Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene26728.t1 | XP_003609926.2 | 99.4 | 165 | 1 | 0 | 7 | 171 | 170 | 334 | 1.10E-91 | 345.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene26728.t1 | G7JR56 | 99.4 | 165 | 1 | 0 | 7 | 171 | 170 | 334 | 7.7e-92 | 345.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049230 | MS.gene26728 | 0.817788 | 2.75E-52 | -1.69E-46 |
| MS.gene049378 | MS.gene26728 | 0.870934 | 1.00E-66 | -1.69E-46 |
| MS.gene049647 | MS.gene26728 | 0.80909 | 2.25E-50 | -1.69E-46 |
| MS.gene049669 | MS.gene26728 | 0.841752 | 3.93E-58 | -1.69E-46 |
| MS.gene050105 | MS.gene26728 | 0.808681 | 2.75E-50 | -1.69E-46 |
| MS.gene050226 | MS.gene26728 | 0.815273 | 1.01E-51 | -1.69E-46 |
| MS.gene050227 | MS.gene26728 | 0.842237 | 2.92E-58 | -1.69E-46 |
| MS.gene050228 | MS.gene26728 | 0.835526 | 1.59E-56 | -1.69E-46 |
| MS.gene050303 | MS.gene26728 | 0.803265 | 3.79E-49 | -1.69E-46 |
| MS.gene050442 | MS.gene26728 | 0.807899 | 4.03E-50 | -1.69E-46 |
| MS.gene050623 | MS.gene26728 | -0.809483 | 1.85E-50 | -1.69E-46 |
| MS.gene050642 | MS.gene26728 | 0.811755 | 5.97E-51 | -1.69E-46 |
| MS.gene050719 | MS.gene26728 | 0.802481 | 5.50E-49 | -1.69E-46 |
| MS.gene050724 | MS.gene26728 | 0.806954 | 6.40E-50 | -1.69E-46 |
| MS.gene050750 | MS.gene26728 | 0.833375 | 5.53E-56 | -1.69E-46 |
| MS.gene050953 | MS.gene26728 | 0.82309 | 1.67E-53 | -1.69E-46 |
| MS.gene051064 | MS.gene26728 | 0.837894 | 3.97E-57 | -1.69E-46 |
| MS.gene051935 | MS.gene26728 | 0.816813 | 4.56E-52 | -1.69E-46 |
| MS.gene051983 | MS.gene26728 | 0.815182 | 1.05E-51 | -1.69E-46 |
| MS.gene052176 | MS.gene26728 | 0.853941 | 1.71E-61 | -1.69E-46 |
| MS.gene052190 | MS.gene26728 | 0.812998 | 3.20E-51 | -1.69E-46 |
| MS.gene052333 | MS.gene26728 | 0.847603 | 1.04E-59 | -1.69E-46 |
| MS.gene052389 | MS.gene26728 | 0.869404 | 3.18E-66 | -1.69E-46 |
| MS.gene052586 | MS.gene26728 | 0.832655 | 8.35E-56 | -1.69E-46 |
| MS.gene053166 | MS.gene26728 | 0.833605 | 4.84E-56 | -1.69E-46 |
| MS.gene054291 | MS.gene26728 | -0.824583 | 7.46E-54 | -1.69E-46 |
| MS.gene054405 | MS.gene26728 | 0.814308 | 1.65E-51 | -1.69E-46 |
| MS.gene054467 | MS.gene26728 | 0.801665 | 8.09E-49 | -1.69E-46 |
| MS.gene054468 | MS.gene26728 | 0.868531 | 6.10E-66 | -1.69E-46 |
| MS.gene054559 | MS.gene26728 | 0.808063 | 3.72E-50 | -1.69E-46 |
| MS.gene054610 | MS.gene26728 | 0.800061 | 1.72E-48 | -1.69E-46 |
| MS.gene05510 | MS.gene26728 | 0.802606 | 5.18E-49 | -1.69E-46 |
| MS.gene055701 | MS.gene26728 | 0.872855 | 2.31E-67 | -1.69E-46 |
| MS.gene055818 | MS.gene26728 | 0.814971 | 1.17E-51 | -1.69E-46 |
| MS.gene05604 | MS.gene26728 | 0.821907 | 3.15E-53 | -1.69E-46 |
| MS.gene056087 | MS.gene26728 | 0.803121 | 4.05E-49 | -1.69E-46 |
| MS.gene056506 | MS.gene26728 | 0.846528 | 2.05E-59 | -1.69E-46 |
| MS.gene05659 | MS.gene26728 | 0.804615 | 1.98E-49 | -1.69E-46 |
| MS.gene056979 | MS.gene26728 | 0.805746 | 1.15E-49 | -1.69E-46 |
| MS.gene057026 | MS.gene26728 | 0.897352 | 1.53E-76 | -1.69E-46 |
| MS.gene057156 | MS.gene26728 | -0.808791 | 2.60E-50 | -1.69E-46 |
| MS.gene058139 | MS.gene26728 | 0.812511 | 4.09E-51 | -1.69E-46 |
| MS.gene058498 | MS.gene26728 | 0.83059 | 2.70E-55 | -1.69E-46 |
| MS.gene058500 | MS.gene26728 | 0.825019 | 5.89E-54 | -1.69E-46 |
| MS.gene058502 | MS.gene26728 | 0.827509 | 1.50E-54 | -1.69E-46 |
| MS.gene059952 | MS.gene26728 | 0.803521 | 3.35E-49 | -1.69E-46 |
| MS.gene060322 | MS.gene26728 | 0.818346 | 2.06E-52 | -1.69E-46 |
| MS.gene060572 | MS.gene26728 | 0.852052 | 5.94E-61 | -1.69E-46 |
| MS.gene060781 | MS.gene26728 | 0.802135 | 6.48E-49 | -1.69E-46 |
| MS.gene060879 | MS.gene26728 | 0.880352 | 5.89E-70 | -1.69E-46 |
| MS.gene060942 | MS.gene26728 | 0.802172 | 6.36E-49 | -1.69E-46 |
| MS.gene061040 | MS.gene26728 | -0.847882 | 8.73E-60 | -1.69E-46 |
| MS.gene061114 | MS.gene26728 | -0.808099 | 3.66E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene26728.t1 | MTR_4g124450 | 99.394 | 165 | 1 | 0 | 7 | 171 | 170 | 334 | 2.95e-122 | 348 |
| MS.gene26728.t1 | MTR_2g044900 | 83.230 | 161 | 27 | 0 | 7 | 167 | 143 | 303 | 3.02e-100 | 291 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene26728.t1 | AT4G33140 | 72.840 | 162 | 44 | 0 | 7 | 168 | 191 | 352 | 9.22e-90 | 266 |
Find 36 sgRNAs with CRISPR-Local
Find 137 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CACCTACAAATCTCTGATTT+TGG | 0.208922 | 8.2:+8851900 | None:intergenic |
| CTCATCAACCAACTCATTCT+TGG | 0.309879 | 8.2:+8851566 | None:intergenic |
| GTCTCGGCAGAATGTAATTA+AGG | 0.345693 | 8.2:-8852015 | MS.gene26728:CDS |
| TGAATCGCCGTCTGAGCACC+TGG | 0.365340 | 8.2:+8852160 | None:intergenic |
| AAGACACCGTATTTCAAGTC+AGG | 0.400340 | 8.2:-8852196 | MS.gene26728:CDS |
| GACCAAAATCAGAGATTTGT+AGG | 0.415035 | 8.2:-8851902 | MS.gene26728:intron |
| ATATCCCATCAAGTGCAAAA+TGG | 0.416702 | 8.2:+8851928 | None:intergenic |
| TTCTGTCCAGTTCTTAACTT+TGG | 0.420976 | 8.2:+8851530 | None:intergenic |
| TGGTGACCAAAGTTAAGAAC+TGG | 0.453694 | 8.2:-8851536 | MS.gene26728:CDS |
| ATTATGAAAACTCATATCCT+TGG | 0.454107 | 8.2:-8851590 | MS.gene26728:CDS |
| TGAATCTCATGGAAAAGTCC+TGG | 0.458226 | 8.2:+8851960 | None:intergenic |
| GCAATAGAGTGTGCTGAAGT+TGG | 0.485346 | 8.2:-8851633 | MS.gene26728:CDS |
| GCCGTCTGAGCACCTGGGAG+AGG | 0.498666 | 8.2:+8852166 | None:intergenic |
| TTCTTAACTTTGGTCACCAA+AGG | 0.502489 | 8.2:+8851540 | None:intergenic |
| TTAAGGATCACACTATTGAA+TGG | 0.508954 | 8.2:-8851998 | MS.gene26728:CDS |
| GTTGGTTGATGAGCACCCTT+TGG | 0.511476 | 8.2:-8851556 | MS.gene26728:CDS |
| CCCTCTCCCAGGTGCTCAGA+CGG | 0.520221 | 8.2:-8852167 | MS.gene26728:CDS |
| CCGTCTGAGCACCTGGGAGA+GGG | 0.523562 | 8.2:+8852167 | None:intergenic |
| TAACAGGACTTTAAATGCCA+AGG | 0.528929 | 8.2:-8851682 | MS.gene26728:intron |
| ACCAAAATCATACGTTACAA+TGG | 0.539123 | 8.2:+8852111 | None:intergenic |
| TCTTAACTTTGGTCACCAAA+GGG | 0.540216 | 8.2:+8851541 | None:intergenic |
| ATTATCATCAATAAGAACCT+TGG | 0.545700 | 8.2:+8851665 | None:intergenic |
| TGAATCCCTGACTTGAAATA+CGG | 0.546358 | 8.2:+8852190 | None:intergenic |
| GGTTACCAAAGTGAATCTCA+TGG | 0.554939 | 8.2:+8851949 | None:intergenic |
| TGGAACTGTTCACGTGATGA+AGG | 0.557011 | 8.2:-8852605 | MS.gene26728:intron |
| AGACACCGTATTTCAAGTCA+GGG | 0.563775 | 8.2:-8852195 | MS.gene26728:CDS |
| TCAGGGATTCACCCTCTCCC+AGG | 0.563877 | 8.2:-8852178 | MS.gene26728:CDS |
| ACCAACTCATTCTTGGACCA+AGG | 0.564088 | 8.2:+8851573 | None:intergenic |
| GAATCTCATGGAAAAGTCCT+GGG | 0.569077 | 8.2:+8851961 | None:intergenic |
| AGTTAAGAACTGGACAGAAG+TGG | 0.584067 | 8.2:-8851526 | MS.gene26728:CDS |
| TGGATAGAGAAGAATTTCCC+AGG | 0.586791 | 8.2:-8851978 | MS.gene26728:CDS |
| AATCATACGTTACAATGGAT+AGG | 0.596490 | 8.2:+8852116 | None:intergenic |
| TCCTTGGTCCAAGAATGAGT+TGG | 0.633229 | 8.2:-8851574 | MS.gene26728:CDS |
| GAATCGCCGTCTGAGCACCT+GGG | 0.644858 | 8.2:+8852161 | None:intergenic |
| TTCTTATTGATGATAATCCG+CGG | 0.647289 | 8.2:-8851659 | MS.gene26728:CDS |
| GCACACTCTATTGCATACCG+CGG | 0.678841 | 8.2:+8851642 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AACATATAATAAATGTGATT+CGG | + | chr8.2:8852938-8852957 | None:intergenic | 15.0% |
| !!! | TTTCACTAATTTTATTCTTT+CGG | - | chr8.2:8852690-8852709 | MS.gene26728:intron | 15.0% |
| !! | ATATCTGTAACAGAAATTAA+GGG | + | chr8.2:8852352-8852371 | None:intergenic | 20.0% |
| !! | ATCACATTTATTATATGTTC+AGG | - | chr8.2:8852939-8852958 | MS.gene26728:intron | 20.0% |
| !! | CAATATTAAACAAATGTCAT+CGG | - | chr8.2:8851767-8851786 | MS.gene26728:intron | 20.0% |
| !! | GAAAAATTCATTAGAGAATT+GGG | + | chr8.2:8852607-8852626 | None:intergenic | 20.0% |
| !! | GATAAAAAATAGTACTTGAA+CGG | + | chr8.2:8853244-8853263 | None:intergenic | 20.0% |
| !! | TCTATATTAATACATAAGAC+TGG | + | chr8.2:8851842-8851861 | None:intergenic | 20.0% |
| !!! | AAGAAAAAATAACTGATTCA+AGG | + | chr8.2:8851493-8851512 | None:intergenic | 20.0% |
| !!! | AGTTTTCATAATCAAAAAGT+AGG | + | chr8.2:8853378-8853397 | None:intergenic | 20.0% |
| !!! | TCAATTTTTTAAGCAGTATT+AGG | - | chr8.2:8851593-8851612 | MS.gene26728:CDS | 20.0% |
| !!! | TTTTATCAAGATTTTTGTGT+AGG | - | chr8.2:8852663-8852682 | MS.gene26728:intron | 20.0% |
| ! | ATTATCATCAATAAGAACCT+TGG | + | chr8.2:8853314-8853333 | None:intergenic | 25.0% |
| ! | ATTATGAAAACTCATATCCT+TGG | - | chr8.2:8853386-8853405 | MS.gene26728:intron | 25.0% |
| ! | CAAATTTACAACAAAAGCAA+TGG | + | chr8.2:8852299-8852318 | None:intergenic | 25.0% |
| ! | CATATCTGTAACAGAAATTA+AGG | + | chr8.2:8852353-8852372 | None:intergenic | 25.0% |
| ! | CCTATAAATCTATGTTCAAA+GGG | - | chr8.2:8852544-8852563 | MS.gene26728:intron | 25.0% |
| ! | CCTTTGAACATAGATTTATA+GGG | + | chr8.2:8852546-8852565 | None:intergenic | 25.0% |
| ! | CGATGACATTTGTTTAATAT+TGG | + | chr8.2:8851769-8851788 | None:intergenic | 25.0% |
| ! | CTTAATTTCTGTTACAGATA+TGG | - | chr8.2:8852351-8852370 | MS.gene26728:intron | 25.0% |
| ! | GAAAGATTTAGACAGAATTT+GGG | + | chr8.2:8852171-8852190 | None:intergenic | 25.0% |
| ! | GGAAAAATTCATTAGAGAAT+TGG | + | chr8.2:8852608-8852627 | None:intergenic | 25.0% |
| ! | TATTAGAGAAACCATTAGAA+AGG | - | chr8.2:8851955-8851974 | MS.gene26728:CDS | 25.0% |
| ! | TTCCTAATTCTTGTTCAAAA+GGG | - | chr8.2:8852624-8852643 | MS.gene26728:intron | 25.0% |
| ! | TTTATTATATGTTCAGGTCT+CGG | - | chr8.2:8852945-8852964 | MS.gene26728:intron | 25.0% |
| ! | TTTCCTAATTCTTGTTCAAA+AGG | - | chr8.2:8852623-8852642 | MS.gene26728:intron | 25.0% |
| !! | TGATATGACTTGATTTTCTT+TGG | - | chr8.2:8853130-8853149 | MS.gene26728:intron | 25.0% |
| !! | TTAATTTTCTTTCGTGATAG+AGG | - | chr8.2:8851911-8851930 | MS.gene26728:CDS | 25.0% |
| !!! | AGAACTACTTTTTCTATGAA+TGG | - | chr8.2:8852203-8852222 | MS.gene26728:CDS | 25.0% |
| !!! | ATAGCAAAATTGTTCTAAAG+AGG | + | chr8.2:8852408-8852427 | None:intergenic | 25.0% |
| !!! | GAACTACTTTTTCTATGAAT+GGG | - | chr8.2:8852204-8852223 | MS.gene26728:CDS | 25.0% |
| !!! | TTCTTTAAGGTATCTTTTGT+TGG | - | chr8.2:8851698-8851717 | MS.gene26728:intron | 25.0% |
| AACCATTAGAAAGGATTTAG+AGG | - | chr8.2:8851964-8851983 | MS.gene26728:CDS | 30.0% | |
| AATACATAAGACTGGAGAAT+AGG | + | chr8.2:8851834-8851853 | None:intergenic | 30.0% | |
| AATCATACGTTACAATGGAT+AGG | + | chr8.2:8852863-8852882 | None:intergenic | 30.0% | |
| ACCAAAATCATACGTTACAA+TGG | + | chr8.2:8852868-8852887 | None:intergenic | 30.0% | |
| AGTATTAGGAAATTTCGTGT+CGG | - | chr8.2:8851607-8851626 | MS.gene26728:CDS | 30.0% | |
| ATACATAAGACTGGAGAATA+GGG | + | chr8.2:8851833-8851852 | None:intergenic | 30.0% | |
| ATAGAGAAAAACAGATGAAG+AGG | + | chr8.2:8853111-8853130 | None:intergenic | 30.0% | |
| ATCATAATTCAGTTCCTTGT+TGG | - | chr8.2:8852238-8852257 | MS.gene26728:intron | 30.0% | |
| CACAAATAAGCCTAATTTGA+GGG | + | chr8.2:8851886-8851905 | None:intergenic | 30.0% | |
| CATTGTGTACAGAAAATTGT+TGG | - | chr8.2:8852430-8852449 | MS.gene26728:intron | 30.0% | |
| CCCTATAAATCTATGTTCAA+AGG | - | chr8.2:8852543-8852562 | MS.gene26728:intron | 30.0% | |
| CCCTTTGAACATAGATTTAT+AGG | + | chr8.2:8852547-8852566 | None:intergenic | 30.0% | |
| GAACTTGTACAAATCAAACA+AGG | + | chr8.2:8852469-8852488 | None:intergenic | 30.0% | |
| GGAAAGATTTAGACAGAATT+TGG | + | chr8.2:8852172-8852191 | None:intergenic | 30.0% | |
| GTTCTGTCATAAACCAAATT+TGG | + | chr8.2:8852004-8852023 | None:intergenic | 30.0% | |
| TGATGTGAATCTAAACAGTA+GGG | + | chr8.2:8853182-8853201 | None:intergenic | 30.0% | |
| TTAAGGATCACACTATTGAA+TGG | - | chr8.2:8852978-8852997 | MS.gene26728:intron | 30.0% | |
| TTATTCTTTCGGATGACTAA+TGG | - | chr8.2:8852701-8852720 | MS.gene26728:intron | 30.0% | |
| TTTGTGCATATGCTTGAATT+TGG | - | chr8.2:8852315-8852334 | MS.gene26728:intron | 30.0% | |
| ! | CAACAATTTTCTGTACACAA+TGG | + | chr8.2:8852432-8852451 | None:intergenic | 30.0% |
| ! | GTTTCTCTAATAGTTTTCCT+AGG | + | chr8.2:8851947-8851966 | None:intergenic | 30.0% |
| ! | TCCATTGTAACGTATGATTT+TGG | - | chr8.2:8852864-8852883 | MS.gene26728:intron | 30.0% |
| ! | TTCTTATTGATGATAATCCG+CGG | - | chr8.2:8853317-8853336 | MS.gene26728:intron | 30.0% |
| !! | GTAACGTATGATTTTGGTAT+TGG | - | chr8.2:8852870-8852889 | MS.gene26728:intron | 30.0% |
| !!! | AAGTTTTGTTTTCACGATTG+AGG | - | chr8.2:8852577-8852596 | MS.gene26728:intron | 30.0% |
| !!! | CTTGTTTGTTGTTGTTTTGT+TGG | - | chr8.2:8852074-8852093 | MS.gene26728:intron | 30.0% |
| AAAACAGATGAAGAGGATCA+AGG | + | chr8.2:8853104-8853123 | None:intergenic | 35.0% | |
| AACCTTAAGAGGAATCTTGT+CGG | - | chr8.2:8852902-8852921 | MS.gene26728:intron | 35.0% | |
| ATATCCCATCAAGTGCAAAA+TGG | + | chr8.2:8853051-8853070 | None:intergenic | 35.0% | |
| CACACATCAGAGAATATATG+TGG | + | chr8.2:8851561-8851580 | None:intergenic | 35.0% | |
| GACCAAAATCAGAGATTTGT+AGG | - | chr8.2:8853074-8853093 | MS.gene26728:intron | 35.0% | |
| GACCTCTAAATCCTTTCTAA+TGG | + | chr8.2:8851969-8851988 | None:intergenic | 35.0% | |
| GACTAAAAAATTCACGTGTC+AGG | + | chr8.2:8852122-8852141 | None:intergenic | 35.0% | |
| GCACAAATAAGCCTAATTTG+AGG | + | chr8.2:8851887-8851906 | None:intergenic | 35.0% | |
| GGAAGAAAAACAGTAGGAAA+AGG | + | chr8.2:8853208-8853227 | None:intergenic | 35.0% | |
| GGACTTTCATTAACCTTAAG+AGG | - | chr8.2:8852891-8852910 | MS.gene26728:intron | 35.0% | |
| GTGATGTGAATCTAAACAGT+AGG | + | chr8.2:8853183-8853202 | None:intergenic | 35.0% | |
| TAAACAAATGTCATCGGAAC+AGG | - | chr8.2:8851773-8851792 | MS.gene26728:intron | 35.0% | |
| TAACAGGACTTTAAATGCCA+AGG | - | chr8.2:8853294-8853313 | MS.gene26728:intron | 35.0% | |
| TACATAAGACTGGAGAATAG+GGG | + | chr8.2:8851832-8851851 | None:intergenic | 35.0% | |
| TCATGTGTACGAGTTCTTTA+AGG | - | chr8.2:8851685-8851704 | MS.gene26728:intron | 35.0% | |
| TCTTAACTTTGGTCACCAAA+GGG | + | chr8.2:8853438-8853457 | None:intergenic | 35.0% | |
| TGGTTTATGACAGAACACTA+TGG | - | chr8.2:8852008-8852027 | MS.gene26728:CDS | 35.0% | |
| TTCTGTCCAGTTCTTAACTT+TGG | + | chr8.2:8853449-8853468 | None:intergenic | 35.0% | |
| TTCTTAACTTTGGTCACCAA+AGG | + | chr8.2:8853439-8853458 | None:intergenic | 35.0% | |
| ! | CAATGAGTTGGATCCAAATT+TGG | - | chr8.2:8851988-8852007 | MS.gene26728:CDS | 35.0% |
| ! | CACCTACAAATCTCTGATTT+TGG | + | chr8.2:8853079-8853098 | None:intergenic | 35.0% |
| ! | CTTTTCCATGAGATTCACTT+TGG | - | chr8.2:8853022-8853041 | MS.gene26728:intron | 35.0% |
| ! | GACCCTTTTGAACAAGAATT+AGG | + | chr8.2:8852629-8852648 | None:intergenic | 35.0% |
| ! | GTAACCATTTTGCACTTGAT+GGG | - | chr8.2:8853044-8853063 | MS.gene26728:intron | 35.0% |
| ! | TGAATCCCTGACTTGAAATA+CGG | + | chr8.2:8852789-8852808 | None:intergenic | 35.0% |
| !! | AAGTCTCTCTCTTTGAAATC+TGG | - | chr8.2:8852497-8852516 | MS.gene26728:intron | 35.0% |
| !! | ACTTGCTGTTTCTCATTAAC+AGG | - | chr8.2:8853278-8853297 | MS.gene26728:intron | 35.0% |
| !! | GTTCTAGGAAGAAAAACAGT+AGG | + | chr8.2:8853214-8853233 | None:intergenic | 35.0% |
| !! | TTGAACGGATTAAGAGTTCT+AGG | + | chr8.2:8853229-8853248 | None:intergenic | 35.0% |
| !!! | GTTGTTGTTTTGTTGGTCAA+TGG | - | chr8.2:8852081-8852100 | MS.gene26728:intron | 35.0% |
| AAGTAGTTCTCTTCAGCAAG+AGG | + | chr8.2:8852193-8852212 | None:intergenic | 40.0% | |
| AATCTAAACAGTAGGGAAGG+AGG | + | chr8.2:8853175-8853194 | None:intergenic | 40.0% | |
| ACATAAGACTGGAGAATAGG+GGG | + | chr8.2:8851831-8851850 | None:intergenic | 40.0% | |
| ACCTTAAGAGGAATCTTGTC+GGG | - | chr8.2:8852903-8852922 | MS.gene26728:intron | 40.0% | |
| AGATACACCTAAAGCCAACA+AGG | + | chr8.2:8852255-8852274 | None:intergenic | 40.0% | |
| AGTTAAGAACTGGACAGAAG+TGG | - | chr8.2:8853450-8853469 | MS.gene26728:intron | 40.0% | |
| CGATCGATGTTCAACAGATA+TGG | + | chr8.2:8852144-8852163 | None:intergenic | 40.0% | |
| CTCATCAACCAACTCATTCT+TGG | + | chr8.2:8853413-8853432 | None:intergenic | 40.0% | |
| GAAAGCTTTGCCCTCAAATT+AGG | - | chr8.2:8851873-8851892 | MS.gene26728:intron | 40.0% | |
| GAATCTCATGGAAAAGTCCT+GGG | + | chr8.2:8853018-8853037 | None:intergenic | 40.0% | |
| GGATTTAGAGGTCAATGAGT+TGG | - | chr8.2:8851976-8851995 | MS.gene26728:CDS | 40.0% | |
| GGTTACCAAAGTGAATCTCA+TGG | + | chr8.2:8853030-8853049 | None:intergenic | 40.0% | |
| GTCTCGGCAGAATGTAATTA+AGG | - | chr8.2:8852961-8852980 | MS.gene26728:intron | 40.0% | |
| GTGAATCTAAACAGTAGGGA+AGG | + | chr8.2:8853178-8853197 | None:intergenic | 40.0% | |
| TATCTGTTGAACATCGATCG+CGG | - | chr8.2:8852144-8852163 | MS.gene26728:CDS | 40.0% | |
| TGAATCTCATGGAAAAGTCC+TGG | + | chr8.2:8853019-8853038 | None:intergenic | 40.0% | |
| TGGATAGAGAAGAATTTCCC+AGG | - | chr8.2:8852998-8853017 | MS.gene26728:intron | 40.0% | |
| TGGTGACCAAAGTTAAGAAC+TGG | - | chr8.2:8853440-8853459 | MS.gene26728:intron | 40.0% | |
| TTCTTTCGTGATAGAGGTAG+AGG | - | chr8.2:8851917-8851936 | MS.gene26728:CDS | 40.0% | |
| ! | AAGACACCGTATTTCAAGTC+AGG | - | chr8.2:8852780-8852799 | MS.gene26728:intron | 40.0% |
| ! | ACAGAAATTAAGGGTGCATC+AGG | + | chr8.2:8852343-8852362 | None:intergenic | 40.0% |
| ! | AGACACCGTATTTCAAGTCA+GGG | - | chr8.2:8852781-8852800 | MS.gene26728:intron | 40.0% |
| ! | GGTAACCATTTTGCACTTGA+TGG | - | chr8.2:8853043-8853062 | MS.gene26728:intron | 40.0% |
| !! | TTCAGTTCCTTGTTGGCTTT+AGG | - | chr8.2:8852245-8852264 | MS.gene26728:intron | 40.0% |
| !! | TTGTTGGCTTTAGGTGTATC+TGG | - | chr8.2:8852254-8852273 | MS.gene26728:intron | 40.0% |
| ACCAACTCATTCTTGGACCA+AGG | + | chr8.2:8853406-8853425 | None:intergenic | 45.0% | |
| ATAGAGGTAGAGGAAGACCT+AGG | - | chr8.2:8851927-8851946 | MS.gene26728:CDS | 45.0% | |
| GCAATAGAGTGTGCTGAAGT+TGG | - | chr8.2:8853343-8853362 | MS.gene26728:intron | 45.0% | |
| TCCCGACAAGATTCCTCTTA+AGG | + | chr8.2:8852907-8852926 | None:intergenic | 45.0% | |
| TCCTTGGTCCAAGAATGAGT+TGG | - | chr8.2:8853402-8853421 | MS.gene26728:intron | 45.0% | |
| TGGAACTGTTCACGTGATGA+AGG | - | chr8.2:8852371-8852390 | MS.gene26728:intron | 45.0% | |
| ! | AAGCCTTATCCCACTAAGTG+GGG | + | chr8.2:8852057-8852076 | None:intergenic | 45.0% |
| ! | ACAAGCCTTATCCCACTAAG+TGG | + | chr8.2:8852059-8852078 | None:intergenic | 45.0% |
| ! | CAAGCCTTATCCCACTAAGT+GGG | + | chr8.2:8852058-8852077 | None:intergenic | 45.0% |
| ! | CTTTCGGATGACTAATGGAC+TGG | - | chr8.2:8852706-8852725 | MS.gene26728:intron | 45.0% |
| CTTATCCCACTAAGTGGGGT+CGG | + | chr8.2:8852053-8852072 | None:intergenic | 50.0% | |
| GCACACTCTATTGCATACCG+CGG | + | chr8.2:8853337-8853356 | None:intergenic | 50.0% | |
| !! | CGGATGACTAATGGACTGGT+TGG | - | chr8.2:8852710-8852729 | MS.gene26728:intron | 50.0% |
| !! | GTTGGTTGATGAGCACCCTT+TGG | - | chr8.2:8853420-8853439 | MS.gene26728:intron | 50.0% |
| ACTAAGTGGGGTCGGCTACA+TGG | + | chr8.2:8852045-8852064 | None:intergenic | 55.0% | |
| ATGTAGCCGACCCCACTTAG+TGG | - | chr8.2:8852044-8852063 | MS.gene26728:intron | 55.0% | |
| CGACCCCACTTAGTGGGATA+AGG | - | chr8.2:8852051-8852070 | MS.gene26728:intron | 55.0% | |
| TGTAGCCGACCCCACTTAGT+GGG | - | chr8.2:8852045-8852064 | MS.gene26728:intron | 55.0% | |
| GAATCGCCGTCTGAGCACCT+GGG | + | chr8.2:8852818-8852837 | None:intergenic | 60.0% | |
| TCAGGGATTCACCCTCTCCC+AGG | - | chr8.2:8852798-8852817 | MS.gene26728:intron | 60.0% | |
| TGAATCGCCGTCTGAGCACC+TGG | + | chr8.2:8852819-8852838 | None:intergenic | 60.0% | |
| CCCTCTCCCAGGTGCTCAGA+CGG | - | chr8.2:8852809-8852828 | MS.gene26728:intron | 65.0% | |
| CCGTCTGAGCACCTGGGAGA+GGG | + | chr8.2:8852812-8852831 | None:intergenic | 65.0% | |
| GCCGTCTGAGCACCTGGGAG+AGG | + | chr8.2:8852813-8852832 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.2 | gene | 8851482 | 8853516 | 8851482 | ID=MS.gene26728 |
| chr8.2 | mRNA | 8851482 | 8853516 | 8851482 | ID=MS.gene26728.t1;Parent=MS.gene26728 |
| chr8.2 | exon | 8853499 | 8853516 | 8853499 | ID=MS.gene26728.t1.exon1;Parent=MS.gene26728.t1 |
| chr8.2 | CDS | 8853499 | 8853516 | 8853499 | ID=cds.MS.gene26728.t1;Parent=MS.gene26728.t1 |
| chr8.2 | exon | 8852606 | 8852630 | 8852606 | ID=MS.gene26728.t1.exon2;Parent=MS.gene26728.t1 |
| chr8.2 | CDS | 8852606 | 8852630 | 8852606 | ID=cds.MS.gene26728.t1;Parent=MS.gene26728.t1 |
| chr8.2 | exon | 8852124 | 8852244 | 8852124 | ID=MS.gene26728.t1.exon3;Parent=MS.gene26728.t1 |
| chr8.2 | CDS | 8852124 | 8852244 | 8852124 | ID=cds.MS.gene26728.t1;Parent=MS.gene26728.t1 |
| chr8.2 | exon | 8851903 | 8852037 | 8851903 | ID=MS.gene26728.t1.exon4;Parent=MS.gene26728.t1 |
| chr8.2 | CDS | 8851903 | 8852037 | 8851903 | ID=cds.MS.gene26728.t1;Parent=MS.gene26728.t1 |
| chr8.2 | exon | 8851482 | 8851698 | 8851482 | ID=MS.gene26728.t1.exon5;Parent=MS.gene26728.t1 |
| chr8.2 | CDS | 8851482 | 8851698 | 8851482 | ID=cds.MS.gene26728.t1;Parent=MS.gene26728.t1 |
| Gene Sequence |
| Protein sequence |
