Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene08325.t1 | RHN42369.1 | 94.7 | 895 | 33 | 3 | 1 | 889 | 73 | 959 | 0.00E+00 | 1610.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene08325.t1 | Q9CAC4 | 36.8 | 666 | 273 | 26 | 235 | 889 | 221 | 749 | 1.1e-63 | 246.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene08325.t1 | A0A396GMJ9 | 94.7 | 895 | 33 | 3 | 1 | 889 | 73 | 959 | 0.0e+00 | 1610.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049142 | MS.gene08325 | 0.839197 | 1.83E-57 | -1.69E-46 |
| MS.gene049227 | MS.gene08325 | 0.821994 | 3.00E-53 | -1.69E-46 |
| MS.gene049499 | MS.gene08325 | 0.839254 | 1.77E-57 | -1.69E-46 |
| MS.gene049711 | MS.gene08325 | 0.811935 | 5.46E-51 | -1.69E-46 |
| MS.gene049744 | MS.gene08325 | 0.81197 | 5.36E-51 | -1.69E-46 |
| MS.gene049807 | MS.gene08325 | 0.825984 | 3.48E-54 | -1.69E-46 |
| MS.gene049983 | MS.gene08325 | 0.819459 | 1.15E-52 | -1.69E-46 |
| MS.gene050224 | MS.gene08325 | 0.821801 | 3.33E-53 | -1.69E-46 |
| MS.gene050238 | MS.gene08325 | 0.82231 | 2.54E-53 | -1.69E-46 |
| MS.gene050257 | MS.gene08325 | 0.806408 | 8.35E-50 | -1.69E-46 |
| MS.gene050258 | MS.gene08325 | 0.812401 | 4.32E-51 | -1.69E-46 |
| MS.gene050348 | MS.gene08325 | 0.802568 | 5.27E-49 | -1.69E-46 |
| MS.gene050414 | MS.gene08325 | 0.824149 | 9.44E-54 | -1.69E-46 |
| MS.gene050551 | MS.gene08325 | 0.814904 | 1.21E-51 | -1.69E-46 |
| MS.gene050646 | MS.gene08325 | 0.82949 | 5.00E-55 | -1.69E-46 |
| MS.gene050657 | MS.gene08325 | 0.807538 | 4.81E-50 | -1.69E-46 |
| MS.gene051279 | MS.gene08325 | 0.835571 | 1.55E-56 | -1.69E-46 |
| MS.gene051800 | MS.gene08325 | 0.816106 | 6.56E-52 | -1.69E-46 |
| MS.gene051852 | MS.gene08325 | 0.818427 | 1.97E-52 | -1.69E-46 |
| MS.gene052016 | MS.gene08325 | 0.852167 | 5.51E-61 | -1.69E-46 |
| MS.gene052037 | MS.gene08325 | 0.812666 | 3.78E-51 | -1.69E-46 |
| MS.gene052118 | MS.gene08325 | 0.836851 | 7.34E-57 | -1.69E-46 |
| MS.gene052307 | MS.gene08325 | 0.848536 | 5.76E-60 | -1.69E-46 |
| MS.gene052463 | MS.gene08325 | 0.825774 | 3.90E-54 | -1.69E-46 |
| MS.gene052609 | MS.gene08325 | 0.847855 | 8.88E-60 | -1.69E-46 |
| MS.gene052681 | MS.gene08325 | 0.803655 | 3.14E-49 | -1.69E-46 |
| MS.gene053079 | MS.gene08325 | 0.808749 | 2.66E-50 | -1.69E-46 |
| MS.gene053143 | MS.gene08325 | 0.80358 | 3.26E-49 | -1.69E-46 |
| MS.gene054178 | MS.gene08325 | 0.841325 | 5.09E-58 | -1.69E-46 |
| MS.gene054489 | MS.gene08325 | 0.807473 | 4.97E-50 | -1.69E-46 |
| MS.gene05454 | MS.gene08325 | 0.821082 | 4.88E-53 | -1.69E-46 |
| MS.gene054576 | MS.gene08325 | 0.802117 | 6.53E-49 | -1.69E-46 |
| MS.gene054641 | MS.gene08325 | 0.873469 | 1.44E-67 | -1.69E-46 |
| MS.gene054651 | MS.gene08325 | 0.812351 | 4.43E-51 | -1.69E-46 |
| MS.gene054892 | MS.gene08325 | 0.831127 | 1.99E-55 | -1.69E-46 |
| MS.gene054893 | MS.gene08325 | 0.833027 | 6.75E-56 | -1.69E-46 |
| MS.gene05539 | MS.gene08325 | 0.823793 | 1.14E-53 | -1.69E-46 |
| MS.gene055469 | MS.gene08325 | 0.805455 | 1.32E-49 | -1.69E-46 |
| MS.gene055513 | MS.gene08325 | 0.82758 | 1.45E-54 | -1.69E-46 |
| MS.gene055864 | MS.gene08325 | 0.825728 | 4.00E-54 | -1.69E-46 |
| MS.gene056507 | MS.gene08325 | 0.827754 | 1.31E-54 | -1.69E-46 |
| MS.gene056519 | MS.gene08325 | 0.811301 | 7.50E-51 | -1.69E-46 |
| MS.gene056677 | MS.gene08325 | 0.826795 | 2.23E-54 | -1.69E-46 |
| MS.gene056699 | MS.gene08325 | 0.807243 | 5.56E-50 | -1.69E-46 |
| MS.gene05686 | MS.gene08325 | 0.844468 | 7.42E-59 | -1.69E-46 |
| MS.gene057034 | MS.gene08325 | 0.800492 | 1.41E-48 | -1.69E-46 |
| MS.gene057174 | MS.gene08325 | 0.80571 | 1.17E-49 | -1.69E-46 |
| MS.gene058010 | MS.gene08325 | 0.835629 | 1.50E-56 | -1.69E-46 |
| MS.gene058289 | MS.gene08325 | 0.815359 | 9.63E-52 | -1.69E-46 |
| MS.gene058292 | MS.gene08325 | 0.804203 | 2.42E-49 | -1.69E-46 |
| MS.gene058429 | MS.gene08325 | 0.818041 | 2.41E-52 | -1.69E-46 |
| MS.gene058649 | MS.gene08325 | 0.800307 | 1.53E-48 | -1.69E-46 |
| MS.gene058781 | MS.gene08325 | 0.816282 | 5.99E-52 | -1.69E-46 |
| MS.gene059170 | MS.gene08325 | 0.827253 | 1.73E-54 | -1.69E-46 |
| MS.gene059439 | MS.gene08325 | 0.830463 | 2.90E-55 | -1.69E-46 |
| MS.gene05952 | MS.gene08325 | 0.80556 | 1.26E-49 | -1.69E-46 |
| MS.gene059570 | MS.gene08325 | 0.810969 | 8.85E-51 | -1.69E-46 |
| MS.gene059634 | MS.gene08325 | 0.817447 | 3.28E-52 | -1.69E-46 |
| MS.gene060435 | MS.gene08325 | 0.82441 | 8.20E-54 | -1.69E-46 |
| MS.gene060522 | MS.gene08325 | 0.839839 | 1.25E-57 | -1.69E-46 |
| MS.gene06052 | MS.gene08325 | 0.840206 | 1.00E-57 | -1.69E-46 |
| MS.gene060777 | MS.gene08325 | 0.803098 | 4.10E-49 | -1.69E-46 |
| MS.gene060785 | MS.gene08325 | 0.8628 | 3.92E-64 | -1.69E-46 |
| MS.gene060932 | MS.gene08325 | 0.818662 | 1.74E-52 | -1.69E-46 |
| MS.gene060933 | MS.gene08325 | 0.829638 | 4.60E-55 | -1.69E-46 |
| MS.gene060935 | MS.gene08325 | 0.801587 | 8.39E-49 | -1.69E-46 |
| MS.gene060937 | MS.gene08325 | 0.819726 | 9.98E-53 | -1.69E-46 |
| MS.gene061100 | MS.gene08325 | 0.851888 | 6.62E-61 | -1.69E-46 |
| MS.gene061188 | MS.gene08325 | 0.818922 | 1.52E-52 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene08325.t1 | MTR_5g078300 | 48.319 | 476 | 197 | 16 | 433 | 884 | 519 | 969 | 3.11e-94 | 318 |
| MS.gene08325.t1 | MTR_1g070350 | 30.864 | 405 | 233 | 9 | 491 | 882 | 496 | 866 | 1.22e-34 | 143 |
| MS.gene08325.t1 | MTR_7g115350 | 39.773 | 264 | 126 | 7 | 465 | 714 | 481 | 725 | 6.53e-32 | 134 |
| MS.gene08325.t1 | MTR_0168s0060 | 48.592 | 142 | 71 | 1 | 484 | 625 | 290 | 429 | 2.38e-22 | 102 |
| MS.gene08325.t1 | MTR_7g107000 | 44.231 | 104 | 58 | 0 | 530 | 633 | 70 | 173 | 4.36e-17 | 85.5 |
| MS.gene08325.t1 | MTR_4g011540 | 50.515 | 97 | 48 | 0 | 530 | 626 | 289 | 385 | 5.02e-16 | 82.4 |
| MS.gene08325.t1 | MTR_4g011550 | 50.549 | 91 | 45 | 0 | 534 | 624 | 281 | 371 | 7.12e-16 | 82.4 |
| MS.gene08325.t1 | MTR_4g107310 | 56.863 | 102 | 44 | 0 | 524 | 625 | 326 | 427 | 4.42e-15 | 79.3 |
| MS.gene08325.t1 | MTR_4g093150 | 38.000 | 100 | 62 | 0 | 530 | 629 | 76 | 175 | 1.03e-14 | 74.3 |
| MS.gene08325.t1 | MTR_1g054835 | 39.423 | 104 | 63 | 0 | 530 | 633 | 65 | 168 | 2.56e-12 | 70.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene08325.t1 | AT1G70750 | 41.642 | 670 | 235 | 27 | 235 | 889 | 221 | 749 | 2.23e-105 | 343 |
| MS.gene08325.t1 | AT5G16720 | 43.765 | 409 | 164 | 11 | 482 | 879 | 310 | 663 | 5.31e-77 | 265 |
| MS.gene08325.t1 | AT2G30690 | 57.724 | 123 | 50 | 2 | 515 | 637 | 602 | 722 | 4.59e-29 | 125 |
| MS.gene08325.t1 | AT2G30690 | 57.724 | 123 | 50 | 2 | 515 | 637 | 602 | 722 | 4.59e-29 | 125 |
| MS.gene08325.t1 | AT1G08800 | 41.423 | 239 | 123 | 6 | 494 | 726 | 862 | 1089 | 1.29e-28 | 124 |
| MS.gene08325.t1 | AT1G08800 | 41.423 | 239 | 123 | 6 | 494 | 726 | 862 | 1089 | 1.29e-28 | 124 |
| MS.gene08325.t1 | AT1G08800 | 41.423 | 239 | 123 | 6 | 494 | 726 | 862 | 1089 | 1.29e-28 | 124 |
| MS.gene08325.t1 | AT1G08800 | 41.423 | 239 | 123 | 6 | 494 | 726 | 862 | 1089 | 1.29e-28 | 124 |
| MS.gene08325.t1 | AT1G74830 | 62.136 | 103 | 39 | 0 | 523 | 625 | 298 | 400 | 2.77e-26 | 114 |
| MS.gene08325.t1 | AT1G18990 | 64.356 | 101 | 36 | 0 | 523 | 623 | 297 | 397 | 1.13e-23 | 106 |
| MS.gene08325.t1 | AT4G13630 | 47.541 | 122 | 59 | 1 | 514 | 630 | 204 | 325 | 1.41e-20 | 97.4 |
| MS.gene08325.t1 | AT4G13630 | 47.541 | 122 | 59 | 1 | 514 | 630 | 204 | 325 | 1.41e-20 | 97.4 |
| MS.gene08325.t1 | AT3G54740 | 37.430 | 179 | 95 | 4 | 504 | 670 | 5 | 178 | 5.92e-19 | 90.5 |
| MS.gene08325.t1 | AT3G54740 | 37.430 | 179 | 95 | 4 | 504 | 670 | 5 | 178 | 5.92e-19 | 90.5 |
| MS.gene08325.t1 | AT3G54740 | 37.430 | 179 | 95 | 4 | 504 | 670 | 5 | 178 | 5.92e-19 | 90.5 |
| MS.gene08325.t1 | AT3G54740 | 37.430 | 179 | 95 | 4 | 504 | 670 | 5 | 178 | 5.92e-19 | 90.5 |
| MS.gene08325.t1 | AT3G54740 | 37.430 | 179 | 95 | 4 | 504 | 670 | 53 | 226 | 6.59e-19 | 90.9 |
| MS.gene08325.t1 | AT3G54740 | 37.430 | 179 | 95 | 4 | 504 | 670 | 53 | 226 | 6.59e-19 | 90.9 |
| MS.gene08325.t1 | AT3G54740 | 37.430 | 179 | 95 | 4 | 504 | 670 | 53 | 226 | 6.59e-19 | 90.9 |
| MS.gene08325.t1 | AT3G54740 | 37.430 | 179 | 95 | 4 | 504 | 670 | 53 | 226 | 6.59e-19 | 90.9 |
| MS.gene08325.t1 | AT1G04890 | 49.123 | 114 | 56 | 1 | 511 | 624 | 97 | 208 | 5.28e-18 | 87.8 |
| MS.gene08325.t1 | AT4G13160 | 54.255 | 94 | 43 | 0 | 530 | 623 | 117 | 210 | 2.69e-16 | 80.9 |
| MS.gene08325.t1 | AT5G06560 | 38.710 | 124 | 69 | 1 | 527 | 643 | 71 | 194 | 2.87e-16 | 83.6 |
| MS.gene08325.t1 | AT4G30830 | 41.237 | 97 | 57 | 0 | 530 | 626 | 18 | 114 | 5.10e-12 | 68.9 |
| MS.gene08325.t1 | AT4G30830 | 41.237 | 97 | 57 | 0 | 530 | 626 | 18 | 114 | 5.10e-12 | 68.9 |
Find 138 sgRNAs with CRISPR-Local
Find 184 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGATCATTCTATGAACATTT+TGG | 0.131796 | 4.1:+16738805 | MS.gene08325:CDS |
| GGTGGTGGAGGAAGGGTTTA+AGG | 0.150734 | 4.1:+16739333 | MS.gene08325:CDS |
| ATTGAGAATTGGCACATTTC+TGG | 0.155393 | 4.1:+16739415 | MS.gene08325:CDS |
| TGAGAAAGTTTGACATAATT+TGG | 0.160478 | 4.1:-16738629 | None:intergenic |
| GATTTCCAAGGTCATGTAAA+TGG | 0.210463 | 4.1:+16741126 | MS.gene08325:CDS |
| ATGTGCCAATTCTCAATTAA+TGG | 0.212111 | 4.1:-16739409 | None:intergenic |
| CTTCAACATTATCATGCTTA+TGG | 0.213927 | 4.1:-16739555 | None:intergenic |
| TGCTGTTGAGATTTCCAAAT+TGG | 0.222106 | 4.1:+16738529 | MS.gene08325:CDS |
| GAATCCACTGCCACAGAAAA+TGG | 0.228593 | 4.1:+16739289 | MS.gene08325:CDS |
| ATTGGAACAGAAAACCAATT+TGG | 0.241967 | 4.1:-16738543 | None:intergenic |
| TAACCATATGCCTTCATCTT+TGG | 0.254980 | 4.1:+16740261 | MS.gene08325:CDS |
| TGTAGATGCTGTGTTATATT+TGG | 0.255018 | 4.1:+16740915 | MS.gene08325:CDS |
| TTCAGCTGAAAAGACCAATT+TGG | 0.270275 | 4.1:+16741305 | MS.gene08325:CDS |
| GATCTTTACAAGCTTGAATT+TGG | 0.276454 | 4.1:+16739079 | MS.gene08325:CDS |
| GACCAATTTGGATAACAAAA+AGG | 0.301928 | 4.1:+16741317 | MS.gene08325:CDS |
| TTTGAGGTTGAACATGATTC+AGG | 0.302213 | 4.1:+16738983 | MS.gene08325:CDS |
| TCATTGGATGGAAGTGTAAT+AGG | 0.334923 | 4.1:+16740400 | MS.gene08325:CDS |
| AATCATTGCCATTGTTTGAT+TGG | 0.338660 | 4.1:-16740545 | None:intergenic |
| AAACAATGGCAATGATTAAC+AGG | 0.343697 | 4.1:+16740551 | MS.gene08325:CDS |
| AAGGAAATAGATATGATTAA+TGG | 0.355425 | 4.1:+16738677 | MS.gene08325:CDS |
| TTATGAGAGACTACAAGTTT+TGG | 0.357126 | 4.1:+16741368 | MS.gene08325:CDS |
| CAAGAATCAAAAGAAGAAAA+TGG | 0.358623 | 4.1:+16740868 | MS.gene08325:CDS |
| TTCAGCTAGTTTGTGATGAT+TGG | 0.359303 | 4.1:-16738561 | None:intergenic |
| TGATCATCATCCTGAGCCTT+TGG | 0.368054 | 4.1:-16739154 | None:intergenic |
| TCATTGAGAAAAGGGGATAA+AGG | 0.370415 | 4.1:+16741426 | MS.gene08325:CDS |
| CCAATTCTCAATTAATGGTT+CGG | 0.375649 | 4.1:-16739404 | None:intergenic |
| CAGTTTGATTCCTGTTGAAT+TGG | 0.375927 | 4.1:+16739264 | MS.gene08325:CDS |
| CCGAACCATTAATTGAGAAT+TGG | 0.389801 | 4.1:+16739404 | MS.gene08325:CDS |
| CTTGAATTTGGTGTAAAGAA+AGG | 0.400903 | 4.1:+16739091 | MS.gene08325:CDS |
| TCATCCATTTGTTCATGATC+AGG | 0.416480 | 4.1:-16739819 | None:intergenic |
| TATGAAGCAGAAGTATCAAT+TGG | 0.425288 | 4.1:+16739786 | MS.gene08325:CDS |
| CAGCATCTACAGGAGTGTTC+TGG | 0.425690 | 4.1:-16740903 | None:intergenic |
| TCCGGAGAAGTCGGTGTGTC+GGG | 0.425794 | 4.1:-16740313 | None:intergenic |
| TCAAGGCCAGGATATTCTTT+CGG | 0.427039 | 4.1:+16739845 | MS.gene08325:CDS |
| TGATGGTGTCAAGGAAACTA+TGG | 0.430020 | 4.1:+16739051 | MS.gene08325:CDS |
| CATTGAGAAAAGGGGATAAA+GGG | 0.434221 | 4.1:+16741427 | MS.gene08325:CDS |
| TACAACATCTACGTGATTTG+AGG | 0.434349 | 4.1:+16741472 | MS.gene08325:CDS |
| CAAATCCATTTACATGACCT+TGG | 0.434429 | 4.1:-16741131 | None:intergenic |
| TTGAATTTGGTGTAAAGAAA+GGG | 0.435192 | 4.1:+16739092 | MS.gene08325:CDS |
| AACATCTTCGTGAAGAGAAC+GGG | 0.438917 | 4.1:+16741067 | MS.gene08325:CDS |
| GTATCAGCTCATTGAGAAAA+GGG | 0.444188 | 4.1:+16741418 | MS.gene08325:CDS |
| TGTGATAAGGTGGTGGAGGA+AGG | 0.445212 | 4.1:+16739325 | MS.gene08325:CDS |
| GTCAGGAACAGAAGATTCAT+TGG | 0.455379 | 4.1:+16740384 | MS.gene08325:CDS |
| GGGAATTGAGAAAGTTGAAG+AGG | 0.456395 | 4.1:+16738712 | MS.gene08325:CDS |
| GGTTGGTTTAGAAGAGGAGG+TGG | 0.457431 | 4.1:+16741338 | MS.gene08325:CDS |
| GTGGATTCAACCAATTCAAC+AGG | 0.460558 | 4.1:-16739274 | None:intergenic |
| CATGTAAATGGATTTGCAAA+TGG | 0.462247 | 4.1:+16741138 | MS.gene08325:CDS |
| ACTCAACTCTACATCTTCTT+CGG | 0.465186 | 4.1:-16741241 | None:intergenic |
| AGGCTTACCACTATCATGTT+GGG | 0.473913 | 4.1:-16739922 | None:intergenic |
| AATGGATTTGCAAATGGTAA+TGG | 0.475509 | 4.1:+16741144 | MS.gene08325:CDS |
| TGTATCAGCTCATTGAGAAA+AGG | 0.475886 | 4.1:+16741417 | MS.gene08325:CDS |
| CATAGCCTCTTGATCGTACT+CGG | 0.476563 | 4.1:-16740641 | None:intergenic |
| ATATCTATTTCCTTCATCCA+TGG | 0.485123 | 4.1:-16738668 | None:intergenic |
| GCTCCAAAGATGAAGGCATA+TGG | 0.485262 | 4.1:-16740264 | None:intergenic |
| TCTCAAAGTTTCCTCTTCCA+AGG | 0.486049 | 4.1:-16739122 | None:intergenic |
| AATTCCTGATCATGAACAAA+TGG | 0.488142 | 4.1:+16739815 | MS.gene08325:CDS |
| ACTAGAACAGCTGAAAGTAT+TGG | 0.499006 | 4.1:+16740978 | MS.gene08325:CDS |
| GAATGATCTTATATTGAAGA+GGG | 0.501695 | 4.1:+16740672 | MS.gene08325:CDS |
| CATTCTTAATTCAAGTGACA+TGG | 0.503402 | 4.1:-16740227 | None:intergenic |
| TGTGCTTGTTCTGTTTGTGA+TGG | 0.503760 | 4.1:+16739034 | MS.gene08325:CDS |
| TGGAATTCATATGTTGTTTG+AGG | 0.507732 | 4.1:+16738967 | MS.gene08325:CDS |
| GGAATTGAGAAAGTTGAAGA+GGG | 0.509648 | 4.1:+16738713 | MS.gene08325:CDS |
| AACATGGAAAGAATGATGAA+TGG | 0.512778 | 4.1:+16739580 | MS.gene08325:CDS |
| TGATTCAACCTCATTGACCT+TGG | 0.513718 | 4.1:-16739482 | None:intergenic |
| GAACAAATGGATGAGTATCA+AGG | 0.515576 | 4.1:+16739828 | MS.gene08325:CDS |
| AAATCAAAATAGATGTGATA+AGG | 0.515683 | 4.1:+16739312 | MS.gene08325:CDS |
| TTTAATGCCCAACATGATAG+TGG | 0.517123 | 4.1:+16739915 | MS.gene08325:CDS |
| ATTCATCTACTAGCTCAGTC+AGG | 0.517217 | 4.1:+16739892 | MS.gene08325:CDS |
| TTTCTCGAGAGGAAAGGGTC+AGG | 0.520344 | 4.1:+16740367 | MS.gene08325:CDS |
| GGCATATGGTTACTTGCTGT+TGG | 0.523409 | 4.1:-16740250 | None:intergenic |
| GAGGCTTACCACTATCATGT+TGG | 0.523454 | 4.1:-16739923 | None:intergenic |
| AAATATAACACAGCATCTAC+AGG | 0.525131 | 4.1:-16740913 | None:intergenic |
| TTTGAGATTGAATGTTCCAA+AGG | 0.527554 | 4.1:+16739138 | MS.gene08325:CDS |
| TAGATGTGATAAGGTGGTGG+AGG | 0.527709 | 4.1:+16739321 | MS.gene08325:CDS |
| ATTGAATGTTCCAAAGGCTC+AGG | 0.527773 | 4.1:+16739144 | MS.gene08325:CDS |
| AGGGAATGAAACCTTGGAAG+AGG | 0.530134 | 4.1:+16739111 | MS.gene08325:CDS |
| ATTAATGGTGCTGATGGAAA+GGG | 0.530637 | 4.1:+16738692 | MS.gene08325:CDS |
| TCCCGACACACCGACTTCTC+CGG | 0.530703 | 4.1:+16740312 | MS.gene08325:CDS |
| TGTAGTTGATGAAGACTCTC+CGG | 0.531114 | 4.1:-16740331 | None:intergenic |
| CTTCGTGAAGAGAACGGGAA+TGG | 0.531529 | 4.1:+16741072 | MS.gene08325:CDS |
| GGAATGTGGAACTCAGAGTC+AGG | 0.532375 | 4.1:+16741493 | MS.gene08325:CDS |
| CTCCGGAGAAGTCGGTGTGT+CGG | 0.535211 | 4.1:-16740314 | None:intergenic |
| CGCATTGAAATCTGAAAGGA+AGG | 0.536176 | 4.1:+16740465 | MS.gene08325:CDS |
| TTCTGTTTGTGATGGTGTCA+AGG | 0.536392 | 4.1:+16739042 | MS.gene08325:CDS |
| GATATGATTAATGGTGCTGA+TGG | 0.537087 | 4.1:+16738686 | MS.gene08325:CDS |
| TCCTCAGCGTTGCTACAAGA+AGG | 0.546661 | 4.1:-16740817 | None:intergenic |
| GTGATAAGGTGGTGGAGGAA+GGG | 0.547154 | 4.1:+16739326 | MS.gene08325:CDS |
| TCAAAATAGATGTGATAAGG+TGG | 0.548904 | 4.1:+16739315 | MS.gene08325:CDS |
| GGAACAGAAGATTCATTGGA+TGG | 0.549334 | 4.1:+16740388 | MS.gene08325:CDS |
| GATTAATGGTGCTGATGGAA+AGG | 0.550398 | 4.1:+16738691 | MS.gene08325:CDS |
| AATGGATGAGTATCAAGGCC+AGG | 0.550806 | 4.1:+16739833 | MS.gene08325:CDS |
| ATGTGGTGACGTGACCTTCG+AGG | 0.551592 | 4.1:+16740432 | MS.gene08325:CDS |
| TGAATGATCTTATATTGAAG+AGG | 0.551934 | 4.1:+16740671 | MS.gene08325:CDS |
| AGAGAAAGCAGCAATGCAGA+TGG | 0.554976 | 4.1:+16740582 | MS.gene08325:CDS |
| GAACATCTTCGTGAAGAGAA+CGG | 0.557301 | 4.1:+16741066 | MS.gene08325:CDS |
| TCATTAAGCTCCAAAGATGA+AGG | 0.560251 | 4.1:-16740271 | None:intergenic |
| GAACTCAGAGTCAGGAACAT+AGG | 0.561039 | 4.1:+16741501 | MS.gene08325:CDS |
| AAATAGATGTGATAAGGTGG+TGG | 0.561586 | 4.1:+16739318 | MS.gene08325:CDS |
| ATATTGAATTATGAAGATGA+AGG | 0.565833 | 4.1:+16741015 | MS.gene08325:CDS |
| GGAGCTTAATGAGAATGAAG+AGG | 0.572531 | 4.1:+16740282 | MS.gene08325:CDS |
| AAAGAAAGGGAATGAAACCT+TGG | 0.573374 | 4.1:+16739105 | MS.gene08325:CDS |
| AAAGGTTGGTTTAGAAGAGG+AGG | 0.574199 | 4.1:+16741335 | MS.gene08325:CDS |
| AAGCAGAACATGATCAAAGA+AGG | 0.576841 | 4.1:+16738848 | MS.gene08325:CDS |
| TCATCAAGGAAGGAAAGTCT+TGG | 0.580300 | 4.1:+16741173 | MS.gene08325:CDS |
| GAATGATCAATAACAATGCA+AGG | 0.581504 | 4.1:-16738791 | None:intergenic |
| AGATGCTGTGTTATATTTGG+AGG | 0.584225 | 4.1:+16740918 | MS.gene08325:CDS |
| TTGTATCCGAAAGAATATCC+TGG | 0.587704 | 4.1:-16739851 | None:intergenic |
| GGTAATGGAAAGCATCATCA+AGG | 0.588406 | 4.1:+16741159 | MS.gene08325:CDS |
| GCACATTTCTGGTGATATTG+TGG | 0.590921 | 4.1:+16739426 | MS.gene08325:CDS |
| ATGGAAAGCATCATCAAGGA+AGG | 0.594579 | 4.1:+16741163 | MS.gene08325:CDS |
| GATCAATAACAATGCAAGGA+GGG | 0.594685 | 4.1:-16738787 | None:intergenic |
| GAAGAAGATGTAGAGTTGAG+TGG | 0.596653 | 4.1:+16741243 | MS.gene08325:CDS |
| TGAAGACTCTCCGGAGAAGT+CGG | 0.598220 | 4.1:-16740322 | None:intergenic |
| GGTTTGAGATGTTCTTGCTG+TGG | 0.598600 | 4.1:+16738734 | MS.gene08325:CDS |
| TGATAATGTTGAAGTAAACA+TGG | 0.598835 | 4.1:+16739564 | MS.gene08325:CDS |
| GACGATCATGATGATTTCCA+AGG | 0.606183 | 4.1:+16741114 | MS.gene08325:CDS |
| TCTACGTGATTTGAGGAATG+TGG | 0.613878 | 4.1:+16741479 | MS.gene08325:CDS |
| AGCAACGCTGAGGATAGTGA+TGG | 0.616923 | 4.1:+16740826 | MS.gene08325:CDS |
| ACAATCCGAGTACGATCAAG+AGG | 0.619408 | 4.1:+16740636 | MS.gene08325:CDS |
| AATCCGCATTGAAATCTGAA+AGG | 0.619756 | 4.1:+16740461 | MS.gene08325:CDS |
| TTTGCAGTATCAGAGAATGA+TGG | 0.624136 | 4.1:+16740609 | MS.gene08325:CDS |
| AAATGTGTCCAAGGTCAATG+AGG | 0.633487 | 4.1:+16739474 | MS.gene08325:CDS |
| GATGATGCATCACAAACTCA+AGG | 0.634789 | 4.1:+16739753 | MS.gene08325:CDS |
| ATCACAAACTCAAGGTGAGG+AGG | 0.642622 | 4.1:+16739761 | MS.gene08325:CDS |
| CAGGAACATAGGAGATCTTG+CGG | 0.643584 | 4.1:+16741512 | MS.gene08325:CDS |
| TATCAGCTCATTGAGAAAAG+GGG | 0.648271 | 4.1:+16741419 | MS.gene08325:CDS |
| TCCTTCTTGTAGCAACGCTG+AGG | 0.650250 | 4.1:+16740816 | MS.gene08325:CDS |
| TGCATCACAAACTCAAGGTG+AGG | 0.653414 | 4.1:+16739758 | MS.gene08325:CDS |
| TCACACACAAGATCTCTACA+AGG | 0.661299 | 4.1:-16738500 | None:intergenic |
| GTAATAGGCGACATAGAATG+TGG | 0.664054 | 4.1:+16740415 | MS.gene08325:CDS |
| CAAAACATTGAAGAAAACAG+TGG | 0.667489 | 4.1:+16738947 | MS.gene08325:CDS |
| TGATCAATAACAATGCAAGG+AGG | 0.675124 | 4.1:-16738788 | None:intergenic |
| TCTTGGCTACTAAAGCAAAG+AGG | 0.677057 | 4.1:+16741190 | MS.gene08325:CDS |
| TGTAGCAGCCAATCAAACAA+TGG | 0.682068 | 4.1:+16740537 | MS.gene08325:CDS |
| TGTTGAAGTTGAGAAAACTG+AGG | 0.695566 | 4.1:+16739195 | MS.gene08325:CDS |
| CTTCCTTTCAGATTTCAATG+CGG | 0.713730 | 4.1:-16740464 | None:intergenic |
| GCAACGCTGAGGATAGTGAT+GGG | 0.723560 | 4.1:+16740827 | MS.gene08325:CDS |
| TGAATCAGATGATATGTGTG+AGG | 0.729118 | 4.1:+16738580 | MS.gene08325:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ACAATAATATATAAAATGAG+TGG | - | chr4.1:16739672-16739691 | None:intergenic | 15.0% |
| !! | AAAATTTGCAATGTGTAATT+AGG | + | chr4.1:16740166-16740185 | MS.gene08325:intron | 20.0% |
| !! | AAATCAAAATAGATGTGATA+AGG | + | chr4.1:16739312-16739331 | MS.gene08325:CDS | 20.0% |
| !! | AAGGAAATAGATATGATTAA+TGG | + | chr4.1:16738677-16738696 | MS.gene08325:CDS | 20.0% |
| !! | ATATTGAATTATGAAGATGA+AGG | + | chr4.1:16741015-16741034 | MS.gene08325:CDS | 20.0% |
| !! | ATGAAAAATTCAAGATGTTT+AGG | - | chr4.1:16739229-16739248 | None:intergenic | 20.0% |
| !!! | TAATTAGAAAGTTCTAAACA+TGG | - | chr4.1:16740110-16740129 | None:intergenic | 20.0% |
| ! | AAAAATTCAAGATGTTTAGG+TGG | - | chr4.1:16739226-16739245 | None:intergenic | 25.0% |
| ! | AAAAGGAAGACAATAAATTG+AGG | - | chr4.1:16739945-16739964 | None:intergenic | 25.0% |
| ! | AATTTGGATAACAAAAAGGT+TGG | + | chr4.1:16741321-16741340 | MS.gene08325:CDS | 25.0% |
| ! | CAAGAATCAAAAGAAGAAAA+TGG | + | chr4.1:16740868-16740887 | MS.gene08325:CDS | 25.0% |
| ! | GAATGATCTTATATTGAAGA+GGG | + | chr4.1:16740672-16740691 | MS.gene08325:CDS | 25.0% |
| ! | GCTTGAAGTATATAGAAAAA+AGG | + | chr4.1:16740723-16740742 | MS.gene08325:CDS | 25.0% |
| ! | TACATTTGCCAACATTATAA+AGG | - | chr4.1:16740021-16740040 | None:intergenic | 25.0% |
| ! | TGAATGATCTTATATTGAAG+AGG | + | chr4.1:16740671-16740690 | MS.gene08325:CDS | 25.0% |
| ! | TGAGAAAGTTTGACATAATT+TGG | - | chr4.1:16738632-16738651 | None:intergenic | 25.0% |
| !! | AAAGTTTAGATGTTTTTCCA+TGG | + | chr4.1:16738651-16738670 | MS.gene08325:CDS | 25.0% |
| !! | CATCTTGAATTTTTCATTCA+TGG | + | chr4.1:16739232-16739251 | MS.gene08325:CDS | 25.0% |
| !! | GAAGATTTTATTCTGGATTT+TGG | + | chr4.1:16739361-16739380 | MS.gene08325:CDS | 25.0% |
| !! | TGATAATGTTGAAGTAAACA+TGG | + | chr4.1:16739564-16739583 | MS.gene08325:CDS | 25.0% |
| !! | TGATCATTCTATGAACATTT+TGG | + | chr4.1:16738805-16738824 | MS.gene08325:CDS | 25.0% |
| !!! | AACCTTTTTGTTATCCAAAT+TGG | - | chr4.1:16741322-16741341 | None:intergenic | 25.0% |
| !!! | AATTGAATTTTCAAGATGTG+AGG | + | chr4.1:16739509-16739528 | MS.gene08325:CDS | 25.0% |
| !!! | ATGATGAATGGATATTTTGA+TGG | + | chr4.1:16739592-16739611 | MS.gene08325:CDS | 25.0% |
| !!! | ATTTTGATTTCCATTTTCTG+TGG | - | chr4.1:16739302-16739321 | None:intergenic | 25.0% |
| !!! | CCTCTAAAACATTTTTATTG+GGG | + | chr4.1:16740071-16740090 | MS.gene08325:intron | 25.0% |
| !!! | GCCTCTAAAACATTTTTATT+GGG | + | chr4.1:16740070-16740089 | MS.gene08325:intron | 25.0% |
| !!! | TGCCTCTAAAACATTTTTAT+TGG | + | chr4.1:16740069-16740088 | MS.gene08325:intron | 25.0% |
| !!! | TTGAATTTGGTGTAAAGAAA+GGG | + | chr4.1:16739092-16739111 | MS.gene08325:CDS | 25.0% |
| AAAAAAGGTTCATGAGTATG+AGG | + | chr4.1:16740738-16740757 | MS.gene08325:CDS | 30.0% | |
| AAACAATGGCAATGATTAAC+AGG | + | chr4.1:16740551-16740570 | MS.gene08325:CDS | 30.0% | |
| AAATATAACACAGCATCTAC+AGG | - | chr4.1:16740916-16740935 | None:intergenic | 30.0% | |
| AACATGGAAAGAATGATGAA+TGG | + | chr4.1:16739580-16739599 | MS.gene08325:CDS | 30.0% | |
| AATCATTGCCATTGTTTGAT+TGG | - | chr4.1:16740548-16740567 | None:intergenic | 30.0% | |
| AATTCCTGATCATGAACAAA+TGG | + | chr4.1:16739815-16739834 | MS.gene08325:CDS | 30.0% | |
| AGAGAATAAAAATGTGTCCA+AGG | + | chr4.1:16739465-16739484 | MS.gene08325:CDS | 30.0% | |
| ATATCTATTTCCTTCATCCA+TGG | - | chr4.1:16738671-16738690 | None:intergenic | 30.0% | |
| ATGTGCCAATTCTCAATTAA+TGG | - | chr4.1:16739412-16739431 | None:intergenic | 30.0% | |
| ATTGGAACAGAAAACCAATT+TGG | - | chr4.1:16738546-16738565 | None:intergenic | 30.0% | |
| CAAAACATTGAAGAAAACAG+TGG | + | chr4.1:16738947-16738966 | MS.gene08325:CDS | 30.0% | |
| CATTCTTAATTCAAGTGACA+TGG | - | chr4.1:16740230-16740249 | None:intergenic | 30.0% | |
| CCAATTCTCAATTAATGGTT+CGG | - | chr4.1:16739407-16739426 | None:intergenic | 30.0% | |
| CTTCAACATTATCATGCTTA+TGG | - | chr4.1:16739558-16739577 | None:intergenic | 30.0% | |
| GAATGATCAATAACAATGCA+AGG | - | chr4.1:16738794-16738813 | None:intergenic | 30.0% | |
| GACCAATTTGGATAACAAAA+AGG | + | chr4.1:16741317-16741336 | MS.gene08325:CDS | 30.0% | |
| GATCTTTACAAGCTTGAATT+TGG | + | chr4.1:16739079-16739098 | MS.gene08325:CDS | 30.0% | |
| TCAAAATAGATGTGATAAGG+TGG | + | chr4.1:16739315-16739334 | MS.gene08325:CDS | 30.0% | |
| TGATTCAGGTACAAAAAAAG+TGG | + | chr4.1:16738997-16739016 | MS.gene08325:CDS | 30.0% | |
| TGTAGATGCTGTGTTATATT+TGG | + | chr4.1:16740915-16740934 | MS.gene08325:CDS | 30.0% | |
| ! | AATGGATTTGCAAATGGTAA+TGG | + | chr4.1:16741144-16741163 | MS.gene08325:CDS | 30.0% |
| ! | AGAACCATGATTTTAAATCG+AGG | + | chr4.1:16739982-16740001 | MS.gene08325:intron | 30.0% |
| ! | CATGTAAATGGATTTGCAAA+TGG | + | chr4.1:16741138-16741157 | MS.gene08325:CDS | 30.0% |
| ! | GGAATCATTGTCAAATTTTG+AGG | + | chr4.1:16740939-16740958 | MS.gene08325:CDS | 30.0% |
| ! | TAAAATCATGGTTCTATGCA+TGG | - | chr4.1:16739977-16739996 | None:intergenic | 30.0% |
| ! | TGGAATTCATATGTTGTTTG+AGG | + | chr4.1:16738967-16738986 | MS.gene08325:CDS | 30.0% |
| ! | TTATGAGAGACTACAAGTTT+TGG | + | chr4.1:16741368-16741387 | MS.gene08325:CDS | 30.0% |
| ! | TTTGAGATTGAATGTTCCAA+AGG | + | chr4.1:16739138-16739157 | MS.gene08325:CDS | 30.0% |
| !! | CCCCAATAAAAATGTTTTAG+AGG | - | chr4.1:16740074-16740093 | None:intergenic | 30.0% |
| !! | CTTGAATTTGGTGTAAAGAA+AGG | + | chr4.1:16739091-16739110 | MS.gene08325:CDS | 30.0% |
| !! | TATGAAGCAGAAGTATCAAT+TGG | + | chr4.1:16739786-16739805 | MS.gene08325:CDS | 30.0% |
| AAAGAAAGGGAATGAAACCT+TGG | + | chr4.1:16739105-16739124 | MS.gene08325:CDS | 35.0% | |
| AAATAGATGTGATAAGGTGG+TGG | + | chr4.1:16739318-16739337 | MS.gene08325:CDS | 35.0% | |
| AAGCAGAACATGATCAAAGA+AGG | + | chr4.1:16738848-16738867 | MS.gene08325:CDS | 35.0% | |
| AATCCGCATTGAAATCTGAA+AGG | + | chr4.1:16740461-16740480 | MS.gene08325:CDS | 35.0% | |
| ACTCAACTCTACATCTTCTT+CGG | - | chr4.1:16741244-16741263 | None:intergenic | 35.0% | |
| AGATGCTGTGTTATATTTGG+AGG | + | chr4.1:16740918-16740937 | MS.gene08325:CDS | 35.0% | |
| ATTGAGAATTGGCACATTTC+TGG | + | chr4.1:16739415-16739434 | MS.gene08325:CDS | 35.0% | |
| CAAATCCATTTACATGACCT+TGG | - | chr4.1:16741134-16741153 | None:intergenic | 35.0% | |
| CAGTTTGATTCCTGTTGAAT+TGG | + | chr4.1:16739264-16739283 | MS.gene08325:CDS | 35.0% | |
| CATTGAGAAAAGGGGATAAA+GGG | + | chr4.1:16741427-16741446 | MS.gene08325:CDS | 35.0% | |
| CCGAACCATTAATTGAGAAT+TGG | + | chr4.1:16739404-16739423 | MS.gene08325:CDS | 35.0% | |
| CTAGGTTCATATGTTTCTCT+AGG | + | chr4.1:16739619-16739638 | MS.gene08325:intron | 35.0% | |
| CTTCCTTTCAGATTTCAATG+CGG | - | chr4.1:16740467-16740486 | None:intergenic | 35.0% | |
| GAACAAATGGATGAGTATCA+AGG | + | chr4.1:16739828-16739847 | MS.gene08325:CDS | 35.0% | |
| GATCAATAACAATGCAAGGA+GGG | - | chr4.1:16738790-16738809 | None:intergenic | 35.0% | |
| GATTTCCAAGGTCATGTAAA+TGG | + | chr4.1:16741126-16741145 | MS.gene08325:CDS | 35.0% | |
| GGAATTGAGAAAGTTGAAGA+GGG | + | chr4.1:16738713-16738732 | MS.gene08325:CDS | 35.0% | |
| GTATCAGCTCATTGAGAAAA+GGG | + | chr4.1:16741418-16741437 | MS.gene08325:CDS | 35.0% | |
| TAACCATATGCCTTCATCTT+TGG | + | chr4.1:16740261-16740280 | MS.gene08325:CDS | 35.0% | |
| TACAACATCTACGTGATTTG+AGG | + | chr4.1:16741472-16741491 | MS.gene08325:CDS | 35.0% | |
| TATCAGCTCATTGAGAAAAG+GGG | + | chr4.1:16741419-16741438 | MS.gene08325:CDS | 35.0% | |
| TCATCCATTTGTTCATGATC+AGG | - | chr4.1:16739822-16739841 | None:intergenic | 35.0% | |
| TCATTAAGCTCCAAAGATGA+AGG | - | chr4.1:16740274-16740293 | None:intergenic | 35.0% | |
| TCATTGAGAAAAGGGGATAA+AGG | + | chr4.1:16741426-16741445 | MS.gene08325:CDS | 35.0% | |
| TGAATCAGATGATATGTGTG+AGG | + | chr4.1:16738580-16738599 | MS.gene08325:CDS | 35.0% | |
| TGATCAATAACAATGCAAGG+AGG | - | chr4.1:16738791-16738810 | None:intergenic | 35.0% | |
| TGCTGTTGAGATTTCCAAAT+TGG | + | chr4.1:16738529-16738548 | MS.gene08325:CDS | 35.0% | |
| TGTATCAGCTCATTGAGAAA+AGG | + | chr4.1:16741417-16741436 | MS.gene08325:CDS | 35.0% | |
| TGTTGAAGTTGAGAAAACTG+AGG | + | chr4.1:16739195-16739214 | MS.gene08325:CDS | 35.0% | |
| TTCAGCTGAAAAGACCAATT+TGG | + | chr4.1:16741305-16741324 | MS.gene08325:CDS | 35.0% | |
| TTCAGGTACAAAAAAAGTGG+AGG | + | chr4.1:16739000-16739019 | MS.gene08325:CDS | 35.0% | |
| TTGTATCCGAAAGAATATCC+TGG | - | chr4.1:16739854-16739873 | None:intergenic | 35.0% | |
| TTTAATGCCCAACATGATAG+TGG | + | chr4.1:16739915-16739934 | MS.gene08325:CDS | 35.0% | |
| TTTGCAGTATCAGAGAATGA+TGG | + | chr4.1:16740609-16740628 | MS.gene08325:CDS | 35.0% | |
| ! | ACTAGAACAGCTGAAAGTAT+TGG | + | chr4.1:16740978-16740997 | MS.gene08325:CDS | 35.0% |
| ! | AGATGTGAGGTTTTCTCAAA+TGG | + | chr4.1:16739522-16739541 | MS.gene08325:CDS | 35.0% |
| ! | AGATGTTTTTCCATGGATGA+AGG | + | chr4.1:16738658-16738677 | MS.gene08325:CDS | 35.0% |
| ! | ATGCATGGATTTGAGGTAAA+AGG | - | chr4.1:16739962-16739981 | None:intergenic | 35.0% |
| ! | GATATGATTAATGGTGCTGA+TGG | + | chr4.1:16738686-16738705 | MS.gene08325:CDS | 35.0% |
| ! | GCAACCTCGATTTAAAATCA+TGG | - | chr4.1:16739989-16740008 | None:intergenic | 35.0% |
| ! | GGAGAGTGAAGATTTTATTC+TGG | + | chr4.1:16739354-16739373 | MS.gene08325:CDS | 35.0% |
| ! | TCATTGGATGGAAGTGTAAT+AGG | + | chr4.1:16740400-16740419 | MS.gene08325:CDS | 35.0% |
| ! | TTCAGCTAGTTTGTGATGAT+TGG | - | chr4.1:16738564-16738583 | None:intergenic | 35.0% |
| ! | TTTGAGGTTGAACATGATTC+AGG | + | chr4.1:16738983-16739002 | MS.gene08325:CDS | 35.0% |
| !! | ATTAATGGTGCTGATGGAAA+GGG | + | chr4.1:16738692-16738711 | MS.gene08325:CDS | 35.0% |
| !! | CAAAAAGGTTGGTTTAGAAG+AGG | + | chr4.1:16741332-16741351 | MS.gene08325:CDS | 35.0% |
| !! | GTACTGATTGCATCAAAAAG+TGG | - | chr4.1:16741222-16741241 | None:intergenic | 35.0% |
| !! | TGTCAAATTTTGAGGAAGAG+AGG | + | chr4.1:16740947-16740966 | MS.gene08325:CDS | 35.0% |
| !!! | AGAAACTACTTTTTCTCGAG+AGG | + | chr4.1:16740356-16740375 | MS.gene08325:CDS | 35.0% |
| !!! | GGATATTTTGATGGAGAACT+AGG | + | chr4.1:16739601-16739620 | MS.gene08325:CDS | 35.0% |
| !!! | TACTTTTTCTCGAGAGGAAA+GGG | + | chr4.1:16740362-16740381 | MS.gene08325:CDS | 35.0% |
| AAATGTGTCCAAGGTCAATG+AGG | + | chr4.1:16739474-16739493 | MS.gene08325:CDS | 40.0% | |
| AACATCTTCGTGAAGAGAAC+GGG | + | chr4.1:16741067-16741086 | MS.gene08325:CDS | 40.0% | |
| AACTGCAAATGTAGTCGCAT+CGG | - | chr4.1:16740045-16740064 | None:intergenic | 40.0% | |
| AGGCTTACCACTATCATGTT+GGG | - | chr4.1:16739925-16739944 | None:intergenic | 40.0% | |
| ATTCATCTACTAGCTCAGTC+AGG | + | chr4.1:16739892-16739911 | MS.gene08325:CDS | 40.0% | |
| ATTGAATGTTCCAAAGGCTC+AGG | + | chr4.1:16739144-16739163 | MS.gene08325:CDS | 40.0% | |
| CGCATTGAAATCTGAAAGGA+AGG | + | chr4.1:16740465-16740484 | MS.gene08325:CDS | 40.0% | |
| GAACATCTTCGTGAAGAGAA+CGG | + | chr4.1:16741066-16741085 | MS.gene08325:CDS | 40.0% | |
| GAAGAAGATGTAGAGTTGAG+TGG | + | chr4.1:16741243-16741262 | MS.gene08325:CDS | 40.0% | |
| GACGATCATGATGATTTCCA+AGG | + | chr4.1:16741114-16741133 | MS.gene08325:CDS | 40.0% | |
| GATGATGCATCACAAACTCA+AGG | + | chr4.1:16739753-16739772 | MS.gene08325:CDS | 40.0% | |
| GGAACAGAAGATTCATTGGA+TGG | + | chr4.1:16740388-16740407 | MS.gene08325:CDS | 40.0% | |
| GGAGCTTAATGAGAATGAAG+AGG | + | chr4.1:16740282-16740301 | MS.gene08325:CDS | 40.0% | |
| GGGAATTGAGAAAGTTGAAG+AGG | + | chr4.1:16738712-16738731 | MS.gene08325:CDS | 40.0% | |
| GTAATAGGCGACATAGAATG+TGG | + | chr4.1:16740415-16740434 | MS.gene08325:CDS | 40.0% | |
| GTCAGGAACAGAAGATTCAT+TGG | + | chr4.1:16740384-16740403 | MS.gene08325:CDS | 40.0% | |
| GTCGCAGACCTTTATAATGT+TGG | + | chr4.1:16740010-16740029 | MS.gene08325:intron | 40.0% | |
| GTGGATTCAACCAATTCAAC+AGG | - | chr4.1:16739277-16739296 | None:intergenic | 40.0% | |
| TCAAGGCCAGGATATTCTTT+CGG | + | chr4.1:16739845-16739864 | MS.gene08325:CDS | 40.0% | |
| TCACACACAAGATCTCTACA+AGG | - | chr4.1:16738503-16738522 | None:intergenic | 40.0% | |
| TCATCAAGGAAGGAAAGTCT+TGG | + | chr4.1:16741173-16741192 | MS.gene08325:CDS | 40.0% | |
| TCTACGTGATTTGAGGAATG+TGG | + | chr4.1:16741479-16741498 | MS.gene08325:CDS | 40.0% | |
| TCTCAAAGTTTCCTCTTCCA+AGG | - | chr4.1:16739125-16739144 | None:intergenic | 40.0% | |
| TCTTGGCTACTAAAGCAAAG+AGG | + | chr4.1:16741190-16741209 | MS.gene08325:CDS | 40.0% | |
| TGATTCAACCTCATTGACCT+TGG | - | chr4.1:16739485-16739504 | None:intergenic | 40.0% | |
| TGTAGCAGCCAATCAAACAA+TGG | + | chr4.1:16740537-16740556 | MS.gene08325:CDS | 40.0% | |
| TGTGCTTGTTCTGTTTGTGA+TGG | + | chr4.1:16739034-16739053 | MS.gene08325:CDS | 40.0% | |
| ! | ATTTCCATTTTCTGTGGCAG+TGG | - | chr4.1:16739296-16739315 | None:intergenic | 40.0% |
| ! | TGATGGTGTCAAGGAAACTA+TGG | + | chr4.1:16739051-16739070 | MS.gene08325:CDS | 40.0% |
| ! | TGGTTCTATGCATGGATTTG+AGG | - | chr4.1:16739969-16739988 | None:intergenic | 40.0% |
| ! | TTCTGTTTGTGATGGTGTCA+AGG | + | chr4.1:16739042-16739061 | MS.gene08325:CDS | 40.0% |
| !! | AAAGGTTGGTTTAGAAGAGG+AGG | + | chr4.1:16741335-16741354 | MS.gene08325:CDS | 40.0% |
| !! | ATGGAAAGCATCATCAAGGA+AGG | + | chr4.1:16741163-16741182 | MS.gene08325:CDS | 40.0% |
| !! | GATTAATGGTGCTGATGGAA+AGG | + | chr4.1:16738691-16738710 | MS.gene08325:CDS | 40.0% |
| !! | GCACATTTCTGGTGATATTG+TGG | + | chr4.1:16739426-16739445 | MS.gene08325:CDS | 40.0% |
| !! | GGTAATGGAAAGCATCATCA+AGG | + | chr4.1:16741159-16741178 | MS.gene08325:CDS | 40.0% |
| !! | TGAGAGACTACAAGTTTTGG+AGG | + | chr4.1:16741371-16741390 | MS.gene08325:CDS | 40.0% |
| !! | TGTAGTTGATGAAGACTCTC+CGG | - | chr4.1:16740334-16740353 | None:intergenic | 40.0% |
| !!! | CTACTTTTTCTCGAGAGGAA+AGG | + | chr4.1:16740361-16740380 | MS.gene08325:CDS | 40.0% |
| AATGGATGAGTATCAAGGCC+AGG | + | chr4.1:16739833-16739852 | MS.gene08325:CDS | 45.0% | |
| ACAATCCGAGTACGATCAAG+AGG | + | chr4.1:16740636-16740655 | MS.gene08325:CDS | 45.0% | |
| AGAGAAAGCAGCAATGCAGA+TGG | + | chr4.1:16740582-16740601 | MS.gene08325:CDS | 45.0% | |
| AGGGAATGAAACCTTGGAAG+AGG | + | chr4.1:16739111-16739130 | MS.gene08325:CDS | 45.0% | |
| ATCACAAACTCAAGGTGAGG+AGG | + | chr4.1:16739761-16739780 | MS.gene08325:CDS | 45.0% | |
| CAGGAACATAGGAGATCTTG+CGG | + | chr4.1:16741512-16741531 | MS.gene08325:CDS | 45.0% | |
| CATAGCCTCTTGATCGTACT+CGG | - | chr4.1:16740644-16740663 | None:intergenic | 45.0% | |
| GAACTCAGAGTCAGGAACAT+AGG | + | chr4.1:16741501-16741520 | MS.gene08325:CDS | 45.0% | |
| GAATCCACTGCCACAGAAAA+TGG | + | chr4.1:16739289-16739308 | MS.gene08325:CDS | 45.0% | |
| GAGGCTTACCACTATCATGT+TGG | - | chr4.1:16739926-16739945 | None:intergenic | 45.0% | |
| TGATCATCATCCTGAGCCTT+TGG | - | chr4.1:16739157-16739176 | None:intergenic | 45.0% | |
| TGCATCACAAACTCAAGGTG+AGG | + | chr4.1:16739758-16739777 | MS.gene08325:CDS | 45.0% | |
| ! | GCTCCAAAGATGAAGGCATA+TGG | - | chr4.1:16740267-16740286 | None:intergenic | 45.0% |
| ! | GGTTTGAGATGTTCTTGCTG+TGG | + | chr4.1:16738734-16738753 | MS.gene08325:CDS | 45.0% |
| ! | TAGATGTGATAAGGTGGTGG+AGG | + | chr4.1:16739321-16739340 | MS.gene08325:CDS | 45.0% |
| !! | GGCATATGGTTACTTGCTGT+TGG | - | chr4.1:16740253-16740272 | None:intergenic | 45.0% |
| !!! | TGCGGATTTTAACTCCTCGA+AGG | - | chr4.1:16740449-16740468 | None:intergenic | 45.0% |
| AGCAACGCTGAGGATAGTGA+TGG | + | chr4.1:16740826-16740845 | MS.gene08325:CDS | 50.0% | |
| CTTCGTGAAGAGAACGGGAA+TGG | + | chr4.1:16741072-16741091 | MS.gene08325:CDS | 50.0% | |
| GCAACGCTGAGGATAGTGAT+GGG | + | chr4.1:16740827-16740846 | MS.gene08325:CDS | 50.0% | |
| GGAATGTGGAACTCAGAGTC+AGG | + | chr4.1:16741493-16741512 | MS.gene08325:CDS | 50.0% | |
| TCCTCAGCGTTGCTACAAGA+AGG | - | chr4.1:16740820-16740839 | None:intergenic | 50.0% | |
| TCCTTCTTGTAGCAACGCTG+AGG | + | chr4.1:16740816-16740835 | MS.gene08325:CDS | 50.0% | |
| TGAAGACTCTCCGGAGAAGT+CGG | - | chr4.1:16740325-16740344 | None:intergenic | 50.0% | |
| TTTCTCGAGAGGAAAGGGTC+AGG | + | chr4.1:16740367-16740386 | MS.gene08325:CDS | 50.0% | |
| !! | CAGCATCTACAGGAGTGTTC+TGG | - | chr4.1:16740906-16740925 | None:intergenic | 50.0% |
| !! | GGTTGGTTTAGAAGAGGAGG+TGG | + | chr4.1:16741338-16741357 | MS.gene08325:CDS | 50.0% |
| !! | GTGATAAGGTGGTGGAGGAA+GGG | + | chr4.1:16739326-16739345 | MS.gene08325:CDS | 50.0% |
| !! | TGTGATAAGGTGGTGGAGGA+AGG | + | chr4.1:16739325-16739344 | MS.gene08325:CDS | 50.0% |
| ! | ATGTGGTGACGTGACCTTCG+AGG | + | chr4.1:16740432-16740451 | MS.gene08325:CDS | 55.0% |
| !! | GGTGGTGGAGGAAGGGTTTA+AGG | + | chr4.1:16739333-16739352 | MS.gene08325:CDS | 55.0% |
| CTCCGGAGAAGTCGGTGTGT+CGG | - | chr4.1:16740317-16740336 | None:intergenic | 60.0% | |
| TCCGGAGAAGTCGGTGTGTC+GGG | - | chr4.1:16740316-16740335 | None:intergenic | 60.0% | |
| !! | TCCCGACACACCGACTTCTC+CGG | + | chr4.1:16740312-16740331 | MS.gene08325:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.1 | gene | 16738494 | 16741539 | 16738494 | ID=MS.gene08325 |
| chr4.1 | mRNA | 16738494 | 16741539 | 16738494 | ID=MS.gene08325.t1;Parent=MS.gene08325 |
| chr4.1 | exon | 16738494 | 16739622 | 16738494 | ID=MS.gene08325.t1.exon1;Parent=MS.gene08325.t1 |
| chr4.1 | CDS | 16738494 | 16739622 | 16738494 | ID=cds.MS.gene08325.t1;Parent=MS.gene08325.t1 |
| chr4.1 | exon | 16739748 | 16739936 | 16739748 | ID=MS.gene08325.t1.exon2;Parent=MS.gene08325.t1 |
| chr4.1 | CDS | 16739748 | 16739936 | 16739748 | ID=cds.MS.gene08325.t1;Parent=MS.gene08325.t1 |
| chr4.1 | exon | 16740188 | 16741539 | 16740188 | ID=MS.gene08325.t1.exon3;Parent=MS.gene08325.t1 |
| chr4.1 | CDS | 16740188 | 16741539 | 16740188 | ID=cds.MS.gene08325.t1;Parent=MS.gene08325.t1 |
| Gene Sequence |
| Protein sequence |
