Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene28409.t1 | XP_003630218.2 | 95.4 | 304 | 13 | 1 | 1 | 304 | 1 | 303 | 2.60E-117 | 431.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene28409.t1 | Q9ASQ2 | 48.5 | 241 | 112 | 4 | 68 | 300 | 70 | 306 | 2.4e-50 | 200.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene28409.t1 | A0A0C3Y601 | 95.4 | 304 | 13 | 1 | 1 | 304 | 1 | 303 | 1.9e-117 | 431.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene28409.t1 | TF | MYB-related |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049283 | MS.gene28409 | 0.808152 | 3.56E-50 | -1.69E-46 |
| MS.gene049411 | MS.gene28409 | 0.839087 | 1.95E-57 | -1.69E-46 |
| MS.gene050085 | MS.gene28409 | 0.812457 | 4.20E-51 | -1.69E-46 |
| MS.gene050646 | MS.gene28409 | 0.818351 | 2.05E-52 | -1.69E-46 |
| MS.gene050654 | MS.gene28409 | 0.822568 | 2.21E-53 | -1.69E-46 |
| MS.gene050689 | MS.gene28409 | 0.81742 | 3.33E-52 | -1.69E-46 |
| MS.gene050752 | MS.gene28409 | 0.852205 | 5.38E-61 | -1.69E-46 |
| MS.gene050838 | MS.gene28409 | 0.864261 | 1.38E-64 | -1.69E-46 |
| MS.gene050945 | MS.gene28409 | 0.838538 | 2.71E-57 | -1.69E-46 |
| MS.gene050955 | MS.gene28409 | 0.837098 | 6.35E-57 | -1.69E-46 |
| MS.gene051003 | MS.gene28409 | 0.893641 | 5.20E-75 | -1.69E-46 |
| MS.gene051043 | MS.gene28409 | 0.809011 | 2.34E-50 | -1.69E-46 |
| MS.gene051233 | MS.gene28409 | 0.825114 | 5.59E-54 | -1.69E-46 |
| MS.gene051234 | MS.gene28409 | 0.869635 | 2.67E-66 | -1.69E-46 |
| MS.gene051343 | MS.gene28409 | 0.868476 | 6.35E-66 | -1.69E-46 |
| MS.gene05188 | MS.gene28409 | 0.815713 | 8.03E-52 | -1.69E-46 |
| MS.gene051902 | MS.gene28409 | 0.823131 | 1.63E-53 | -1.69E-46 |
| MS.gene051975 | MS.gene28409 | 0.804599 | 2.00E-49 | -1.69E-46 |
| MS.gene052072 | MS.gene28409 | 0.825478 | 4.59E-54 | -1.69E-46 |
| MS.gene052335 | MS.gene28409 | 0.808404 | 3.15E-50 | -1.69E-46 |
| MS.gene052342 | MS.gene28409 | 0.830007 | 3.74E-55 | -1.69E-46 |
| MS.gene052479 | MS.gene28409 | 0.836079 | 1.15E-56 | -1.69E-46 |
| MS.gene052947 | MS.gene28409 | 0.810462 | 1.14E-50 | -1.69E-46 |
| MS.gene053058 | MS.gene28409 | 0.857553 | 1.51E-62 | -1.69E-46 |
| MS.gene053143 | MS.gene28409 | 0.800683 | 1.28E-48 | -1.69E-46 |
| MS.gene053564 | MS.gene28409 | 0.824855 | 6.44E-54 | -1.69E-46 |
| MS.gene054004 | MS.gene28409 | 0.836439 | 9.35E-57 | -1.69E-46 |
| MS.gene054403 | MS.gene28409 | 0.853597 | 2.15E-61 | -1.69E-46 |
| MS.gene055979 | MS.gene28409 | 0.807769 | 4.30E-50 | -1.69E-46 |
| MS.gene056097 | MS.gene28409 | 0.81626 | 6.06E-52 | -1.69E-46 |
| MS.gene056181 | MS.gene28409 | 0.809708 | 1.66E-50 | -1.69E-46 |
| MS.gene056578 | MS.gene28409 | 0.806284 | 8.86E-50 | -1.69E-46 |
| MS.gene056752 | MS.gene28409 | 0.80946 | 1.87E-50 | -1.69E-46 |
| MS.gene056992 | MS.gene28409 | 0.805152 | 1.53E-49 | -1.69E-46 |
| MS.gene057102 | MS.gene28409 | 0.813016 | 3.17E-51 | -1.69E-46 |
| MS.gene057694 | MS.gene28409 | 0.80527 | 1.45E-49 | -1.69E-46 |
| MS.gene057705 | MS.gene28409 | 0.832304 | 1.02E-55 | -1.69E-46 |
| MS.gene05781 | MS.gene28409 | 0.860873 | 1.52E-63 | -1.69E-46 |
| MS.gene057890 | MS.gene28409 | -0.802513 | 5.41E-49 | -1.69E-46 |
| MS.gene058054 | MS.gene28409 | 0.818095 | 2.34E-52 | -1.69E-46 |
| MS.gene058074 | MS.gene28409 | 0.809241 | 2.09E-50 | -1.69E-46 |
| MS.gene058261 | MS.gene28409 | 0.838294 | 3.13E-57 | -1.69E-46 |
| MS.gene059146 | MS.gene28409 | 0.873619 | 1.28E-67 | -1.69E-46 |
| MS.gene059227 | MS.gene28409 | 0.80242 | 5.66E-49 | -1.69E-46 |
| MS.gene06011 | MS.gene28409 | 0.826504 | 2.62E-54 | -1.69E-46 |
| MS.gene060763 | MS.gene28409 | 0.842754 | 2.13E-58 | -1.69E-46 |
| MS.gene061100 | MS.gene28409 | 0.861859 | 7.63E-64 | -1.69E-46 |
| MS.gene061160 | MS.gene28409 | 0.813033 | 3.14E-51 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene28409.t1 | MTR_8g093080 | 96.382 | 304 | 10 | 1 | 1 | 304 | 1 | 303 | 0.0 | 589 |
| MS.gene28409.t1 | MTR_3g113680 | 29.439 | 214 | 96 | 2 | 140 | 301 | 442 | 652 | 4.05e-22 | 97.1 |
| MS.gene28409.t1 | MTR_7g109430 | 29.577 | 213 | 95 | 2 | 141 | 301 | 443 | 652 | 1.06e-21 | 95.5 |
| MS.gene28409.t1 | MTR_3g114060 | 29.665 | 209 | 96 | 2 | 141 | 301 | 128 | 333 | 1.08e-21 | 93.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene28409.t1 | AT5G45420 | 52.351 | 319 | 120 | 10 | 1 | 300 | 1 | 306 | 8.00e-84 | 255 |
| MS.gene28409.t1 | AT5G45420 | 52.351 | 319 | 120 | 10 | 1 | 300 | 1 | 306 | 8.00e-84 | 255 |
| MS.gene28409.t1 | AT5G45420 | 52.351 | 319 | 120 | 10 | 1 | 300 | 1 | 306 | 8.00e-84 | 255 |
| MS.gene28409.t1 | AT3G11450 | 33.158 | 190 | 88 | 3 | 150 | 301 | 458 | 646 | 3.73e-22 | 97.1 |
| MS.gene28409.t1 | AT5G06110 | 29.902 | 204 | 99 | 3 | 139 | 299 | 458 | 660 | 1.86e-18 | 86.3 |
| MS.gene28409.t1 | AT5G06110 | 29.902 | 204 | 99 | 3 | 139 | 299 | 458 | 660 | 1.86e-18 | 86.3 |
Find 93 sgRNAs with CRISPR-Local
Find 99 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGAACGATTTCGTTGGTTTC+TGG | 0.174909 | 4.4:+8917559 | None:intergenic |
| AAAGTTGCTGCTGCTGTTCC+TGG | 0.293700 | 4.4:-8916829 | MS.gene28409:CDS |
| TCGGTTGAGGTTTCCTGATC+GGG | 0.354119 | 4.4:+8917357 | None:intergenic |
| GTGAGAAAGTTGAAAGTGTT+TGG | 0.354834 | 4.4:-8916924 | MS.gene28409:CDS |
| CAGAATTGAAGAAAGGGTTT+CGG | 0.376978 | 4.4:-8916774 | MS.gene28409:CDS |
| GGGTTTCGGACTGCAAAATC+TGG | 0.390024 | 4.4:-8916760 | MS.gene28409:CDS |
| TTTGCATTCTCTCTCCTCCT+TGG | 0.398248 | 4.4:-8917447 | MS.gene28409:CDS |
| TTCGCTCCAATCTCCATTAC+CGG | 0.403852 | 4.4:-8917420 | MS.gene28409:CDS |
| TTGAAGAATCGAAATGGAAA+TGG | 0.409406 | 4.4:-8917237 | MS.gene28409:CDS |
| ATCGTCCGATCTGCGTTGCT+TGG | 0.410728 | 4.4:+8917296 | None:intergenic |
| CATCTCATAGCAACATCTTT+CGG | 0.412166 | 4.4:+8916856 | None:intergenic |
| AAAGGAGTTGGGAGAGAAGA+AGG | 0.421544 | 4.4:-8917037 | MS.gene28409:CDS |
| AGAGAAGAAGGTTGATGATT+CGG | 0.423910 | 4.4:-8917025 | MS.gene28409:CDS |
| GATAAGAGACTTGTTGAAGA+AGG | 0.424391 | 4.4:-8916964 | MS.gene28409:CDS |
| CGGGTGCACCGGACTGATAC+AGG | 0.433545 | 4.4:+8917604 | None:intergenic |
| TGGAAACGGTGTTGCATTGT+CGG | 0.435353 | 4.4:-8917217 | MS.gene28409:CDS |
| ACGGGAATCGCCGCCGGTAA+TGG | 0.437783 | 4.4:+8917407 | None:intergenic |
| TGCCGTCAATTTCCCCGATC+AGG | 0.438106 | 4.4:-8917370 | MS.gene28409:CDS |
| TCGCCGCCGGTAATGGAGAT+TGG | 0.447359 | 4.4:+8917414 | None:intergenic |
| AGAATTGCAGAATTGAAGAA+AGG | 0.450045 | 4.4:-8916781 | MS.gene28409:CDS |
| ATCGGTTGAGGTTTCCTGAT+CGG | 0.454293 | 4.4:+8917356 | None:intergenic |
| GAGGCGATAGCGGAGGCATT+CGG | 0.458797 | 4.4:-8917096 | MS.gene28409:CDS |
| GATTTCGTTGGTTTCTGGTA+AGG | 0.461575 | 4.4:+8917564 | None:intergenic |
| TTCAGTGGCCGCGGGTGCAC+CGG | 0.461986 | 4.4:+8917593 | None:intergenic |
| CGAAAGATGTTGCTATGAGA+TGG | 0.463082 | 4.4:-8916855 | MS.gene28409:CDS |
| GTTTCGTTGAAGAATCGAAA+TGG | 0.464225 | 4.4:-8917243 | MS.gene28409:CDS |
| CAACCGATGAGGATGATTCC+AGG | 0.465520 | 4.4:-8917341 | MS.gene28409:CDS |
| GGCGATTCCCGTGTCGGCCG+TGG | 0.468929 | 4.4:-8917396 | MS.gene28409:CDS |
| GGAATCATCCTCATCGGTTG+AGG | 0.470477 | 4.4:+8917344 | None:intergenic |
| TCGATTTGAGCGGTTCAGAT+TGG | 0.470526 | 4.4:+8917481 | None:intergenic |
| AGGCTGTGATTCAGTGGCCG+CGG | 0.476901 | 4.4:+8917584 | None:intergenic |
| CGGCATGACCACGGCCGACA+CGG | 0.478990 | 4.4:+8917388 | None:intergenic |
| TTCAACGAAACCACCGGCGC+TGG | 0.480043 | 4.4:+8917255 | None:intergenic |
| GGCATGACCACGGCCGACAC+GGG | 0.485981 | 4.4:+8917389 | None:intergenic |
| AAGAGACTTGTTGAAGAAGG+AGG | 0.496476 | 4.4:-8916961 | MS.gene28409:CDS |
| TCCCACCGTCCTGGTTTCCC+CGG | 0.499822 | 4.4:+8917117 | None:intergenic |
| GAAGATTGAAGAGATTGAAA+CGG | 0.500067 | 4.4:+8917527 | None:intergenic |
| GGCTGTGATTCAGTGGCCGC+GGG | 0.502205 | 4.4:+8917585 | None:intergenic |
| GAATTGCAGAATTGAAGAAA+GGG | 0.503367 | 4.4:-8916780 | MS.gene28409:CDS |
| CAAGCTGCTTTCGATTTCCC+AGG | 0.506123 | 4.4:+8916811 | None:intergenic |
| TGCATTGTCGGCGGCGACAG+TGG | 0.507595 | 4.4:-8917205 | MS.gene28409:CDS |
| CACCGTCCTGGTTTCCCCGG+TGG | 0.513685 | 4.4:+8917120 | None:intergenic |
| GGCGACAGTGGAGGAGGAGA+AGG | 0.516580 | 4.4:-8917193 | MS.gene28409:CDS |
| GCCGACACGGGAATCGCCGC+CGG | 0.516860 | 4.4:+8917401 | None:intergenic |
| GGTGAAGAAATCAAAGGAGT+TGG | 0.518193 | 4.4:-8917049 | MS.gene28409:CDS |
| GTGAAGAAATCAAAGGAGTT+GGG | 0.518866 | 4.4:-8917048 | MS.gene28409:CDS |
| CGATTCTTCAACGAAACCAC+CGG | 0.522401 | 4.4:+8917249 | None:intergenic |
| GTCGGCGGCGACAGTGGAGG+AGG | 0.522597 | 4.4:-8917199 | MS.gene28409:CDS |
| GAAGGAGGAGATTTAGCGAC+GGG | 0.533839 | 4.4:-8916946 | MS.gene28409:CDS |
| TCTGAAGAAGAGAAAAGCGT+TGG | 0.535242 | 4.4:-8916986 | MS.gene28409:CDS |
| GCTATCGCCTCCCACCGTCC+TGG | 0.536007 | 4.4:+8917108 | None:intergenic |
| CAGTGGAGGAGGAGAAGGAA+TGG | 0.536336 | 4.4:-8917188 | MS.gene28409:CDS |
| CTCTGTAGTAGCTCCAGCGC+CGG | 0.539400 | 4.4:-8917268 | MS.gene28409:CDS |
| AATCGAAATGGAAATGGAAA+CGG | 0.539438 | 4.4:-8917231 | MS.gene28409:CDS |
| ACCGGCGGCGATTCCCGTGT+CGG | 0.539977 | 4.4:-8917402 | MS.gene28409:CDS |
| TTTCCTGGAATCATCCTCAT+CGG | 0.539989 | 4.4:+8917338 | None:intergenic |
| AGGACGGTGGGAGGCGATAG+CGG | 0.545275 | 4.4:-8917106 | MS.gene28409:CDS |
| GGGGAAACCAGGACGGTGGG+AGG | 0.546154 | 4.4:-8917115 | MS.gene28409:CDS |
| CAGATCCAAGCAACGCAGAT+CGG | 0.552256 | 4.4:-8917301 | MS.gene28409:CDS |
| AAGTTGCTGCTGCTGTTCCT+GGG | 0.554829 | 4.4:-8916828 | MS.gene28409:CDS |
| ACCGGGGAAACCAGGACGGT+GGG | 0.559178 | 4.4:-8917118 | MS.gene28409:CDS |
| CCGAAGTTCCTGTATCAGTC+CGG | 0.563162 | 4.4:-8917612 | MS.gene28409:CDS |
| GGCATTCGGAGGGCGTCACA+AGG | 0.566101 | 4.4:-8917082 | MS.gene28409:CDS |
| GAAAGATGTTGCTATGAGAT+GGG | 0.567305 | 4.4:-8916854 | MS.gene28409:CDS |
| CTGGTAAGGCTGTGATTCAG+TGG | 0.573589 | 4.4:+8917578 | None:intergenic |
| CCGGACTGATACAGGAACTT+CGG | 0.574834 | 4.4:+8917612 | None:intergenic |
| TGTAGTAGCTCCAGCGCCGG+TGG | 0.575392 | 4.4:-8917265 | MS.gene28409:CDS |
| CACCGGGGAAACCAGGACGG+TGG | 0.578167 | 4.4:-8917119 | MS.gene28409:CDS |
| TTCCTGATCGGGGAAATTGA+CGG | 0.583685 | 4.4:+8917368 | None:intergenic |
| GCGATAGCGGAGGCATTCGG+AGG | 0.585439 | 4.4:-8917093 | MS.gene28409:CDS |
| GGAAATTGACGGCATGACCA+CGG | 0.588936 | 4.4:+8917379 | None:intergenic |
| ATTGTCGGCGGCGACAGTGG+AGG | 0.590818 | 4.4:-8917202 | MS.gene28409:CDS |
| GTATCAGTCCGGTGCACCCG+CGG | 0.599158 | 4.4:-8917601 | MS.gene28409:CDS |
| GCGTCACAAGGTGGAAAGCG+TGG | 0.605173 | 4.4:-8917070 | MS.gene28409:CDS |
| GTAATGGAGATTGGAGCGAA+AGG | 0.608208 | 4.4:+8917423 | None:intergenic |
| ACAGCGATGAACGATTTCGT+TGG | 0.617295 | 4.4:+8917552 | None:intergenic |
| TGAGATTCTGAAGAAACAGA+TGG | 0.629866 | 4.4:-8917151 | MS.gene28409:CDS |
| CGGTTGAGGTTTCCTGATCG+GGG | 0.631525 | 4.4:+8917358 | None:intergenic |
| ATCCACCGGGGAAACCAGGA+CGG | 0.634948 | 4.4:-8917122 | MS.gene28409:CDS |
| AAGTGTTTGGAGTTCAAACG+AGG | 0.645478 | 4.4:-8916911 | MS.gene28409:CDS |
| AGAAGGAGGAGATTTAGCGA+CGG | 0.648578 | 4.4:-8916947 | MS.gene28409:CDS |
| CGGCGCTGGAGCTACTACAG+AGG | 0.650195 | 4.4:+8917269 | None:intergenic |
| CGATAGCGGAGGCATTCGGA+GGG | 0.653736 | 4.4:-8917092 | MS.gene28409:CDS |
| GCTCCAATCTCCATTACCGG+CGG | 0.663325 | 4.4:-8917417 | MS.gene28409:CDS |
| ACGGTGGGAGGCGATAGCGG+AGG | 0.665574 | 4.4:-8917103 | MS.gene28409:CDS |
| AAGCGTGGTGAAGAAATCAA+AGG | 0.666488 | 4.4:-8917055 | MS.gene28409:CDS |
| TCAGGAAACCTCAACCGATG+AGG | 0.671357 | 4.4:-8917352 | MS.gene28409:CDS |
| AGATTGGAGCGAAAGGACCA+AGG | 0.675323 | 4.4:+8917430 | None:intergenic |
| ATTCGGAGGGCGTCACAAGG+TGG | 0.679939 | 4.4:-8917079 | MS.gene28409:CDS |
| AAACGGTGTTGCATTGTCGG+CGG | 0.686073 | 4.4:-8917214 | MS.gene28409:CDS |
| CAGATGAAAATCGATTTGAG+CGG | 0.706129 | 4.4:+8917471 | None:intergenic |
| TTGGAGCGAAAGGACCAAGG+AGG | 0.738797 | 4.4:+8917433 | None:intergenic |
| GGAGAAGGAATGGAACGACG+AGG | 0.745135 | 4.4:-8917178 | MS.gene28409:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| AATCGAAATGGAAATGGAAA+CGG | - | chr4.4:8917155-8917174 | MS.gene28409:CDS | 30.0% | |
| AGAATTGCAGAATTGAAGAA+AGG | - | chr4.4:8917605-8917624 | MS.gene28409:CDS | 30.0% | |
| GAAGATTGAAGAGATTGAAA+CGG | + | chr4.4:8916862-8916881 | None:intergenic | 30.0% | |
| GAATTGCAGAATTGAAGAAA+GGG | - | chr4.4:8917606-8917625 | MS.gene28409:CDS | 30.0% | |
| TTGAAGAATCGAAATGGAAA+TGG | - | chr4.4:8917149-8917168 | MS.gene28409:CDS | 30.0% | |
| CAGAATTGAAGAAAGGGTTT+CGG | - | chr4.4:8917612-8917631 | MS.gene28409:CDS | 35.0% | |
| CATCTCATAGCAACATCTTT+CGG | + | chr4.4:8917533-8917552 | None:intergenic | 35.0% | |
| GAAAGATGTTGCTATGAGAT+GGG | - | chr4.4:8917532-8917551 | MS.gene28409:CDS | 35.0% | |
| GTGAAGAAATCAAAGGAGTT+GGG | - | chr4.4:8917338-8917357 | MS.gene28409:CDS | 35.0% | |
| GTTTCGTTGAAGAATCGAAA+TGG | - | chr4.4:8917143-8917162 | MS.gene28409:CDS | 35.0% | |
| ! | TGAGATTCTGAAGAAACAGA+TGG | - | chr4.4:8917235-8917254 | MS.gene28409:CDS | 35.0% |
| !! | AGAGAAGAAGGTTGATGATT+CGG | - | chr4.4:8917361-8917380 | MS.gene28409:CDS | 35.0% |
| !! | CAGATGAAAATCGATTTGAG+CGG | + | chr4.4:8916918-8916937 | None:intergenic | 35.0% |
| !! | GATAAGAGACTTGTTGAAGA+AGG | - | chr4.4:8917422-8917441 | MS.gene28409:CDS | 35.0% |
| !! | GTGAGAAAGTTGAAAGTGTT+TGG | - | chr4.4:8917462-8917481 | MS.gene28409:CDS | 35.0% |
| AAGCGTGGTGAAGAAATCAA+AGG | - | chr4.4:8917331-8917350 | MS.gene28409:CDS | 40.0% | |
| ACAGATGGTGAAAAATCCAC+CGG | - | chr4.4:8917250-8917269 | MS.gene28409:CDS | 40.0% | |
| CGAAAGATGTTGCTATGAGA+TGG | - | chr4.4:8917531-8917550 | MS.gene28409:CDS | 40.0% | |
| GGTGAAGAAATCAAAGGAGT+TGG | - | chr4.4:8917337-8917356 | MS.gene28409:CDS | 40.0% | |
| TTTCCTGGAATCATCCTCAT+CGG | + | chr4.4:8917051-8917070 | None:intergenic | 40.0% | |
| ! | AAGTGTTTGGAGTTCAAACG+AGG | - | chr4.4:8917475-8917494 | MS.gene28409:CDS | 40.0% |
| ! | TCTGAAGAAGAGAAAAGCGT+TGG | - | chr4.4:8917400-8917419 | MS.gene28409:CDS | 40.0% |
| !! | AAGAGACTTGTTGAAGAAGG+AGG | - | chr4.4:8917425-8917444 | MS.gene28409:CDS | 40.0% |
| !! | CGCTCAAATCGATTTTCATC+TGG | - | chr4.4:8916916-8916935 | MS.gene28409:CDS | 40.0% |
| !! | GATTTCGTTGGTTTCTGGTA+AGG | + | chr4.4:8916825-8916844 | None:intergenic | 40.0% |
| !! | TGAACGATTTCGTTGGTTTC+TGG | + | chr4.4:8916830-8916849 | None:intergenic | 40.0% |
| AAAGGAGTTGGGAGAGAAGA+AGG | - | chr4.4:8917349-8917368 | MS.gene28409:CDS | 45.0% | |
| ACAGCGATGAACGATTTCGT+TGG | + | chr4.4:8916837-8916856 | None:intergenic | 45.0% | |
| AGAAGGAGGAGATTTAGCGA+CGG | - | chr4.4:8917439-8917458 | MS.gene28409:CDS | 45.0% | |
| AGATGGTGAAAAATCCACCG+GGG | - | chr4.4:8917252-8917271 | MS.gene28409:CDS | 45.0% | |
| ATCGGTTGAGGTTTCCTGAT+CGG | + | chr4.4:8917033-8917052 | None:intergenic | 45.0% | |
| CAGATGGTGAAAAATCCACC+GGG | - | chr4.4:8917251-8917270 | MS.gene28409:CDS | 45.0% | |
| CGATTCTTCAACGAAACCAC+CGG | + | chr4.4:8917140-8917159 | None:intergenic | 45.0% | |
| TTCCTGATCGGGGAAATTGA+CGG | + | chr4.4:8917021-8917040 | None:intergenic | 45.0% | |
| TTCGCTCCAATCTCCATTAC+CGG | - | chr4.4:8916966-8916985 | MS.gene28409:CDS | 45.0% | |
| TTTGCATTCTCTCTCCTCCT+TGG | - | chr4.4:8916939-8916958 | MS.gene28409:CDS | 45.0% | |
| ! | GTAATGGAGATTGGAGCGAA+AGG | + | chr4.4:8916966-8916985 | None:intergenic | 45.0% |
| ! | TCGATTTGAGCGGTTCAGAT+TGG | + | chr4.4:8916908-8916927 | None:intergenic | 45.0% |
| !! | TGGAAACGGTGTTGCATTGT+CGG | - | chr4.4:8917169-8917188 | MS.gene28409:CDS | 45.0% |
| AAAAATCCACCGGGGAAACC+AGG | - | chr4.4:8917260-8917279 | MS.gene28409:CDS | 50.0% | |
| AAAGTTGCTGCTGCTGTTCC+TGG | - | chr4.4:8917557-8917576 | MS.gene28409:CDS | 50.0% | |
| AAGTTGCTGCTGCTGTTCCT+GGG | - | chr4.4:8917558-8917577 | MS.gene28409:CDS | 50.0% | |
| AGATTGGAGCGAAAGGACCA+AGG | + | chr4.4:8916959-8916978 | None:intergenic | 50.0% | |
| CAACCGATGAGGATGATTCC+AGG | - | chr4.4:8917045-8917064 | MS.gene28409:CDS | 50.0% | |
| CAGATCCAAGCAACGCAGAT+CGG | - | chr4.4:8917085-8917104 | MS.gene28409:CDS | 50.0% | |
| CCGAAGTTCCTGTATCAGTC+CGG | - | chr4.4:8916774-8916793 | MS.gene28409:CDS | 50.0% | |
| CCGGACTGATACAGGAACTT+CGG | + | chr4.4:8916777-8916796 | None:intergenic | 50.0% | |
| CTGGTAAGGCTGTGATTCAG+TGG | + | chr4.4:8916811-8916830 | None:intergenic | 50.0% | |
| GAAGGAGGAGATTTAGCGAC+GGG | - | chr4.4:8917440-8917459 | MS.gene28409:CDS | 50.0% | |
| GGAAATTGACGGCATGACCA+CGG | + | chr4.4:8917010-8917029 | None:intergenic | 50.0% | |
| GGGTTTCGGACTGCAAAATC+TGG | - | chr4.4:8917626-8917645 | MS.gene28409:CDS | 50.0% | |
| TCAGGAAACCTCAACCGATG+AGG | - | chr4.4:8917034-8917053 | MS.gene28409:CDS | 50.0% | |
| TCGGTTGAGGTTTCCTGATC+GGG | + | chr4.4:8917032-8917051 | None:intergenic | 50.0% | |
| ! | CAAGCTGCTTTCGATTTCCC+AGG | + | chr4.4:8917578-8917597 | None:intergenic | 50.0% |
| ! | GGAATCATCCTCATCGGTTG+AGG | + | chr4.4:8917045-8917064 | None:intergenic | 50.0% |
| !! | AAACGGTGTTGCATTGTCGG+CGG | - | chr4.4:8917172-8917191 | MS.gene28409:CDS | 50.0% |
| !!! | GCGCTGCTGAGATTTTTTCC+TGG | + | chr4.4:8917066-8917085 | None:intergenic | 50.0% |
| ATCGTCCGATCTGCGTTGCT+TGG | + | chr4.4:8917093-8917112 | None:intergenic | 55.0% | |
| CAGTGGAGGAGGAGAAGGAA+TGG | - | chr4.4:8917198-8917217 | MS.gene28409:CDS | 55.0% | |
| CGGTTGAGGTTTCCTGATCG+GGG | + | chr4.4:8917031-8917050 | None:intergenic | 55.0% | |
| GCTCCAATCTCCATTACCGG+CGG | - | chr4.4:8916969-8916988 | MS.gene28409:CDS | 55.0% | |
| GGAGAAGGAATGGAACGACG+AGG | - | chr4.4:8917208-8917227 | MS.gene28409:CDS | 55.0% | |
| TGCCGTCAATTTCCCCGATC+AGG | - | chr4.4:8917016-8917035 | MS.gene28409:CDS | 55.0% | |
| TTGGAGCGAAAGGACCAAGG+AGG | + | chr4.4:8916956-8916975 | None:intergenic | 55.0% | |
| AGGCTGTGATTCAGTGGCCG+CGG | + | chr4.4:8916805-8916824 | None:intergenic | 60.0% | |
| ATCCACCGGGGAAACCAGGA+CGG | - | chr4.4:8917264-8917283 | MS.gene28409:CDS | 60.0% | |
| CTCTGTAGTAGCTCCAGCGC+CGG | - | chr4.4:8917118-8917137 | MS.gene28409:CDS | 60.0% | |
| GCGTCACAAGGTGGAAAGCG+TGG | - | chr4.4:8917316-8917335 | MS.gene28409:CDS | 60.0% | |
| TTCAACGAAACCACCGGCGC+TGG | + | chr4.4:8917134-8917153 | None:intergenic | 60.0% | |
| !! | ATTCGGAGGGCGTCACAAGG+TGG | - | chr4.4:8917307-8917326 | MS.gene28409:CDS | 60.0% |
| !! | CGATAGCGGAGGCATTCGGA+GGG | - | chr4.4:8917294-8917313 | MS.gene28409:CDS | 60.0% |
| !! | GAGGCGATAGCGGAGGCATT+CGG | - | chr4.4:8917290-8917309 | MS.gene28409:CDS | 60.0% |
| !! | TCGCCGCCGGTAATGGAGAT+TGG | + | chr4.4:8916975-8916994 | None:intergenic | 60.0% |
| ACCGGGGAAACCAGGACGGT+GGG | - | chr4.4:8917268-8917287 | MS.gene28409:CDS | 65.0% | |
| ACGGGAATCGCCGCCGGTAA+TGG | + | chr4.4:8916982-8917001 | None:intergenic | 65.0% | |
| AGGACGGTGGGAGGCGATAG+CGG | - | chr4.4:8917280-8917299 | MS.gene28409:CDS | 65.0% | |
| ATTGTCGGCGGCGACAGTGG+AGG | - | chr4.4:8917184-8917203 | MS.gene28409:CDS | 65.0% | |
| CGGGTGCACCGGACTGATAC+AGG | + | chr4.4:8916785-8916804 | None:intergenic | 65.0% | |
| GGCGACAGTGGAGGAGGAGA+AGG | - | chr4.4:8917193-8917212 | MS.gene28409:CDS | 65.0% | |
| GGCTGTGATTCAGTGGCCGC+GGG | + | chr4.4:8916804-8916823 | None:intergenic | 65.0% | |
| GTATCAGTCCGGTGCACCCG+CGG | - | chr4.4:8916785-8916804 | MS.gene28409:CDS | 65.0% | |
| TCCCACCGTCCTGGTTTCCC+CGG | + | chr4.4:8917272-8917291 | None:intergenic | 65.0% | |
| TGCATTGTCGGCGGCGACAG+TGG | - | chr4.4:8917181-8917200 | MS.gene28409:CDS | 65.0% | |
| ! | CGGCGCTGGAGCTACTACAG+AGG | + | chr4.4:8917120-8917139 | None:intergenic | 65.0% |
| ! | TGTAGTAGCTCCAGCGCCGG+TGG | - | chr4.4:8917121-8917140 | MS.gene28409:CDS | 65.0% |
| !! | GCGATAGCGGAGGCATTCGG+AGG | - | chr4.4:8917293-8917312 | MS.gene28409:CDS | 65.0% |
| !! | GGCATTCGGAGGGCGTCACA+AGG | - | chr4.4:8917304-8917323 | MS.gene28409:CDS | 65.0% |
| ACCGGCGGCGATTCCCGTGT+CGG | - | chr4.4:8916984-8917003 | MS.gene28409:CDS | 70.0% | |
| CACCGGGGAAACCAGGACGG+TGG | - | chr4.4:8917267-8917286 | MS.gene28409:CDS | 70.0% | |
| CACCGTCCTGGTTTCCCCGG+TGG | + | chr4.4:8917269-8917288 | None:intergenic | 70.0% | |
| CGGCATGACCACGGCCGACA+CGG | + | chr4.4:8917001-8917020 | None:intergenic | 70.0% | |
| GCTATCGCCTCCCACCGTCC+TGG | + | chr4.4:8917281-8917300 | None:intergenic | 70.0% | |
| GGCATGACCACGGCCGACAC+GGG | + | chr4.4:8917000-8917019 | None:intergenic | 70.0% | |
| GGGGAAACCAGGACGGTGGG+AGG | - | chr4.4:8917271-8917290 | MS.gene28409:CDS | 70.0% | |
| TTCAGTGGCCGCGGGTGCAC+CGG | + | chr4.4:8916796-8916815 | None:intergenic | 70.0% | |
| ! | ACGGTGGGAGGCGATAGCGG+AGG | - | chr4.4:8917283-8917302 | MS.gene28409:CDS | 70.0% |
| GCCGACACGGGAATCGCCGC+CGG | + | chr4.4:8916988-8917007 | None:intergenic | 75.0% | |
| GTCGGCGGCGACAGTGGAGG+AGG | - | chr4.4:8917187-8917206 | MS.gene28409:CDS | 75.0% | |
| ! | GGCGATTCCCGTGTCGGCCG+TGG | - | chr4.4:8916990-8917009 | MS.gene28409:CDS | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.4 | gene | 8916747 | 8917661 | 8916747 | ID=MS.gene28409 |
| chr4.4 | mRNA | 8916747 | 8917661 | 8916747 | ID=MS.gene28409.t1;Parent=MS.gene28409 |
| chr4.4 | exon | 8916747 | 8917661 | 8916747 | ID=MS.gene28409.t1.exon1;Parent=MS.gene28409.t1 |
| chr4.4 | CDS | 8916747 | 8917661 | 8916747 | ID=cds.MS.gene28409.t1;Parent=MS.gene28409.t1 |
| Gene Sequence |
| Protein sequence |
