Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene26098.t1 | XP_010266579.1 | 82 | 50 | 9 | 0 | 1 | 50 | 138 | 187 | 7.20E-15 | 89.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene26098.t1 | A0A1U8AUJ0 | 82.0 | 50 | 9 | 0 | 1 | 50 | 138 | 187 | 5.2e-15 | 89.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049159 | MS.gene26098 | 0.807774 | 4.29E-50 | -1.69E-46 |
| MS.gene049254 | MS.gene26098 | 0.821617 | 3.67E-53 | -1.69E-46 |
| MS.gene049435 | MS.gene26098 | 0.813426 | 2.58E-51 | -1.69E-46 |
| MS.gene049452 | MS.gene26098 | 0.802555 | 5.31E-49 | -1.69E-46 |
| MS.gene050156 | MS.gene26098 | 0.801063 | 1.07E-48 | -1.69E-46 |
| MS.gene050355 | MS.gene26098 | 0.800337 | 1.51E-48 | -1.69E-46 |
| MS.gene050442 | MS.gene26098 | 0.814666 | 1.37E-51 | -1.69E-46 |
| MS.gene051181 | MS.gene26098 | 0.805488 | 1.30E-49 | -1.69E-46 |
| MS.gene051198 | MS.gene26098 | 0.810528 | 1.10E-50 | -1.69E-46 |
| MS.gene051247 | MS.gene26098 | 0.807241 | 5.56E-50 | -1.69E-46 |
| MS.gene051594 | MS.gene26098 | 0.805269 | 1.45E-49 | -1.69E-46 |
| MS.gene051744 | MS.gene26098 | 0.820607 | 6.27E-53 | -1.69E-46 |
| MS.gene051957 | MS.gene26098 | 0.800664 | 1.30E-48 | -1.69E-46 |
| MS.gene052190 | MS.gene26098 | 0.80058 | 1.35E-48 | -1.69E-46 |
| MS.gene052208 | MS.gene26098 | 0.800382 | 1.48E-48 | -1.69E-46 |
| MS.gene052519 | MS.gene26098 | 0.834272 | 3.30E-56 | -1.69E-46 |
| MS.gene052582 | MS.gene26098 | 0.807657 | 4.54E-50 | -1.69E-46 |
| MS.gene052584 | MS.gene26098 | 0.811678 | 6.21E-51 | -1.69E-46 |
| MS.gene052773 | MS.gene26098 | 0.809923 | 1.49E-50 | -1.69E-46 |
| MS.gene052863 | MS.gene26098 | 0.814581 | 1.43E-51 | -1.69E-46 |
| MS.gene053166 | MS.gene26098 | 0.805848 | 1.09E-49 | -1.69E-46 |
| MS.gene053226 | MS.gene26098 | 0.809558 | 1.78E-50 | -1.69E-46 |
| MS.gene05414 | MS.gene26098 | 0.826343 | 2.86E-54 | -1.69E-46 |
| MS.gene05415 | MS.gene26098 | 0.828701 | 7.77E-55 | -1.69E-46 |
| MS.gene054236 | MS.gene26098 | 0.844832 | 5.92E-59 | -1.69E-46 |
| MS.gene054291 | MS.gene26098 | -0.819655 | 1.04E-52 | -1.69E-46 |
| MS.gene054467 | MS.gene26098 | 0.803609 | 3.21E-49 | -1.69E-46 |
| MS.gene054559 | MS.gene26098 | 0.80518 | 1.51E-49 | -1.69E-46 |
| MS.gene054651 | MS.gene26098 | 0.834422 | 3.03E-56 | -1.69E-46 |
| MS.gene05468 | MS.gene26098 | 0.80816 | 3.55E-50 | -1.69E-46 |
| MS.gene054775 | MS.gene26098 | 0.83717 | 6.09E-57 | -1.69E-46 |
| MS.gene054801 | MS.gene26098 | 0.817324 | 3.50E-52 | -1.69E-46 |
| MS.gene055227 | MS.gene26098 | 0.812416 | 4.29E-51 | -1.69E-46 |
| MS.gene055228 | MS.gene26098 | 0.815827 | 7.57E-52 | -1.69E-46 |
| MS.gene055357 | MS.gene26098 | 0.805423 | 1.34E-49 | -1.69E-46 |
| MS.gene055589 | MS.gene26098 | 0.804281 | 2.33E-49 | -1.69E-46 |
| MS.gene055818 | MS.gene26098 | 0.85956 | 3.80E-63 | -1.69E-46 |
| MS.gene055926 | MS.gene26098 | 0.800468 | 1.42E-48 | -1.69E-46 |
| MS.gene056050 | MS.gene26098 | 0.802321 | 5.93E-49 | -1.69E-46 |
| MS.gene056162 | MS.gene26098 | 0.800111 | 1.68E-48 | -1.69E-46 |
| MS.gene056173 | MS.gene26098 | 0.804296 | 2.31E-49 | -1.69E-46 |
| MS.gene056174 | MS.gene26098 | 0.812892 | 3.37E-51 | -1.69E-46 |
| MS.gene056366 | MS.gene26098 | 0.83113 | 1.99E-55 | -1.69E-46 |
| MS.gene056595 | MS.gene26098 | 0.81422 | 1.72E-51 | -1.69E-46 |
| MS.gene057444 | MS.gene26098 | 0.809715 | 1.65E-50 | -1.69E-46 |
| MS.gene058037 | MS.gene26098 | 0.815587 | 8.57E-52 | -1.69E-46 |
| MS.gene058515 | MS.gene26098 | 0.805658 | 1.20E-49 | -1.69E-46 |
| MS.gene058625 | MS.gene26098 | 0.824568 | 7.52E-54 | -1.69E-46 |
| MS.gene058979 | MS.gene26098 | 0.8259 | 3.64E-54 | -1.69E-46 |
| MS.gene059272 | MS.gene26098 | 0.81488 | 1.23E-51 | -1.69E-46 |
| MS.gene059276 | MS.gene26098 | 0.803083 | 4.13E-49 | -1.69E-46 |
| MS.gene059584 | MS.gene26098 | 0.809363 | 1.96E-50 | -1.69E-46 |
| MS.gene059625 | MS.gene26098 | 0.8148 | 1.28E-51 | -1.69E-46 |
| MS.gene060011 | MS.gene26098 | 0.809483 | 1.85E-50 | -1.69E-46 |
| MS.gene060137 | MS.gene26098 | -0.806285 | 8.86E-50 | -1.69E-46 |
| MS.gene060322 | MS.gene26098 | 0.815549 | 8.73E-52 | -1.69E-46 |
| MS.gene060521 | MS.gene26098 | 0.802371 | 5.79E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene26098.t1 | MTR_1g007860 | 59.756 | 82 | 1 | 1 | 1 | 50 | 144 | 225 | 1.32e-23 | 92.4 |
| MS.gene26098.t1 | MTR_8g093450 | 92.308 | 39 | 3 | 0 | 51 | 89 | 57 | 95 | 9.06e-20 | 76.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene26098.t1 | AT5G53050 | 47.561 | 82 | 11 | 1 | 1 | 50 | 132 | 213 | 1.28e-16 | 72.8 |
| MS.gene26098.t1 | AT5G53050 | 47.561 | 82 | 11 | 1 | 1 | 50 | 132 | 213 | 1.29e-16 | 72.8 |
| MS.gene26098.t1 | AT5G53050 | 47.561 | 82 | 11 | 1 | 1 | 50 | 132 | 213 | 1.84e-16 | 72.4 |
| MS.gene26098.t1 | AT5G53050 | 47.561 | 82 | 11 | 1 | 1 | 50 | 132 | 213 | 1.91e-16 | 72.8 |
| MS.gene26098.t1 | AT5G53050 | 47.561 | 82 | 11 | 1 | 1 | 50 | 132 | 213 | 1.91e-16 | 72.8 |
| MS.gene26098.t1 | AT5G53050 | 47.561 | 82 | 11 | 1 | 1 | 50 | 132 | 213 | 3.04e-16 | 72.4 |
Find 23 sgRNAs with CRISPR-Local
Find 102 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAGAAAAGATGAAAAGTGTA+TGG | 0.395163 | 5.4:+56540087 | MS.gene26098:CDS |
| GTGTTGTACCTGATACAATA+TGG | 0.399867 | 5.4:-56539919 | None:intergenic |
| GTGAAAGATAAGAAAGATCT+TGG | 0.408538 | 5.4:+56540002 | MS.gene26098:CDS |
| TTGCTCAATGCAACAGGTGG+TGG | 0.415046 | 5.4:+56538676 | MS.gene26098:CDS |
| GAGGAGAACCATATTGTATC+AGG | 0.416982 | 5.4:+56539911 | MS.gene26098:CDS |
| GCCATGGAGAGAACTCTATC+AGG | 0.426456 | 5.4:-56538652 | None:intergenic |
| ATGGCCTTGCTCAATGCAAC+AGG | 0.435885 | 5.4:+56538670 | MS.gene26098:CDS |
| AGCTTGTAAATTTGCAGCAA+TGG | 0.448455 | 5.4:+56538627 | MS.gene26098:CDS |
| GTTTAACAAAGAGGAGGGAT+TGG | 0.467919 | 5.4:+56540055 | MS.gene26098:CDS |
| CAATATGGTTCTCCTCTTCA+CGG | 0.490112 | 5.4:-56539904 | None:intergenic |
| GAATATCTTGAGGAATATGT+TGG | 0.532265 | 5.4:+56539879 | MS.gene26098:CDS |
| TGTTGCATTGAGCAAGGCCA+TGG | 0.536559 | 5.4:-56538668 | None:intergenic |
| AGAAAAGATGAAAAGTGTAT+GGG | 0.540681 | 5.4:+56540088 | MS.gene26098:CDS |
| TCCTGATAGAGTTCTCTCCA+TGG | 0.577551 | 5.4:+56538651 | MS.gene26098:CDS |
| TATCAGTTTAACAAAGAGGA+GGG | 0.577814 | 5.4:+56540050 | MS.gene26098:CDS |
| GTATTATCAGTTTAACAAAG+AGG | 0.579681 | 5.4:+56540046 | MS.gene26098:CDS |
| TCTTGGAATCATGAAAGTCA+AGG | 0.609272 | 5.4:+56540019 | MS.gene26098:CDS |
| TTATCAGTTTAACAAAGAGG+AGG | 0.617782 | 5.4:+56540049 | MS.gene26098:CDS |
| ACCACCTGTTGCATTGAGCA+AGG | 0.621860 | 5.4:-56538674 | None:intergenic |
| TCACGTGCAGGAATATCTTG+AGG | 0.635000 | 5.4:+56539869 | MS.gene26098:intron |
| AAGATGAAAAGTGTATGGGA+AGG | 0.640402 | 5.4:+56540092 | MS.gene26098:CDS |
| AATATGTTGGAACCGTGAAG+AGG | 0.650450 | 5.4:+56539892 | MS.gene26098:CDS |
| GCCTTGCTCAATGCAACAGG+TGG | 0.684486 | 5.4:+56538673 | MS.gene26098:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATGTTTCAATTTTTTTTTA+CGG | + | chr5.4:56538753-56538772 | MS.gene26098:intron | 10.0% |
| !! | ATGCTTAATACAAATTTAAT+TGG | + | chr5.4:56539289-56539308 | MS.gene26098:intron | 15.0% |
| !! | ATTAAATTTGTATTAAGCAT+TGG | - | chr5.4:56539289-56539308 | None:intergenic | 15.0% |
| !!! | TTTTAAAATCACTACTTTAA+TGG | - | chr5.4:56539645-56539664 | None:intergenic | 15.0% |
| !! | TGCAATTAGATATATAATGT+TGG | + | chr5.4:56539320-56539339 | MS.gene26098:intron | 20.0% |
| !!! | AATTTCTTACTACTGATTTT+AGG | + | chr5.4:56539088-56539107 | MS.gene26098:intron | 20.0% |
| ! | AATGGTAAGTTTAATATAGC+TGG | - | chr5.4:56539627-56539646 | None:intergenic | 25.0% |
| ! | ACATTTCACAGATTTATACA+AGG | - | chr5.4:56538738-56538757 | None:intergenic | 25.0% |
| ! | ATGGTAAGTTTAATATAGCT+GGG | - | chr5.4:56539626-56539645 | None:intergenic | 25.0% |
| ! | CATTTCACAGATTTATACAA+GGG | - | chr5.4:56538737-56538756 | None:intergenic | 25.0% |
| ! | GTATATGATATAAAAGAGTC+TGG | + | chr5.4:56539689-56539708 | MS.gene26098:intron | 25.0% |
| ! | GTATTATCAGTTTAACAAAG+AGG | + | chr5.4:56540046-56540065 | MS.gene26098:CDS | 25.0% |
| ! | TAATATAGAAGAGAAAGTCA+CGG | + | chr5.4:56538955-56538974 | MS.gene26098:intron | 25.0% |
| ! | TTTAATTACAAACGTAGTTC+AGG | + | chr5.4:56539037-56539056 | MS.gene26098:intron | 25.0% |
| !! | AAATTTTATATATCACGTGC+AGG | + | chr5.4:56539857-56539876 | MS.gene26098:intron | 25.0% |
| !! | AAGAAAAGATGAAAAGTGTA+TGG | + | chr5.4:56540087-56540106 | MS.gene26098:CDS | 25.0% |
| !! | AGAAAAGATGAAAAGTGTAT+GGG | + | chr5.4:56540088-56540107 | MS.gene26098:CDS | 25.0% |
| !!! | TATCTTGTTTTTTCAGTCTT+GGG | + | chr5.4:56539755-56539774 | MS.gene26098:intron | 25.0% |
| AACTAACTACATTGGGAATT+GGG | + | chr5.4:56538823-56538842 | MS.gene26098:intron | 30.0% | |
| ATCTTTCTTATCTTTCACCT+TGG | - | chr5.4:56540000-56540019 | None:intergenic | 30.0% | |
| CTAAATTTCTCCTAAAGGTT+TGG | - | chr5.4:56539154-56539173 | None:intergenic | 30.0% | |
| CTCAACTAAATTTCTCCTAA+AGG | - | chr5.4:56539159-56539178 | None:intergenic | 30.0% | |
| CTGAAAAGAAGCTTCAATTT+AGG | + | chr5.4:56539945-56539964 | MS.gene26098:intron | 30.0% | |
| GAAGTTGCATACATAACAAA+TGG | + | chr5.4:56539065-56539084 | MS.gene26098:intron | 30.0% | |
| GAATATCTTGAGGAATATGT+TGG | + | chr5.4:56539879-56539898 | MS.gene26098:CDS | 30.0% | |
| GCTAGTTAACTAACTACATT+GGG | + | chr5.4:56538816-56538835 | MS.gene26098:intron | 30.0% | |
| GGTTTCCTATGAACTATTAT+CGG | + | chr5.4:56539371-56539390 | MS.gene26098:intron | 30.0% | |
| GTCACATAATATAGTACCTT+TGG | - | chr5.4:56538715-56538734 | None:intergenic | 30.0% | |
| GTGAAAGATAAGAAAGATCT+TGG | + | chr5.4:56540002-56540021 | MS.gene26098:CDS | 30.0% | |
| TAACTAACTACATTGGGAAT+TGG | + | chr5.4:56538822-56538841 | MS.gene26098:intron | 30.0% | |
| TAGAACAAGAACCTCTTATA+AGG | - | chr5.4:56539428-56539447 | None:intergenic | 30.0% | |
| TATCAGTTTAACAAAGAGGA+GGG | + | chr5.4:56540050-56540069 | MS.gene26098:CDS | 30.0% | |
| TCTTTCTTATCTTTCACCTT+GGG | - | chr5.4:56539999-56540018 | None:intergenic | 30.0% | |
| TGGTAAGTTTAATATAGCTG+GGG | - | chr5.4:56539625-56539644 | None:intergenic | 30.0% | |
| TGTGTTAATGTGCTATCTTT+AGG | + | chr5.4:56539819-56539838 | MS.gene26098:intron | 30.0% | |
| TTATCAGTTTAACAAAGAGG+AGG | + | chr5.4:56540049-56540068 | MS.gene26098:CDS | 30.0% | |
| ! | TGGTTTTCAATGTTTTCCAA+AGG | + | chr5.4:56538696-56538715 | MS.gene26098:CDS | 30.0% |
| !!! | CTATCTTGTTTTTTCAGTCT+TGG | + | chr5.4:56539754-56539773 | MS.gene26098:intron | 30.0% |
| AAAACTCCAAACTAGTGCAA+AGG | - | chr5.4:56539397-56539416 | None:intergenic | 35.0% | |
| AAAGGCCGATAATAGTTCAT+AGG | - | chr5.4:56539379-56539398 | None:intergenic | 35.0% | |
| AGCTTGTAAATTTGCAGCAA+TGG | + | chr5.4:56538627-56538646 | MS.gene26098:CDS | 35.0% | |
| AGGTTTGGATGATCGATAAT+TGG | - | chr5.4:56539139-56539158 | None:intergenic | 35.0% | |
| ATCTGTTTGACACATGTACA+TGG | + | chr5.4:56539350-56539369 | MS.gene26098:intron | 35.0% | |
| CGCTAGTTAACTAACTACAT+TGG | + | chr5.4:56538815-56538834 | MS.gene26098:intron | 35.0% | |
| GCACATTAACACAGATTTCT+AGG | - | chr5.4:56539812-56539831 | None:intergenic | 35.0% | |
| GTGCTTTACTTGTGAATAGT+GGG | - | chr5.4:56539541-56539560 | None:intergenic | 35.0% | |
| GTGTTGTACCTGATACAATA+TGG | - | chr5.4:56539922-56539941 | None:intergenic | 35.0% | |
| TATCGATCATCCAAACCTTT+AGG | + | chr5.4:56539141-56539160 | MS.gene26098:intron | 35.0% | |
| TCTTGGAATCATGAAAGTCA+AGG | + | chr5.4:56540019-56540038 | MS.gene26098:CDS | 35.0% | |
| ! | AAGATGAAAAGTGTATGGGA+AGG | + | chr5.4:56540092-56540111 | MS.gene26098:CDS | 35.0% |
| ! | CGTTATGTGATTAGAAGCAT+TGG | + | chr5.4:56538776-56538795 | MS.gene26098:intron | 35.0% |
| !! | TGATTTTAGGTGATCCTTGA+GGG | + | chr5.4:56539101-56539120 | MS.gene26098:intron | 35.0% |
| AATATGTTGGAACCGTGAAG+AGG | + | chr5.4:56539892-56539911 | MS.gene26098:CDS | 40.0% | |
| ACAAAGAGCTGAAGTTGACT+TGG | + | chr5.4:56539512-56539531 | MS.gene26098:intron | 40.0% | |
| ACTACATTGGGAATTGGGAT+TGG | + | chr5.4:56538828-56538847 | MS.gene26098:intron | 40.0% | |
| AGAGATAAGTGACAGAGAAG+TGG | + | chr5.4:56538909-56538928 | MS.gene26098:intron | 40.0% | |
| AGTTTAATATAGCTGGGGAG+AGG | - | chr5.4:56539620-56539639 | None:intergenic | 40.0% | |
| CAAGAACCTCTTATAAGGAC+CGG | - | chr5.4:56539423-56539442 | None:intergenic | 40.0% | |
| CAATATGGTTCTCCTCTTCA+CGG | - | chr5.4:56539907-56539926 | None:intergenic | 40.0% | |
| CGTGCTTTACTTGTGAATAG+TGG | - | chr5.4:56539542-56539561 | None:intergenic | 40.0% | |
| CTACATTGGGAATTGGGATT+GGG | + | chr5.4:56538829-56538848 | MS.gene26098:intron | 40.0% | |
| CTTCAAGAATCGGTAAGCAA+CGG | - | chr5.4:56539478-56539497 | None:intergenic | 40.0% | |
| GACTCTTTGCCTTCAAGAAT+CGG | - | chr5.4:56539488-56539507 | None:intergenic | 40.0% | |
| GAGGAGAACCATATTGTATC+AGG | + | chr5.4:56539911-56539930 | MS.gene26098:CDS | 40.0% | |
| GTAAGCAACGGAAATTTCGT+CGG | - | chr5.4:56539466-56539485 | None:intergenic | 40.0% | |
| GTCATGACTTGATATACCCA+AGG | + | chr5.4:56539980-56539999 | MS.gene26098:intron | 40.0% | |
| GTTTAACAAAGAGGAGGGAT+TGG | + | chr5.4:56540055-56540074 | MS.gene26098:CDS | 40.0% | |
| GTTTAATATAGCTGGGGAGA+GGG | - | chr5.4:56539619-56539638 | None:intergenic | 40.0% | |
| TCAACTTCAGCTCTTTGTTC+AGG | - | chr5.4:56539510-56539529 | None:intergenic | 40.0% | |
| TCACAAGTAAAGCACGTTCT+TGG | + | chr5.4:56539546-56539565 | MS.gene26098:intron | 40.0% | |
| TTTAATATAGCTGGGGAGAG+GGG | - | chr5.4:56539618-56539637 | None:intergenic | 40.0% | |
| !! | ACTAGTTTGGAGTTTTCCTC+CGG | + | chr5.4:56539401-56539420 | MS.gene26098:intron | 40.0% |
| !! | CTGATTTTAGGTGATCCTTG+AGG | + | chr5.4:56539100-56539119 | MS.gene26098:intron | 40.0% |
| AGTGACAGAGAAGTGGTAGT+TGG | + | chr5.4:56538916-56538935 | MS.gene26098:intron | 45.0% | |
| ATTGGGATTGGGTGTCTTTG+TGG | + | chr5.4:56538840-56538859 | MS.gene26098:intron | 45.0% | |
| GTGACAGAGAAGTGGTAGTT+GGG | + | chr5.4:56538917-56538936 | MS.gene26098:intron | 45.0% | |
| TATCGGCCTTTGCACTAGTT+TGG | + | chr5.4:56539388-56539407 | MS.gene26098:intron | 45.0% | |
| TCACGTGCAGGAATATCTTG+AGG | + | chr5.4:56539869-56539888 | MS.gene26098:intron | 45.0% | |
| TCCTGATAGAGTTCTCTCCA+TGG | + | chr5.4:56538651-56538670 | MS.gene26098:CDS | 45.0% | |
| TTCGTCGGTCAAACTGCAAA+AGG | - | chr5.4:56539451-56539470 | None:intergenic | 45.0% | |
| TTTCCTCCGGTCCTTATAAG+AGG | + | chr5.4:56539414-56539433 | MS.gene26098:intron | 45.0% | |
| !! | CGTTGCTTACCGATTCTTGA+AGG | + | chr5.4:56539476-56539495 | MS.gene26098:intron | 45.0% |
| !! | TTTTAGGTGATCCTTGAGGG+TGG | + | chr5.4:56539104-56539123 | MS.gene26098:intron | 45.0% |
| AAAGTCACGAATCGCGATCC+GGG | + | chr5.4:56538993-56539012 | MS.gene26098:intron | 50.0% | |
| ACCACCTGTTGCATTGAGCA+AGG | - | chr5.4:56538677-56538696 | None:intergenic | 50.0% | |
| CAAAGTCACGAATCGCGATC+CGG | + | chr5.4:56538992-56539011 | MS.gene26098:intron | 50.0% | |
| GAACCTCTTATAAGGACCGG+AGG | - | chr5.4:56539420-56539439 | None:intergenic | 50.0% | |
| GATCGCGATTCGTGACTTTG+TGG | - | chr5.4:56538992-56539011 | None:intergenic | 50.0% | |
| GCCATGGAGAGAACTCTATC+AGG | - | chr5.4:56538655-56538674 | None:intergenic | 50.0% | |
| GCGATTCGTGACTTTGTGGA+GGG | - | chr5.4:56538988-56539007 | None:intergenic | 50.0% | |
| GGATTGGGTGTCTTTGTGGA+GGG | + | chr5.4:56538844-56538863 | MS.gene26098:intron | 50.0% | |
| TGTTGCATTGAGCAAGGCCA+TGG | - | chr5.4:56538671-56538690 | None:intergenic | 50.0% | |
| TTGCTCAATGCAACAGGTGG+TGG | + | chr5.4:56538676-56538695 | MS.gene26098:CDS | 50.0% | |
| ! | ATGGCCTTGCTCAATGCAAC+AGG | + | chr5.4:56538670-56538689 | MS.gene26098:CDS | 50.0% |
| ATAGCTGGGGAGAGGGGTTA+GGG | - | chr5.4:56539612-56539631 | None:intergenic | 55.0% | |
| CGCGATTCGTGACTTTGTGG+AGG | - | chr5.4:56538989-56539008 | None:intergenic | 55.0% | |
| GCCTTGCTCAATGCAACAGG+TGG | + | chr5.4:56538673-56538692 | MS.gene26098:CDS | 55.0% | |
| GGACTCAATTGCCACCCTCA+AGG | - | chr5.4:56539118-56539137 | None:intergenic | 55.0% | |
| GGGATTGGGTGTCTTTGTGG+AGG | + | chr5.4:56538843-56538862 | MS.gene26098:intron | 55.0% | |
| TATAGCTGGGGAGAGGGGTT+AGG | - | chr5.4:56539613-56539632 | None:intergenic | 55.0% | |
| TGTGACTAGCAAGCACCACC+CGG | - | chr5.4:56539014-56539033 | None:intergenic | 55.0% | |
| GTCACGAATCGCGATCCGGG+TGG | + | chr5.4:56538996-56539015 | MS.gene26098:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.4 | gene | 56538622 | 56540121 | 56538622 | ID=MS.gene26098 |
| chr5.4 | mRNA | 56538622 | 56540121 | 56538622 | ID=MS.gene26098.t1;Parent=MS.gene26098 |
| chr5.4 | exon | 56538622 | 56538717 | 56538622 | ID=MS.gene26098.t1.exon1;Parent=MS.gene26098.t1 |
| chr5.4 | CDS | 56538622 | 56538717 | 56538622 | ID=cds.MS.gene26098.t1;Parent=MS.gene26098.t1 |
| chr5.4 | exon | 56539879 | 56539932 | 56539879 | ID=MS.gene26098.t1.exon2;Parent=MS.gene26098.t1 |
| chr5.4 | CDS | 56539879 | 56539932 | 56539879 | ID=cds.MS.gene26098.t1;Parent=MS.gene26098.t1 |
| chr5.4 | exon | 56540002 | 56540121 | 56540002 | ID=MS.gene26098.t1.exon3;Parent=MS.gene26098.t1 |
| chr5.4 | CDS | 56540002 | 56540121 | 56540002 | ID=cds.MS.gene26098.t1;Parent=MS.gene26098.t1 |
| Gene Sequence |
| Protein sequence |
