Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene24847.t1 | XP_013458440.1 | 89.5 | 220 | 23 | 0 | 9 | 228 | 75 | 294 | 1.20E-98 | 369.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene24847.t1 | O64571 | 50.8 | 63 | 31 | 0 | 17 | 79 | 142 | 204 | 5.3e-10 | 66.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene24847.t1 | A0A072UT04 | 89.5 | 220 | 23 | 0 | 9 | 228 | 75 | 294 | 8.7e-99 | 369.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049580 | MS.gene24847 | 0.821295 | 4.36E-53 | -1.69E-46 |
| MS.gene049824 | MS.gene24847 | 0.826101 | 3.26E-54 | -1.69E-46 |
| MS.gene049825 | MS.gene24847 | 0.836316 | 1.01E-56 | -1.69E-46 |
| MS.gene049873 | MS.gene24847 | 0.820242 | 7.61E-53 | -1.69E-46 |
| MS.gene050277 | MS.gene24847 | 0.837509 | 4.98E-57 | -1.69E-46 |
| MS.gene050303 | MS.gene24847 | 0.803185 | 3.93E-49 | -1.69E-46 |
| MS.gene050838 | MS.gene24847 | 0.857776 | 1.30E-62 | -1.69E-46 |
| MS.gene051003 | MS.gene24847 | 0.802681 | 5.00E-49 | -1.69E-46 |
| MS.gene051330 | MS.gene24847 | 0.804019 | 2.64E-49 | -1.69E-46 |
| MS.gene05134 | MS.gene24847 | 0.80083 | 1.20E-48 | -1.69E-46 |
| MS.gene051687 | MS.gene24847 | 0.812605 | 3.90E-51 | -1.69E-46 |
| MS.gene051700 | MS.gene24847 | 0.822293 | 2.56E-53 | -1.69E-46 |
| MS.gene051746 | MS.gene24847 | 0.8428 | 2.07E-58 | -1.69E-46 |
| MS.gene051748 | MS.gene24847 | 0.822377 | 2.45E-53 | -1.69E-46 |
| MS.gene051850 | MS.gene24847 | 0.813139 | 2.98E-51 | -1.69E-46 |
| MS.gene05188 | MS.gene24847 | 0.814779 | 1.29E-51 | -1.69E-46 |
| MS.gene051902 | MS.gene24847 | 0.811414 | 7.08E-51 | -1.69E-46 |
| MS.gene051903 | MS.gene24847 | 0.847793 | 9.24E-60 | -1.69E-46 |
| MS.gene052133 | MS.gene24847 | 0.80505 | 1.61E-49 | -1.69E-46 |
| MS.gene052296 | MS.gene24847 | 0.813224 | 2.85E-51 | -1.69E-46 |
| MS.gene052818 | MS.gene24847 | -0.805787 | 1.13E-49 | -1.69E-46 |
| MS.gene052947 | MS.gene24847 | 0.878698 | 2.27E-69 | -1.69E-46 |
| MS.gene053122 | MS.gene24847 | 0.804607 | 1.99E-49 | -1.69E-46 |
| MS.gene055424 | MS.gene24847 | 0.821929 | 3.11E-53 | -1.69E-46 |
| MS.gene055468 | MS.gene24847 | 0.808882 | 2.49E-50 | -1.69E-46 |
| MS.gene055555 | MS.gene24847 | 0.857819 | 1.26E-62 | -1.69E-46 |
| MS.gene055580 | MS.gene24847 | -0.825106 | 5.62E-54 | -1.69E-46 |
| MS.gene055808 | MS.gene24847 | 0.825198 | 5.34E-54 | -1.69E-46 |
| MS.gene056043 | MS.gene24847 | -0.840947 | 6.40E-58 | -1.69E-46 |
| MS.gene056075 | MS.gene24847 | 0.846338 | 2.31E-59 | -1.69E-46 |
| MS.gene056091 | MS.gene24847 | 0.83371 | 4.56E-56 | -1.69E-46 |
| MS.gene056631 | MS.gene24847 | 0.828139 | 1.06E-54 | -1.69E-46 |
| MS.gene056986 | MS.gene24847 | 0.804695 | 1.91E-49 | -1.69E-46 |
| MS.gene057094 | MS.gene24847 | 0.841303 | 5.16E-58 | -1.69E-46 |
| MS.gene057102 | MS.gene24847 | 0.810816 | 9.55E-51 | -1.69E-46 |
| MS.gene057234 | MS.gene24847 | 0.827469 | 1.54E-54 | -1.69E-46 |
| MS.gene057705 | MS.gene24847 | 0.8623 | 5.59E-64 | -1.69E-46 |
| MS.gene057999 | MS.gene24847 | 0.801555 | 8.52E-49 | -1.69E-46 |
| MS.gene058055 | MS.gene24847 | 0.802195 | 6.30E-49 | -1.69E-46 |
| MS.gene058074 | MS.gene24847 | 0.83196 | 1.24E-55 | -1.69E-46 |
| MS.gene058238 | MS.gene24847 | 0.80205 | 6.74E-49 | -1.69E-46 |
| MS.gene058852 | MS.gene24847 | 0.824362 | 8.41E-54 | -1.69E-46 |
| MS.gene058906 | MS.gene24847 | 0.803578 | 3.26E-49 | -1.69E-46 |
| MS.gene059146 | MS.gene24847 | 0.803864 | 2.84E-49 | -1.69E-46 |
| MS.gene059227 | MS.gene24847 | 0.804892 | 1.74E-49 | -1.69E-46 |
| MS.gene05954 | MS.gene24847 | 0.819271 | 1.27E-52 | -1.69E-46 |
| MS.gene06001 | MS.gene24847 | 0.859777 | 3.27E-63 | -1.69E-46 |
| MS.gene06011 | MS.gene24847 | 0.829574 | 4.77E-55 | -1.69E-46 |
| MS.gene060365 | MS.gene24847 | 0.813094 | 3.05E-51 | -1.69E-46 |
| MS.gene060429 | MS.gene24847 | 0.831264 | 1.84E-55 | -1.69E-46 |
| MS.gene060586 | MS.gene24847 | 0.811678 | 6.21E-51 | -1.69E-46 |
| MS.gene060763 | MS.gene24847 | 0.852967 | 3.26E-61 | -1.69E-46 |
| MS.gene060830 | MS.gene24847 | 0.806937 | 6.45E-50 | -1.69E-46 |
| MS.gene060917 | MS.gene24847 | 0.801165 | 1.02E-48 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene24847.t1 | MTR_4g125720 | 89.545 | 220 | 23 | 0 | 9 | 228 | 75 | 294 | 1.00e-138 | 390 |
| MS.gene24847.t1 | MTR_4g125720 | 88.889 | 162 | 18 | 0 | 9 | 170 | 75 | 236 | 2.28e-99 | 289 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene24847.t1 | AT2G19385 | 43.243 | 222 | 87 | 8 | 17 | 228 | 83 | 275 | 1.01e-31 | 117 |
| MS.gene24847.t1 | AT2G19380 | 42.683 | 82 | 45 | 1 | 13 | 94 | 208 | 287 | 5.83e-13 | 67.8 |
| MS.gene24847.t1 | AT2G19380 | 50.794 | 63 | 31 | 0 | 17 | 79 | 142 | 204 | 2.41e-12 | 66.2 |
Find 49 sgRNAs with CRISPR-Local
Find 108 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACATCAGTTGACGTGGAAAA+TGG | 0.191316 | 8.1:-6401916 | MS.gene24847:CDS |
| GGAAAATGGGGAAGTATTTC+AGG | 0.217234 | 8.1:-6401902 | MS.gene24847:CDS |
| AAACTTCATTCACCGGTTTC+AGG | 0.267736 | 8.1:+6402007 | None:intergenic |
| CAACAGGAATGTTCAATCTT+TGG | 0.280454 | 8.1:+6401332 | None:intergenic |
| CATCAGTTGACGTGGAAAAT+GGG | 0.380294 | 8.1:-6401915 | MS.gene24847:CDS |
| CTTGTTCTCAACTGCAAAGT+TGG | 0.386423 | 8.1:+6401371 | None:intergenic |
| TAGATTCCTGCAGTGCTTTG+AGG | 0.398509 | 8.1:+6401557 | None:intergenic |
| GAGGAAACATGAAGCATTAG+AGG | 0.399707 | 8.1:-6401968 | MS.gene24847:CDS |
| TTCTTCATCTTCAATCCATC+AGG | 0.401465 | 8.1:+6401595 | None:intergenic |
| AATTCAACATACAAATTTCA+AGG | 0.401997 | 8.1:+6401828 | None:intergenic |
| TCAGAAGACTCGTGCAACTT+TGG | 0.435496 | 8.1:+6402039 | None:intergenic |
| GCTTCGAAGCATGGAACGCT+CGG | 0.436244 | 8.1:+6402160 | None:intergenic |
| TCCACTGCATCCTTTGCATC+AGG | 0.440074 | 8.1:+6402108 | None:intergenic |
| TTTGCCATCTTTGACAGGCT+TGG | 0.441946 | 8.1:+6403115 | None:intergenic |
| CAGGCGCAAAATTATCTGTC+TGG | 0.451138 | 8.1:+6402127 | None:intergenic |
| GGAGACGGGTTCTAATGATA+TGG | 0.458688 | 8.1:-6402088 | MS.gene24847:CDS |
| CAAGAGAGAGGAAAATAAAG+TGG | 0.462140 | 8.1:-6401870 | MS.gene24847:CDS |
| TGAACAAAATAACCTGAAAC+CGG | 0.469254 | 8.1:-6402019 | MS.gene24847:CDS |
| TACTGGTGGCAGCATCCTGA+TGG | 0.473972 | 8.1:-6401610 | MS.gene24847:intron |
| CTCAACTGCAAAGTTGGAGC+TGG | 0.492457 | 8.1:+6401377 | None:intergenic |
| GAACAAGTATGTGCGATTAG+TGG | 0.494270 | 8.1:-6401355 | MS.gene24847:CDS |
| GCAAAGGATGCAGTGGAGAC+GGG | 0.502647 | 8.1:-6402102 | MS.gene24847:CDS |
| TGCAAAGGATGCAGTGGAGA+CGG | 0.510937 | 8.1:-6402103 | MS.gene24847:CDS |
| CTTCGAAGCATGGAACGCTC+GGG | 0.518211 | 8.1:+6402161 | None:intergenic |
| TCGGAAGAAACTTCATTCAC+CGG | 0.522070 | 8.1:+6402000 | None:intergenic |
| CTAGTGGTTGCTTCGAAGCA+TGG | 0.522690 | 8.1:+6402151 | None:intergenic |
| TGTCAAAGATGGCAAACAAA+AGG | 0.525599 | 8.1:-6403108 | MS.gene24847:CDS |
| GAGCGAGGCGATTGAGCAGA+AGG | 0.538864 | 8.1:-6401509 | MS.gene24847:intron |
| GCTGCCAAGCCTGTCAAAGA+TGG | 0.543446 | 8.1:-6403119 | MS.gene24847:CDS |
| AAATTATCTGTCTGGACTAG+TGG | 0.555342 | 8.1:+6402135 | None:intergenic |
| GCTAGTCGTTGATATTAATG+TGG | 0.556605 | 8.1:-6403086 | MS.gene24847:CDS |
| CTAGTCGTTGATATTAATGT+GGG | 0.562155 | 8.1:-6403085 | MS.gene24847:CDS |
| AGTTGTCCTCAAAGCACTGC+AGG | 0.573521 | 8.1:-6401563 | MS.gene24847:CDS |
| AACGTCCTCCGTGGTTCTGT+AGG | 0.574054 | 8.1:-6403054 | MS.gene24847:intron |
| GAAAATGGGGAAGTATTTCA+GGG | 0.576073 | 8.1:-6401901 | MS.gene24847:CDS |
| ATGCTGAAGGAAAGAAACAC+GGG | 0.581891 | 8.1:-6402191 | MS.gene24847:CDS |
| GCACTTCTTCTACATGCTGA+AGG | 0.586895 | 8.1:-6402204 | MS.gene24847:CDS |
| ATCAGTTGACGTGGAAAATG+GGG | 0.599482 | 8.1:-6401914 | MS.gene24847:CDS |
| AGGAAACATGAAGCATTAGA+GGG | 0.613312 | 8.1:-6401967 | MS.gene24847:CDS |
| GGAAGTATTTCAGGGCGAGA+AGG | 0.613916 | 8.1:-6401893 | MS.gene24847:CDS |
| AGGGCGAGAAGGCAAGAGAG+AGG | 0.620409 | 8.1:-6401882 | MS.gene24847:CDS |
| CATGCTGAAGGAAAGAAACA+CGG | 0.639025 | 8.1:-6402192 | MS.gene24847:CDS |
| GCCTGATGCAAAGGATGCAG+TGG | 0.663160 | 8.1:-6402109 | MS.gene24847:CDS |
| GAATGACACATCAGTTGACG+TGG | 0.669822 | 8.1:-6401923 | MS.gene24847:CDS |
| AAATGAAAATGAATTGAGCG+AGG | 0.672838 | 8.1:-6401524 | MS.gene24847:CDS |
| GCTTAGCTGAACGTCCTCCG+TGG | 0.705410 | 8.1:-6403063 | MS.gene24847:CDS |
| AGTATATACCTACAGAACCA+CGG | 0.706642 | 8.1:+6403046 | None:intergenic |
| TGCTGAAGGAAAGAAACACG+GGG | 0.771538 | 8.1:-6402190 | MS.gene24847:CDS |
| ATATACCTACAGAACCACGG+AGG | 0.855057 | 8.1:+6403049 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTTACTAAAATTAATACTAA+AGG | + | chr8.1:6403030-6403049 | None:intergenic | 10.0% |
| !!! | TTTTATGTAAATGTAAATAT+AGG | - | chr8.1:6401685-6401704 | MS.gene24847:intron | 10.0% |
| !!! | TTTTTATTATAAAATAGTCT+CGG | + | chr8.1:6402127-6402146 | None:intergenic | 10.0% |
| !! | AATACATTTCTTAGTTTAAT+TGG | - | chr8.1:6401983-6402002 | MS.gene24847:CDS | 15.0% |
| !! | TTATCTATATATGTTATAGT+GGG | - | chr8.1:6402696-6402715 | MS.gene24847:intron | 15.0% |
| !! | TTTATCTATATATGTTATAG+TGG | - | chr8.1:6402695-6402714 | MS.gene24847:intron | 15.0% |
| !!! | CAATTTGTTTCAAAAAATAA+AGG | + | chr8.1:6401814-6401833 | None:intergenic | 15.0% |
| !!! | CTTTATTTTTTGAAACAAAT+TGG | - | chr8.1:6401812-6401831 | MS.gene24847:intron | 15.0% |
| !! | AAAAACAAATATTGGTAAAG+AGG | + | chr8.1:6402153-6402172 | None:intergenic | 20.0% |
| !! | AATTCAACATACAAATTTCA+AGG | + | chr8.1:6402646-6402665 | None:intergenic | 20.0% |
| !! | ATTCAACCATAAGTTAAAAA+AGG | + | chr8.1:6401731-6401750 | None:intergenic | 20.0% |
| !! | CACAATCGAAAATTATAAAA+AGG | + | chr8.1:6402061-6402080 | None:intergenic | 20.0% |
| !! | TAGATATTATTTCACTCTTA+TGG | - | chr8.1:6402177-6402196 | MS.gene24847:CDS | 20.0% |
| !! | TCTAGAAGAAAAACAAATAT+TGG | + | chr8.1:6402161-6402180 | None:intergenic | 20.0% |
| !!! | GAAATTTGTATGTTGAATTT+TGG | - | chr8.1:6402647-6402666 | MS.gene24847:intron | 20.0% |
| ! | AGAGAGAAACATAATTATCA+TGG | - | chr8.1:6401549-6401568 | MS.gene24847:CDS | 25.0% |
| ! | ATTACAGCAGGAAAATTATA+TGG | + | chr8.1:6402828-6402847 | None:intergenic | 25.0% |
| ! | ATTATTTCACTCTTATGGTT+TGG | - | chr8.1:6402182-6402201 | MS.gene24847:CDS | 25.0% |
| ! | GAAAAAAGTAAATAAAAGCG+CGG | + | chr8.1:6402039-6402058 | None:intergenic | 25.0% |
| ! | GAATGATATTAGTGTTAATC+AGG | - | chr8.1:6401878-6401897 | MS.gene24847:CDS | 25.0% |
| ! | TTACAGCAGGAAAATTATAT+GGG | + | chr8.1:6402827-6402846 | None:intergenic | 25.0% |
| !! | ATGTTTCCTCTTTTTCTTTT+CGG | + | chr8.1:6402493-6402512 | None:intergenic | 25.0% |
| !! | TTTTACATTAAACGTAAGCA+TGG | + | chr8.1:6401764-6401783 | None:intergenic | 25.0% |
| !!! | TAATCTGCTTATTGTTTTAC+TGG | - | chr8.1:6402844-6402863 | MS.gene24847:intron | 25.0% |
| !!! | TGAAACAAATTGGTTTTTTG+AGG | - | chr8.1:6401822-6401841 | MS.gene24847:intron | 25.0% |
| AAATGAAAATGAATTGAGCG+AGG | - | chr8.1:6402947-6402966 | MS.gene24847:intron | 30.0% | |
| AGGATGTTGAAAAATTAGCT+GGG | - | chr8.1:6401705-6401724 | MS.gene24847:intron | 30.0% | |
| CATGAACCGTAAGAAATAAT+AGG | + | chr8.1:6401633-6401652 | None:intergenic | 30.0% | |
| CTAGTCGTTGATATTAATGT+GGG | - | chr8.1:6401386-6401405 | MS.gene24847:CDS | 30.0% | |
| CTTATGGTTGAATTATGTAG+TGG | - | chr8.1:6401738-6401757 | MS.gene24847:intron | 30.0% | |
| GATAAAGCAGAAAACAAGAA+AGG | + | chr8.1:6402681-6402700 | None:intergenic | 30.0% | |
| TACAGCAGGAAAATTATATG+GGG | + | chr8.1:6402826-6402845 | None:intergenic | 30.0% | |
| TAGGATGTTGAAAAATTAGC+TGG | - | chr8.1:6401704-6401723 | MS.gene24847:intron | 30.0% | |
| TATAGTGATATAGAGATAGC+TGG | - | chr8.1:6402745-6402764 | MS.gene24847:intron | 30.0% | |
| TGAACAAAATAACCTGAAAC+CGG | - | chr8.1:6402452-6402471 | MS.gene24847:intron | 30.0% | |
| TTATCTGTTTATTCTGAGCA+TGG | - | chr8.1:6402722-6402741 | MS.gene24847:intron | 30.0% | |
| TTTCTTCCGAAAAGAAAAAG+AGG | - | chr8.1:6402484-6402503 | MS.gene24847:intron | 30.0% | |
| ! | AGTCCTCCTATTATTTCTTA+CGG | - | chr8.1:6401624-6401643 | MS.gene24847:intron | 30.0% |
| AACAATAAGCAGATTACAGC+AGG | + | chr8.1:6402840-6402859 | None:intergenic | 35.0% | |
| AATCAGGTAAGAGTCTAAAC+AGG | - | chr8.1:6401894-6401913 | MS.gene24847:CDS | 35.0% | |
| ACACTACAATATGCCGTTAT+TGG | + | chr8.1:6402104-6402123 | None:intergenic | 35.0% | |
| ACAGAAACACAACTCATAGA+TGG | + | chr8.1:6402999-6403018 | None:intergenic | 35.0% | |
| ACGGTTCATGCAATCATAAA+GGG | - | chr8.1:6401643-6401662 | MS.gene24847:intron | 35.0% | |
| AGTATATACCTACAGAACCA+CGG | + | chr8.1:6401428-6401447 | None:intergenic | 35.0% | |
| CAAGAGAGAGGAAAATAAAG+TGG | - | chr8.1:6402601-6402620 | MS.gene24847:intron | 35.0% | |
| GAACCGTAAGAAATAATAGG+AGG | + | chr8.1:6401630-6401649 | None:intergenic | 35.0% | |
| GCTAGTCGTTGATATTAATG+TGG | - | chr8.1:6401385-6401404 | MS.gene24847:CDS | 35.0% | |
| TACGGTTCATGCAATCATAA+AGG | - | chr8.1:6401642-6401661 | MS.gene24847:intron | 35.0% | |
| TGTCAAAGATGGCAAACAAA+AGG | - | chr8.1:6401363-6401382 | MS.gene24847:CDS | 35.0% | |
| TTCTTCATCTTCAATCCATC+AGG | + | chr8.1:6402879-6402898 | None:intergenic | 35.0% | |
| ! | AAATTATCTGTCTGGACTAG+TGG | + | chr8.1:6402339-6402358 | None:intergenic | 35.0% |
| ! | AGGAAACATGAAGCATTAGA+GGG | - | chr8.1:6402504-6402523 | MS.gene24847:intron | 35.0% |
| !! | GAAAATGGGGAAGTATTTCA+GGG | - | chr8.1:6402570-6402589 | MS.gene24847:intron | 35.0% |
| !! | TCTGCTTATTGTTTTACTGG+TGG | - | chr8.1:6402847-6402866 | MS.gene24847:intron | 35.0% |
| !! | TTTTGTTTGCCATCTTTGAC+AGG | + | chr8.1:6401364-6401383 | None:intergenic | 35.0% |
| ACATCAGTTGACGTGGAAAA+TGG | - | chr8.1:6402555-6402574 | MS.gene24847:intron | 40.0% | |
| ATCAGTTGACGTGGAAAATG+GGG | - | chr8.1:6402557-6402576 | MS.gene24847:intron | 40.0% | |
| ATGCTGAAGGAAAGAAACAC+GGG | - | chr8.1:6402280-6402299 | MS.gene24847:intron | 40.0% | |
| CACAACTCATAGATGGACAA+TGG | + | chr8.1:6402992-6403011 | None:intergenic | 40.0% | |
| CATCAGTTGACGTGGAAAAT+GGG | - | chr8.1:6402556-6402575 | MS.gene24847:intron | 40.0% | |
| CATGCTGAAGGAAAGAAACA+CGG | - | chr8.1:6402279-6402298 | MS.gene24847:intron | 40.0% | |
| CATGGTCTACATATCCTGTT+CGG | - | chr8.1:6401567-6401586 | MS.gene24847:CDS | 40.0% | |
| CGGTTCATGCAATCATAAAG+GGG | - | chr8.1:6401644-6401663 | MS.gene24847:intron | 40.0% | |
| CTTGTTCTCAACTGCAAAGT+TGG | + | chr8.1:6403103-6403122 | None:intergenic | 40.0% | |
| GAACAAGTATGTGCGATTAG+TGG | - | chr8.1:6403116-6403135 | MS.gene24847:CDS | 40.0% | |
| GGTTCATGCAATCATAAAGG+GGG | - | chr8.1:6401645-6401664 | MS.gene24847:intron | 40.0% | |
| TCGGAAGAAACTTCATTCAC+CGG | + | chr8.1:6402474-6402493 | None:intergenic | 40.0% | |
| TCTACATATCCTGTTCGGAT+GGG | - | chr8.1:6401572-6401591 | MS.gene24847:CDS | 40.0% | |
| TGAGTGTCAACTGCCAATAA+CGG | - | chr8.1:6402088-6402107 | MS.gene24847:CDS | 40.0% | |
| ! | GAGATAGCTGGTGACTTTTA+AGG | - | chr8.1:6402757-6402776 | MS.gene24847:intron | 40.0% |
| ! | GAGGAAACATGAAGCATTAG+AGG | - | chr8.1:6402503-6402522 | MS.gene24847:intron | 40.0% |
| ! | TAATTTTGCGCCTGATGCAA+AGG | - | chr8.1:6402353-6402372 | MS.gene24847:intron | 40.0% |
| !! | AAACTTCATTCACCGGTTTC+AGG | + | chr8.1:6402467-6402486 | None:intergenic | 40.0% |
| !! | GGAAAATGGGGAAGTATTTC+AGG | - | chr8.1:6402569-6402588 | MS.gene24847:intron | 40.0% |
| !!! | GCTGGGCCTTTTTTAACTTA+TGG | - | chr8.1:6401722-6401741 | MS.gene24847:intron | 40.0% |
| ATATACCTACAGAACCACGG+AGG | + | chr8.1:6401425-6401444 | None:intergenic | 45.0% | |
| ATCCTGTTCGGATGGGAATT+GGG | - | chr8.1:6401579-6401598 | MS.gene24847:CDS | 45.0% | |
| CAGGCGCAAAATTATCTGTC+TGG | + | chr8.1:6402347-6402366 | None:intergenic | 45.0% | |
| GAATGACACATCAGTTGACG+TGG | - | chr8.1:6402548-6402567 | MS.gene24847:intron | 45.0% | |
| GCACTTCTTCTACATGCTGA+AGG | - | chr8.1:6402267-6402286 | MS.gene24847:intron | 45.0% | |
| GTCTACATATCCTGTTCGGA+TGG | - | chr8.1:6401571-6401590 | MS.gene24847:CDS | 45.0% | |
| TAGATTCCTGCAGTGCTTTG+AGG | + | chr8.1:6402917-6402936 | None:intergenic | 45.0% | |
| TATCCTGTTCGGATGGGAAT+TGG | - | chr8.1:6401578-6401597 | MS.gene24847:CDS | 45.0% | |
| TCAGAAGACTCGTGCAACTT+TGG | + | chr8.1:6402435-6402454 | None:intergenic | 45.0% | |
| TGCAAGTCTCTTGTGGATCA+AGG | - | chr8.1:6401926-6401945 | MS.gene24847:CDS | 45.0% | |
| TGCTGAAGGAAAGAAACACG+GGG | - | chr8.1:6402281-6402300 | MS.gene24847:intron | 45.0% | |
| TTGATCCACAAGAGACTTGC+AGG | + | chr8.1:6401927-6401946 | None:intergenic | 45.0% | |
| TTTGCCATCTTTGACAGGCT+TGG | + | chr8.1:6401359-6401378 | None:intergenic | 45.0% | |
| ! | ATTAGCCTGCAAGTCTCTTG+TGG | - | chr8.1:6401919-6401938 | MS.gene24847:CDS | 45.0% |
| ! | GGAGACGGGTTCTAATGATA+TGG | - | chr8.1:6402383-6402402 | MS.gene24847:intron | 45.0% |
| CATGCAATCATAAAGGGGGC+AGG | - | chr8.1:6401649-6401668 | MS.gene24847:intron | 50.0% | |
| CTAGTGGTTGCTTCGAAGCA+TGG | + | chr8.1:6402323-6402342 | None:intergenic | 50.0% | |
| CTCAACTGCAAAGTTGGAGC+TGG | + | chr8.1:6403097-6403116 | None:intergenic | 50.0% | |
| TCCACTGCATCCTTTGCATC+AGG | + | chr8.1:6402366-6402385 | None:intergenic | 50.0% | |
| TGCAAAGGATGCAGTGGAGA+CGG | - | chr8.1:6402368-6402387 | MS.gene24847:intron | 50.0% | |
| !! | AGTTGTCCTCAAAGCACTGC+AGG | - | chr8.1:6402908-6402927 | MS.gene24847:intron | 50.0% |
| !! | GGAAGTATTTCAGGGCGAGA+AGG | - | chr8.1:6402578-6402597 | MS.gene24847:intron | 50.0% |
| AGCCCAATTCCCATCCGAAC+AGG | + | chr8.1:6401584-6401603 | None:intergenic | 55.0% | |
| CTTCGAAGCATGGAACGCTC+GGG | + | chr8.1:6402313-6402332 | None:intergenic | 55.0% | |
| GCAAAGGATGCAGTGGAGAC+GGG | - | chr8.1:6402369-6402388 | MS.gene24847:intron | 55.0% | |
| GCCTGATGCAAAGGATGCAG+TGG | - | chr8.1:6402362-6402381 | MS.gene24847:intron | 55.0% | |
| GCTGCCAAGCCTGTCAAAGA+TGG | - | chr8.1:6401352-6401371 | MS.gene24847:CDS | 55.0% | |
| GCTTCGAAGCATGGAACGCT+CGG | + | chr8.1:6402314-6402333 | None:intergenic | 55.0% | |
| TACTGGTGGCAGCATCCTGA+TGG | - | chr8.1:6402861-6402880 | MS.gene24847:intron | 55.0% | |
| ! | AACGTCCTCCGTGGTTCTGT+AGG | - | chr8.1:6401417-6401436 | MS.gene24847:intron | 55.0% |
| AGGGCGAGAAGGCAAGAGAG+AGG | - | chr8.1:6402589-6402608 | MS.gene24847:intron | 60.0% | |
| GAGCGAGGCGATTGAGCAGA+AGG | - | chr8.1:6402962-6402981 | MS.gene24847:intron | 60.0% | |
| GCTTAGCTGAACGTCCTCCG+TGG | - | chr8.1:6401408-6401427 | MS.gene24847:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.1 | gene | 6401344 | 6403149 | 6401344 | ID=MS.gene24847 |
| chr8.1 | mRNA | 6401344 | 6403149 | 6401344 | ID=MS.gene24847.t1;Parent=MS.gene24847 |
| chr8.1 | exon | 6403055 | 6403149 | 6403055 | ID=MS.gene24847.t1.exon1;Parent=MS.gene24847.t1 |
| chr8.1 | CDS | 6403055 | 6403149 | 6403055 | ID=cds.MS.gene24847.t1;Parent=MS.gene24847.t1 |
| chr8.1 | exon | 6401840 | 6402257 | 6401840 | ID=MS.gene24847.t1.exon2;Parent=MS.gene24847.t1 |
| chr8.1 | CDS | 6401840 | 6402257 | 6401840 | ID=cds.MS.gene24847.t1;Parent=MS.gene24847.t1 |
| chr8.1 | exon | 6401510 | 6401620 | 6401510 | ID=MS.gene24847.t1.exon3;Parent=MS.gene24847.t1 |
| chr8.1 | CDS | 6401510 | 6401620 | 6401510 | ID=cds.MS.gene24847.t1;Parent=MS.gene24847.t1 |
| chr8.1 | exon | 6401344 | 6401406 | 6401344 | ID=MS.gene24847.t1.exon4;Parent=MS.gene24847.t1 |
| chr8.1 | CDS | 6401344 | 6401406 | 6401344 | ID=cds.MS.gene24847.t1;Parent=MS.gene24847.t1 |
| Gene Sequence |
| Protein sequence |
