Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene07067.t1 | XP_003625986.1 | 82.2 | 332 | 11 | 1 | 1 | 284 | 444 | 775 | 4.10E-112 | 414.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene07067.t1 | O22907 | 63.0 | 276 | 42 | 5 | 1 | 226 | 441 | 706 | 4.9e-66 | 252.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene07067.t1 | G7KTM4 | 82.2 | 332 | 11 | 1 | 1 | 284 | 444 | 775 | 2.9e-112 | 414.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049283 | MS.gene07067 | 0.831467 | 1.64E-55 | -1.69E-46 |
| MS.gene049368 | MS.gene07067 | 0.807133 | 5.86E-50 | -1.69E-46 |
| MS.gene049983 | MS.gene07067 | 0.848937 | 4.46E-60 | -1.69E-46 |
| MS.gene050386 | MS.gene07067 | 0.804085 | 2.56E-49 | -1.69E-46 |
| MS.gene050414 | MS.gene07067 | 0.826767 | 2.26E-54 | -1.69E-46 |
| MS.gene050571 | MS.gene07067 | 0.825342 | 4.94E-54 | -1.69E-46 |
| MS.gene050646 | MS.gene07067 | 0.848176 | 7.24E-60 | -1.69E-46 |
| MS.gene050654 | MS.gene07067 | 0.849641 | 2.84E-60 | -1.69E-46 |
| MS.gene050945 | MS.gene07067 | 0.82506 | 5.76E-54 | -1.69E-46 |
| MS.gene051003 | MS.gene07067 | 0.816325 | 5.86E-52 | -1.69E-46 |
| MS.gene051043 | MS.gene07067 | 0.804529 | 2.07E-49 | -1.69E-46 |
| MS.gene051234 | MS.gene07067 | 0.821359 | 4.21E-53 | -1.69E-46 |
| MS.gene051343 | MS.gene07067 | 0.820512 | 6.60E-53 | -1.69E-46 |
| MS.gene051363 | MS.gene07067 | 0.838705 | 2.45E-57 | -1.69E-46 |
| MS.gene051365 | MS.gene07067 | 0.831033 | 2.10E-55 | -1.69E-46 |
| MS.gene051597 | MS.gene07067 | 0.809147 | 2.18E-50 | -1.69E-46 |
| MS.gene051856 | MS.gene07067 | 0.804989 | 1.66E-49 | -1.69E-46 |
| MS.gene051902 | MS.gene07067 | 0.814521 | 1.48E-51 | -1.69E-46 |
| MS.gene051975 | MS.gene07067 | 0.803522 | 3.35E-49 | -1.69E-46 |
| MS.gene052072 | MS.gene07067 | 0.803258 | 3.80E-49 | -1.69E-46 |
| MS.gene052342 | MS.gene07067 | 0.819862 | 9.29E-53 | -1.69E-46 |
| MS.gene053058 | MS.gene07067 | 0.85024 | 1.93E-60 | -1.69E-46 |
| MS.gene053079 | MS.gene07067 | 0.801794 | 7.61E-49 | -1.69E-46 |
| MS.gene053564 | MS.gene07067 | 0.80381 | 2.92E-49 | -1.69E-46 |
| MS.gene053931 | MS.gene07067 | 0.846972 | 1.55E-59 | -1.69E-46 |
| MS.gene054651 | MS.gene07067 | 0.807353 | 5.27E-50 | -1.69E-46 |
| MS.gene054893 | MS.gene07067 | 0.805714 | 1.17E-49 | -1.69E-46 |
| MS.gene05517 | MS.gene07067 | 0.815854 | 7.47E-52 | -1.69E-46 |
| MS.gene055841 | MS.gene07067 | 0.800392 | 1.47E-48 | -1.69E-46 |
| MS.gene056045 | MS.gene07067 | 0.810141 | 1.34E-50 | -1.69E-46 |
| MS.gene056509 | MS.gene07067 | 0.80028 | 1.55E-48 | -1.69E-46 |
| MS.gene056776 | MS.gene07067 | 0.809461 | 1.87E-50 | -1.69E-46 |
| MS.gene057208 | MS.gene07067 | 0.831406 | 1.70E-55 | -1.69E-46 |
| MS.gene05781 | MS.gene07067 | 0.814675 | 1.37E-51 | -1.69E-46 |
| MS.gene058126 | MS.gene07067 | 0.818048 | 2.40E-52 | -1.69E-46 |
| MS.gene058781 | MS.gene07067 | 0.811618 | 6.40E-51 | -1.69E-46 |
| MS.gene058783 | MS.gene07067 | 0.810272 | 1.25E-50 | -1.69E-46 |
| MS.gene059146 | MS.gene07067 | 0.850722 | 1.41E-60 | -1.69E-46 |
| MS.gene05978 | MS.gene07067 | 0.8071 | 5.96E-50 | -1.69E-46 |
| MS.gene060244 | MS.gene07067 | 0.804316 | 2.29E-49 | -1.69E-46 |
| MS.gene060259 | MS.gene07067 | 0.846553 | 2.02E-59 | -1.69E-46 |
| MS.gene060932 | MS.gene07067 | 0.806235 | 9.08E-50 | -1.69E-46 |
| MS.gene060935 | MS.gene07067 | 0.842863 | 1.99E-58 | -1.69E-46 |
| MS.gene060937 | MS.gene07067 | 0.846305 | 2.36E-59 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene07067.t1 | MTR_7g109720 | 83.434 | 332 | 7 | 1 | 1 | 284 | 444 | 775 | 0.0 | 543 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene07067.t1 | AT2G47330 | 57.958 | 333 | 76 | 7 | 1 | 283 | 441 | 759 | 4.62e-93 | 291 |
| MS.gene07067.t1 | AT3G09620 | 35.000 | 140 | 68 | 6 | 1 | 120 | 612 | 748 | 1.06e-12 | 68.6 |
| MS.gene07067.t1 | AT3G09620 | 35.000 | 140 | 68 | 6 | 1 | 120 | 613 | 749 | 1.08e-12 | 68.6 |
Find 69 sgRNAs with CRISPR-Local
Find 155 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TATTACTGAATCCTTCATTT+TGG | 0.152380 | 7.2:-5905730 | None:intergenic |
| CAACGAAGCTACTCCTAAAT+TGG | 0.189044 | 7.2:-5905691 | None:intergenic |
| TGAGAAATTGCCGTGGCTTC+TGG | 0.210686 | 7.2:+5903881 | MS.gene07067:CDS |
| CAGGAATGATGTCCCAATTT+AGG | 0.287222 | 7.2:+5905678 | MS.gene07067:CDS |
| TTCCGCAGGACGGGAGATTC+AGG | 0.312404 | 7.2:+5905309 | MS.gene07067:intron |
| ATCACCTTGATCAATCATTT+CGG | 0.328986 | 7.2:-5903913 | None:intergenic |
| AATTCCACCAGTCAAAATTC+TGG | 0.335627 | 7.2:+5905875 | MS.gene07067:CDS |
| ACACTAGCTGGCTTTGTATC+TGG | 0.337129 | 7.2:+5905782 | MS.gene07067:CDS |
| TCACCTTGATCAATCATTTC+GGG | 0.344876 | 7.2:-5903912 | None:intergenic |
| AGCACGGTTTGCTGGTGAAT+TGG | 0.382223 | 7.2:+5904255 | MS.gene07067:CDS |
| GGTGTGCGCGGAGTGGATTT+TGG | 0.383444 | 7.2:+5905569 | MS.gene07067:CDS |
| CTGGTGGAATTTACAGTTGA+AGG | 0.392184 | 7.2:-5905863 | None:intergenic |
| GCATCATCTAACGCAGTTCC+AGG | 0.398257 | 7.2:+5905626 | MS.gene07067:CDS |
| GAATGTGTCCACGGAGTTGA+TGG | 0.406543 | 7.2:+5904303 | MS.gene07067:CDS |
| GGATGAAATTGAAGCACAAT+TGG | 0.408212 | 7.2:+5903968 | MS.gene07067:CDS |
| AAGGCGAAGGCCATCGGGTT+GGG | 0.419506 | 7.2:+5906035 | MS.gene07067:CDS |
| AGAAAAGGCAAAGGCAGAGG+TGG | 0.426446 | 7.2:+5905530 | MS.gene07067:CDS |
| GATGGCCTTCGCCTTTCTCT+AGG | 0.430944 | 7.2:-5906027 | None:intergenic |
| GTTCATCGCATTGGAAGAAC+AGG | 0.434588 | 7.2:+5904181 | MS.gene07067:CDS |
| TTTGTATCTGGTGGATCAAT+TGG | 0.445406 | 7.2:+5905794 | MS.gene07067:CDS |
| GCTGTAAATTCTCTGCGAAC+AGG | 0.449877 | 7.2:+5905659 | MS.gene07067:CDS |
| GTTAATAGCTTAGTTGCTGC+TGG | 0.458763 | 7.2:+5904277 | MS.gene07067:CDS |
| CTGGTCAGAACAACACGAAC+AGG | 0.473022 | 7.2:+5905906 | MS.gene07067:CDS |
| AACGAAGCTACTCCTAAATT+GGG | 0.473246 | 7.2:-5905690 | None:intergenic |
| CTGTTCGTGTTGTTCTGACC+AGG | 0.479959 | 7.2:-5905905 | None:intergenic |
| ATTGGAAGAACAGGCCGTGC+TGG | 0.490716 | 7.2:+5904190 | MS.gene07067:CDS |
| GGGAGAAAAGGCAAAGGCAG+AGG | 0.492204 | 7.2:+5905527 | MS.gene07067:CDS |
| CAAAATTCTGGAGTAAATCC+TGG | 0.496585 | 7.2:+5905887 | MS.gene07067:CDS |
| AGAGAAAGGCGAAGGCCATC+GGG | 0.497603 | 7.2:+5906030 | MS.gene07067:CDS |
| TAGAGAAAGGCGAAGGCCAT+CGG | 0.500919 | 7.2:+5906029 | MS.gene07067:CDS |
| GTTGATGGATCTTGCTATGA+AGG | 0.502001 | 7.2:+5904318 | MS.gene07067:CDS |
| AATAAGAGACCAACACTAGC+TGG | 0.504667 | 7.2:+5905770 | MS.gene07067:CDS |
| AAAGGCAAAGGCAGAGGTGG+GGG | 0.509419 | 7.2:+5905533 | MS.gene07067:CDS |
| GAATTTACAGTTGAAGGAGC+AGG | 0.516910 | 7.2:-5905857 | None:intergenic |
| GAAAAGGCAAAGGCAGAGGT+GGG | 0.521254 | 7.2:+5905531 | MS.gene07067:CDS |
| GACATGCATGTTCATCGCAT+TGG | 0.527240 | 7.2:+5904172 | MS.gene07067:CDS |
| TCAAAACGAGATGCAAGAAA+AGG | 0.529472 | 7.2:+5905332 | MS.gene07067:CDS |
| ATTGATCCTTATCACCATGC+AGG | 0.531053 | 7.2:-5904016 | None:intergenic |
| GATGAAATTGAAGCACAATT+GGG | 0.543605 | 7.2:+5903969 | MS.gene07067:CDS |
| TCATCAACCTCCCAAAATGA+AGG | 0.545123 | 7.2:+5905719 | MS.gene07067:CDS |
| GTATCTGGTGGATCAATTGG+CGG | 0.547924 | 7.2:+5905797 | MS.gene07067:CDS |
| TTACCCGAAATGATTGATCA+AGG | 0.552029 | 7.2:+5903909 | MS.gene07067:CDS |
| AACAGGCCGTGCTGGTGACA+AGG | 0.564433 | 7.2:+5904198 | MS.gene07067:CDS |
| AAAGGCGAAGGCCATCGGGT+TGG | 0.565453 | 7.2:+5906034 | MS.gene07067:CDS |
| AAAAGGCAAAGGCAGAGGTG+GGG | 0.567265 | 7.2:+5905532 | MS.gene07067:CDS |
| TGGCAAAGGTGTGCGCGGAG+TGG | 0.570105 | 7.2:+5905562 | MS.gene07067:CDS |
| TTTAAAGTTGCTGCCCTGCA+TGG | 0.578481 | 7.2:+5904002 | MS.gene07067:CDS |
| GGTAATTTCTCCAGAAGCCA+CGG | 0.578486 | 7.2:-5903891 | None:intergenic |
| TGTTGTGTAGGTGGGAGAAA+AGG | 0.593082 | 7.2:+5905515 | MS.gene07067:intron |
| GCAGGTGGCAAAGGTGTGCG+CGG | 0.596293 | 7.2:+5905557 | MS.gene07067:CDS |
| TTTACAGCAGCAGACCGACC+TGG | 0.602830 | 7.2:-5905644 | None:intergenic |
| GCAGTTCTAAACCTAGAGAA+AGG | 0.605177 | 7.2:+5906016 | MS.gene07067:intron |
| ATTCAGTAATAATACAAGCA+TGG | 0.605916 | 7.2:+5905742 | MS.gene07067:CDS |
| GGCCGTGCTGGTGACAAGGA+CGG | 0.606801 | 7.2:+5904202 | MS.gene07067:CDS |
| CTAGCTGGCTTTGTATCTGG+TGG | 0.609199 | 7.2:+5905785 | MS.gene07067:CDS |
| TTGATCCTTATCACCATGCA+GGG | 0.615126 | 7.2:-5904015 | None:intergenic |
| GGCAATTTCTCAGAATCAGA+AGG | 0.617536 | 7.2:-5903870 | None:intergenic |
| CTGATTCTGAGAAATTGCCG+TGG | 0.618831 | 7.2:+5903874 | MS.gene07067:CDS |
| CATCTAACGCAGTTCCAGGT+CGG | 0.632676 | 7.2:+5905630 | MS.gene07067:CDS |
| CTCCGTCCTTGTCACCAGCA+CGG | 0.638268 | 7.2:-5904204 | None:intergenic |
| AAACGAGATGCAAGAAAAGG+AGG | 0.638810 | 7.2:+5905335 | MS.gene07067:CDS |
| GATACAAAGCCAGCTAGTGT+TGG | 0.641121 | 7.2:-5905779 | None:intergenic |
| TGCTGGTCAGAATGTGTCCA+CGG | 0.644595 | 7.2:+5904294 | MS.gene07067:CDS |
| CTAAACCTAGAGAAAGGCGA+AGG | 0.655176 | 7.2:+5906022 | MS.gene07067:CDS |
| TGCTTCAATTTCATCCACAG+TGG | 0.658468 | 7.2:-5903961 | None:intergenic |
| AACTATCTATCCCAACCCGA+TGG | 0.662856 | 7.2:-5906045 | None:intergenic |
| AGCAAGATCCATCAACTCCG+TGG | 0.674249 | 7.2:-5904311 | None:intergenic |
| GAAGCACAATTGGGTCAGAG+AGG | 0.693962 | 7.2:+5903978 | MS.gene07067:CDS |
| GTAGGTGGGAGAAAAGGCAA+AGG | 0.721472 | 7.2:+5905521 | MS.gene07067:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTATATATTAATGTATTCAA+TGG | + | chr7.2:5904547-5904566 | MS.gene07067:intron | 10.0% |
| !! | TAAAGAAGTAAAGATTATTA+GGG | - | chr7.2:5905053-5905072 | None:intergenic | 15.0% |
| !!! | ATTTTACAGAAATTTAAATC+TGG | + | chr7.2:5904053-5904072 | MS.gene07067:intron | 15.0% |
| !!! | TTAGTACATATTTTTTGAAA+TGG | + | chr7.2:5904524-5904543 | MS.gene07067:intron | 15.0% |
| !! | ATAAGATTTAGATATCTCTT+GGG | + | chr7.2:5905251-5905270 | MS.gene07067:intron | 20.0% |
| !! | ATGAAGAAAAAATACTGTAT+AGG | - | chr7.2:5904353-5904372 | None:intergenic | 20.0% |
| !! | CTAAAGAAGTAAAGATTATT+AGG | - | chr7.2:5905054-5905073 | None:intergenic | 20.0% |
| !! | GATAGAAGTTATATATCTAT+AGG | + | chr7.2:5904615-5904634 | MS.gene07067:intron | 20.0% |
| !! | TATAAGATTTAGATATCTCT+TGG | + | chr7.2:5905250-5905269 | MS.gene07067:intron | 20.0% |
| !! | TATATTAATGTATTCAATGG+TGG | + | chr7.2:5904550-5904569 | MS.gene07067:intron | 20.0% |
| !! | TGAAGAAAAAATACTGTATA+GGG | - | chr7.2:5904352-5904371 | None:intergenic | 20.0% |
| !!! | ATCTATTTGATTGAACATTT+TGG | + | chr7.2:5904798-5904817 | MS.gene07067:intron | 20.0% |
| !!! | TGAACATTTTGGTAAAATTA+TGG | + | chr7.2:5904809-5904828 | MS.gene07067:intron | 20.0% |
| ! | ATTCAGTAATAATACAAGCA+TGG | + | chr7.2:5905742-5905761 | MS.gene07067:CDS | 25.0% |
| ! | CAAAACCAACAATAATCAAA+GGG | - | chr7.2:5904427-5904446 | None:intergenic | 25.0% |
| ! | CTAAAATATATTTGACTGCT+TGG | + | chr7.2:5904856-5904875 | MS.gene07067:intron | 25.0% |
| ! | CTTTGATATTGCTAAAGATA+TGG | + | chr7.2:5904150-5904169 | MS.gene07067:intron | 25.0% |
| ! | GTTTGGATGAGAATAAAATT+AGG | + | chr7.2:5904899-5904918 | MS.gene07067:intron | 25.0% |
| ! | TATAGTCATAACAAGTCAAA+TGG | - | chr7.2:5905104-5905123 | None:intergenic | 25.0% |
| ! | TTATAACTCAAAAAGAAGCA+CGG | + | chr7.2:5904239-5904258 | MS.gene07067:CDS | 25.0% |
| ! | TTGGTAAAATTATGGTAGAA+TGG | + | chr7.2:5904817-5904836 | MS.gene07067:intron | 25.0% |
| !! | ATTACTGAATCCTTCATTTT+GGG | - | chr7.2:5905732-5905751 | None:intergenic | 25.0% |
| !! | GGTCGAACTAATATATTTTT+CGG | - | chr7.2:5905083-5905102 | None:intergenic | 25.0% |
| !! | TATTACTGAATCCTTCATTT+TGG | - | chr7.2:5905733-5905752 | None:intergenic | 25.0% |
| !!! | ATTAGTTTTTGCTTCCAAAA+AGG | + | chr7.2:5903938-5903957 | MS.gene07067:CDS | 25.0% |
| !!! | GCTTTTTTCAAAAGATGAAA+TGG | + | chr7.2:5904696-5904715 | MS.gene07067:intron | 25.0% |
| !!! | TAGAATGGACTTGTTTTTTA+GGG | + | chr7.2:5904832-5904851 | MS.gene07067:intron | 25.0% |
| AAGTAAAGATTATTAGGGAG+AGG | - | chr7.2:5905048-5905067 | None:intergenic | 30.0% | |
| AGCAATATCAAAGTTTACCA+CGG | - | chr7.2:5904143-5904162 | None:intergenic | 30.0% | |
| ATATCTATAGGTTTGACTGT+TGG | + | chr7.2:5904627-5904646 | MS.gene07067:intron | 30.0% | |
| ATCACCTTGATCAATCATTT+CGG | - | chr7.2:5903916-5903935 | None:intergenic | 30.0% | |
| CCAAAACCAACAATAATCAA+AGG | - | chr7.2:5904428-5904447 | None:intergenic | 30.0% | |
| GATGAAATTGAAGCACAATT+GGG | + | chr7.2:5903969-5903988 | MS.gene07067:CDS | 30.0% | |
| GTAATATCAGTATGCTTGAT+TGG | + | chr7.2:5905467-5905486 | MS.gene07067:intron | 30.0% | |
| TTACATTTCTTGTGTTGTGT+AGG | + | chr7.2:5905503-5905522 | MS.gene07067:intron | 30.0% | |
| ! | TTTTGCCTGTAAATAGCATA+GGG | - | chr7.2:5904491-5904510 | None:intergenic | 30.0% |
| ! | TTTTTGCCTGTAAATAGCAT+AGG | - | chr7.2:5904492-5904511 | None:intergenic | 30.0% |
| !! | ATTTACTCCAGAATTTTGAC+TGG | - | chr7.2:5905885-5905904 | None:intergenic | 30.0% |
| !!! | CCTTTGATTATTGTTGGTTT+TGG | + | chr7.2:5904425-5904444 | MS.gene07067:intron | 30.0% |
| !!! | GTAGAATGGACTTGTTTTTT+AGG | + | chr7.2:5904831-5904850 | MS.gene07067:intron | 30.0% |
| AAATAGCATAGGGGGATAAA+TGG | - | chr7.2:5904481-5904500 | None:intergenic | 35.0% | |
| AACGAAGCTACTCCTAAATT+GGG | - | chr7.2:5905693-5905712 | None:intergenic | 35.0% | |
| AATAGCATAGGGGGATAAAT+GGG | - | chr7.2:5904480-5904499 | None:intergenic | 35.0% | |
| AATTCCACCAGTCAAAATTC+TGG | + | chr7.2:5905875-5905894 | MS.gene07067:CDS | 35.0% | |
| ATTTCTTGTGTTGTGTAGGT+GGG | + | chr7.2:5905507-5905526 | MS.gene07067:intron | 35.0% | |
| CATCAAGTCAATTAAAACCG+TGG | + | chr7.2:5904123-5904142 | MS.gene07067:intron | 35.0% | |
| CGTATCCCTTTGATTATTGT+TGG | + | chr7.2:5904419-5904438 | MS.gene07067:intron | 35.0% | |
| CGTCACAATTCATATGTCAT+TGG | + | chr7.2:5905189-5905208 | MS.gene07067:intron | 35.0% | |
| GGATGAAATTGAAGCACAAT+TGG | + | chr7.2:5903968-5903987 | MS.gene07067:CDS | 35.0% | |
| TAAGGATCAATCTTCTCGTA+TGG | + | chr7.2:5904028-5904047 | MS.gene07067:intron | 35.0% | |
| TCAAAACGAGATGCAAGAAA+AGG | + | chr7.2:5905332-5905351 | MS.gene07067:CDS | 35.0% | |
| TCACCTTGATCAATCATTTC+GGG | - | chr7.2:5903915-5903934 | None:intergenic | 35.0% | |
| TTACCCGAAATGATTGATCA+AGG | + | chr7.2:5903909-5903928 | MS.gene07067:CDS | 35.0% | |
| TTTGCCTGTAAATAGCATAG+GGG | - | chr7.2:5904490-5904509 | None:intergenic | 35.0% | |
| ! | ATTTTGTCTTCTAATTCCGC+AGG | + | chr7.2:5905295-5905314 | MS.gene07067:intron | 35.0% |
| ! | TTATTAGGGAGAGGTTTTTG+TGG | - | chr7.2:5905039-5905058 | None:intergenic | 35.0% |
| ! | TTTCTTTAGTGCTGCTACTT+GGG | + | chr7.2:5904999-5905018 | MS.gene07067:intron | 35.0% |
| ! | TTTGTATCTGGTGGATCAAT+TGG | + | chr7.2:5905794-5905813 | MS.gene07067:CDS | 35.0% |
| !! | AAGGTTAGTTTCTAAGAAGC+TGG | + | chr7.2:5904575-5904594 | MS.gene07067:intron | 35.0% |
| !! | AATGTATTCAATGGTGGACA+AGG | + | chr7.2:5904556-5904575 | MS.gene07067:intron | 35.0% |
| !! | CAAAATTCTGGAGTAAATCC+TGG | + | chr7.2:5905887-5905906 | MS.gene07067:CDS | 35.0% |
| !! | TTTTCTTTAGTGCTGCTACT+TGG | + | chr7.2:5904998-5905017 | MS.gene07067:intron | 35.0% |
| AAACGAGATGCAAGAAAAGG+AGG | + | chr7.2:5905335-5905354 | MS.gene07067:CDS | 40.0% | |
| AACAGCTCGATTAAAACCAG+AGG | - | chr7.2:5904960-5904979 | None:intergenic | 40.0% | |
| AATAAGAGACCAACACTAGC+TGG | + | chr7.2:5905770-5905789 | MS.gene07067:CDS | 40.0% | |
| ACAGCTCGATTAAAACCAGA+GGG | - | chr7.2:5904959-5904978 | None:intergenic | 40.0% | |
| ATTGATCCTTATCACCATGC+AGG | - | chr7.2:5904019-5904038 | None:intergenic | 40.0% | |
| ATTTAGTCGTTCAGGAAGAC+AGG | - | chr7.2:5904724-5904743 | None:intergenic | 40.0% | |
| CAACGAAGCTACTCCTAAAT+TGG | - | chr7.2:5905694-5905713 | None:intergenic | 40.0% | |
| CAGGAATGATGTCCCAATTT+AGG | + | chr7.2:5905678-5905697 | MS.gene07067:CDS | 40.0% | |
| CAGTAGCAATAAGCACATGT+AGG | - | chr7.2:5904081-5904100 | None:intergenic | 40.0% | |
| CATTTCTTGTGTTGTGTAGG+TGG | + | chr7.2:5905506-5905525 | MS.gene07067:intron | 40.0% | |
| CGTGCTTACAGGAAATTGTT+TGG | + | chr7.2:5904882-5904901 | MS.gene07067:intron | 40.0% | |
| CTGGTGGAATTTACAGTTGA+AGG | - | chr7.2:5905866-5905885 | None:intergenic | 40.0% | |
| GAATTTACAGTTGAAGGAGC+AGG | - | chr7.2:5905860-5905879 | None:intergenic | 40.0% | |
| GGCAATTTCTCAGAATCAGA+AGG | - | chr7.2:5903873-5903892 | None:intergenic | 40.0% | |
| GTCTTCCTGAACGACTAAAT+GGG | + | chr7.2:5904724-5904743 | MS.gene07067:intron | 40.0% | |
| GTTAATAGCTTAGTTGCTGC+TGG | + | chr7.2:5904277-5904296 | MS.gene07067:CDS | 40.0% | |
| TCATCAACCTCCCAAAATGA+AGG | + | chr7.2:5905719-5905738 | MS.gene07067:CDS | 40.0% | |
| TGCTTCAATTTCATCCACAG+TGG | - | chr7.2:5903964-5903983 | None:intergenic | 40.0% | |
| TGTCTTCCTGAACGACTAAA+TGG | + | chr7.2:5904723-5904742 | MS.gene07067:intron | 40.0% | |
| TTGATCCTTATCACCATGCA+GGG | - | chr7.2:5904018-5904037 | None:intergenic | 40.0% | |
| TTGCCTGTAAATAGCATAGG+GGG | - | chr7.2:5904489-5904508 | None:intergenic | 40.0% | |
| ! | ACTGAATCCTTCATTTTGGG+AGG | - | chr7.2:5905729-5905748 | None:intergenic | 40.0% |
| ! | CTGACGATGTTTTATGATGC+TGG | + | chr7.2:5905227-5905246 | MS.gene07067:intron | 40.0% |
| ! | GTTGATGGATCTTGCTATGA+AGG | + | chr7.2:5904318-5904337 | MS.gene07067:CDS | 40.0% |
| ! | TATCCCCCTATGCTATTTAC+AGG | + | chr7.2:5904483-5904502 | MS.gene07067:intron | 40.0% |
| !! | GCAGTTCTAAACCTAGAGAA+AGG | + | chr7.2:5906016-5906035 | MS.gene07067:intron | 40.0% |
| !!! | TACTCCAGAATTTTGACTGG+TGG | - | chr7.2:5905882-5905901 | None:intergenic | 40.0% |
| ATTAAAACCAGAGGGGAGAC+AGG | - | chr7.2:5904951-5904970 | None:intergenic | 45.0% | |
| CAGCTCGATTAAAACCAGAG+GGG | - | chr7.2:5904958-5904977 | None:intergenic | 45.0% | |
| CTAAACCTAGAGAAAGGCGA+AGG | + | chr7.2:5906022-5906041 | MS.gene07067:CDS | 45.0% | |
| GACATGCATGTTCATCGCAT+TGG | + | chr7.2:5904172-5904191 | MS.gene07067:CDS | 45.0% | |
| GACTCTACTGTGCAGAGATA+AGG | - | chr7.2:5905447-5905466 | None:intergenic | 45.0% | |
| GAGATAAGGACGCAGCTTAT+TGG | - | chr7.2:5905433-5905452 | None:intergenic | 45.0% | |
| GAGATGCAAGAAAAGGAGGT+AGG | + | chr7.2:5905339-5905358 | MS.gene07067:intron | 45.0% | |
| GATACAAAGCCAGCTAGTGT+TGG | - | chr7.2:5905782-5905801 | None:intergenic | 45.0% | |
| GCTGTAAATTCTCTGCGAAC+AGG | + | chr7.2:5905659-5905678 | MS.gene07067:CDS | 45.0% | |
| GGTAATTTCTCCAGAAGCCA+CGG | - | chr7.2:5903894-5903913 | None:intergenic | 45.0% | |
| GTTCATCGCATTGGAAGAAC+AGG | + | chr7.2:5904181-5904200 | MS.gene07067:CDS | 45.0% | |
| TGTCTTCTAATTCCGCAGGA+CGG | + | chr7.2:5905299-5905318 | MS.gene07067:intron | 45.0% | |
| TGTTGTGTAGGTGGGAGAAA+AGG | + | chr7.2:5905515-5905534 | MS.gene07067:intron | 45.0% | |
| ! | CAAAAAGAAGCACGGTTTGC+TGG | + | chr7.2:5904247-5904266 | MS.gene07067:CDS | 45.0% |
| ! | CTGATTCTGAGAAATTGCCG+TGG | + | chr7.2:5903874-5903893 | MS.gene07067:CDS | 45.0% |
| ! | GTATCTGGTGGATCAATTGG+CGG | + | chr7.2:5905797-5905816 | MS.gene07067:CDS | 45.0% |
| ! | TTCATCCACAGTGGCCTTTT+TGG | - | chr7.2:5903955-5903974 | None:intergenic | 45.0% |
| ! | TTTAAAGTTGCTGCCCTGCA+TGG | + | chr7.2:5904002-5904021 | MS.gene07067:CDS | 45.0% |
| !! | ACACTAGCTGGCTTTGTATC+TGG | + | chr7.2:5905782-5905801 | MS.gene07067:CDS | 45.0% |
| !! | AGCTGTTGACTCTGTCATTC+TGG | + | chr7.2:5904973-5904992 | MS.gene07067:intron | 45.0% |
| AAAAGGCAAAGGCAGAGGTG+GGG | + | chr7.2:5905532-5905551 | MS.gene07067:CDS | 50.0% | |
| AATAAGTCCTGTCTCCCCTC+TGG | + | chr7.2:5904941-5904960 | MS.gene07067:intron | 50.0% | |
| AGAAAAGGCAAAGGCAGAGG+TGG | + | chr7.2:5905530-5905549 | MS.gene07067:CDS | 50.0% | |
| AGCAAGATCCATCAACTCCG+TGG | - | chr7.2:5904314-5904333 | None:intergenic | 50.0% | |
| CACAGCCCATTTAGTCGTTC+AGG | - | chr7.2:5904732-5904751 | None:intergenic | 50.0% | |
| CATCTAACGCAGTTCCAGGT+CGG | + | chr7.2:5905630-5905649 | MS.gene07067:CDS | 50.0% | |
| CTGCTTGGTTTCGTGCTTAC+AGG | + | chr7.2:5904871-5904890 | MS.gene07067:intron | 50.0% | |
| CTGGTCAGAACAACACGAAC+AGG | + | chr7.2:5905906-5905925 | MS.gene07067:CDS | 50.0% | |
| CTTGATGTCAAGACCACGAG+CGG | - | chr7.2:5904110-5904129 | None:intergenic | 50.0% | |
| GAAAAGGCAAAGGCAGAGGT+GGG | + | chr7.2:5905531-5905550 | MS.gene07067:CDS | 50.0% | |
| GAAGCACAATTGGGTCAGAG+AGG | + | chr7.2:5903978-5903997 | MS.gene07067:CDS | 50.0% | |
| GAATGTGTCCACGGAGTTGA+TGG | + | chr7.2:5904303-5904322 | MS.gene07067:CDS | 50.0% | |
| GCATCATCTAACGCAGTTCC+AGG | + | chr7.2:5905626-5905645 | MS.gene07067:CDS | 50.0% | |
| GTAGGTGGGAGAAAAGGCAA+AGG | + | chr7.2:5905521-5905540 | MS.gene07067:intron | 50.0% | |
| GTCTTCTAATTCCGCAGGAC+GGG | + | chr7.2:5905300-5905319 | MS.gene07067:intron | 50.0% | |
| TAGAGAAAGGCGAAGGCCAT+CGG | + | chr7.2:5906029-5906048 | MS.gene07067:CDS | 50.0% | |
| TGAGAAATTGCCGTGGCTTC+TGG | + | chr7.2:5903881-5903900 | MS.gene07067:CDS | 50.0% | |
| TGCTGGTCAGAATGTGTCCA+CGG | + | chr7.2:5904294-5904313 | MS.gene07067:CDS | 50.0% | |
| TGCTTCCAAAAAGGCCACTG+TGG | + | chr7.2:5903947-5903966 | MS.gene07067:CDS | 50.0% | |
| ! | CTGTTCGTGTTGTTCTGACC+AGG | - | chr7.2:5905908-5905927 | None:intergenic | 50.0% |
| !! | AGCACGGTTTGCTGGTGAAT+TGG | + | chr7.2:5904255-5904274 | MS.gene07067:CDS | 50.0% |
| !! | CTAGCTGGCTTTGTATCTGG+TGG | + | chr7.2:5905785-5905804 | MS.gene07067:CDS | 50.0% |
| !!! | GTGGATTTTGGCTTGGGCAT+TGG | + | chr7.2:5905581-5905600 | MS.gene07067:CDS | 50.0% |
| AAAGGCAAAGGCAGAGGTGG+GGG | + | chr7.2:5905533-5905552 | MS.gene07067:CDS | 55.0% | |
| AGAGAAAGGCGAAGGCCATC+GGG | + | chr7.2:5906030-5906049 | MS.gene07067:CDS | 55.0% | |
| ATTGGAAGAACAGGCCGTGC+TGG | + | chr7.2:5904190-5904209 | MS.gene07067:CDS | 55.0% | |
| GATGGCCTTCGCCTTTCTCT+AGG | - | chr7.2:5906030-5906049 | None:intergenic | 55.0% | |
| GGGAGAAAAGGCAAAGGCAG+AGG | + | chr7.2:5905527-5905546 | MS.gene07067:CDS | 55.0% | |
| TGCTGCCCTGCATGGTGATA+AGG | + | chr7.2:5904010-5904029 | MS.gene07067:intron | 55.0% | |
| TTTACAGCAGCAGACCGACC+TGG | - | chr7.2:5905647-5905666 | None:intergenic | 55.0% | |
| !!! | CGCGGAGTGGATTTTGGCTT+GGG | + | chr7.2:5905575-5905594 | MS.gene07067:CDS | 55.0% |
| AAAGGCGAAGGCCATCGGGT+TGG | + | chr7.2:5906034-5906053 | MS.gene07067:CDS | 60.0% | |
| AAGGCGAAGGCCATCGGGTT+GGG | + | chr7.2:5906035-5906054 | MS.gene07067:CDS | 60.0% | |
| CTCCGTCCTTGTCACCAGCA+CGG | - | chr7.2:5904207-5904226 | None:intergenic | 60.0% | |
| GACCTGAATCTCCCGTCCTG+CGG | - | chr7.2:5905314-5905333 | None:intergenic | 60.0% | |
| GCTACTGATGTTGCCGCTCG+TGG | + | chr7.2:5904094-5904113 | MS.gene07067:intron | 60.0% | |
| TTCCGCAGGACGGGAGATTC+AGG | + | chr7.2:5905309-5905328 | MS.gene07067:intron | 60.0% | |
| ! | AACAGGCCGTGCTGGTGACA+AGG | + | chr7.2:5904198-5904217 | MS.gene07067:CDS | 60.0% |
| !! | GGTGTGCGCGGAGTGGATTT+TGG | + | chr7.2:5905569-5905588 | MS.gene07067:CDS | 60.0% |
| !!! | GCGCGGAGTGGATTTTGGCT+TGG | + | chr7.2:5905574-5905593 | MS.gene07067:CDS | 60.0% |
| ! | AAAGGCAGAGGTGGGGGTGC+AGG | + | chr7.2:5905539-5905558 | MS.gene07067:CDS | 65.0% |
| ! | GCAGGTGGCAAAGGTGTGCG+CGG | + | chr7.2:5905557-5905576 | MS.gene07067:CDS | 65.0% |
| ! | GGCCGTGCTGGTGACAAGGA+CGG | + | chr7.2:5904202-5904221 | MS.gene07067:CDS | 65.0% |
| ! | TGGCAAAGGTGTGCGCGGAG+TGG | + | chr7.2:5905562-5905581 | MS.gene07067:CDS | 65.0% |
| ! | GGTGGGGGTGCAGGTGGCAA+AGG | + | chr7.2:5905548-5905567 | MS.gene07067:CDS | 70.0% |
| ! | GGCAGAGGTGGGGGTGCAGG+TGG | + | chr7.2:5905542-5905561 | MS.gene07067:CDS | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.2 | gene | 5903831 | 5906065 | 5903831 | ID=MS.gene07067 |
| chr7.2 | mRNA | 5903831 | 5906065 | 5903831 | ID=MS.gene07067.t1;Parent=MS.gene07067 |
| chr7.2 | exon | 5903831 | 5904023 | 5903831 | ID=MS.gene07067.t1.exon1;Parent=MS.gene07067.t1 |
| chr7.2 | CDS | 5903831 | 5904023 | 5903831 | ID=cds.MS.gene07067.t1;Parent=MS.gene07067.t1 |
| chr7.2 | exon | 5904167 | 5904339 | 5904167 | ID=MS.gene07067.t1.exon2;Parent=MS.gene07067.t1 |
| chr7.2 | CDS | 5904167 | 5904339 | 5904167 | ID=cds.MS.gene07067.t1;Parent=MS.gene07067.t1 |
| chr7.2 | exon | 5905317 | 5905356 | 5905317 | ID=MS.gene07067.t1.exon3;Parent=MS.gene07067.t1 |
| chr7.2 | CDS | 5905317 | 5905356 | 5905317 | ID=cds.MS.gene07067.t1;Parent=MS.gene07067.t1 |
| chr7.2 | exon | 5905525 | 5905927 | 5905525 | ID=MS.gene07067.t1.exon4;Parent=MS.gene07067.t1 |
| chr7.2 | CDS | 5905525 | 5905927 | 5905525 | ID=cds.MS.gene07067.t1;Parent=MS.gene07067.t1 |
| chr7.2 | exon | 5906020 | 5906065 | 5906020 | ID=MS.gene07067.t1.exon5;Parent=MS.gene07067.t1 |
| chr7.2 | CDS | 5906020 | 5906065 | 5906020 | ID=cds.MS.gene07067.t1;Parent=MS.gene07067.t1 |
| Gene Sequence |
| Protein sequence |
