Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene20997.t1 | XP_003591227.1 | 99.5 | 183 | 1 | 0 | 1 | 183 | 1 | 183 | 5.50E-94 | 353.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene20997.t1 | Q8LEK2 | 83.3 | 186 | 28 | 1 | 1 | 183 | 1 | 186 | 3.2e-82 | 305.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene20997.t1 | G7I9I7 | 99.5 | 183 | 1 | 0 | 1 | 183 | 1 | 183 | 4.0e-94 | 353.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049129 | MS.gene20997 | -0.802032 | 6.80E-49 | -1.69E-46 |
| MS.gene04918 | MS.gene20997 | 0.820836 | 5.56E-53 | -1.69E-46 |
| MS.gene049283 | MS.gene20997 | 0.816347 | 5.79E-52 | -1.69E-46 |
| MS.gene049499 | MS.gene20997 | 0.806777 | 6.97E-50 | -1.69E-46 |
| MS.gene049680 | MS.gene20997 | 0.841053 | 6.00E-58 | -1.69E-46 |
| MS.gene05029 | MS.gene20997 | 0.827288 | 1.70E-54 | -1.69E-46 |
| MS.gene050752 | MS.gene20997 | 0.862791 | 3.95E-64 | -1.69E-46 |
| MS.gene050838 | MS.gene20997 | 0.809491 | 1.84E-50 | -1.69E-46 |
| MS.gene050945 | MS.gene20997 | 0.831244 | 1.86E-55 | -1.69E-46 |
| MS.gene050955 | MS.gene20997 | 0.863011 | 3.37E-64 | -1.69E-46 |
| MS.gene051003 | MS.gene20997 | 0.847417 | 1.17E-59 | -1.69E-46 |
| MS.gene051234 | MS.gene20997 | 0.884698 | 1.54E-71 | -1.69E-46 |
| MS.gene051343 | MS.gene20997 | 0.807921 | 3.99E-50 | -1.69E-46 |
| MS.gene051699 | MS.gene20997 | 0.833818 | 4.29E-56 | -1.69E-46 |
| MS.gene051902 | MS.gene20997 | 0.812108 | 5.00E-51 | -1.69E-46 |
| MS.gene052072 | MS.gene20997 | 0.810248 | 1.27E-50 | -1.69E-46 |
| MS.gene052479 | MS.gene20997 | 0.835505 | 1.61E-56 | -1.69E-46 |
| MS.gene052793 | MS.gene20997 | 0.812224 | 4.72E-51 | -1.69E-46 |
| MS.gene052947 | MS.gene20997 | 0.804608 | 1.99E-49 | -1.69E-46 |
| MS.gene053228 | MS.gene20997 | 0.810141 | 1.34E-50 | -1.69E-46 |
| MS.gene054004 | MS.gene20997 | 0.813289 | 2.76E-51 | -1.69E-46 |
| MS.gene054403 | MS.gene20997 | 0.868718 | 5.30E-66 | -1.69E-46 |
| MS.gene054413 | MS.gene20997 | 0.800851 | 1.19E-48 | -1.69E-46 |
| MS.gene054957 | MS.gene20997 | 0.812651 | 3.81E-51 | -1.69E-46 |
| MS.gene055555 | MS.gene20997 | 0.830063 | 3.63E-55 | -1.69E-46 |
| MS.gene055765 | MS.gene20997 | 0.80804 | 3.77E-50 | -1.69E-46 |
| MS.gene057102 | MS.gene20997 | 0.848599 | 5.53E-60 | -1.69E-46 |
| MS.gene057705 | MS.gene20997 | 0.832188 | 1.09E-55 | -1.69E-46 |
| MS.gene05781 | MS.gene20997 | 0.835681 | 1.46E-56 | -1.69E-46 |
| MS.gene058159 | MS.gene20997 | 0.834677 | 2.61E-56 | -1.69E-46 |
| MS.gene058781 | MS.gene20997 | 0.805662 | 1.20E-49 | -1.69E-46 |
| MS.gene058783 | MS.gene20997 | 0.800002 | 1.77E-48 | -1.69E-46 |
| MS.gene059146 | MS.gene20997 | 0.842497 | 2.49E-58 | -1.69E-46 |
| MS.gene059227 | MS.gene20997 | 0.831849 | 1.32E-55 | -1.69E-46 |
| MS.gene05985 | MS.gene20997 | -0.843686 | 1.20E-58 | -1.69E-46 |
| MS.gene059901 | MS.gene20997 | -0.815364 | 9.60E-52 | -1.69E-46 |
| MS.gene06011 | MS.gene20997 | 0.824774 | 6.73E-54 | -1.69E-46 |
| MS.gene060763 | MS.gene20997 | 0.843646 | 1.23E-58 | -1.69E-46 |
| MS.gene060937 | MS.gene20997 | 0.802555 | 5.31E-49 | -1.69E-46 |
| MS.gene061100 | MS.gene20997 | 0.846534 | 2.04E-59 | -1.69E-46 |
| MS.gene061160 | MS.gene20997 | 0.808386 | 3.18E-50 | -1.69E-46 |
| MS.gene061188 | MS.gene20997 | 0.811645 | 6.31E-51 | -1.69E-46 |
| MS.gene061243 | MS.gene20997 | 0.804546 | 2.05E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene20997.t1 | MTR_1g084620 | 99.454 | 183 | 1 | 0 | 1 | 183 | 1 | 183 | 5.31e-132 | 367 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene20997.t1 | AT1G09330 | 83.333 | 186 | 28 | 1 | 1 | 183 | 1 | 186 | 6.33e-113 | 319 |
| MS.gene20997.t1 | AT1G09330 | 86.957 | 115 | 12 | 1 | 1 | 112 | 1 | 115 | 1.58e-69 | 207 |
Find 32 sgRNAs with CRISPR-Local
Find 158 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTTGGTAAAACCAACGATAT+TGG | 0.281162 | 1.3:+60021601 | None:intergenic |
| AACGTTGAATTTACCTGGTT+GGG | 0.320527 | 1.3:+60023024 | None:intergenic |
| GCTGATTATCTCCTTGTTGT+AGG | 0.355434 | 1.3:-60021647 | MS.gene20997:CDS |
| ATGATCTTGGTGAGAGTGTT+TGG | 0.360765 | 1.3:-60022575 | MS.gene20997:CDS |
| ATTCTCCCTCATAAGGCTTC+AGG | 0.382513 | 1.3:-60021669 | MS.gene20997:CDS |
| ATCTCTTACCGCAAGGTAAA+GGG | 0.390770 | 1.3:+60022050 | None:intergenic |
| AATCTCTTACCGCAAGGTAA+AGG | 0.423195 | 1.3:+60022049 | None:intergenic |
| AATCAGCCTGAAGCCTTATG+AGG | 0.430875 | 1.3:+60021663 | None:intergenic |
| TGGCAATATTCTCCCTCATA+AGG | 0.431645 | 1.3:-60021676 | MS.gene20997:CDS |
| AACACTAAATGCTGACTGTA+AGG | 0.448188 | 1.3:+60020580 | None:intergenic |
| TTTCACTGCAGTCATTGGCT+AGG | 0.477229 | 1.3:-60022107 | MS.gene20997:intron |
| AAACGTTGAATTTACCTGGT+TGG | 0.477789 | 1.3:+60023023 | None:intergenic |
| CTCAGCATTGCCAATATCGT+TGG | 0.478560 | 1.3:-60021611 | MS.gene20997:CDS |
| CCTCTCAGACAATTGCCTCT+CGG | 0.479391 | 1.3:-60020613 | MS.gene20997:CDS |
| GGATGAACAAGAAAGATTCA+TGG | 0.490476 | 1.3:-60022086 | MS.gene20997:CDS |
| TGGAATGAAATTGATGATCT+TGG | 0.506140 | 1.3:-60022588 | MS.gene20997:CDS |
| TATTTGATAGGCTGCGGCGT+TGG | 0.512423 | 1.3:-60022742 | MS.gene20997:intron |
| AAAGAAACAAGTCCTTGGAT+TGG | 0.535242 | 1.3:+60022877 | None:intergenic |
| ACGTGAAAGAAACAAGTCCT+TGG | 0.537123 | 1.3:+60022872 | None:intergenic |
| GAACACTTACATCTTGATCA+AGG | 0.543889 | 1.3:+60022541 | None:intergenic |
| GGCAGTACTGTGGATTATGT+TGG | 0.568424 | 1.3:-60021696 | MS.gene20997:CDS |
| CTCACGCATGGATCCCAACC+AGG | 0.569182 | 1.3:-60023037 | None:intergenic |
| AACGATATTGGCAATGCTGA+GGG | 0.574974 | 1.3:+60021613 | None:intergenic |
| TGGGTGGTTAAGAATGTCAG+TGG | 0.584529 | 1.3:-60022636 | MS.gene20997:CDS |
| CAACGATATTGGCAATGCTG+AGG | 0.602070 | 1.3:+60021612 | None:intergenic |
| ATCAGCCTGAAGCCTTATGA+GGG | 0.607448 | 1.3:+60021664 | None:intergenic |
| CCGAGAGGCAATTGTCTGAG+AGG | 0.623720 | 1.3:+60020613 | None:intergenic |
| TTGAAAACTACTCCAATCCA+AGG | 0.632706 | 1.3:-60022889 | MS.gene20997:CDS |
| CTGGTGGACCCTTTACCTTG+CGG | 0.632785 | 1.3:-60022058 | MS.gene20997:intron |
| TGCTTCTACAGGCAGTACTG+TGG | 0.650126 | 1.3:-60021706 | MS.gene20997:intron |
| TCAAACAAACTCCTACAACA+AGG | 0.714274 | 1.3:+60021636 | None:intergenic |
| TAAGGTAGATGAAAACCGAG+AGG | 0.750436 | 1.3:+60020598 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAATTAATACAACAAATTGT+TGG | - | chr1.3:60022930-60022949 | MS.gene20997:intron | 15.0% |
| !! | AAAAAACATACATAAGATTC+AGG | + | chr1.3:60021464-60021483 | None:intergenic | 20.0% |
| !! | AGAAAATTTATCACTTTAGT+TGG | + | chr1.3:60021730-60021749 | None:intergenic | 20.0% |
| !! | ATTGAAAGATGTTATTGTTA+CGG | - | chr1.3:60022600-60022619 | MS.gene20997:CDS | 20.0% |
| !! | TACAATCATAAATTTCCATT+TGG | + | chr1.3:60022336-60022355 | None:intergenic | 20.0% |
| !! | TCAAAATGAAAAAAAGAAAC+AGG | + | chr1.3:60022222-60022241 | None:intergenic | 20.0% |
| !! | TGAAAATTCTAACTATAGTT+TGG | - | chr1.3:60022247-60022266 | MS.gene20997:intron | 20.0% |
| !!! | GTAATATGTTTTTCGAAATA+GGG | - | chr1.3:60021111-60021130 | MS.gene20997:intron | 20.0% |
| !!! | TAACTTTGTTATCATTTTTG+TGG | - | chr1.3:60020916-60020935 | MS.gene20997:intron | 20.0% |
| !!! | TGTAATATGTTTTTCGAAAT+AGG | - | chr1.3:60021110-60021129 | MS.gene20997:intron | 20.0% |
| !!! | TTTGTTTTGATTAAGTTTCA+GGG | - | chr1.3:60021086-60021105 | MS.gene20997:intron | 20.0% |
| ! | AATAACATCTTTCAATTTCC+TGG | + | chr1.3:60022596-60022615 | None:intergenic | 25.0% |
| ! | AATTTATAGTACCCTGTTTA+TGG | - | chr1.3:60022673-60022692 | MS.gene20997:CDS | 25.0% |
| ! | ATAACATCTTTCAATTTCCT+GGG | + | chr1.3:60022595-60022614 | None:intergenic | 25.0% |
| ! | ATTAAGTAGTATATCCAAAC+AGG | + | chr1.3:60021137-60021156 | None:intergenic | 25.0% |
| ! | ATTTATAGTACCCTGTTTAT+GGG | - | chr1.3:60022674-60022693 | MS.gene20997:CDS | 25.0% |
| ! | ATTTGTAATTTCCTAAGGAT+GGG | - | chr1.3:60022395-60022414 | MS.gene20997:intron | 25.0% |
| !! | AATAGCTCTGTTAATTATCA+CGG | - | chr1.3:60021772-60021791 | MS.gene20997:intron | 25.0% |
| !! | CTTCTTTTATATTGCAGAAT+TGG | - | chr1.3:60022074-60022093 | MS.gene20997:CDS | 25.0% |
| !! | TGTTGTGTTTTGTATTTGAT+AGG | - | chr1.3:60020850-60020869 | MS.gene20997:intron | 25.0% |
| !! | TTATATTGCAGAATTGGTTT+AGG | - | chr1.3:60022080-60022099 | MS.gene20997:CDS | 25.0% |
| !! | TTTTCTTTATGCTTTGTATC+TGG | - | chr1.3:60021744-60021763 | MS.gene20997:intron | 25.0% |
| !!! | CTTTGTTTTGATTAAGTTTC+AGG | - | chr1.3:60021085-60021104 | MS.gene20997:intron | 25.0% |
| !!! | TTGTTTTGATTAAGTTTCAG+GGG | - | chr1.3:60021087-60021106 | MS.gene20997:intron | 25.0% |
| !!! | TTTTATTTGTATGCTTCTAC+AGG | - | chr1.3:60021887-60021906 | MS.gene20997:intron | 25.0% |
| AAACAATAAACCAATGTGAG+GGG | + | chr1.3:60022878-60022897 | None:intergenic | 30.0% | |
| AAGAAAACGTTGAATTTACC+TGG | + | chr1.3:60020588-60020607 | None:intergenic | 30.0% | |
| ACACCTTAACATGACTAATT+TGG | - | chr1.3:60022366-60022385 | MS.gene20997:intron | 30.0% | |
| AGTTAGCTGAAAACAATCAA+TGG | - | chr1.3:60021275-60021294 | MS.gene20997:intron | 30.0% | |
| ATTGAAACCAGATCTAAGAA+TGG | + | chr1.3:60020614-60020633 | None:intergenic | 30.0% | |
| GAAACAATAAACCAATGTGA+GGG | + | chr1.3:60022879-60022898 | None:intergenic | 30.0% | |
| GAAACACAAATGAAAACAAG+AGG | + | chr1.3:60022716-60022735 | None:intergenic | 30.0% | |
| GAGATAATCACCAAACTAAA+TGG | + | chr1.3:60022539-60022558 | None:intergenic | 30.0% | |
| GATTTGTAATTTCCTAAGGA+TGG | - | chr1.3:60022394-60022413 | MS.gene20997:intron | 30.0% | |
| TACTAAATGCATGTACCAAA+TGG | - | chr1.3:60022318-60022337 | MS.gene20997:intron | 30.0% | |
| TAGTCATGTTAAGGTGTAAT+TGG | + | chr1.3:60022363-60022382 | None:intergenic | 30.0% | |
| TGAAAATGTGATGTGAATCT+AGG | + | chr1.3:60022794-60022813 | None:intergenic | 30.0% | |
| TGAAACAATAAACCAATGTG+AGG | + | chr1.3:60022880-60022899 | None:intergenic | 30.0% | |
| TGACCAAATTAGTCATGTTA+AGG | + | chr1.3:60022372-60022391 | None:intergenic | 30.0% | |
| TTTATAGTACCCTGTTTATG+GGG | - | chr1.3:60022675-60022694 | MS.gene20997:CDS | 30.0% | |
| TTTGGTAAAACCAACGATAT+TGG | + | chr1.3:60022006-60022025 | None:intergenic | 30.0% | |
| ! | AATTTTGCTCTTTTTATGGC+AGG | + | chr1.3:60021835-60021854 | None:intergenic | 30.0% |
| ! | GCACAATTTTGCTCTTTTTA+TGG | + | chr1.3:60021839-60021858 | None:intergenic | 30.0% |
| ! | GGTTTTACCAAATGCAAAAA+AGG | - | chr1.3:60022014-60022033 | MS.gene20997:intron | 30.0% |
| ! | GTTGGCATTTTACATTCTAT+CGG | - | chr1.3:60020880-60020899 | MS.gene20997:intron | 30.0% |
| ! | TGGAATGAAATTGATGATCT+TGG | - | chr1.3:60021016-60021035 | MS.gene20997:intron | 30.0% |
| ! | TTTCTTTCACGTTCTTTTCA+AGG | - | chr1.3:60020743-60020762 | MS.gene20997:intron | 30.0% |
| ! | TTTGGTGATTATCTCTTGAA+AGG | - | chr1.3:60022544-60022563 | MS.gene20997:intron | 30.0% |
| !! | ATGGTGTTATAGTCAAAATG+TGG | - | chr1.3:60021629-60021648 | MS.gene20997:CDS | 30.0% |
| !! | CACTGATTTGTAATTTCCTA+AGG | - | chr1.3:60022390-60022409 | MS.gene20997:intron | 30.0% |
| !!! | GAATTTTAGTTGGAATGAGA+TGG | - | chr1.3:60020993-60021012 | MS.gene20997:intron | 30.0% |
| !!! | TTACACACCTTTTTTGCATT+TGG | + | chr1.3:60022024-60022043 | None:intergenic | 30.0% |
| !!! | TTTTTTTACGTAAGCCATCA+TGG | - | chr1.3:60021240-60021259 | MS.gene20997:intron | 30.0% |
| AAACGTTGAATTTACCTGGT+TGG | + | chr1.3:60020584-60020603 | None:intergenic | 35.0% | |
| AAAGAAACAAGTCCTTGGAT+TGG | + | chr1.3:60020730-60020749 | None:intergenic | 35.0% | |
| AAATTGTGCTCTCTGGTAAT+TGG | - | chr1.3:60021850-60021869 | MS.gene20997:intron | 35.0% | |
| AACAATAAACCAATGTGAGG+GGG | + | chr1.3:60022877-60022896 | None:intergenic | 35.0% | |
| AACCTGATTAGCATGAGAAT+GGG | - | chr1.3:60021418-60021437 | MS.gene20997:intron | 35.0% | |
| AACGTTGAATTTACCTGGTT+GGG | + | chr1.3:60020583-60020602 | None:intergenic | 35.0% | |
| AATATATCAAGCCCATCCTT+AGG | + | chr1.3:60022409-60022428 | None:intergenic | 35.0% | |
| AGAAATCCTTCATATTGGGA+GGG | + | chr1.3:60022853-60022872 | None:intergenic | 35.0% | |
| ATCACCAAACTAAATGGTTG+TGG | + | chr1.3:60022533-60022552 | None:intergenic | 35.0% | |
| CTATATAATCTCTTACCGCA+AGG | + | chr1.3:60021564-60021583 | None:intergenic | 35.0% | |
| CTATCATAAACTCTCCATGA+TGG | + | chr1.3:60021257-60021276 | None:intergenic | 35.0% | |
| GAACACTTACATCTTGATCA+AGG | + | chr1.3:60021066-60021085 | None:intergenic | 35.0% | |
| GGATGAACAAGAAAGATTCA+TGG | - | chr1.3:60021518-60021537 | MS.gene20997:intron | 35.0% | |
| TAATCGCCCAACTAAAACAA+TGG | + | chr1.3:60022626-60022645 | None:intergenic | 35.0% | |
| TATGAAAACATTCTTGCCGT+AGG | - | chr1.3:60022756-60022775 | MS.gene20997:intron | 35.0% | |
| TCAAACAAACTCCTACAACA+AGG | + | chr1.3:60021971-60021990 | None:intergenic | 35.0% | |
| TCATATAAGTGCTTACGTGT+AGG | - | chr1.3:60021182-60021201 | MS.gene20997:intron | 35.0% | |
| TCTTCAACCATTCTTAGATC+TGG | - | chr1.3:60020604-60020623 | MS.gene20997:CDS | 35.0% | |
| TTGAAAACTACTCCAATCCA+AGG | - | chr1.3:60020715-60020734 | MS.gene20997:intron | 35.0% | |
| ! | AACACTAAATGCTGACTGTA+AGG | + | chr1.3:60023027-60023046 | None:intergenic | 35.0% |
| ! | AAGGATGGGCTTGATATATT+TGG | - | chr1.3:60022409-60022428 | MS.gene20997:intron | 35.0% |
| ! | ACTTCCTGAATAAGTCTTGT+CGG | + | chr1.3:60021690-60021709 | None:intergenic | 35.0% |
| ! | AGAAAGATTCATGGCTTTTC+TGG | - | chr1.3:60021527-60021546 | MS.gene20997:intron | 35.0% |
| ! | AGTCAAAATGTGGTTGTTTC+AGG | - | chr1.3:60021639-60021658 | MS.gene20997:CDS | 35.0% |
| ! | ATCTCTTGAAAGGCATAAGT+AGG | - | chr1.3:60022554-60022573 | MS.gene20997:CDS | 35.0% |
| ! | CAAGTTGGAATAATCCAAAC+CGG | - | chr1.3:60021360-60021379 | MS.gene20997:intron | 35.0% |
| ! | GGCATTCATTTTATATTCCC+AGG | - | chr1.3:60022575-60022594 | MS.gene20997:CDS | 35.0% |
| ! | GTGATAGTTCAGTTTTGCTT+AGG | - | chr1.3:60021601-60021620 | MS.gene20997:CDS | 35.0% |
| ! | GTTTTGTATTTGATAGGCTG+CGG | - | chr1.3:60020856-60020875 | MS.gene20997:intron | 35.0% |
| ! | TCTTGCTGCTCTTGATTTTT+GGG | - | chr1.3:60020949-60020968 | MS.gene20997:intron | 35.0% |
| ! | TGCTTTTGTAGTAGACAAGT+TGG | - | chr1.3:60021345-60021364 | MS.gene20997:intron | 35.0% |
| ! | TTCTTGCTGCTCTTGATTTT+TGG | - | chr1.3:60020948-60020967 | MS.gene20997:intron | 35.0% |
| !! | GTCAGTGGAAGAATTTTAGT+TGG | - | chr1.3:60020983-60021002 | MS.gene20997:intron | 35.0% |
| !! | TTTTAGTTGGAATGAGATGG+TGG | - | chr1.3:60020996-60021015 | MS.gene20997:intron | 35.0% |
| !!! | TTACGGCCATTGTTTTAGTT+GGG | - | chr1.3:60022617-60022636 | MS.gene20997:CDS | 35.0% |
| AACCCATTCTCATGCTAATC+AGG | + | chr1.3:60021423-60021442 | None:intergenic | 40.0% | |
| AACGATATTGGCAATGCTGA+GGG | + | chr1.3:60021994-60022013 | None:intergenic | 40.0% | |
| AAGAGCAAAATTGTGCTCTC+TGG | - | chr1.3:60021843-60021862 | MS.gene20997:intron | 40.0% | |
| AATCTCTTACCGCAAGGTAA+AGG | + | chr1.3:60021558-60021577 | None:intergenic | 40.0% | |
| ACGTGAAAGAAACAAGTCCT+TGG | + | chr1.3:60020735-60020754 | None:intergenic | 40.0% | |
| AGCTCTGTTAATTATCACGG+CGG | - | chr1.3:60021775-60021794 | MS.gene20997:intron | 40.0% | |
| ATCTCTTACCGCAAGGTAAA+GGG | + | chr1.3:60021557-60021576 | None:intergenic | 40.0% | |
| CAGAAATCCTTCATATTGGG+AGG | + | chr1.3:60022854-60022873 | None:intergenic | 40.0% | |
| CTGCATTCTTGTATCTGTGA+CGG | - | chr1.3:60022504-60022523 | MS.gene20997:intron | 40.0% | |
| GAACCTGATTAGCATGAGAA+TGG | - | chr1.3:60021417-60021436 | MS.gene20997:intron | 40.0% | |
| GGATCCACAACCATTTAGTT+TGG | - | chr1.3:60022526-60022545 | MS.gene20997:intron | 40.0% | |
| GGGCAGAAATCCTTCATATT+GGG | + | chr1.3:60022857-60022876 | None:intergenic | 40.0% | |
| GGTACATGCATTTAGTAGTC+AGG | + | chr1.3:60022315-60022334 | None:intergenic | 40.0% | |
| TAACCCGACAAGACTTATTC+AGG | - | chr1.3:60021683-60021702 | MS.gene20997:CDS | 40.0% | |
| TAAGGTAGATGAAAACCGAG+AGG | + | chr1.3:60023009-60023028 | None:intergenic | 40.0% | |
| TAGGCTTAGAGAAACTCCTA+CGG | + | chr1.3:60022775-60022794 | None:intergenic | 40.0% | |
| TCAGCAACTTTACACGAAGT+GGG | + | chr1.3:60022282-60022301 | None:intergenic | 40.0% | |
| TGCATTCTTGTATCTGTGAC+GGG | - | chr1.3:60022505-60022524 | MS.gene20997:intron | 40.0% | |
| TGGCAATATTCTCCCTCATA+AGG | - | chr1.3:60021928-60021947 | MS.gene20997:intron | 40.0% | |
| TTGGGCGATTATCTCTTGAA+AGG | - | chr1.3:60022635-60022654 | MS.gene20997:CDS | 40.0% | |
| TTTATGGGGTTGGGAACTTT+GGG | - | chr1.3:60022689-60022708 | MS.gene20997:CDS | 40.0% | |
| TTTCCTTTCACTGCAGTCAT+TGG | - | chr1.3:60021492-60021511 | MS.gene20997:intron | 40.0% | |
| ! | AAAGTGACGGAGATATAACG+AGG | + | chr1.3:60021386-60021405 | None:intergenic | 40.0% |
| ! | AAGATTCATGGCTTTTCTGG+TGG | - | chr1.3:60021530-60021549 | MS.gene20997:intron | 40.0% |
| ! | CAGTTTTGCTTAGGTGCTTA+TGG | - | chr1.3:60021610-60021629 | MS.gene20997:CDS | 40.0% |
| ! | CTCTTTTTATGGCAGGATGT+GGG | + | chr1.3:60021828-60021847 | None:intergenic | 40.0% |
| ! | CTTCCTGAATAAGTCTTGTC+GGG | + | chr1.3:60021689-60021708 | None:intergenic | 40.0% |
| ! | GCTGATTATCTCCTTGTTGT+AGG | - | chr1.3:60021957-60021976 | MS.gene20997:intron | 40.0% |
| ! | TTTTCGAAATAGGGCCTGTT+TGG | - | chr1.3:60021120-60021139 | MS.gene20997:intron | 40.0% |
| !! | ATACTGCTTGGGAGTGTTTA+TGG | + | chr1.3:60021319-60021338 | None:intergenic | 40.0% |
| !! | ATGATCTTGGTGAGAGTGTT+TGG | - | chr1.3:60021029-60021048 | MS.gene20997:intron | 40.0% |
| !! | GCAGAATTGGTTTAGGTTGA+TGG | - | chr1.3:60022087-60022106 | MS.gene20997:CDS | 40.0% |
| !!! | GTTACGGCCATTGTTTTAGT+TGG | - | chr1.3:60022616-60022635 | MS.gene20997:CDS | 40.0% |
| AAGCACTCGTGATACTGCTT+GGG | + | chr1.3:60021330-60021349 | None:intergenic | 45.0% | |
| AAGTTCCCAACCCCATAAAC+AGG | + | chr1.3:60022688-60022707 | None:intergenic | 45.0% | |
| AGTACCCTGTTTATGGGGTT+GGG | - | chr1.3:60022680-60022699 | MS.gene20997:CDS | 45.0% | |
| AGTTCCCAACCCCATAAACA+GGG | + | chr1.3:60022687-60022706 | None:intergenic | 45.0% | |
| ATCCTTCATATTGGGAGGGA+AGG | + | chr1.3:60022849-60022868 | None:intergenic | 45.0% | |
| ATTCTCCCTCATAAGGCTTC+AGG | - | chr1.3:60021935-60021954 | MS.gene20997:intron | 45.0% | |
| CAACGATATTGGCAATGCTG+AGG | + | chr1.3:60021995-60022014 | None:intergenic | 45.0% | |
| CTCAGCATTGCCAATATCGT+TGG | - | chr1.3:60021993-60022012 | MS.gene20997:intron | 45.0% | |
| CTCTGTTAATTATCACGGCG+GGG | - | chr1.3:60021777-60021796 | MS.gene20997:intron | 45.0% | |
| GCTCTGTTAATTATCACGGC+GGG | - | chr1.3:60021776-60021795 | MS.gene20997:intron | 45.0% | |
| GGGGCAGAAATCCTTCATAT+TGG | + | chr1.3:60022858-60022877 | None:intergenic | 45.0% | |
| GTCAGCAACTTTACACGAAG+TGG | + | chr1.3:60022283-60022302 | None:intergenic | 45.0% | |
| GTTTATGGGGTTGGGAACTT+TGG | - | chr1.3:60022688-60022707 | MS.gene20997:CDS | 45.0% | |
| TAGCCAATGACTGCAGTGAA+AGG | + | chr1.3:60021498-60021517 | None:intergenic | 45.0% | |
| TAGTACCCTGTTTATGGGGT+TGG | - | chr1.3:60022679-60022698 | MS.gene20997:CDS | 45.0% | |
| TCAGCAGAGTCGAAAAGTGA+CGG | + | chr1.3:60021399-60021418 | None:intergenic | 45.0% | |
| TCCTTCATATTGGGAGGGAA+GGG | + | chr1.3:60022848-60022867 | None:intergenic | 45.0% | |
| TGGGTGGTTAAGAATGTCAG+TGG | - | chr1.3:60020968-60020987 | MS.gene20997:intron | 45.0% | |
| ! | AAAGCACTCGTGATACTGCT+TGG | + | chr1.3:60021331-60021350 | None:intergenic | 45.0% |
| ! | AATCAGCCTGAAGCCTTATG+AGG | + | chr1.3:60021944-60021963 | None:intergenic | 45.0% |
| ! | ATCAGCCTGAAGCCTTATGA+GGG | + | chr1.3:60021943-60021962 | None:intergenic | 45.0% |
| ! | GCTCTTTTTATGGCAGGATG+TGG | + | chr1.3:60021829-60021848 | None:intergenic | 45.0% |
| ! | GGCAGTACTGTGGATTATGT+TGG | - | chr1.3:60021908-60021927 | MS.gene20997:intron | 45.0% |
| ! | TTTCACTGCAGTCATTGGCT+AGG | - | chr1.3:60021497-60021516 | MS.gene20997:intron | 45.0% |
| !! | TGCTGCTCTTGATTTTTGGG+TGG | - | chr1.3:60020952-60020971 | MS.gene20997:intron | 45.0% |
| CCTCTCAGACAATTGCCTCT+CGG | - | chr1.3:60022991-60023010 | MS.gene20997:intron | 50.0% | |
| CCTTCATATTGGGAGGGAAG+GGG | + | chr1.3:60022847-60022866 | None:intergenic | 50.0% | |
| GAGATATAACGAGGCCGGTT+TGG | + | chr1.3:60021377-60021396 | None:intergenic | 50.0% | |
| TATTTGATAGGCTGCGGCGT+TGG | - | chr1.3:60020862-60020881 | MS.gene20997:intron | 50.0% | |
| TGACGGAGATATAACGAGGC+CGG | + | chr1.3:60021382-60021401 | None:intergenic | 50.0% | |
| TGCTTCTACAGGCAGTACTG+TGG | - | chr1.3:60021898-60021917 | MS.gene20997:intron | 50.0% | |
| CCCCTTCCCTCCCAATATGA+AGG | - | chr1.3:60022844-60022863 | MS.gene20997:intron | 55.0% | |
| CCGAGAGGCAATTGTCTGAG+AGG | + | chr1.3:60022994-60023013 | None:intergenic | 55.0% | |
| GGATTTCTGCCCCCTCACAT+TGG | - | chr1.3:60022865-60022884 | MS.gene20997:CDS | 55.0% | |
| ! | CTGGTGGACCCTTTACCTTG+CGG | - | chr1.3:60021546-60021565 | MS.gene20997:intron | 55.0% |
| ATTGGGAGGGAAGGGGAGAC+AGG | + | chr1.3:60022840-60022859 | None:intergenic | 60.0% | |
| TTGGGAGGGAAGGGGAGACA+GGG | + | chr1.3:60022839-60022858 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.3 | gene | 60020574 | 60023052 | 60020574 | ID=MS.gene20997 |
| chr1.3 | mRNA | 60020574 | 60023052 | 60020574 | ID=MS.gene20997.t1;Parent=MS.gene20997 |
| chr1.3 | exon | 60023038 | 60023052 | 60023038 | ID=MS.gene20997.t1.exon1;Parent=MS.gene20997.t1 |
| chr1.3 | CDS | 60023038 | 60023052 | 60023038 | ID=cds.MS.gene20997.t1;Parent=MS.gene20997.t1 |
| chr1.3 | exon | 60022862 | 60022918 | 60022862 | ID=MS.gene20997.t1.exon2;Parent=MS.gene20997.t1 |
| chr1.3 | CDS | 60022862 | 60022918 | 60022862 | ID=cds.MS.gene20997.t1;Parent=MS.gene20997.t1 |
| chr1.3 | exon | 60022551 | 60022754 | 60022551 | ID=MS.gene20997.t1.exon3;Parent=MS.gene20997.t1 |
| chr1.3 | CDS | 60022551 | 60022754 | 60022551 | ID=cds.MS.gene20997.t1;Parent=MS.gene20997.t1 |
| chr1.3 | exon | 60022059 | 60022118 | 60022059 | ID=MS.gene20997.t1.exon4;Parent=MS.gene20997.t1 |
| chr1.3 | CDS | 60022059 | 60022118 | 60022059 | ID=cds.MS.gene20997.t1;Parent=MS.gene20997.t1 |
| chr1.3 | exon | 60021591 | 60021717 | 60021591 | ID=MS.gene20997.t1.exon5;Parent=MS.gene20997.t1 |
| chr1.3 | CDS | 60021591 | 60021717 | 60021591 | ID=cds.MS.gene20997.t1;Parent=MS.gene20997.t1 |
| chr1.3 | exon | 60020574 | 60020662 | 60020574 | ID=MS.gene20997.t1.exon6;Parent=MS.gene20997.t1 |
| chr1.3 | CDS | 60020574 | 60020662 | 60020574 | ID=cds.MS.gene20997.t1;Parent=MS.gene20997.t1 |
| Gene Sequence |
| Protein sequence |
