Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene070787.t1 | XP_013443370.1 | 91 | 782 | 31 | 4 | 1 | 774 | 1 | 751 | 0.00E+00 | 1123.2 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene070787.t1 | Q9LK27 | 44.2 | 746 | 325 | 16 | 22 | 755 | 33 | 699 | 5.6e-120 | 433.3 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene070787.t1 | A0A072TV39 | 91.0 | 782 | 31 | 4 | 1 | 774 | 1 | 751 | 0.0e+00 | 1123.2 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene049159 | MS.gene070787 | 0.830522 | 2.80E-55 | -1.69E-46 |
MS.gene049190 | MS.gene070787 | 0.814396 | 1.57E-51 | -1.69E-46 |
MS.gene049255 | MS.gene070787 | 0.806321 | 8.71E-50 | -1.69E-46 |
MS.gene049404 | MS.gene070787 | 0.813537 | 2.43E-51 | -1.69E-46 |
MS.gene049672 | MS.gene070787 | 0.806069 | 9.84E-50 | -1.69E-46 |
MS.gene049808 | MS.gene070787 | 0.832922 | 7.17E-56 | -1.69E-46 |
MS.gene049824 | MS.gene070787 | 0.817669 | 2.93E-52 | -1.69E-46 |
MS.gene049825 | MS.gene070787 | 0.80794 | 3.95E-50 | -1.69E-46 |
MS.gene049850 | MS.gene070787 | 0.815467 | 9.11E-52 | -1.69E-46 |
MS.gene049873 | MS.gene070787 | 0.828955 | 6.74E-55 | -1.69E-46 |
MS.gene050559 | MS.gene070787 | 0.826219 | 3.06E-54 | -1.69E-46 |
MS.gene050561 | MS.gene070787 | 0.820913 | 5.34E-53 | -1.69E-46 |
MS.gene050562 | MS.gene070787 | 0.803578 | 3.26E-49 | -1.69E-46 |
MS.gene050689 | MS.gene070787 | 0.846049 | 2.77E-59 | -1.69E-46 |
MS.gene051701 | MS.gene070787 | 0.801425 | 9.06E-49 | -1.69E-46 |
MS.gene051719 | MS.gene070787 | 0.820686 | 6.02E-53 | -1.69E-46 |
MS.gene051720 | MS.gene070787 | 0.819611 | 1.06E-52 | -1.69E-46 |
MS.gene051744 | MS.gene070787 | 0.820463 | 6.77E-53 | -1.69E-46 |
MS.gene052516 | MS.gene070787 | 0.81889 | 1.55E-52 | -1.69E-46 |
MS.gene052519 | MS.gene070787 | 0.820165 | 7.92E-53 | -1.69E-46 |
MS.gene052611 | MS.gene070787 | 0.840762 | 7.15E-58 | -1.69E-46 |
MS.gene052612 | MS.gene070787 | 0.813117 | 3.01E-51 | -1.69E-46 |
MS.gene052863 | MS.gene070787 | 0.822862 | 1.89E-53 | -1.69E-46 |
MS.gene052879 | MS.gene070787 | 0.806404 | 8.36E-50 | -1.69E-46 |
MS.gene053008 | MS.gene070787 | 0.816618 | 5.04E-52 | -1.69E-46 |
MS.gene053079 | MS.gene070787 | 0.801144 | 1.03E-48 | -1.69E-46 |
MS.gene053122 | MS.gene070787 | 0.813974 | 1.95E-51 | -1.69E-46 |
MS.gene053195 | MS.gene070787 | 0.80828 | 3.35E-50 | -1.69E-46 |
MS.gene053226 | MS.gene070787 | 0.843113 | 1.71E-58 | -1.69E-46 |
MS.gene053542 | MS.gene070787 | 0.80636 | 8.54E-50 | -1.69E-46 |
MS.gene05364 | MS.gene070787 | 0.878364 | 2.98E-69 | -1.69E-46 |
MS.gene053931 | MS.gene070787 | 0.81118 | 7.97E-51 | -1.69E-46 |
MS.gene054651 | MS.gene070787 | 0.844319 | 8.14E-59 | -1.69E-46 |
MS.gene055466 | MS.gene070787 | 0.805418 | 1.35E-49 | -1.69E-46 |
MS.gene055512 | MS.gene070787 | 0.824046 | 9.98E-54 | -1.69E-46 |
MS.gene056366 | MS.gene070787 | 0.82023 | 7.66E-53 | -1.69E-46 |
MS.gene056595 | MS.gene070787 | 0.806154 | 9.44E-50 | -1.69E-46 |
MS.gene05686 | MS.gene070787 | 0.811217 | 7.82E-51 | -1.69E-46 |
MS.gene057208 | MS.gene070787 | 0.808199 | 3.48E-50 | -1.69E-46 |
MS.gene057444 | MS.gene070787 | 0.824068 | 9.86E-54 | -1.69E-46 |
MS.gene058008 | MS.gene070787 | 0.817699 | 2.88E-52 | -1.69E-46 |
MS.gene058009 | MS.gene070787 | 0.843516 | 1.34E-58 | -1.69E-46 |
MS.gene058037 | MS.gene070787 | 0.803909 | 2.78E-49 | -1.69E-46 |
MS.gene058625 | MS.gene070787 | 0.843257 | 1.57E-58 | -1.69E-46 |
MS.gene058781 | MS.gene070787 | 0.814081 | 1.85E-51 | -1.69E-46 |
MS.gene058783 | MS.gene070787 | 0.835157 | 1.98E-56 | -1.69E-46 |
MS.gene058979 | MS.gene070787 | 0.829163 | 6.00E-55 | -1.69E-46 |
MS.gene05978 | MS.gene070787 | 0.830458 | 2.90E-55 | -1.69E-46 |
MS.gene059842 | MS.gene070787 | 0.820047 | 8.43E-53 | -1.69E-46 |
MS.gene060194 | MS.gene070787 | 0.813145 | 2.97E-51 | -1.69E-46 |
MS.gene060587 | MS.gene070787 | 0.819269 | 1.27E-52 | -1.69E-46 |
MS.gene060935 | MS.gene070787 | 0.823553 | 1.30E-53 | -1.69E-46 |
MS.gene061176 | MS.gene070787 | 0.811938 | 5.45E-51 | -1.69E-46 |
MS.gene061177 | MS.gene070787 | 0.811236 | 7.75E-51 | -1.69E-46 |
MS.gene061178 | MS.gene070787 | 0.811621 | 6.39E-51 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene070787.t1 | MTR_0018s0090 | 91.944 | 782 | 24 | 4 | 1 | 774 | 1 | 751 | 0.0 | 1291 |
MS.gene070787.t1 | MTR_0018s0090 | 90.447 | 649 | 23 | 4 | 1 | 641 | 1 | 618 | 0.0 | 1070 |
MS.gene070787.t1 | MTR_3g075040 | 46.020 | 804 | 356 | 20 | 1 | 774 | 24 | 779 | 7.10e-166 | 498 |
MS.gene070787.t1 | MTR_3g075040 | 41.486 | 646 | 302 | 18 | 1 | 617 | 24 | 622 | 1.71e-124 | 386 |
MS.gene070787.t1 | MTR_2g091135 | 27.407 | 405 | 252 | 9 | 68 | 432 | 164 | 566 | 1.06e-42 | 165 |
MS.gene070787.t1 | MTR_2g091135 | 27.407 | 405 | 252 | 9 | 68 | 432 | 164 | 566 | 1.31e-42 | 165 |
MS.gene070787.t1 | MTR_2g091130 | 36.531 | 271 | 134 | 7 | 191 | 432 | 294 | 555 | 1.70e-41 | 161 |
MS.gene070787.t1 | MTR_2g018270 | 61.386 | 101 | 39 | 0 | 197 | 297 | 83 | 183 | 4.38e-37 | 146 |
MS.gene070787.t1 | MTR_2g018270 | 41.714 | 175 | 84 | 6 | 589 | 755 | 335 | 499 | 6.45e-21 | 97.4 |
MS.gene070787.t1 | MTR_4g079650 | 41.206 | 199 | 94 | 4 | 191 | 370 | 653 | 847 | 2.20e-35 | 144 |
MS.gene070787.t1 | MTR_4g079650 | 37.768 | 233 | 112 | 7 | 191 | 394 | 653 | 881 | 2.63e-35 | 144 |
MS.gene070787.t1 | MTR_4g079650 | 37.768 | 233 | 112 | 7 | 191 | 394 | 653 | 881 | 3.49e-35 | 144 |
MS.gene070787.t1 | MTR_4g092900 | 31.476 | 359 | 170 | 13 | 194 | 492 | 145 | 487 | 1.01e-33 | 136 |
MS.gene070787.t1 | MTR_4g092900 | 31.476 | 359 | 170 | 13 | 194 | 492 | 145 | 487 | 1.01e-33 | 137 |
MS.gene070787.t1 | MTR_4g092880 | 30.425 | 447 | 217 | 14 | 101 | 492 | 56 | 463 | 1.13e-33 | 136 |
MS.gene070787.t1 | MTR_4g092880 | 54.286 | 105 | 48 | 0 | 194 | 298 | 149 | 253 | 2.94e-31 | 127 |
MS.gene070787.t1 | MTR_8g070660 | 34.872 | 195 | 104 | 5 | 108 | 298 | 26 | 201 | 8.91e-24 | 102 |
MS.gene070787.t1 | MTR_8g070660 | 35.385 | 195 | 103 | 5 | 108 | 298 | 26 | 201 | 1.40e-23 | 103 |
MS.gene070787.t1 | MTR_6g033375 | 26.786 | 224 | 159 | 3 | 193 | 412 | 68 | 290 | 3.28e-21 | 96.3 |
MS.gene070787.t1 | MTR_2g437920 | 43.434 | 99 | 53 | 3 | 208 | 303 | 146 | 244 | 2.75e-16 | 82.0 |
MS.gene070787.t1 | MTR_5g069490 | 29.596 | 223 | 122 | 8 | 206 | 416 | 111 | 310 | 2.21e-15 | 78.6 |
MS.gene070787.t1 | MTR_8g062330 | 40.206 | 97 | 55 | 2 | 199 | 294 | 345 | 439 | 1.29e-12 | 71.2 |
MS.gene070787.t1 | MTR_3g052530 | 37.391 | 115 | 69 | 2 | 200 | 314 | 158 | 269 | 1.69e-12 | 71.6 |
MS.gene070787.t1 | MTR_3g052530 | 37.391 | 115 | 69 | 2 | 200 | 314 | 158 | 269 | 2.19e-12 | 71.2 |
MS.gene070787.t1 | MTR_3g052530 | 37.391 | 115 | 69 | 2 | 200 | 314 | 161 | 272 | 2.33e-12 | 71.2 |
MS.gene070787.t1 | MTR_3g052530 | 40.594 | 101 | 57 | 2 | 200 | 300 | 158 | 255 | 5.63e-12 | 70.1 |
MS.gene070787.t1 | MTR_3g052530 | 40.594 | 101 | 57 | 2 | 200 | 300 | 158 | 255 | 6.46e-12 | 69.7 |
MS.gene070787.t1 | MTR_3g052530 | 40.594 | 101 | 57 | 2 | 200 | 300 | 161 | 258 | 6.64e-12 | 69.7 |
MS.gene070787.t1 | MTR_0662s0020 | 29.386 | 228 | 127 | 9 | 91 | 295 | 23 | 239 | 3.50e-11 | 65.1 |
MS.gene070787.t1 | MTR_5g093070 | 39.423 | 104 | 60 | 2 | 200 | 303 | 207 | 307 | 9.15e-11 | 66.2 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene070787.t1 | AT3G27260 | 44.515 | 784 | 344 | 18 | 8 | 774 | 9 | 718 | 1.44e-176 | 524 |
MS.gene070787.t1 | AT5G14270 | 44.384 | 730 | 316 | 11 | 50 | 774 | 45 | 689 | 3.25e-173 | 514 |
MS.gene070787.t1 | AT5G14270 | 44.384 | 730 | 315 | 11 | 50 | 774 | 45 | 688 | 5.06e-173 | 514 |
MS.gene070787.t1 | AT5G14270 | 44.384 | 730 | 315 | 11 | 50 | 774 | 45 | 688 | 5.06e-173 | 514 |
MS.gene070787.t1 | AT3G27260 | 43.928 | 774 | 343 | 18 | 8 | 764 | 9 | 708 | 1.65e-168 | 506 |
MS.gene070787.t1 | AT3G27260 | 43.423 | 783 | 343 | 19 | 8 | 764 | 9 | 717 | 4.87e-166 | 500 |
MS.gene070787.t1 | AT3G27260 | 44.596 | 731 | 326 | 14 | 41 | 764 | 1 | 659 | 5.24e-166 | 498 |
MS.gene070787.t1 | AT5G63320 | 41.136 | 722 | 343 | 14 | 51 | 749 | 55 | 717 | 1.28e-125 | 402 |
MS.gene070787.t1 | AT5G63320 | 37.946 | 448 | 215 | 8 | 51 | 494 | 55 | 443 | 3.80e-83 | 273 |
MS.gene070787.t1 | AT5G63320 | 37.946 | 448 | 215 | 8 | 51 | 494 | 55 | 443 | 3.80e-83 | 273 |
MS.gene070787.t1 | AT3G01770 | 38.479 | 447 | 200 | 10 | 49 | 494 | 35 | 407 | 4.77e-82 | 271 |
MS.gene070787.t1 | AT3G01770 | 38.479 | 447 | 200 | 10 | 49 | 494 | 35 | 407 | 1.34e-81 | 273 |
MS.gene070787.t1 | AT3G01770 | 55.204 | 221 | 92 | 3 | 555 | 774 | 406 | 620 | 1.01e-54 | 199 |
MS.gene070787.t1 | AT1G06230 | 35.156 | 256 | 139 | 4 | 189 | 419 | 417 | 670 | 1.21e-36 | 148 |
MS.gene070787.t1 | AT1G06230 | 35.156 | 256 | 139 | 4 | 189 | 419 | 417 | 670 | 1.21e-36 | 148 |
MS.gene070787.t1 | AT1G06230 | 35.156 | 256 | 139 | 4 | 189 | 419 | 417 | 670 | 1.21e-36 | 148 |
MS.gene070787.t1 | AT1G06230 | 35.156 | 256 | 139 | 4 | 189 | 419 | 417 | 670 | 1.21e-36 | 148 |
MS.gene070787.t1 | AT1G73150 | 34.328 | 268 | 138 | 8 | 193 | 427 | 119 | 381 | 9.44e-35 | 138 |
MS.gene070787.t1 | AT1G73150 | 34.328 | 268 | 138 | 8 | 193 | 427 | 119 | 381 | 1.05e-34 | 138 |
MS.gene070787.t1 | AT5G46550 | 55.446 | 101 | 45 | 0 | 197 | 297 | 73 | 173 | 1.49e-32 | 132 |
MS.gene070787.t1 | AT5G65630 | 32.099 | 243 | 122 | 5 | 59 | 298 | 72 | 274 | 5.55e-29 | 123 |
MS.gene070787.t1 | AT1G17790 | 50.485 | 103 | 51 | 0 | 193 | 295 | 132 | 234 | 1.10e-28 | 121 |
MS.gene070787.t1 | AT5G10550 | 47.170 | 106 | 56 | 0 | 193 | 298 | 174 | 279 | 2.00e-26 | 115 |
MS.gene070787.t1 | AT2G34900 | 40.952 | 105 | 62 | 0 | 194 | 298 | 1 | 105 | 1.17e-23 | 102 |
MS.gene070787.t1 | AT2G34900 | 41.509 | 106 | 62 | 0 | 193 | 298 | 110 | 215 | 1.54e-23 | 103 |
MS.gene070787.t1 | AT3G52280 | 36.697 | 109 | 66 | 1 | 193 | 298 | 94 | 202 | 5.21e-17 | 84.0 |
MS.gene070787.t1 | AT3G52280 | 36.697 | 109 | 66 | 1 | 193 | 298 | 111 | 219 | 8.33e-17 | 83.6 |
MS.gene070787.t1 | AT5G55040 | 37.736 | 106 | 64 | 1 | 195 | 300 | 189 | 292 | 6.81e-11 | 66.6 |
MS.gene070787.t1 | AT5G55040 | 37.736 | 106 | 64 | 1 | 195 | 300 | 189 | 292 | 6.81e-11 | 66.6 |
Find 175 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CAATGAGAATTCTCAATTTC+TGG | 0.142786 | 7.3:-60792773 | MS.gene070787:CDS |
TTCTCAATTTCTGGAAGATT+TGG | 0.199570 | 7.3:-60792764 | MS.gene070787:CDS |
CCCTCTTCTACATCATTTAC+AGG | 0.202461 | 7.3:+60792559 | None:intergenic |
GCAATTCGATAAAGTTTATC+AGG | 0.210697 | 7.3:+60793362 | None:intergenic |
TCATCGTTGCAAGCATTTAA+AGG | 0.216922 | 7.3:-60799762 | MS.gene070787:intron |
TCTACATCATTTACAGGATT+TGG | 0.229751 | 7.3:+60792565 | None:intergenic |
GTTCAAATTACGAAAGCTTT+TGG | 0.232454 | 7.3:-60800013 | MS.gene070787:CDS |
TGTGTTACTTTGATCAATTC+AGG | 0.241360 | 7.3:-60801128 | MS.gene070787:CDS |
GCACCAGTGCTTATAATTTC+TGG | 0.247066 | 7.3:+60796190 | None:intergenic |
GATGAAGAGGTCAACATTAT+TGG | 0.261522 | 7.3:-60799647 | MS.gene070787:CDS |
TTGAGGAGGAGGGATAATTT+TGG | 0.296813 | 7.3:+60800230 | None:intergenic |
GCAAAATATTGGTAGAGAAT+TGG | 0.307401 | 7.3:-60800160 | MS.gene070787:CDS |
CATAACGCATCCTATGGATT+TGG | 0.321260 | 7.3:-60800550 | MS.gene070787:CDS |
AACAGTGAATTTGCAGTTCC+AGG | 0.325521 | 7.3:+60800684 | None:intergenic |
TGATTTCCTCGAGGTTTCTA+TGG | 0.328466 | 7.3:+60800809 | None:intergenic |
TTCACTGGTGTTTGTCTTCG+TGG | 0.358694 | 7.3:+60800320 | None:intergenic |
TAAGGGTATCAGCCATGATA+TGG | 0.360072 | 7.3:+60800412 | None:intergenic |
AGTTATCCCACCTGCTAAAC+TGG | 0.360870 | 7.3:-60800202 | MS.gene070787:CDS |
CTCAAGCTCCCTCTTTCGTC+TGG | 0.363863 | 7.3:+60792928 | None:intergenic |
ATGGCTAAGAGTAGGCATTC+TGG | 0.364929 | 7.3:-60801239 | MS.gene070787:CDS |
TGTACTGAAGAAGATATTGA+TGG | 0.370764 | 7.3:+60800852 | None:intergenic |
AAAGAAAACAACTTGCCAAT+AGG | 0.373479 | 7.3:-60801043 | MS.gene070787:CDS |
CTGTTGATGAAGCACAAATT+TGG | 0.376302 | 7.3:-60800633 | MS.gene070787:CDS |
GGGATGGGTAGTTTCAAGTT+TGG | 0.383638 | 7.3:-60792667 | MS.gene070787:CDS |
TCGTTTCGAAATATTTACTA+AGG | 0.383833 | 7.3:+60800394 | None:intergenic |
ATGATATGGACATCAGTCTT+AGG | 0.401384 | 7.3:+60800426 | None:intergenic |
GACTTGAACATTTACTCGTT+TGG | 0.402940 | 7.3:+60799534 | None:intergenic |
TTGAAAGAACATAGTTCAAA+TGG | 0.405523 | 7.3:-60800096 | MS.gene070787:CDS |
ATAACGCATCCTATGGATTT+GGG | 0.423894 | 7.3:-60800549 | MS.gene070787:CDS |
TGGGTAGTTTCAAGTTTGGT+GGG | 0.424393 | 7.3:-60792663 | MS.gene070787:CDS |
AAGCTCAGACTTAAACCTAT+TGG | 0.425510 | 7.3:+60801028 | None:intergenic |
CAGGCACGAACTTGTTTGCC+TGG | 0.434968 | 7.3:-60800702 | MS.gene070787:CDS |
ATAACTTGAGGTTGAGGAGG+AGG | 0.435617 | 7.3:+60800219 | None:intergenic |
AATCAAGAGAGGCAAAATAT+TGG | 0.437241 | 7.3:-60800171 | MS.gene070787:CDS |
GACAAAGGAACAAGTTGCAT+TGG | 0.446112 | 7.3:+60801083 | None:intergenic |
TTTCAAATGCAGAAGAGAAA+TGG | 0.448194 | 7.3:-60800978 | MS.gene070787:CDS |
ATGGGTAGTTTCAAGTTTGG+TGG | 0.448417 | 7.3:-60792664 | MS.gene070787:CDS |
CAGTGTCATAACGCATCCTA+TGG | 0.450024 | 7.3:-60800556 | MS.gene070787:CDS |
TGAACGGAAGCAGATATTGA+AGG | 0.454607 | 7.3:+60800891 | None:intergenic |
TTTCAAGAAATCAATGATGT+AGG | 0.454715 | 7.3:+60800113 | None:intergenic |
GTTTAAGTCTGAGCTTGAAC+GGG | 0.456800 | 7.3:-60801021 | MS.gene070787:CDS |
AACGGTGGAGAATCATTTCT+AGG | 0.460214 | 7.3:+60800345 | None:intergenic |
GGTGGTTTGTACATCTTCAC+TGG | 0.460901 | 7.3:+60800305 | None:intergenic |
TCACTGGTGTTTGTCTTCGT+GGG | 0.464210 | 7.3:+60800321 | None:intergenic |
ACAGGAGGATGGCTCGTGAC+AGG | 0.468032 | 7.3:+60799581 | None:intergenic |
TGTTTCCGAGGAGGAGGAGG+TGG | 0.470810 | 7.3:-60801165 | MS.gene070787:CDS |
TTTAGAAGGAGGCATTGGTC+TGG | 0.472306 | 7.3:+60800284 | None:intergenic |
AACGGTTTCAATTTATTCCC+TGG | 0.475915 | 7.3:+60800783 | None:intergenic |
CATAGTTCAAATGGTAAAGA+AGG | 0.484879 | 7.3:-60800087 | MS.gene070787:CDS |
TAATGGCATGGATAAATTTG+AGG | 0.491011 | 7.3:-60793556 | MS.gene070787:CDS |
TACTGTTTCCGAGGAGGAGG+AGG | 0.491722 | 7.3:-60801168 | MS.gene070787:CDS |
GGGAATAAATTGAAACCGTT+AGG | 0.493247 | 7.3:-60800780 | MS.gene070787:CDS |
TTCGACATAACCAGTTTAGC+AGG | 0.495088 | 7.3:+60800192 | None:intergenic |
TAACTTGAGGTTGAGGAGGA+GGG | 0.499619 | 7.3:+60800220 | None:intergenic |
GAACATGGTAATTGCTCAGC+AGG | 0.502352 | 7.3:+60792724 | None:intergenic |
ATGAAGAGGTGGACATTTGT+GGG | 0.502886 | 7.3:-60799613 | MS.gene070787:CDS |
AGATCCTGAGAAAATGCGTC+TGG | 0.502989 | 7.3:-60793155 | MS.gene070787:CDS |
AGGAGGAGGTGGAGGATACT+CGG | 0.506198 | 7.3:-60801154 | MS.gene070787:CDS |
TCAGGTCGACGAGGGGCGTA+TGG | 0.506447 | 7.3:-60801110 | MS.gene070787:CDS |
GTTATGACACTGAAATAGTC+AGG | 0.508133 | 7.3:+60800567 | None:intergenic |
AGAAGGAGGCATTGGTCTGG+TGG | 0.508164 | 7.3:+60800287 | None:intergenic |
TGGAATTTGCTGCTGATGTG+AGG | 0.509245 | 7.3:-60800482 | MS.gene070787:CDS |
TGTACTGTTCCCAAATCCAT+AGG | 0.509426 | 7.3:+60800540 | None:intergenic |
TATAAGCACTGGTGCTCAGA+TGG | 0.510021 | 7.3:-60796182 | MS.gene070787:CDS |
GGTTGTGGTTAGGGTGTGAA+GGG | 0.510992 | 7.3:-60793178 | MS.gene070787:intron |
GTAAATATTTCGAAACGAGA+TGG | 0.511284 | 7.3:-60800389 | MS.gene070787:CDS |
TTCCGAGGAGGAGGAGGTGG+AGG | 0.512355 | 7.3:-60801162 | MS.gene070787:CDS |
AGTTGAAGCATGTGAAATAG+AGG | 0.512491 | 7.3:-60799953 | MS.gene070787:intron |
TGGTTGTGGTTAGGGTGTGA+AGG | 0.512870 | 7.3:-60793179 | MS.gene070787:intron |
TGAACATTTACTCGTTTGGT+AGG | 0.513583 | 7.3:+60799538 | None:intergenic |
TACATTGCAGATTCGGACTC+TGG | 0.516334 | 7.3:-60798277 | MS.gene070787:intron |
GATGAAGCACAAATTTGGTT+GGG | 0.516359 | 7.3:-60800628 | MS.gene070787:CDS |
TGCACGACAAGCACTGCTAC+AGG | 0.518154 | 7.3:-60792897 | MS.gene070787:intron |
GTGTTTGTCTTCGTGGGCAA+CGG | 0.519404 | 7.3:+60800327 | None:intergenic |
GGTCAACATTATTGGAAATG+AGG | 0.520393 | 7.3:-60799639 | MS.gene070787:CDS |
GTCCTGATGACTCTCAGAAT+GGG | 0.520588 | 7.3:-60792687 | MS.gene070787:CDS |
ACGAGTAAATGTTCAAGTCC+AGG | 0.522410 | 7.3:-60799530 | MS.gene070787:CDS |
ATCCCATTCTGAGAGTCATC+AGG | 0.522555 | 7.3:+60792685 | None:intergenic |
GTTGAGGATGAAGAGGAAGA+AGG | 0.523131 | 7.3:-60792604 | MS.gene070787:CDS |
GAAGAAGGAGATCCACTTTG+TGG | 0.523803 | 7.3:-60792589 | MS.gene070787:CDS |
GTTTGGTGGGAGTAATCCCT+TGG | 0.524182 | 7.3:-60792650 | MS.gene070787:CDS |
TTGGAGATGGAACGACGAAA+AGG | 0.525311 | 7.3:-60793121 | MS.gene070787:intron |
AAGCCTCGTGGATGGAATAG+AGG | 0.526795 | 7.3:-60800747 | MS.gene070787:CDS |
GTACAAAACAAGATTGCTAA+AGG | 0.529289 | 7.3:-60800522 | MS.gene070787:CDS |
TCCTCCTGTAGTGATTGAAA+AGG | 0.529502 | 7.3:-60799567 | MS.gene070787:CDS |
CAGGAGGATGGCTCGTGACA+GGG | 0.532677 | 7.3:+60799582 | None:intergenic |
CCACACTTACCACTGCTCCC+TGG | 0.534511 | 7.3:+60799512 | None:intergenic |
ACTTACTGTTTCCGAGGAGG+AGG | 0.534737 | 7.3:-60801171 | MS.gene070787:CDS |
TTGTGGAAAGTTTGAGACTC+AGG | 0.534785 | 7.3:-60800721 | MS.gene070787:CDS |
AGGATCATACACAGGCCCAT+TGG | 0.535323 | 7.3:-60800502 | MS.gene070787:CDS |
TGCTGAAGAAGCTAGAAAGC+GGG | 0.537428 | 7.3:-60792975 | MS.gene070787:CDS |
AATAAATAATGGCTAAGAGT+AGG | 0.537756 | 7.3:-60801247 | None:intergenic |
AAGAAATCAATGATGTAGGC+AGG | 0.537972 | 7.3:+60800117 | None:intergenic |
TTTGCTTGTAGGTAATGATC+CGG | 0.540246 | 7.3:-60799672 | MS.gene070787:intron |
AGTCCTGATGACTCTCAGAA+TGG | 0.541291 | 7.3:-60792688 | MS.gene070787:CDS |
ACATCAGCAGCAAATTCCAA+TGG | 0.541597 | 7.3:+60800486 | None:intergenic |
TCCTGTAAATGATGTAGAAG+AGG | 0.542521 | 7.3:-60792560 | MS.gene070787:CDS |
CGTTTCGAAATATTTACTAA+GGG | 0.543275 | 7.3:+60800395 | None:intergenic |
AGGATTGTATATTAAAGTTG+AGG | 0.543967 | 7.3:-60792620 | MS.gene070787:CDS |
ACCTCGAGGAAATCAGTACC+AGG | 0.544906 | 7.3:-60800801 | MS.gene070787:CDS |
ATCCTCCACCTCCTCCTCCT+CGG | 0.544913 | 7.3:+60801160 | None:intergenic |
TACAATCCTAGTTGTTCCAA+GGG | 0.548264 | 7.3:+60792634 | None:intergenic |
TAAGACTGATGTCCATATCA+TGG | 0.549025 | 7.3:-60800424 | MS.gene070787:CDS |
TGATCAATTCAGGTCGACGA+GGG | 0.549809 | 7.3:-60801118 | MS.gene070787:CDS |
CTTGTCTCGTCCACAGAACA+TGG | 0.550433 | 7.3:+60792709 | None:intergenic |
TATTAAAGTTGAGGATGAAG+AGG | 0.551254 | 7.3:-60792611 | MS.gene070787:CDS |
CCTGTAAATGATGTAGAAGA+GGG | 0.552075 | 7.3:-60792559 | MS.gene070787:CDS |
ATGTTGACCTCTTCATCAGC+CGG | 0.554476 | 7.3:+60799653 | None:intergenic |
TGATGAAGCACAAATTTGGT+TGG | 0.558662 | 7.3:-60800629 | MS.gene070787:CDS |
GTACCAGAAATTATAAGCAC+TGG | 0.559163 | 7.3:-60796193 | MS.gene070787:CDS |
GGCTTCTGAGTCTGACCTAA+CGG | 0.559560 | 7.3:+60800765 | None:intergenic |
CTGCGGAATCCAGACGAAAG+AGG | 0.562866 | 7.3:-60792937 | MS.gene070787:CDS |
TTTGTCTTCGTGGGCAACGG+TGG | 0.563282 | 7.3:+60800330 | None:intergenic |
GGTGGGATAACTTGAGGTTG+AGG | 0.564668 | 7.3:+60800213 | None:intergenic |
GATGAAGAGGTGGACATTTG+TGG | 0.565707 | 7.3:-60799614 | MS.gene070787:CDS |
GACTATGATAGCTTTCAAGA+TGG | 0.566283 | 7.3:-60793504 | MS.gene070787:intron |
TGATGACTCTCAGAATGGGA+TGG | 0.566701 | 7.3:-60792683 | MS.gene070787:CDS |
TTGAGAGTCAGTTAATGGCA+TGG | 0.568078 | 7.3:-60793568 | MS.gene070787:intron |
GGTTTAAGTCTGAGCTTGAA+CGG | 0.568375 | 7.3:-60801022 | MS.gene070787:CDS |
CATCAGCAGCAAATTCCAAT+GGG | 0.568510 | 7.3:+60800487 | None:intergenic |
AGACTCAGAAGCCTCGTGGA+TGG | 0.568729 | 7.3:-60800755 | MS.gene070787:CDS |
CGAGTAAATGTTCAAGTCCA+GGG | 0.568800 | 7.3:-60799529 | MS.gene070787:CDS |
ACAGGATTTGGACCACAAAG+TGG | 0.568827 | 7.3:+60792577 | None:intergenic |
CAATTCGATAAAGTTTATCA+GGG | 0.569763 | 7.3:+60793363 | None:intergenic |
TACTGAACTTACTGTTTCCG+AGG | 0.570048 | 7.3:-60801177 | MS.gene070787:CDS |
TTCAGAAGTATGAGCAGCAG+TGG | 0.570546 | 7.3:+60796150 | None:intergenic |
ATACAATCCTAGTTGTTCCA+AGG | 0.572163 | 7.3:+60792633 | None:intergenic |
TGCGGAATCCAGACGAAAGA+GGG | 0.572514 | 7.3:-60792936 | MS.gene070787:CDS |
TTCAACTTAACCACATCCAC+AGG | 0.574405 | 7.3:+60800594 | None:intergenic |
GGATGGAATAGAGGCACTTG+TGG | 0.578022 | 7.3:-60800738 | MS.gene070787:CDS |
TAATGATCCGGCTGATGAAG+AGG | 0.578523 | 7.3:-60799660 | MS.gene070787:CDS |
TTAGCAGGTGGGATAACTTG+AGG | 0.578736 | 7.3:+60800207 | None:intergenic |
GGCAGAAGAAGAAGCTGCTG+CGG | 0.580854 | 7.3:-60792954 | MS.gene070787:CDS |
GCTTGCAACGATGAATTGCT+TGG | 0.582867 | 7.3:+60799771 | None:intergenic |
GGGATAACTTGAGGTTGAGG+AGG | 0.584461 | 7.3:+60800216 | None:intergenic |
AGTCGTTGTATCCGATGGCT+CGG | 0.586025 | 7.3:-60801201 | MS.gene070787:CDS |
TCAATATCTTCTTCAGTACA+AGG | 0.590197 | 7.3:-60800849 | MS.gene070787:CDS |
GATGACTCTCAGAATGGGAT+GGG | 0.590499 | 7.3:-60792682 | MS.gene070787:CDS |
TTTCAATCACTACAGGAGGA+TGG | 0.592776 | 7.3:+60799570 | None:intergenic |
TGATGATGAAGCAATACCAC+AGG | 0.595206 | 7.3:-60798233 | MS.gene070787:CDS |
TGGAAATGAGGCTGATGAAG+AGG | 0.597555 | 7.3:-60799627 | MS.gene070787:CDS |
AAGGCTACAAGCAGAAGCGA+AGG | 0.598802 | 7.3:-60792999 | MS.gene070787:CDS |
AAGTTCAGTAGCCGAGCCAT+CGG | 0.604973 | 7.3:+60801190 | None:intergenic |
CCCTGGTACTGATTTCCTCG+AGG | 0.606341 | 7.3:+60800800 | None:intergenic |
AATACCACAGGATTTATCAA+AGG | 0.612132 | 7.3:-60798221 | MS.gene070787:intron |
TGTTCAAGTCCAGGGAGCAG+TGG | 0.614725 | 7.3:-60799521 | MS.gene070787:intron |
AGGAGGATGGCTCGTGACAG+GGG | 0.616238 | 7.3:+60799583 | None:intergenic |
GATCAATTCAGGTCGACGAG+GGG | 0.617702 | 7.3:-60801117 | MS.gene070787:CDS |
TCAAGTTGTCTATTTGACCA+CGG | 0.619949 | 7.3:+60800919 | None:intergenic |
TCGAGAAAAGACACTGACCC+AGG | 0.622144 | 7.3:-60793300 | MS.gene070787:intron |
GACATAACCAGTTTAGCAGG+TGG | 0.626935 | 7.3:+60800195 | None:intergenic |
TGTAAATGATGTAGAAGAGG+GGG | 0.628070 | 7.3:-60792557 | MS.gene070787:CDS |
ATTCTTGAGCAGAAAAGGCA+AGG | 0.631468 | 7.3:-60793018 | MS.gene070787:intron |
ATATGGACATCAGTCTTAGG+TGG | 0.634512 | 7.3:+60800429 | None:intergenic |
ATTGCAGATTCGGACTCTGG+TGG | 0.634779 | 7.3:-60798274 | MS.gene070787:intron |
GGTCAGACTCAGAAGCCTCG+TGG | 0.635090 | 7.3:-60800759 | MS.gene070787:CDS |
ACATAACCAGTTTAGCAGGT+GGG | 0.635920 | 7.3:+60800196 | None:intergenic |
AGTAATCCCTTGGAACAACT+AGG | 0.636386 | 7.3:-60792640 | MS.gene070787:CDS |
GAAACAGTCGTTGTATCCGA+TGG | 0.640912 | 7.3:-60801206 | MS.gene070787:CDS |
TTGATCAATTCAGGTCGACG+AGG | 0.659743 | 7.3:-60801119 | MS.gene070787:CDS |
TGAACTTACTGTTTCCGAGG+AGG | 0.660482 | 7.3:-60801174 | MS.gene070787:CDS |
AAATGAGGCTGATGAAGAGG+TGG | 0.664901 | 7.3:-60799624 | MS.gene070787:CDS |
TGGTTATGTCGAATCAAGAG+AGG | 0.666624 | 7.3:-60800182 | MS.gene070787:CDS |
CTGCTGAAGAAGCTAGAAAG+CGG | 0.666877 | 7.3:-60792976 | MS.gene070787:CDS |
ATATTAATATCACTAGAAGA+CGG | 0.668747 | 7.3:+60800945 | None:intergenic |
CTGTAAATGATGTAGAAGAG+GGG | 0.674177 | 7.3:-60792558 | MS.gene070787:CDS |
AGTGATATTAATATCAACCG+TGG | 0.675985 | 7.3:-60800936 | MS.gene070787:CDS |
ATTGCTAAAGGATCATACAC+AGG | 0.681908 | 7.3:-60800510 | MS.gene070787:CDS |
CAGACCTTTGATAAATCCTG+TGG | 0.684227 | 7.3:+60798217 | None:intergenic |
GCTAAGAGTAGGCATTCTGG+AGG | 0.694361 | 7.3:-60801236 | MS.gene070787:CDS |
AATTCGATAAAGTTTATCAG+GGG | 0.701078 | 7.3:+60793364 | None:intergenic |
CCTCGAGGAAATCAGTACCA+GGG | 0.711757 | 7.3:-60800800 | MS.gene070787:CDS |
AAACATCCATAGAAACCTCG+AGG | 0.714436 | 7.3:-60800815 | MS.gene070787:CDS |
TGAGCAATTACCATGTTCTG+TGG | 0.724551 | 7.3:-60792719 | MS.gene070787:CDS |
GTGCCTCTATTCCATCCACG+AGG | 0.777083 | 7.3:+60800744 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr7.3 | gene | 60792546 | 60801261 | 60792546 | ID=MS.gene070787 |
chr7.3 | mRNA | 60792546 | 60801261 | 60792546 | ID=MS.gene070787.t1;Parent=MS.gene070787 |
chr7.3 | exon | 60799954 | 60801261 | 60799954 | ID=MS.gene070787.t1.exon1;Parent=MS.gene070787.t1 |
chr7.3 | CDS | 60799954 | 60801261 | 60799954 | ID=cds.MS.gene070787.t1;Parent=MS.gene070787.t1 |
chr7.3 | exon | 60799763 | 60799811 | 60799763 | ID=MS.gene070787.t1.exon2;Parent=MS.gene070787.t1 |
chr7.3 | CDS | 60799763 | 60799811 | 60799763 | ID=cds.MS.gene070787.t1;Parent=MS.gene070787.t1 |
chr7.3 | exon | 60799522 | 60799683 | 60799522 | ID=MS.gene070787.t1.exon3;Parent=MS.gene070787.t1 |
chr7.3 | CDS | 60799522 | 60799683 | 60799522 | ID=cds.MS.gene070787.t1;Parent=MS.gene070787.t1 |
chr7.3 | exon | 60798222 | 60798289 | 60798222 | ID=MS.gene070787.t1.exon4;Parent=MS.gene070787.t1 |
chr7.3 | CDS | 60798222 | 60798289 | 60798222 | ID=cds.MS.gene070787.t1;Parent=MS.gene070787.t1 |
chr7.3 | exon | 60796143 | 60796215 | 60796143 | ID=MS.gene070787.t1.exon5;Parent=MS.gene070787.t1 |
chr7.3 | CDS | 60796143 | 60796215 | 60796143 | ID=cds.MS.gene070787.t1;Parent=MS.gene070787.t1 |
chr7.3 | exon | 60793505 | 60793585 | 60793505 | ID=MS.gene070787.t1.exon6;Parent=MS.gene070787.t1 |
chr7.3 | CDS | 60793505 | 60793585 | 60793505 | ID=cds.MS.gene070787.t1;Parent=MS.gene070787.t1 |
chr7.3 | exon | 60793301 | 60793416 | 60793301 | ID=MS.gene070787.t1.exon7;Parent=MS.gene070787.t1 |
chr7.3 | CDS | 60793301 | 60793416 | 60793301 | ID=cds.MS.gene070787.t1;Parent=MS.gene070787.t1 |
chr7.3 | exon | 60793122 | 60793188 | 60793122 | ID=MS.gene070787.t1.exon8;Parent=MS.gene070787.t1 |
chr7.3 | CDS | 60793122 | 60793188 | 60793122 | ID=cds.MS.gene070787.t1;Parent=MS.gene070787.t1 |
chr7.3 | exon | 60792898 | 60793028 | 60792898 | ID=MS.gene070787.t1.exon9;Parent=MS.gene070787.t1 |
chr7.3 | CDS | 60792898 | 60793028 | 60792898 | ID=cds.MS.gene070787.t1;Parent=MS.gene070787.t1 |
chr7.3 | exon | 60792546 | 60792815 | 60792546 | ID=MS.gene070787.t1.exon10;Parent=MS.gene070787.t1 |
chr7.3 | CDS | 60792546 | 60792815 | 60792546 | ID=cds.MS.gene070787.t1;Parent=MS.gene070787.t1 |
Gene Sequence |
Protein sequence |