AlfalfaGEDB | MS.gene08325

M. sativa cultivar XinJiangDaYe / MS.gene08325

KEGG: -
GO: -
PFAM: PF04576.18

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene08325.t1	RHN42369.1	94.7	895	33	3	1	889	73	959	0.00E+00	1610.1

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene08325.t1	Q9CAC4	36.8	666	273	26	235	889	221	749	1.1e-63	246.5

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene08325.t1	A0A396GMJ9	94.7	895	33	3	1	889	73	959	0.0e+00	1610.1

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049142	MS.gene08325	0.839197	1.83E-57	-1.69E-46
MS.gene049227	MS.gene08325	0.821994	3.00E-53	-1.69E-46
MS.gene049499	MS.gene08325	0.839254	1.77E-57	-1.69E-46
MS.gene049711	MS.gene08325	0.811935	5.46E-51	-1.69E-46
MS.gene049744	MS.gene08325	0.81197	5.36E-51	-1.69E-46
MS.gene049807	MS.gene08325	0.825984	3.48E-54	-1.69E-46
MS.gene049983	MS.gene08325	0.819459	1.15E-52	-1.69E-46
MS.gene050224	MS.gene08325	0.821801	3.33E-53	-1.69E-46
MS.gene050238	MS.gene08325	0.82231	2.54E-53	-1.69E-46
MS.gene050257	MS.gene08325	0.806408	8.35E-50	-1.69E-46

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene08325.t1	MTR_5g078300	48.319	476	197	16	433	884	519	969	3.11e-94	318
MS.gene08325.t1	MTR_1g070350	30.864	405	233	9	491	882	496	866	1.22e-34	143
MS.gene08325.t1	MTR_7g115350	39.773	264	126	7	465	714	481	725	6.53e-32	134
MS.gene08325.t1	MTR_0168s0060	48.592	142	71	1	484	625	290	429	2.38e-22	102
MS.gene08325.t1	MTR_7g107000	44.231	104	58	0	530	633	70	173	4.36e-17	85.5
MS.gene08325.t1	MTR_4g011540	50.515	97	48	0	530	626	289	385	5.02e-16	82.4
MS.gene08325.t1	MTR_4g011550	50.549	91	45	0	534	624	281	371	7.12e-16	82.4
MS.gene08325.t1	MTR_4g107310	56.863	102	44	0	524	625	326	427	4.42e-15	79.3
MS.gene08325.t1	MTR_4g093150	38.000	100	62	0	530	629	76	175	1.03e-14	74.3
MS.gene08325.t1	MTR_1g054835	39.423	104	63	0	530	633	65	168	2.56e-12	70.5

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene08325.t1	AT1G70750	41.642	670	235	27	235	889	221	749	2.23e-105	343
MS.gene08325.t1	AT5G16720	43.765	409	164	11	482	879	310	663	5.31e-77	265
MS.gene08325.t1	AT2G30690	57.724	123	50	2	515	637	602	722	4.59e-29	125
MS.gene08325.t1	AT2G30690	57.724	123	50	2	515	637	602	722	4.59e-29	125
MS.gene08325.t1	AT1G08800	41.423	239	123	6	494	726	862	1089	1.29e-28	124
MS.gene08325.t1	AT1G08800	41.423	239	123	6	494	726	862	1089	1.29e-28	124
MS.gene08325.t1	AT1G08800	41.423	239	123	6	494	726	862	1089	1.29e-28	124
MS.gene08325.t1	AT1G08800	41.423	239	123	6	494	726	862	1089	1.29e-28	124
MS.gene08325.t1	AT1G74830	62.136	103	39	0	523	625	298	400	2.77e-26	114
MS.gene08325.t1	AT1G18990	64.356	101	36	0	523	623	297	397	1.13e-23	106

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Find 138 sgRNAs with CRISPR-Local

Find 184 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACAATGGCAATGATTAAC+AGG	0.343697	4.1:+16740551	MS.gene08325:CDS
AAAGAAAGGGAATGAAACCT+TGG	0.573374	4.1:+16739105	MS.gene08325:CDS
AAAGGTTGGTTTAGAAGAGG+AGG	0.574199	4.1:+16741335	MS.gene08325:CDS
AAATAGATGTGATAAGGTGG+TGG	0.561586	4.1:+16739318	MS.gene08325:CDS
AAATATAACACAGCATCTAC+AGG	0.525131	4.1:-16740913	None:intergenic
AAATCAAAATAGATGTGATA+AGG	0.515683	4.1:+16739312	MS.gene08325:CDS
AAATGTGTCCAAGGTCAATG+AGG	0.633487	4.1:+16739474	MS.gene08325:CDS
AACATCTTCGTGAAGAGAAC+GGG	0.438917	4.1:+16741067	MS.gene08325:CDS
AACATGGAAAGAATGATGAA+TGG	0.512778	4.1:+16739580	MS.gene08325:CDS
AAGCAGAACATGATCAAAGA+AGG	0.576841	4.1:+16738848	MS.gene08325:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAAAAGGTTCATGAGTATG+AGG	+	chr4.1:16740738-16740757	MS.gene08325:CDS	30.0%
AAACAATGGCAATGATTAAC+AGG	+	chr4.1:16740551-16740570	MS.gene08325:CDS	30.0%
AAATATAACACAGCATCTAC+AGG	-	chr4.1:16740916-16740935	None:intergenic	30.0%
AACATGGAAAGAATGATGAA+TGG	+	chr4.1:16739580-16739599	MS.gene08325:CDS	30.0%
AATCATTGCCATTGTTTGAT+TGG	-	chr4.1:16740548-16740567	None:intergenic	30.0%
AATTCCTGATCATGAACAAA+TGG	+	chr4.1:16739815-16739834	MS.gene08325:CDS	30.0%
AGAGAATAAAAATGTGTCCA+AGG	+	chr4.1:16739465-16739484	MS.gene08325:CDS	30.0%
ATATCTATTTCCTTCATCCA+TGG	-	chr4.1:16738671-16738690	None:intergenic	30.0%
ATGTGCCAATTCTCAATTAA+TGG	-	chr4.1:16739412-16739431	None:intergenic	30.0%
ATTGGAACAGAAAACCAATT+TGG	-	chr4.1:16738546-16738565	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr4.1	gene	16738494	16741539	16738494	ID=MS.gene08325
chr4.1	mRNA	16738494	16741539	16738494	ID=MS.gene08325.t1;Parent=MS.gene08325
chr4.1	exon	16738494	16739622	16738494	ID=MS.gene08325.t1.exon1;Parent=MS.gene08325.t1
chr4.1	CDS	16738494	16739622	16738494	ID=cds.MS.gene08325.t1;Parent=MS.gene08325.t1
chr4.1	exon	16739748	16739936	16739748	ID=MS.gene08325.t1.exon2;Parent=MS.gene08325.t1
chr4.1	CDS	16739748	16739936	16739748	ID=cds.MS.gene08325.t1;Parent=MS.gene08325.t1
chr4.1	exon	16740188	16741539	16740188	ID=MS.gene08325.t1.exon3;Parent=MS.gene08325.t1
chr4.1	CDS	16740188	16741539	16740188	ID=cds.MS.gene08325.t1;Parent=MS.gene08325.t1

Gene Sequence

>MS.gene08325

ATGAATCCTTGTAGAGATCTTGTGTGTGAAGCTCATGCTGTTGAGATTTCCAAATTGGTTTTCTGTTCCAATCATCACAAACTAGCTGAATCAGATGATATGTGTGAGGATTGTTCATCTTCATTTTCATTCAAACCAAATTATGTCAAACTTTCTCAAAGTTTAGATGTTTTTCCATGGATGAAGGAAATAGATATGATTAATGGTGCTGATGGAAAGGGAATTGAGAAAGTTGAAGAGGGTTTGAGATGTTCTTGCTGTGGTGTTACTGTTAACTTTGATAACAGATTCTACCCTCCTTGCATTGTTATTGATCATTCTATGAACATTTTGGATTATGAACAGAACTCACAGAAGCAGAACATGATCAAAGAAGGTGTGTTTGTCTCAGAAGATGATCATCAGTCAGATCAAAGCAGATCATATTTTGAACTTGATCATCATGAAAATCAACAAAACATTGAAGAAAACAGTGGAATTCATATGTTGTTTGAGGTTGAACATGATTCAGGTACAAAAAAAGTGGAGGCAGAAGAGAATTGTGCTTGTTCTGTTTGTGATGGTGTCAAGGAAACTATGGTTGATGATCTTTACAAGCTTGAATTTGGTGTAAAGAAAGGGAATGAAACCTTGGAAGAGGAAACTTTGAGATTGAATGTTCCAAAGGCTCAGGATGATGATCAAGCTTGTGACAAGACTACTGTTGAAGTTGAGAAAACTGAGGAAATTCCACCTAAACATCTTGAATTTTTCATTCATGGTGATGATTGCAGTTTGATTCCTGTTGAATTGGTTGAATCCACTGCCACAGAAAATGGAAATCAAAATAGATGTGATAAGGTGGTGGAGGAAGGGTTTAAGGAGAGTGAAGATTTTATTCTGGATTTTGGTATGAGTACTGATGCAGAAGCCGAACCATTAATTGAGAATTGGCACATTTCTGGTGATATTGTGGCAGAATTTTCATGTCAAGAGAATAAAAATGTGTCCAAGGTCAATGAGGTTGAATCAGATCAATTGAATTTTCAAGATGTGAGGTTTTCTCAAATGGATGAAGAATTCCATAAGCATGATAATGTTGAAGTAAACATGGAAAGAATGATGAATGGATATTTTGATGGAGAACTAGGTTCATATGTTTCTCTAGGTTGTTATAATTTTGCTTCTTAACAATTCCACTCATTTTATATATTATTGTTTTTGTGATTTTTTATATGCAGTCATTGATCTAATATACTTTATTTATACTTGCAGCTTCTGATGATGCATCACAAACTCAAGGTGAGGAGGAATATGAAGCAGAAGTATCAATTGGAACTGAAATTCCTGATCATGAACAAATGGATGAGTATCAAGGCCAGGATATTCTTTCGGATACAAATCAACGAATGCAAGAAGATTCATCTACTAGCTCAGTCAGGTTTAATGCCCAACATGATAGTGGTAAGCCTCAATTTATTGTCTTCCTTTTACCTCAAATCCATGCATAGAACCATGATTTTAAATCGAGGTTGCAGTCGCAGACCTTTATAATGTTGGCAAATGTAGCCGATGCGACTACATTTGCAGTTGTGATGCCTCTAAAACATTTTTATTGGGGCTGTAATTTAGAACCATGTTTAGAACTTTCTAATTACATAAGCTGAATTTATTTTTTCATATTTTTAAAATAAAAATTTGCAATGTGTAATTAGGTCATGACAGAGATGATGAAGAGTTTGTAGAATTTAAAACCATGTCACTTGAATTAAGAATGCCAACAGCAAGTAACCATATGCCTTCATCTTTGGAGCTTAATGAGAATGAAGAGGAAAAAATTCCCGACACACCGACTTCTCCGGAGAGTCTTCATCAACTACATAAGAAACTACTTTTTCTCGAGAGGAAAGGGTCAGGAACAGAAGATTCATTGGATGGAAGTGTAATAGGCGACATAGAATGTGGTGACGTGACCTTCGAGGAGTTAAAATCCGCATTGAAATCTGAAAGGAAGGCTTTGAAAACACTATATGCAGAGCTAGAAGAAGAAAGAAATGCATCTGCTGTAGCAGCCAATCAAACAATGGCAATGATTAACAGGCTTCAAGAAGAGAAAGCAGCAATGCAGATGGAAGCTTTGCAGTATCAGAGAATGATGGATGAACAATCCGAGTACGATCAAGAGGCTATGCAGATTTTGAATGATCTTATATTGAAGAGGGAGAAAGAGAAGCATGAGCTAGAAAAAGAGCTTGAAGTATATAGAAAAAAGGTTCATGAGTATGAGGTAAGAGAAAAGATTTTGTCAAGAAGAGATAGTAGCATAAGAAGCAGAACTTCATCTCCTTCTTGTAGCAACGCTGAGGATAGTGATGGGTTGTCTATTGATTTCAATCAAGAATCAAAAGAAGAAAATGGTTTTCATAGCAACCAGAACACTCCTGTAGATGCTGTGTTATATTTGGAGGAATCATTGTCAAATTTTGAGGAAGAGAGGTTATCAATACTAGAACAGCTGAAAGTATTGGAAGAAAAGCTAATTATATTGAATTATGAAGATGAAGGACACTGCTTTGATGATACTGTATCGATAGAACATCTTCGTGAAGAGAACGGGAATGGATATCATGATCACGATCATGACGATCATGATGATTTCCAAGGTCATGTAAATGGATTTGCAAATGGTAATGGAAAGCATCATCAAGGAAGGAAAGTCTTGGCTACTAAAGCAAAGAGGCTTCTACCACTTTTTGATGCAATCAGTACCGAAGAAGATGTAGAGTTGAGTGGAGATGAACATGAATTAGACTTTTCTCAGTTGCAAAATGTTTCAGCTGAAAAGACCAATTTGGATAACAAAAAGGTTGGTTTAGAAGAGGAGGTGGATCATGTTTATGAGAGACTACAAGTTTTGGAGGCAGATAGAGAGTTTCTGAAGCATTGTATCAGCTCATTGAGAAAAGGGGATAAAGGGTTAGATCTTCTTCAAGAAATTTTACAACATCTACGTGATTTGAGGAATGTGGAACTCAGAGTCAGGAACATAGGAGATCTTGCGGTGTAA

Protein sequence

>MS.gene08325.t1

MNPCRDLVCEAHAVEISKLVFCSNHHKLAESDDMCEDCSSSFSFKPNYVKLSQSLDVFPWMKEIDMINGADGKGIEKVEEGLRCSCCGVTVNFDNRFYPPCIVIDHSMNILDYEQNSQKQNMIKEGVFVSEDDHQSDQSRSYFELDHHENQQNIEENSGIHMLFEVEHDSGTKKVEAEENCACSVCDGVKETMVDDLYKLEFGVKKGNETLEEETLRLNVPKAQDDDQACDKTTVEVEKTEEIPPKHLEFFIHGDDCSLIPVELVESTATENGNQNRCDKVVEEGFKESEDFILDFGMSTDAEAEPLIENWHISGDIVAEFSCQENKNVSKVNEVESDQLNFQDVRFSQMDEEFHKHDNVEVNMERMMNGYFDGELASDDASQTQGEEEYEAEVSIGTEIPDHEQMDEYQGQDILSDTNQRMQEDSSTSSVRFNAQHDSGHDRDDEEFVEFKTMSLELRMPTASNHMPSSLELNENEEEKIPDTPTSPESLHQLHKKLLFLERKGSGTEDSLDGSVIGDIECGDVTFEELKSALKSERKALKTLYAELEEERNASAVAANQTMAMINRLQEEKAAMQMEALQYQRMMDEQSEYDQEAMQILNDLILKREKEKHELEKELEVYRKKVHEYEVREKILSRRDSSIRSRTSSPSCSNAEDSDGLSIDFNQESKEENGFHSNQNTPVDAVLYLEESLSNFEEERLSILEQLKVLEEKLIILNYEDEGHCFDDTVSIEHLREENGNGYHDHDHDDHDDFQGHVNGFANGNGKHHQGRKVLATKAKRLLPLFDAISTEEDVELSGDEHELDFSQLQNVSAEKTNLDNKKVGLEEEVDHVYERLQVLEADREFLKHCISSLRKGDKGLDLLQEILQHLRDLRNVELRVRNIGDLAV