! CTTTTCATATTGATCAGGAG+AGG + chr2.2:54726351-54726370 MS.gene070227:intron 35.0%
! GAAATGTGTTGTTCATCAGA+AGG + chr2.2:54725228-54725247 MS.gene070227:CDS 35.0%
! GATGATGATGATGAAATGGA+AGG - chr2.2:54725283-54725302 None:intergenic 35.0%
! TTTGATGGTCATGATAGAGA+CGG + chr2.2:54727186-54727205 MS.gene070227:intron 35.0%
!! AAGATTTTAACGAGATAGGC+AGG + chr2.2:54727276-54727295 MS.gene070227:intron 35.0%
!! CAGGTTAGTTTACCTAATGT+TGG + chr2.2:54726825-54726844 MS.gene070227:intron 35.0%
!! CATTTCTTATCCACTTTTGC+TGG - chr2.2:54725214-54725233 None:intergenic 35.0%
AAAGCAAAAGATAGACCTCC+TGG + chr2.2:54727112-54727131 MS.gene070227:CDS 40.0%
AAGAAAGCCTGCCATGTTAA+GGG - chr2.2:54727475-54727494 None:intergenic 40.0%
AATAGCCTTTGCTGCTCAAT+TGG + chr2.2:54727087-54727106 MS.gene070227:CDS 40.0%
AATCCTAAAGGCCAGATCAA+TGG - chr2.2:54727420-54727439 None:intergenic 40.0%
AATTGGGTGAAGCTCATTTG+TGG + chr2.2:54725334-54725353 MS.gene070227:CDS 40.0%
AATTGTGAATACGAACCAGG+AGG - chr2.2:54727130-54727149 None:intergenic 40.0%
ACATCTTATGCTGCCTTAGA+AGG + chr2.2:54725610-54725629 MS.gene070227:CDS 40.0%
ATGTCTCAATCCAGTGTCTA+AGG - chr2.2:54727344-54727363 None:intergenic 40.0%
CAGTTTACTCTGCCTATAGA+AGG - chr2.2:54726620-54726639 None:intergenic 40.0%
CCATCACACGCTTTAATTAG+CGG + chr2.2:54727711-54727730 MS.gene070227:CDS 40.0%
CTCTATCATGACCATCAAAC+GGG - chr2.2:54727185-54727204 None:intergenic 40.0%
CTTAACAGAATTTGATCCCG+AGG + chr2.2:54725933-54725952 MS.gene070227:intron 40.0%
GAGTTAGAAACCAACATGAC+AGG - chr2.2:54727240-54727259 None:intergenic 40.0%
GATAGAGACGGATAGGATAT+GGG + chr2.2:54727198-54727217 MS.gene070227:intron 40.0%
GGAATGAGATTGCATTAGCA+GGG - chr2.2:54725999-54726018 None:intergenic 40.0%
GGCATACATGTTCAGATTGT+TGG + chr2.2:54727886-54727905 MS.gene070227:intron 40.0%
GTGCTTAATTCCAGCAAAAG+TGG + chr2.2:54725201-54725220 MS.gene070227:intron 40.0%
GTTTAAGTAATGCTGTCACG+TGG + chr2.2:54727565-54727584 MS.gene070227:intron 40.0%
TAGAGATCCATACAAGTGCA+AGG + chr2.2:54726437-54726456 MS.gene070227:CDS 40.0%
TCATCCTGAGCATCTCTTAT+TGG + chr2.2:54727963-54727982 MS.gene070227:CDS 40.0%
TGATAGAGACGGATAGGATA+TGG + chr2.2:54727197-54727216 MS.gene070227:intron 40.0%
TGCTAATGCAATCTCATTCC+AGG + chr2.2:54725999-54726018 MS.gene070227:CDS 40.0%
TGGAATGAGATTGCATTAGC+AGG - chr2.2:54726000-54726019 None:intergenic 40.0%
TTAATTAGCGGCATAGCCTA+TGG + chr2.2:54727723-54727742 MS.gene070227:CDS 40.0%
TTTAGCCAATTGAGCAGCAA+AGG - chr2.2:54727095-54727114 None:intergenic 40.0%
TTTCATTCCCTTAACATGGC+AGG + chr2.2:54727465-54727484 MS.gene070227:intron 40.0%
TTTGCGAAGTAGATTTCTCC+TGG - chr2.2:54726020-54726039 None:intergenic 40.0%
! AGTTTGGTTTACACTCTTGC+TGG + chr2.2:54725394-54725413 MS.gene070227:CDS 40.0%
! CATTTGTGGTGCAAGTTTTG+AGG + chr2.2:54725348-54725367 MS.gene070227:CDS 40.0%
! GATGTATCGACACAAGGAAA+TGG - chr2.2:54726598-54726617 None:intergenic 40.0%
! GTGTCGATACATCCTTCTAT+AGG + chr2.2:54726605-54726624 MS.gene070227:intron 40.0%
! TAGAAGGATGTATCGACACA+AGG - chr2.2:54726604-54726623 None:intergenic 40.0%
!! AGCATCTCTTATTGGCTCTA+AGG + chr2.2:54727971-54727990 MS.gene070227:CDS 40.0%
!! CTTCAGTACTCTTGGTGTTT+CGG - chr2.2:54726055-54726074 None:intergenic 40.0%
!! GCATCTCTTATTGGCTCTAA+GGG + chr2.2:54727972-54727991 MS.gene070227:CDS 40.0%
AGAGCCAATAAGAGATGCTC+AGG - chr2.2:54727970-54727989 None:intergenic 45.0%
AGATCCATGCAATCCCAACA+TGG + chr2.2:54727919-54727938 MS.gene070227:CDS 45.0%
AGGGAAGCTCTTGCTTTGAT+TGG + chr2.2:54727991-54728010 MS.gene070227:CDS 45.0%
AGTCTCTCCAGAGAGGTAAT+TGG + chr2.2:54725317-54725336 MS.gene070227:CDS 45.0%
ATGAGTGGAGATATTGGGAG+AGG + chr2.2:54727049-54727068 MS.gene070227:CDS 45.0%
CAATATCTCCACTCATCGGA+CGG - chr2.2:54727045-54727064 None:intergenic 45.0%
CAGGATGAGAGAGACATGAT+AGG - chr2.2:54727396-54727415 None:intergenic 45.0%
CCGCTAATTAAAGCGTGTGA+TGG - chr2.2:54727714-54727733 None:intergenic 45.0%
CTATCATGTCTCTCTCATCC+TGG + chr2.2:54727394-54727413 MS.gene070227:intron 45.0%
CTCCCAATATCTCCACTCAT+CGG - chr2.2:54727049-54727068 None:intergenic 45.0%
GAAGAAAGCCTGCCATGTTA+AGG - chr2.2:54727476-54727495 None:intergenic 45.0%
GAAGAACTATGGCGTGCTTT+AGG + chr2.2:54726643-54726662 MS.gene070227:CDS 45.0%
GATCTTCACTTTCGCAAAGC+CGG + chr2.2:54725666-54725685 MS.gene070227:CDS 45.0%
GCAGGATATGATACGTGACA+TGG + chr2.2:54727294-54727313 MS.gene070227:intron 45.0%
GTCCGATGAGTGGAGATATT+GGG + chr2.2:54727044-54727063 MS.gene070227:CDS 45.0%
GTCTCTCCAGAGAGGTAATT+GGG + chr2.2:54725318-54725337 MS.gene070227:CDS 45.0%
TATTGGGAGAGGAGCAACTA+AGG + chr2.2:54727060-54727079 MS.gene070227:CDS 45.0%
TCATAACCCAAGGCCTTCTA+AGG - chr2.2:54725626-54725645 None:intergenic 45.0%
TCTTCACAAGACCCGTTTGA+TGG + chr2.2:54727171-54727190 MS.gene070227:intron 45.0%
TGGTCATGATAGAGACGGAT+AGG + chr2.2:54727191-54727210 MS.gene070227:intron 45.0%
TTCTAACTCAGCCTCAACTC+AGG + chr2.2:54727251-54727270 MS.gene070227:intron 45.0%
TTGGTTTACACTCTTGCTGG+AGG + chr2.2:54725397-54725416 MS.gene070227:CDS 45.0%
! CAGGGCAAACATTTTCGCAA+GGG - chr2.2:54725981-54726000 None:intergenic 45.0%
! GTTGTGAGTGCTGTGAATGA+AGG + chr2.2:54725570-54725589 MS.gene070227:CDS 45.0%
!! CGAAACACCAAGAGTACTGA+AGG + chr2.2:54726053-54726072 MS.gene070227:CDS 45.0%
!! GAAGCTCCAAAGTGTTGATG+AGG - chr2.2:54725261-54725280 None:intergenic 45.0%
!! TTGGCACTGATCATAACCCA+AGG - chr2.2:54725636-54725655 None:intergenic 45.0%
ATGCTGCCTTAGAAGGCCTT+GGG + chr2.2:54725617-54725636 MS.gene070227:CDS 50.0%
ATTAGCGGCATAGCCTATGG+TGG + chr2.2:54727726-54727745 MS.gene070227:CDS 50.0%
CATGATGGCTCCTTAGACAC+TGG + chr2.2:54727331-54727350 MS.gene070227:intron 50.0%
CGTCCGATGAGTGGAGATAT+TGG + chr2.2:54727043-54727062 MS.gene070227:CDS 50.0%
GCAGGCTTTCTTCAACTTGC+TGG + chr2.2:54727483-54727502 MS.gene070227:intron 50.0%
GCTTCACCCAATTACCTCTC+TGG - chr2.2:54725327-54725346 None:intergenic 50.0%
TAAAGGCCAGATCAATGGCC+AGG - chr2.2:54727415-54727434 None:intergenic 50.0%
TATGCTGCCTTAGAAGGCCT+TGG + chr2.2:54725616-54725635 MS.gene070227:CDS 50.0%
TCCACCATGTTGGGATTGCA+TGG - chr2.2:54727926-54727945 None:intergenic 50.0%
TCCATGCAATCCCAACATGG+TGG + chr2.2:54727922-54727941 MS.gene070227:CDS 50.0%
TCTCATCCTGGCCATTGATC+TGG + chr2.2:54727406-54727425 MS.gene070227:intron 50.0%
TGAAGCAGCTCCACCATGTT+GGG - chr2.2:54727935-54727954 None:intergenic 50.0%
TTGAAGCAGCTCCACCATGT+TGG - chr2.2:54727936-54727955 None:intergenic 50.0%
TTGAAGCTAGTCGCCGTAAG+TGG + chr2.2:54726682-54726701 MS.gene070227:intron 50.0%
! GCAGGGCAAACATTTTCGCA+AGG - chr2.2:54725982-54726001 None:intergenic 50.0%
! TGGCCATTGATCTGGCCTTT+AGG + chr2.2:54727414-54727433 MS.gene070227:intron 50.0%
!! GAGGTTGAAGGCACCACTTA+CGG - chr2.2:54726698-54726717 None:intergenic 50.0%
!! GGCTTTCTTCAACTTGCTGG+TGG + chr2.2:54727486-54727505 MS.gene070227:intron 50.0%
ACAGTCCGATGGACAGTCCT+CGG - chr2.2:54725953-54725972 None:intergenic 55.0%
CATGCAGGACGGAGTCATGA+CGG + chr2.2:54726181-54726200 MS.gene070227:intron 55.0%
CCACTTGAGTCTCTCCAGAG+AGG + chr2.2:54725310-54725329 MS.gene070227:CDS 55.0%
TGATCCCGAGGACTGTCCAT+CGG + chr2.2:54725945-54725964 MS.gene070227:CDS 55.0%
! CCTCTCTGGAGAGACTCAAG+TGG - chr2.2:54725313-54725332 None:intergenic 55.0%
CAGTCCGATGGACAGTCCTC+GGG - chr2.2:54725952-54725971 None:intergenic 60.0%
CTATGGTGGCTACGCGCGAA+AGG + chr2.2:54727740-54727759 MS.gene070227:CDS 60.0%
CTTTCGCGCGTAGCCACCAT+AGG - chr2.2:54727742-54727761 None:intergenic 60.0%
TTAGACGGCCGTCCGATGAG+TGG + chr2.2:54727034-54727053 MS.gene070227:CDS 60.0%
! CAAGGGCGTGAACAGTCCGA+TGG - chr2.2:54725964-54725983 None:intergenic 60.0%
!! GTCATGACGGAGCGCTGCTA+TGG + chr2.2:54726194-54726213 MS.gene070227:CDS 60.0%
!! ACGGAGCGCTGCTATGGCTG+TGG + chr2.2:54726200-54726219 MS.gene070227:CDS 65.0%


Chromosome Type Strat End Strand Name
chr2.2 gene 54725073 54728032 54725073 ID=MS.gene070227
chr2.2 mRNA 54725073 54728032 54725073 ID=MS.gene070227.t1;Parent=MS.gene070227
chr2.2 exon 54725073 54725130 54725073 ID=MS.gene070227.t1.exon1;Parent=MS.gene070227.t1
chr2.2 CDS 54725073 54725130 54725073 ID=cds.MS.gene070227.t1;Parent=MS.gene070227.t1
chr2.2 exon 54725215 54725418 54725215 ID=MS.gene070227.t1.exon2;Parent=MS.gene070227.t1
chr2.2 CDS 54725215 54725418 54725215 ID=cds.MS.gene070227.t1;Parent=MS.gene070227.t1
chr2.2 exon 54725538 54725687 54725538 ID=MS.gene070227.t1.exon3;Parent=MS.gene070227.t1
chr2.2 CDS 54725538 54725687 54725538 ID=cds.MS.gene070227.t1;Parent=MS.gene070227.t1
chr2.2 exon 54725941 54726074 54725941 ID=MS.gene070227.t1.exon4;Parent=MS.gene070227.t1
chr2.2 CDS 54725941 54726074 54725941 ID=cds.MS.gene070227.t1;Parent=MS.gene070227.t1
chr2.2 exon 54726188 54726257 54726188 ID=MS.gene070227.t1.exon5;Parent=MS.gene070227.t1
chr2.2 CDS 54726188 54726257 54726188 ID=cds.MS.gene070227.t1;Parent=MS.gene070227.t1
chr2.2 exon 54726368 54726458 54726368 ID=MS.gene070227.t1.exon6;Parent=MS.gene070227.t1
chr2.2 CDS 54726368 54726458 54726368 ID=cds.MS.gene070227.t1;Parent=MS.gene070227.t1
chr2.2 exon 54726627 54726696 54726627 ID=MS.gene070227.t1.exon7;Parent=MS.gene070227.t1
chr2.2 CDS 54726627 54726696 54726627 ID=cds.MS.gene070227.t1;Parent=MS.gene070227.t1
chr2.2 exon 54726828 54726923 54726828 ID=MS.gene070227.t1.exon8;Parent=MS.gene070227.t1
chr2.2 CDS 54726828 54726923 54726828 ID=cds.MS.gene070227.t1;Parent=MS.gene070227.t1
chr2.2 exon 54727034 54727133 54727034 ID=MS.gene070227.t1.exon9;Parent=MS.gene070227.t1
chr2.2 CDS 54727034 54727133 54727034 ID=cds.MS.gene070227.t1;Parent=MS.gene070227.t1
chr2.2 exon 54727487 54727570 54727487 ID=MS.gene070227.t1.exon10;Parent=MS.gene070227.t1
chr2.2 CDS 54727487 54727570 54727487 ID=cds.MS.gene070227.t1;Parent=MS.gene070227.t1
chr2.2 exon 54727670 54727761 54727670 ID=MS.gene070227.t1.exon11;Parent=MS.gene070227.t1
chr2.2 CDS 54727670 54727761 54727670 ID=cds.MS.gene070227.t1;Parent=MS.gene070227.t1
chr2.2 exon 54727901 54728032 54727901 ID=MS.gene070227.t1.exon12;Parent=MS.gene070227.t1
chr2.2 CDS 54727901 54728032 54727901 ID=cds.MS.gene070227.t1;Parent=MS.gene070227.t1
Gene Sequence

>MS.gene070227

ATGGCTGGTCTGAGATTTTTCTGCGCCACAAATATCTCTGTTTCAACAAAACACAACGGTTCTTCTAAAACTCTTTTTTACACTCTCTATATCTATCTATATGTATCTAACATACTTATGAAATGAATGTGCTTAATTCCAGCAAAAGTGGATAAGAAATGTGTTGTTCATCAGAAGGTTAAGAACCTCATCAACACTTTGGAGCTTCCTTCCATTTCATCATCATCATCATCAACTCCACTTGAGTCTCTCCAGAGAGGTAATTGGGTGAAGCTCATTTGTGGTGCAAGTTTTGAGGATGTTGTTGATATCAAAAATCTCAGTTTGGTTTACACTCTTGCTGGAGGTGATTAATAACATTAATAAGCTTTTCTAATATTTATATGATAAACACTTATATAACTATACTTAATTACATTGTTTAACCAAGCAAATTCAAGAATTGGATTATGTGGTTGATTGCAGTTGACTGCATTGACTGTGCTGCTGATGCATCTGTTGTGAGTGCTGTGAATGAAGGAATTGAAGCGGCAAGAGACATCTTATGCTGCCTTAGAAGGCCTTGGGTTATGATCAGTGCCAATGATGATAAAGATCTTCACTTTCGCAAAGCCGGTAAGACAGTTCTTATTCAACTTAATTGTTCCATACATCAAAAATCTTATCGCACATTTCTACATTTAAAACTTTTGGAAGGCAATGATATTTGCATTGAATCTTCATTTACAGTAACTTTATACATGTAAGCAAAACATAGTGTCATATGAATATCATGTAGCTTGTTTATATACATAATTTAATAAAATATAAACTTTAATCTATGCTTACTGGTAATCACTCAATGTTGTTAGTAAATCCTTCTTAACAGAATTTGATCCCGAGGACTGTCCATCGGACTGTTCACGCCCTTGCGAAAATGTTTGCCCTGCTAATGCAATCTCATTCCAGGAGAAATCTACTTCGCAAACTTCATGTAACACCGAAACACCAAGAGTACTGAAGGTTTTAACTTAATTTTACTCAAAATATCAAAGTTTGTGTGTTATTCTGATAAACATAAAAGTTGTCTTTTTAAAATATAAAACTTGTAATGTTGAATTGGATTTAACATGCAGGACGGAGTCATGACGGAGCGCTGCTATGGCTGTGGTCGCTGTCTTCCAGTTTGCCCCTATGATAAAATAAGTAGGATATTTTCCAGTTCCATCTGATATTATAAATTCTTAGTTTTCCCTTAATTATTTTTGTGTAATATCATTGAATTTTCAACGATATATACTTTTCATATTGATCAGGAGAGGTAACATATGTAAGAGATGCTGTTACAACTTCTGATCTCATCCAGAGAAATGATGTTGATGCTATAGAGATCCATACAAGTGCAAGGTAATATTAGTGTTCCTGAAATACTAGAATATAACTGCAATTACTATGAAAATGCATTTCATGATTGCGATTCACAAAGTTTTATTAATCAAGTAATTAATGTTATTTCCATGATCTTTGATTGATTTTTCGAAATCCATTTCCTTGTGTCGATACATCCTTCTATAGGCAGAGTAAACTGTTTGAAGAACTATGGCGTGCTTTAGGAGATTCAGTAGAAAATTTGAAGCTAGTCGCCGTAAGTGGTGCCTTCAACCTCTTCTAATATTTGAGGGGTTAATTATAATATATAAGTATCACTTTTCAATAAATACTCGGCTTCAAGGCTATTTTCATTTGATTCAACAATTTACTATTAAAATGATCCAGGTTAGTTTACCTAATGTTGGAGATTCAACAATATCTTCTATGAACAAAATGTTCTCTATTATGAAACCAAATCTTAGAAACTTCAACTTATGGCAGGTGTGCCATTTCTCTCTTTTCAACAGATTGATCAATTTTATATTCTTTTAAGCCAAATTCTATTCCATGTTTATTTTAACAAACCCATCTTTGCCATGTATAAACTAAAGTTAGACGGCCGTCCGATGAGTGGAGATATTGGGAGAGGAGCAACTAAGGAGTCAATAGCCTTTGCTGCTCAATTGGCTAAAGCAAAAGATAGACCTCCTGGTTCGTATTCACAATTCAATCAACAGTACTTTGAAAATCTTCACAAGACCCGTTTGATGGTCATGATAGAGACGGATAGGATATGGGCATGATAAGATCTTATCCTGTCATGTTGGTTTCTAACTCAGCCTCAACTCAGGATAAGATTTTAACGAGATAGGCAGGATATGATACGTGACATGGTCAAGTTATCGTATCATGATGGCTCCTTAGACACTGGATTGAGACATGATATGAATCTATGATGGTTTAACTTTATCCTATCATGTCTCTCTCATCCTGGCCATTGATCTGGCCTTTAGGATTTATATCTATCATGATTCGACTAATGTTTCATTCCCTTAACATGGCAGGCTTTCTTCAACTTGCTGGTGGAACTAATGCTCACACAATTGAAGGATTGAAAAAAGAAGGACTCTTTCAAACAACTAGTTTAAGTAATGCTGTCACGTGGTTACTTGATACTTTGTAAAGTATCTTGATACTTTCTCTTTTCTATTCTCACTTGCATTATAAGCATTCTTGTTTGTTTCCAGAATACTTGGATCATGAAAATTCAACAGTCAGTACATCTAATCCATCACACGCTTTAATTAGCGGCATAGCCTATGGTGGCTACGCGCGAAAGGTAACACAACTACTTTTGTATGTCTGATTATTCATTTTCCATTCTGTTTCTGTTCTAAATTTTCTGTGGTTAGATAAAGTAATAGATTTCAGTCACAACTAGAGTCACATTATGTGATGACATTGGCATACATGTTCAGATTGTTGGTAGAGTATTGAGATCCATGCAATCCCAACATGGTGGAGCTGCTTCAATTGAAGATCATCCTGAGCATCTCTTATTGGCTCTAAGGGAAGCTCTTGCTTTGATTGGACCTGTTAAATGTCAATAA

Protein sequence

>MS.gene070227.t1

MAGLRFFCATNISVSTKHNAKVDKKCVVHQKVKNLINTLELPSISSSSSSTPLESLQRGNWVKLICGASFEDVVDIKNLSLVYTLAGVDCIDCAADASVVSAVNEGIEAARDILCCLRRPWVMISANDDKDLHFRKAEFDPEDCPSDCSRPCENVCPANAISFQEKSTSQTSCNTETPRVLKDGVMTERCYGCGRCLPVCPYDKIREVTYVRDAVTTSDLIQRNDVDAIEIHTSARQSKLFEELWRALGDSVENLKLVAVSLPNVGDSTISSMNKMFSIMKPNLRNFNLWQLDGRPMSGDIGRGATKESIAFAAQLAKAKDRPPGFLQLAGGTNAHTIEGLKKEGLFQTTSLKYLDHENSTVSTSNPSHALISGIAYGGYARKIVGRVLRSMQSQHGGAASIEDHPEHLLLALREALALIGPVKCQ