Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene071211.t1 | RHN78445.1 | 98.3 | 295 | 5 | 0 | 1 | 295 | 183 | 477 | 1.40E-168 | 602.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene071211.t1 | Q8GT20 | 76.4 | 275 | 65 | 0 | 1 | 275 | 169 | 443 | 9.8e-126 | 451.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene071211.t1 | A0A072VS80 | 98.3 | 295 | 5 | 0 | 1 | 295 | 142 | 436 | 1.0e-168 | 602.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene052637 | MS.gene071211 | 0.832874 | 7.37E-56 | -1.69E-46 |
| MS.gene053147 | MS.gene071211 | 0.814294 | 1.66E-51 | -1.69E-46 |
| MS.gene054581 | MS.gene071211 | 0.822549 | 2.23E-53 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene071211 | MS.gene38699 | PPI |
| MS.gene071211 | MS.gene95242 | PPI |
| MS.gene071211 | MS.gene038905 | PPI |
| MS.gene071211 | MS.gene38704 | PPI |
| MS.gene071211 | MS.gene012959 | PPI |
| MS.gene071211 | MS.gene012957 | PPI |
| MS.gene071211 | MS.gene32938 | PPI |
| MS.gene071211 | MS.gene042317 | PPI |
| MS.gene071211 | MS.gene069321 | PPI |
| MS.gene071211 | MS.gene38702 | PPI |
| MS.gene071211 | MS.gene069436 | PPI |
| MS.gene071211 | MS.gene32934 | PPI |
| MS.gene071211 | MS.gene012965 | PPI |
| MS.gene071211 | MS.gene046246 | PPI |
| MS.gene071211 | MS.gene38365 | PPI |
| MS.gene071211 | MS.gene012961 | PPI |
| MS.gene071211 | MS.gene38363 | PPI |
| MS.gene071211 | MS.gene66891 | PPI |
| MS.gene071211 | MS.gene32936 | PPI |
| MS.gene071211 | MS.gene38359 | PPI |
| MS.gene071211 | MS.gene38703 | PPI |
| MS.gene071211 | MS.gene039597 | PPI |
| MS.gene071211 | MS.gene38700 | PPI |
| MS.gene071211 | MS.gene32933 | PPI |
| MS.gene071211 | MS.gene38362 | PPI |
| MS.gene071211 | MS.gene38361 | PPI |
| MS.gene071211 | MS.gene38706 | PPI |
| MS.gene071211 | MS.gene38701 | PPI |
| MS.gene071211 | MS.gene012960 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene071211.t1 | MTR_1g040195 | 98.305 | 295 | 5 | 0 | 1 | 295 | 142 | 436 | 0.0 | 605 |
| MS.gene071211.t1 | MTR_1g040215 | 70.370 | 297 | 86 | 2 | 1 | 295 | 165 | 461 | 5.70e-152 | 433 |
| MS.gene071211.t1 | MTR_0042s0190 | 69.024 | 297 | 90 | 2 | 1 | 295 | 1 | 297 | 7.84e-152 | 427 |
| MS.gene071211.t1 | MTR_1g040175 | 70.034 | 297 | 84 | 3 | 1 | 295 | 165 | 458 | 7.25e-144 | 412 |
| MS.gene071211.t1 | MTR_1g040315 | 67.905 | 296 | 51 | 4 | 1 | 295 | 165 | 417 | 3.63e-135 | 389 |
| MS.gene071211.t1 | MTR_1g040320 | 63.851 | 296 | 71 | 2 | 1 | 295 | 165 | 425 | 1.78e-125 | 365 |
| MS.gene071211.t1 | MTR_0042s0190 | 69.397 | 232 | 69 | 2 | 66 | 295 | 1 | 232 | 2.62e-116 | 334 |
| MS.gene071211.t1 | MTR_7g114520 | 55.229 | 306 | 115 | 7 | 1 | 295 | 168 | 462 | 2.14e-112 | 333 |
| MS.gene071211.t1 | MTR_7g114560 | 55.667 | 300 | 122 | 7 | 1 | 295 | 166 | 459 | 2.50e-112 | 332 |
| MS.gene071211.t1 | MTR_5g076700 | 55.333 | 300 | 124 | 6 | 1 | 295 | 166 | 460 | 4.74e-111 | 329 |
| MS.gene071211.t1 | MTR_7g114510 | 54.636 | 302 | 123 | 7 | 1 | 295 | 26 | 320 | 8.31e-111 | 323 |
| MS.gene071211.t1 | MTR_7g114550 | 55.172 | 290 | 115 | 7 | 1 | 282 | 166 | 448 | 4.41e-109 | 324 |
| MS.gene071211.t1 | MTR_7g114470 | 54.667 | 300 | 127 | 5 | 1 | 295 | 167 | 462 | 8.31e-109 | 323 |
| MS.gene071211.t1 | MTR_1g081660 | 57.246 | 276 | 115 | 3 | 1 | 274 | 174 | 448 | 6.79e-104 | 310 |
| MS.gene071211.t1 | MTR_7g114420 | 52.000 | 300 | 107 | 7 | 1 | 295 | 1 | 268 | 3.60e-100 | 295 |
| MS.gene071211.t1 | MTR_7g114490 | 54.982 | 271 | 114 | 5 | 1 | 266 | 166 | 433 | 4.03e-100 | 303 |
| MS.gene071211.t1 | MTR_3g035000 | 60.000 | 225 | 63 | 4 | 31 | 253 | 39 | 238 | 2.85e-83 | 253 |
| MS.gene071211.t1 | MTR_0502s0010 | 57.062 | 177 | 66 | 5 | 1 | 171 | 66 | 238 | 5.58e-63 | 199 |
| MS.gene071211.t1 | MTR_3g098980 | 32.103 | 271 | 170 | 7 | 1 | 266 | 167 | 428 | 7.55e-43 | 152 |
| MS.gene071211.t1 | MTR_8g096530 | 30.526 | 285 | 185 | 6 | 1 | 280 | 160 | 436 | 2.21e-36 | 135 |
| MS.gene071211.t1 | MTR_7g027175 | 31.602 | 231 | 149 | 5 | 1 | 225 | 169 | 396 | 3.37e-35 | 132 |
| MS.gene071211.t1 | MTR_1g053315 | 27.368 | 285 | 192 | 9 | 1 | 274 | 183 | 463 | 1.80e-25 | 105 |
| MS.gene071211.t1 | MTR_3g071320 | 27.660 | 282 | 182 | 7 | 1 | 270 | 161 | 432 | 5.56e-25 | 103 |
| MS.gene071211.t1 | MTR_4g007540 | 28.369 | 282 | 176 | 12 | 1 | 266 | 155 | 426 | 5.92e-24 | 100 |
| MS.gene071211.t1 | MTR_4g055170 | 26.316 | 285 | 192 | 7 | 3 | 271 | 171 | 453 | 3.41e-23 | 99.0 |
| MS.gene071211.t1 | MTR_3g112180 | 30.705 | 241 | 155 | 7 | 1 | 233 | 166 | 402 | 6.31e-23 | 98.2 |
| MS.gene071211.t1 | MTR_8g075610 | 27.915 | 283 | 179 | 9 | 1 | 270 | 146 | 416 | 1.74e-22 | 96.7 |
| MS.gene071211.t1 | MTR_2g015430 | 27.957 | 279 | 189 | 9 | 1 | 270 | 159 | 434 | 1.67e-21 | 94.4 |
| MS.gene071211.t1 | MTR_6g053810 | 27.304 | 293 | 184 | 10 | 3 | 273 | 177 | 462 | 2.76e-21 | 93.6 |
| MS.gene071211.t1 | MTR_2g064495 | 26.165 | 279 | 185 | 8 | 1 | 266 | 155 | 425 | 6.44e-21 | 92.4 |
| MS.gene071211.t1 | MTR_2g105330 | 26.165 | 279 | 185 | 8 | 1 | 266 | 155 | 425 | 1.57e-20 | 91.3 |
| MS.gene071211.t1 | MTR_3g026950 | 24.903 | 257 | 160 | 6 | 1 | 226 | 155 | 409 | 1.12e-18 | 85.9 |
| MS.gene071211.t1 | MTR_7g085930 | 27.532 | 316 | 159 | 14 | 2 | 268 | 161 | 455 | 1.20e-18 | 85.9 |
| MS.gene071211.t1 | MTR_7g084940 | 27.106 | 273 | 182 | 7 | 3 | 266 | 172 | 436 | 5.79e-18 | 84.0 |
| MS.gene071211.t1 | MTR_3g465980 | 26.263 | 297 | 187 | 10 | 1 | 273 | 169 | 457 | 7.71e-17 | 80.9 |
| MS.gene071211.t1 | MTR_7g085990 | 26.129 | 310 | 171 | 13 | 2 | 268 | 157 | 451 | 7.81e-17 | 80.9 |
| MS.gene071211.t1 | MTR_4g127650 | 25.168 | 298 | 184 | 10 | 1 | 270 | 166 | 452 | 3.39e-16 | 79.0 |
| MS.gene071211.t1 | MTR_3g465990 | 25.589 | 297 | 189 | 10 | 1 | 273 | 169 | 457 | 1.26e-15 | 77.0 |
| MS.gene071211.t1 | MTR_7g110610 | 25.620 | 242 | 128 | 8 | 1 | 237 | 155 | 349 | 2.07e-15 | 76.3 |
| MS.gene071211.t1 | MTR_4g097090 | 27.376 | 263 | 156 | 10 | 36 | 270 | 197 | 452 | 2.51e-15 | 76.3 |
| MS.gene071211.t1 | MTR_7g056087 | 25.347 | 288 | 175 | 10 | 3 | 268 | 164 | 433 | 4.61e-15 | 75.5 |
| MS.gene071211.t1 | MTR_3g051820 | 48.958 | 96 | 43 | 4 | 201 | 295 | 1 | 91 | 3.21e-14 | 67.4 |
| MS.gene071211.t1 | MTR_7g084910 | 25.000 | 272 | 161 | 10 | 3 | 259 | 173 | 416 | 8.60e-14 | 71.6 |
| MS.gene071211.t1 | MTR_4g094832 | 25.714 | 280 | 170 | 10 | 3 | 264 | 158 | 417 | 2.55e-13 | 70.1 |
| MS.gene071211.t1 | MTR_4g094842 | 25.818 | 275 | 176 | 10 | 3 | 264 | 176 | 435 | 4.42e-13 | 69.3 |
| MS.gene071211.t1 | MTR_3g102020 | 24.915 | 293 | 186 | 10 | 1 | 277 | 175 | 449 | 7.42e-13 | 68.9 |
| MS.gene071211.t1 | MTR_3g101900 | 30.168 | 179 | 112 | 5 | 69 | 235 | 239 | 416 | 1.91e-12 | 67.4 |
| MS.gene071211.t1 | MTR_3g101930 | 25.882 | 255 | 162 | 9 | 1 | 235 | 177 | 424 | 2.71e-12 | 67.0 |
| MS.gene071211.t1 | MTR_3g465930 | 24.746 | 295 | 195 | 9 | 1 | 273 | 172 | 461 | 2.90e-12 | 67.0 |
| MS.gene071211.t1 | MTR_4g094835 | 23.636 | 275 | 182 | 9 | 3 | 264 | 174 | 433 | 4.09e-12 | 66.6 |
| MS.gene071211.t1 | MTR_4g013050 | 26.768 | 198 | 117 | 8 | 89 | 266 | 213 | 402 | 5.80e-12 | 65.9 |
| MS.gene071211.t1 | MTR_3g101960 | 26.190 | 252 | 162 | 8 | 1 | 235 | 174 | 418 | 7.83e-12 | 65.9 |
| MS.gene071211.t1 | MTR_4g094838 | 24.000 | 275 | 169 | 7 | 1 | 264 | 174 | 419 | 5.63e-11 | 63.2 |
| MS.gene071211.t1 | MTR_3g049140 | 26.282 | 156 | 97 | 3 | 85 | 224 | 47 | 200 | 6.60e-11 | 62.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene071211.t1 | AT5G17540 | 54.064 | 283 | 121 | 7 | 1 | 278 | 166 | 444 | 1.58e-96 | 292 |
| MS.gene071211.t1 | AT3G03480 | 50.714 | 280 | 128 | 8 | 1 | 275 | 176 | 450 | 2.81e-88 | 271 |
| MS.gene071211.t1 | AT5G41040 | 29.496 | 278 | 179 | 7 | 1 | 270 | 170 | 438 | 1.38e-39 | 144 |
| MS.gene071211.t1 | AT5G41040 | 29.496 | 278 | 179 | 7 | 1 | 270 | 186 | 454 | 1.39e-39 | 144 |
| MS.gene071211.t1 | AT5G63560 | 29.927 | 274 | 177 | 7 | 1 | 271 | 164 | 425 | 1.58e-35 | 132 |
| MS.gene071211.t1 | AT3G48720 | 29.044 | 272 | 177 | 8 | 1 | 266 | 163 | 424 | 6.68e-34 | 128 |
| MS.gene071211.t1 | AT1G28680 | 29.066 | 289 | 185 | 9 | 1 | 275 | 163 | 445 | 2.08e-27 | 110 |
| MS.gene071211.t1 | AT2G40230 | 31.897 | 232 | 148 | 5 | 1 | 224 | 161 | 390 | 9.99e-27 | 108 |
| MS.gene071211.t1 | AT1G65450 | 28.269 | 283 | 177 | 7 | 8 | 274 | 13 | 285 | 2.26e-26 | 105 |
| MS.gene071211.t1 | AT1G65450 | 28.269 | 283 | 177 | 7 | 8 | 274 | 177 | 449 | 2.09e-25 | 105 |
| MS.gene071211.t1 | AT3G62160 | 26.712 | 292 | 183 | 10 | 1 | 280 | 156 | 428 | 1.47e-24 | 102 |
| MS.gene071211.t1 | AT1G28680 | 33.158 | 190 | 120 | 4 | 1 | 185 | 163 | 350 | 1.26e-23 | 99.8 |
| MS.gene071211.t1 | AT3G47170 | 26.214 | 309 | 172 | 11 | 3 | 274 | 177 | 466 | 8.20e-23 | 98.2 |
| MS.gene071211.t1 | AT1G27620 | 25.773 | 291 | 193 | 8 | 1 | 280 | 159 | 437 | 2.06e-22 | 96.7 |
| MS.gene071211.t1 | AT2G19070 | 26.510 | 298 | 180 | 12 | 3 | 270 | 159 | 447 | 2.71e-20 | 90.9 |
| MS.gene071211.t1 | AT5G57840 | 25.188 | 266 | 164 | 6 | 26 | 268 | 179 | 432 | 2.86e-19 | 87.8 |
| MS.gene071211.t1 | AT5G48930 | 25.087 | 287 | 185 | 9 | 2 | 270 | 156 | 430 | 1.16e-18 | 85.9 |
| MS.gene071211.t1 | AT1G03390 | 25.177 | 282 | 194 | 10 | 1 | 270 | 179 | 455 | 2.08e-18 | 85.5 |
| MS.gene071211.t1 | AT2G25150 | 25.606 | 289 | 193 | 9 | 3 | 275 | 172 | 454 | 1.19e-17 | 83.2 |
| MS.gene071211.t1 | AT5G07080 | 25.253 | 297 | 175 | 10 | 1 | 271 | 171 | 446 | 1.80e-17 | 82.4 |
| MS.gene071211.t1 | AT2G23510 | 28.428 | 299 | 169 | 11 | 1 | 273 | 171 | 450 | 1.87e-17 | 82.4 |
| MS.gene071211.t1 | AT5G07860 | 30.093 | 216 | 128 | 6 | 66 | 271 | 239 | 441 | 1.18e-16 | 80.1 |
| MS.gene071211.t1 | AT5G07870 | 28.111 | 217 | 121 | 6 | 66 | 264 | 249 | 448 | 1.24e-13 | 71.2 |
| MS.gene071211.t1 | AT1G78990 | 24.662 | 296 | 194 | 10 | 1 | 275 | 159 | 446 | 4.75e-13 | 69.3 |
| MS.gene071211.t1 | AT5G42830 | 29.439 | 214 | 122 | 6 | 66 | 264 | 237 | 436 | 1.16e-12 | 68.2 |
| MS.gene071211.t1 | AT5G67150 | 27.513 | 189 | 111 | 7 | 89 | 266 | 262 | 435 | 3.47e-12 | 67.0 |
| MS.gene071211.t1 | AT5G07850 | 27.473 | 182 | 120 | 5 | 66 | 235 | 240 | 421 | 4.08e-12 | 66.6 |
| MS.gene071211.t1 | AT5G67160 | 29.730 | 185 | 114 | 5 | 90 | 269 | 251 | 424 | 6.41e-11 | 63.2 |
Find 0 sgRNAs with CRISPR-Local
Find 90 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| ! | ATACCTTTCAAAAATGCTAA+AGG | + | 6860:90249-90268 | MS.gene071211:CDS | 25.0% |
| AAACTAATGGAAAATCCGTT+GGG | + | 6860:89988-90007 | MS.gene071211:CDS | 30.0% | |
| AACATTAACGAACCTACTAT+TGG | + | 6860:90357-90376 | MS.gene071211:CDS | 30.0% | |
| AAGGAAGAAACAATGAAACT+AGG | - | 6860:90393-90412 | MS.gene071211:intergenic | 30.0% | |
| GCAGATTTAATGGTTATCAA+GGG | + | 6860:90075-90094 | MS.gene071211:CDS | 30.0% | |
| TGCAGATTTAATGGTTATCA+AGG | + | 6860:90074-90093 | MS.gene071211:CDS | 30.0% | |
| TTTCAAAAATGCTAAAGGAG+AGG | + | 6860:90254-90273 | MS.gene071211:CDS | 30.0% | |
| ! | GAAACAATGAAACTAGGTTT+TGG | - | 6860:90387-90406 | MS.gene071211:intergenic | 30.0% |
| ! | TCTCCTTTAGCATTTTTGAA+AGG | - | 6860:90255-90274 | MS.gene071211:intergenic | 30.0% |
| !!! | CGAAATTGGATTGTTTTTGT+TGG | - | 6860:89795-89814 | MS.gene071211:intergenic | 30.0% |
| AAAAATGCTAAAGGAGAGGA+AGG | + | 6860:90258-90277 | MS.gene071211:CDS | 35.0% | |
| AACTAATGGAAAATCCGTTG+GGG | + | 6860:89989-90008 | MS.gene071211:CDS | 35.0% | |
| AATTATCCCCTTAGATGACA+TGG | + | 6860:89705-89724 | MS.gene071211:CDS | 35.0% | |
| ACTGAAGAAAAAAGAGCGAT+GGG | - | 6860:89731-89750 | MS.gene071211:intergenic | 35.0% | |
| ATATAAAAGCTAGCAACACC+AGG | - | 6860:90231-90250 | MS.gene071211:intergenic | 35.0% | |
| ATTAACGAACCTACTATTGG+TGG | + | 6860:90360-90379 | MS.gene071211:CDS | 35.0% | |
| CTTCTAACCACAGTAAAATG+TGG | - | 6860:90105-90124 | MS.gene071211:intergenic | 35.0% | |
| GAAACTAATGGAAAATCCGT+TGG | + | 6860:89987-90006 | MS.gene071211:CDS | 35.0% | |
| GAATGAACCTTCAATCTTAC+CGG | + | 6860:89591-89610 | MS.gene071211:CDS | 35.0% | |
| GCATTCAGTTGCAGATTTAA+TGG | + | 6860:90065-90084 | MS.gene071211:CDS | 35.0% | |
| GGATTTGGAGATGTTGAATT+TGG | + | 6860:90153-90172 | MS.gene071211:CDS | 35.0% | |
| TAAGGGGATAATTGTTCCTT+TGG | - | 6860:89698-89717 | MS.gene071211:intergenic | 35.0% | |
| TGGAGATGTTGAATTTGGTT+GGG | + | 6860:90158-90177 | MS.gene071211:CDS | 35.0% | |
| TTGGAGATGTTGAATTTGGT+TGG | + | 6860:90157-90176 | MS.gene071211:CDS | 35.0% | |
| TTTAATCCACCGTTACCAAA+TGG | + | 6860:89916-89935 | MS.gene071211:CDS | 35.0% | |
| ! | GATAATTGTTCCTTTGGTGT+CGG | - | 6860:89692-89711 | MS.gene071211:intergenic | 35.0% |
| !! | ATAATTGTTCCTTTGGTGTC+GGG | - | 6860:89691-89710 | MS.gene071211:intergenic | 35.0% |
| !!! | ATTGTTTTTGTTGGTGAGGT+GGG | - | 6860:89786-89805 | MS.gene071211:intergenic | 35.0% |
| !!! | TTGGATTGTTTTTGTTGGTG+AGG | - | 6860:89790-89809 | MS.gene071211:intergenic | 35.0% |
| AACCTTCAATCTTACCGGTA+TGG | + | 6860:89596-89615 | MS.gene071211:CDS | 40.0% | |
| AATCTTACCGGTATGGCATA+GGG | + | 6860:89603-89622 | MS.gene071211:CDS | 40.0% | |
| ATCTGTATTGTCAATGCTCG+TGG | + | 6860:89889-89908 | MS.gene071211:CDS | 40.0% | |
| CCGTAGTAACCATTTGGTAA+CGG | - | 6860:89928-89947 | MS.gene071211:intergenic | 40.0% | |
| CCGTTACCAAATGGTTACTA+CGG | + | 6860:89925-89944 | MS.gene071211:CDS | 40.0% | |
| GACTGAAGAAAAAAGAGCGA+TGG | - | 6860:89732-89751 | MS.gene071211:intergenic | 40.0% | |
| GAGATGTTGAATTTGGTTGG+GGG | + | 6860:90160-90179 | MS.gene071211:CDS | 40.0% | |
| GCATTACCGTAGTAACCATT+TGG | - | 6860:89934-89953 | MS.gene071211:intergenic | 40.0% | |
| GCCTTAGGTGAAATTTCTTG+CGG | + | 6860:89565-89584 | MS.gene071211:CDS | 40.0% | |
| GGAGATGTTGAATTTGGTTG+GGG | + | 6860:90159-90178 | MS.gene071211:CDS | 40.0% | |
| TCCGCAAGAAATTTCACCTA+AGG | - | 6860:89569-89588 | MS.gene071211:intergenic | 40.0% | |
| !! | ATTTTCCATTAGTTTCCCGG+CGG | - | 6860:89983-90002 | MS.gene071211:intergenic | 40.0% |
| !! | CGGATTTTCCATTAGTTTCC+CGG | - | 6860:89986-90005 | MS.gene071211:intergenic | 40.0% |
| !! | TAGTAACCATTTGGTAACGG+TGG | - | 6860:89925-89944 | MS.gene071211:intergenic | 40.0% |
| !!! | GATTGTTTTTGTTGGTGAGG+TGG | - | 6860:89787-89806 | MS.gene071211:intergenic | 40.0% |
| !!! | TTTTTTCTTCAGTCCAACCG+AGG | + | 6860:89738-89757 | MS.gene071211:CDS | 40.0% |
| AACTCTAGTGCATACCCCAA+CGG | - | 6860:90006-90025 | MS.gene071211:intergenic | 45.0% | |
| ATAGGGAGCTTCTAAACGCA+AGG | + | 6860:89620-89639 | MS.gene071211:CDS | 45.0% | |
| CAATCTTACCGGTATGGCAT+AGG | + | 6860:89602-89621 | MS.gene071211:CDS | 45.0% | |
| CGATGAGTGCATGTTACTCT+TGG | - | 6860:89652-89671 | MS.gene071211:intergenic | 45.0% | |
| CTCTTTGACGAACTTCTCCA+TGG | - | 6860:90316-90335 | MS.gene071211:intergenic | 45.0% | |
| GCTTGAGCTGGTAAACAAAG+TGG | - | 6860:90294-90313 | MS.gene071211:intergenic | 45.0% | |
| GTCCAATTCATGAGTGCCTT+AGG | + | 6860:89550-89569 | MS.gene071211:CDS | 45.0% | |
| TAGGGAGCTTCTAAACGCAA+GGG | + | 6860:89621-89640 | MS.gene071211:CDS | 45.0% | |
| TGAGTGCATGTTACTCTTGG+TGG | - | 6860:89649-89668 | MS.gene071211:intergenic | 45.0% | |
| TGCCATACCGGTAAGATTGA+AGG | - | 6860:89601-89620 | MS.gene071211:intergenic | 45.0% | |
| TGCGGTGAGGATTTCGAAAT+TGG | - | 6860:89809-89828 | MS.gene071211:intergenic | 45.0% | |
| TGCTAAAGGAGAGGAAGGTT+TGG | + | 6860:90263-90282 | MS.gene071211:CDS | 45.0% | |
| TTGTTTACCAGCTCAAGCCA+TGG | + | 6860:90296-90315 | MS.gene071211:CDS | 45.0% | |
| ! | CACCTAAGGCACTCATGAAT+TGG | - | 6860:89555-89574 | MS.gene071211:intergenic | 45.0% |
| ! | GGGTAGACCACATTTTACTG+TGG | + | 6860:90095-90114 | MS.gene071211:CDS | 45.0% |
| !! | GTATATGGTGGACCAGCTAA+AGG | + | 6860:90189-90208 | MS.gene071211:CDS | 45.0% |
| !!! | GGTTTTGGACCACCAATAGT+AGG | - | 6860:90372-90391 | MS.gene071211:intergenic | 45.0% |
| AAATCCTCACCGCATGCCTT+TGG | + | 6860:89815-89834 | MS.gene071211:CDS | 50.0% | |
| AACTTCTCCATGGCTTGAGC+TGG | - | 6860:90306-90325 | MS.gene071211:intergenic | 50.0% | |
| AGAAGCTCCCTATGCCATAC+CGG | - | 6860:89613-89632 | MS.gene071211:intergenic | 50.0% | |
| CGAACTTCTTCGTCAGTGTC+TGG | - | 6860:89865-89884 | MS.gene071211:intergenic | 50.0% | |
| CGATGGGCCATGTCATCTAA+GGG | - | 6860:89715-89734 | MS.gene071211:intergenic | 50.0% | |
| CGATTGTACGACAACGCCAA+AGG | - | 6860:89834-89853 | MS.gene071211:intergenic | 50.0% | |
| GAACAAGTTCCCGACACCAA+AGG | + | 6860:89679-89698 | MS.gene071211:CDS | 50.0% | |
| GATGGGCCATGTCATCTAAG+GGG | - | 6860:89714-89733 | MS.gene071211:intergenic | 50.0% | |
| GATGTGACACGTGCTGGATT+TGG | + | 6860:90138-90157 | MS.gene071211:CDS | 50.0% | |
| GGTTGGGGGAAAGCTGTATA+TGG | + | 6860:90174-90193 | MS.gene071211:CDS | 50.0% | |
| GTATCTGATGTGACACGTGC+TGG | + | 6860:90132-90151 | MS.gene071211:CDS | 50.0% | |
| TACAACCGCCGGGAAACTAA+TGG | + | 6860:89975-89994 | MS.gene071211:CDS | 50.0% | |
| TGGGGGAAAGCTGTATATGG+TGG | + | 6860:90177-90196 | MS.gene071211:CDS | 50.0% | |
| ! | TGCTTTTGCATTTCCCGTCG+CGG | + | 6860:89951-89970 | MS.gene071211:CDS | 50.0% |
| !! | TATGGTGGACCAGCTAAAGG+AGG | + | 6860:90192-90211 | MS.gene071211:CDS | 50.0% |
| AGCGCGAATTGTGGCTACCT+CGG | - | 6860:89758-89777 | MS.gene071211:intergenic | 55.0% | |
| CGAATTGTGGCTACCTCGGT+TGG | - | 6860:89754-89773 | MS.gene071211:intergenic | 55.0% | |
| GCACCAACTCCTCCTTTAGC+TGG | - | 6860:90204-90223 | MS.gene071211:intergenic | 55.0% | |
| GCGATGGGCCATGTCATCTA+AGG | - | 6860:89716-89735 | MS.gene071211:intergenic | 55.0% | |
| GGACCAGCTAAAGGAGGAGT+TGG | + | 6860:90198-90217 | MS.gene071211:CDS | 55.0% | |
| ! | ACGACAACGCCAAAGGCATG+CGG | - | 6860:89827-89846 | MS.gene071211:intergenic | 55.0% |
| ! | TGGGAGAAGAGCGCGAATTG+TGG | - | 6860:89767-89786 | MS.gene071211:intergenic | 55.0% |
| !! | GGAGGAGTTGGTGCTATACC+TGG | + | 6860:90210-90229 | MS.gene071211:CDS | 55.0% |
| ! | AACGCCAAAGGCATGCGGTG+AGG | - | 6860:89822-89841 | MS.gene071211:intergenic | 60.0% |
| CCCGGCGGTTGTAACCGCGA+CGG | - | 6860:89968-89987 | MS.gene071211:intergenic | 70.0% | |
| CCCGTCGCGGTTACAACCGC+CGG | + | 6860:89964-89983 | MS.gene071211:CDS | 70.0% | |
| CCGGCGGTTGTAACCGCGAC+GGG | - | 6860:89967-89986 | MS.gene071211:intergenic | 70.0% | |
| CCGTCGCGGTTACAACCGCC+GGG | + | 6860:89965-89984 | MS.gene071211:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| 6860 | gene | 89529 | 90416 | 89529 | ID=MS.gene071211 |
| 6860 | mRNA | 89529 | 90416 | 89529 | ID=MS.gene071211.t1;Parent=MS.gene071211 |
| 6860 | exon | 89529 | 90416 | 89529 | ID=MS.gene071211.t1.exon1;Parent=MS.gene071211.t1 |
| 6860 | CDS | 89529 | 90416 | 89529 | ID=cds.MS.gene071211.t1;Parent=MS.gene071211.t1 |
| Gene Sequence |
| Protein sequence |
