Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene28776.t1 | XP_013450381.1 | 98.2 | 883 | 16 | 0 | 1 | 883 | 1 | 883 | 0.00E+00 | 1715.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene28776.t1 | P0DKG8 | 68.4 | 887 | 272 | 7 | 1 | 883 | 1 | 883 | 0.0e+00 | 1191.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene28776.t1 | A0A072U3V9 | 98.2 | 883 | 16 | 0 | 1 | 883 | 1 | 883 | 0.0e+00 | 1715.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049137 | MS.gene28776 | 0.830165 | 3.42E-55 | -1.69E-46 |
| MS.gene049427 | MS.gene28776 | 0.80583 | 1.10E-49 | -1.69E-46 |
| MS.gene050426 | MS.gene28776 | -0.807073 | 6.04E-50 | -1.69E-46 |
| MS.gene050507 | MS.gene28776 | 0.818011 | 2.45E-52 | -1.69E-46 |
| MS.gene050529 | MS.gene28776 | 0.812161 | 4.87E-51 | -1.69E-46 |
| MS.gene050670 | MS.gene28776 | 0.803534 | 3.33E-49 | -1.69E-46 |
| MS.gene050812 | MS.gene28776 | 0.86051 | 1.96E-63 | -1.69E-46 |
| MS.gene05081 | MS.gene28776 | 0.840086 | 1.07E-57 | -1.69E-46 |
| MS.gene051171 | MS.gene28776 | 0.849045 | 4.16E-60 | -1.69E-46 |
| MS.gene051208 | MS.gene28776 | 0.80931 | 2.02E-50 | -1.69E-46 |
| MS.gene051242 | MS.gene28776 | 0.847452 | 1.15E-59 | -1.69E-46 |
| MS.gene051244 | MS.gene28776 | 0.861327 | 1.11E-63 | -1.69E-46 |
| MS.gene051525 | MS.gene28776 | 0.803756 | 2.99E-49 | -1.69E-46 |
| MS.gene051582 | MS.gene28776 | 0.823354 | 1.45E-53 | -1.69E-46 |
| MS.gene051666 | MS.gene28776 | 0.805463 | 1.32E-49 | -1.69E-46 |
| MS.gene051838 | MS.gene28776 | 0.820175 | 7.88E-53 | -1.69E-46 |
| MS.gene052134 | MS.gene28776 | 0.830311 | 3.15E-55 | -1.69E-46 |
| MS.gene052135 | MS.gene28776 | 0.816293 | 5.96E-52 | -1.69E-46 |
| MS.gene052310 | MS.gene28776 | 0.807252 | 5.53E-50 | -1.69E-46 |
| MS.gene052340 | MS.gene28776 | 0.803699 | 3.08E-49 | -1.69E-46 |
| MS.gene052469 | MS.gene28776 | 0.806231 | 9.09E-50 | -1.69E-46 |
| MS.gene052481 | MS.gene28776 | 0.838182 | 3.35E-57 | -1.69E-46 |
| MS.gene052484 | MS.gene28776 | 0.807517 | 4.86E-50 | -1.69E-46 |
| MS.gene052501 | MS.gene28776 | 0.815587 | 8.56E-52 | -1.69E-46 |
| MS.gene052505 | MS.gene28776 | 0.832556 | 8.83E-56 | -1.69E-46 |
| MS.gene053107 | MS.gene28776 | 0.808913 | 2.45E-50 | -1.69E-46 |
| MS.gene053330 | MS.gene28776 | 0.873633 | 1.26E-67 | -1.69E-46 |
| MS.gene053579 | MS.gene28776 | 0.806694 | 7.27E-50 | -1.69E-46 |
| MS.gene053971 | MS.gene28776 | 0.827412 | 1.59E-54 | -1.69E-46 |
| MS.gene054102 | MS.gene28776 | 0.810318 | 1.22E-50 | -1.69E-46 |
| MS.gene054110 | MS.gene28776 | 0.804179 | 2.45E-49 | -1.69E-46 |
| MS.gene054719 | MS.gene28776 | 0.813385 | 2.63E-51 | -1.69E-46 |
| MS.gene054884 | MS.gene28776 | -0.84632 | 2.34E-59 | -1.69E-46 |
| MS.gene055206 | MS.gene28776 | 0.833863 | 4.18E-56 | -1.69E-46 |
| MS.gene055370 | MS.gene28776 | 0.904518 | 1.13E-79 | -1.69E-46 |
| MS.gene055539 | MS.gene28776 | 0.835303 | 1.81E-56 | -1.69E-46 |
| MS.gene05553 | MS.gene28776 | 0.830248 | 3.27E-55 | -1.69E-46 |
| MS.gene056305 | MS.gene28776 | 0.803715 | 3.05E-49 | -1.69E-46 |
| MS.gene056351 | MS.gene28776 | 0.815201 | 1.04E-51 | -1.69E-46 |
| MS.gene056633 | MS.gene28776 | 0.893017 | 9.30E-75 | -1.69E-46 |
| MS.gene056664 | MS.gene28776 | 0.880729 | 4.32E-70 | -1.69E-46 |
| MS.gene056796 | MS.gene28776 | 0.844354 | 7.96E-59 | -1.69E-46 |
| MS.gene056877 | MS.gene28776 | 0.803508 | 3.37E-49 | -1.69E-46 |
| MS.gene057048 | MS.gene28776 | 0.803416 | 3.52E-49 | -1.69E-46 |
| MS.gene057124 | MS.gene28776 | 0.803246 | 3.82E-49 | -1.69E-46 |
| MS.gene057196 | MS.gene28776 | 0.872669 | 2.66E-67 | -1.69E-46 |
| MS.gene057332 | MS.gene28776 | 0.856922 | 2.32E-62 | -1.69E-46 |
| MS.gene057658 | MS.gene28776 | 0.843129 | 1.69E-58 | -1.69E-46 |
| MS.gene058233 | MS.gene28776 | 0.863811 | 1.91E-64 | -1.69E-46 |
| MS.gene058276 | MS.gene28776 | 0.835915 | 1.27E-56 | -1.69E-46 |
| MS.gene058376 | MS.gene28776 | 0.804113 | 2.52E-49 | -1.69E-46 |
| MS.gene058444 | MS.gene28776 | 0.814974 | 1.17E-51 | -1.69E-46 |
| MS.gene058743 | MS.gene28776 | 0.810158 | 1.32E-50 | -1.69E-46 |
| MS.gene058746 | MS.gene28776 | 0.896675 | 2.94E-76 | -1.69E-46 |
| MS.gene058838 | MS.gene28776 | 0.827075 | 1.91E-54 | -1.69E-46 |
| MS.gene059141 | MS.gene28776 | 0.802482 | 5.49E-49 | -1.69E-46 |
| MS.gene05914 | MS.gene28776 | 0.860772 | 1.64E-63 | -1.69E-46 |
| MS.gene05934 | MS.gene28776 | 0.806754 | 7.05E-50 | -1.69E-46 |
| MS.gene059512 | MS.gene28776 | 0.854053 | 1.59E-61 | -1.69E-46 |
| MS.gene059869 | MS.gene28776 | -0.806248 | 9.02E-50 | -1.69E-46 |
| MS.gene060407 | MS.gene28776 | 0.872912 | 2.21E-67 | -1.69E-46 |
| MS.gene06092 | MS.gene28776 | 0.807294 | 5.42E-50 | -1.69E-46 |
| MS.gene061231 | MS.gene28776 | 0.83434 | 3.17E-56 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene28776 | MS.gene007306 | PPI |
| MS.gene28776 | MS.gene020558 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene28776.t1 | MTR_7g108940 | 98.301 | 883 | 15 | 0 | 1 | 883 | 1 | 883 | 0.0 | 1815 |
| MS.gene28776.t1 | MTR_7g108940 | 97.778 | 810 | 18 | 0 | 1 | 810 | 1 | 810 | 0.0 | 1652 |
| MS.gene28776.t1 | MTR_8g020880 | 38.810 | 353 | 189 | 8 | 146 | 497 | 221 | 547 | 8.74e-62 | 222 |
| MS.gene28776.t1 | MTR_8g020880 | 38.810 | 353 | 189 | 8 | 146 | 497 | 221 | 547 | 2.25e-61 | 222 |
| MS.gene28776.t1 | MTR_4g123930 | 30.091 | 329 | 200 | 7 | 175 | 492 | 120 | 429 | 1.86e-38 | 150 |
| MS.gene28776.t1 | MTR_4g123930 | 30.395 | 329 | 199 | 7 | 175 | 492 | 120 | 429 | 1.92e-37 | 149 |
| MS.gene28776.t1 | MTR_4g123930 | 30.189 | 318 | 192 | 7 | 186 | 492 | 1 | 299 | 7.70e-37 | 142 |
| MS.gene28776.t1 | MTR_4g123930 | 30.189 | 318 | 192 | 7 | 186 | 492 | 1 | 299 | 1.46e-35 | 141 |
| MS.gene28776.t1 | MTR_5g007870 | 37.054 | 224 | 129 | 5 | 126 | 339 | 108 | 329 | 2.66e-34 | 142 |
| MS.gene28776.t1 | MTR_5g007870 | 36.364 | 121 | 71 | 2 | 377 | 497 | 451 | 565 | 2.02e-15 | 81.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene28776.t1 | AT4G02260 | 68.806 | 888 | 267 | 8 | 1 | 883 | 1 | 883 | 0.0 | 1243 |
| MS.gene28776.t1 | AT4G02260 | 68.729 | 889 | 267 | 9 | 1 | 883 | 1 | 884 | 0.0 | 1238 |
| MS.gene28776.t1 | AT4G02260 | 67.793 | 888 | 261 | 9 | 1 | 883 | 1 | 868 | 0.0 | 1212 |
| MS.gene28776.t1 | AT4G02260 | 69.212 | 812 | 240 | 8 | 1 | 807 | 1 | 807 | 0.0 | 1135 |
| MS.gene28776.t1 | AT1G54130 | 37.853 | 354 | 195 | 7 | 144 | 497 | 211 | 539 | 3.01e-62 | 224 |
| MS.gene28776.t1 | AT3G14050 | 39.045 | 356 | 184 | 9 | 146 | 497 | 209 | 535 | 3.89e-62 | 224 |
| MS.gene28776.t1 | AT3G17470 | 31.288 | 326 | 198 | 11 | 180 | 495 | 122 | 431 | 1.32e-36 | 144 |
| MS.gene28776.t1 | AT3G17470 | 30.532 | 357 | 213 | 13 | 180 | 526 | 122 | 453 | 1.64e-36 | 146 |
| MS.gene28776.t1 | AT3G17470 | 29.504 | 383 | 234 | 14 | 180 | 551 | 137 | 494 | 1.74e-36 | 146 |
Find 196 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGCAGGACTTCTTTATATTT+TGG | 0.117821 | 7.4:+6249732 | None:intergenic |
| TGAAGGAAATTTAGAAAATT+TGG | 0.135903 | 7.4:-6249096 | MS.gene28776:intron |
| GGACCTTCGGCAAATGTTTC+TGG | 0.140517 | 7.4:-6255028 | MS.gene28776:CDS |
| GCAGATTTGCTATCATGTTC+TGG | 0.190657 | 7.4:-6252352 | MS.gene28776:intron |
| CAAAGCAAACCTGTGCAATT+TGG | 0.221140 | 7.4:+6252626 | None:intergenic |
| CACTGTTACAAGAGATCTTC+TGG | 0.241677 | 7.4:-6251524 | MS.gene28776:CDS |
| GAGAGGATAGAGGAGGAATT+TGG | 0.243763 | 7.4:-6255272 | MS.gene28776:CDS |
| TGGACTAACTCCAGTTCTTT+AGG | 0.245830 | 7.4:+6255694 | None:intergenic |
| AGATCAAATACCGGGTGTTT+TGG | 0.268009 | 7.4:-6248950 | MS.gene28776:CDS |
| CCAGTAGCTCCAAACATAAA+AGG | 0.272058 | 7.4:-6249953 | MS.gene28776:CDS |
| TATATGATACACACTGAAAT+TGG | 0.278187 | 7.4:-6251288 | MS.gene28776:CDS |
| TTCACCTTTGCATAATCTTC+AGG | 0.279113 | 7.4:+6253191 | None:intergenic |
| GCTTGGGATGTATCAAATTA+AGG | 0.281559 | 7.4:-6253450 | MS.gene28776:intron |
| CTCCTTTGGCAAAGTTGCTT+GGG | 0.299059 | 7.4:-6253466 | MS.gene28776:CDS |
| CTGTGTGTAAAGAGCCTTAC+AGG | 0.317355 | 7.4:-6252877 | MS.gene28776:intron |
| GTTGAGGTTGCACGGATTCT+TGG | 0.319585 | 7.4:-6255477 | MS.gene28776:CDS |
| CTTTCTCATGTTCTTTGAAT+AGG | 0.319692 | 7.4:+6253153 | None:intergenic |
| CAGATTTGCTATCATGTTCT+GGG | 0.322566 | 7.4:-6252351 | MS.gene28776:CDS |
| TACATACAGATCTAGGAATA+GGG | 0.332916 | 7.4:+6252307 | None:intergenic |
| ATTACAGGTATTTGCTCCTT+TGG | 0.341930 | 7.4:-6253480 | MS.gene28776:CDS |
| GCTCCTTTGGCAAAGTTGCT+TGG | 0.345703 | 7.4:-6253467 | MS.gene28776:CDS |
| ATACATACAGATCTAGGAAT+AGG | 0.350804 | 7.4:+6252306 | None:intergenic |
| GCCTCGTGGCACAATATAGA+AGG | 0.351249 | 7.4:-6249678 | MS.gene28776:CDS |
| AGTGGGAGAGAATTCGTTAC+TGG | 0.356793 | 7.4:-6251860 | MS.gene28776:CDS |
| AGCTTACCGTAAAAGCATTA+TGG | 0.356855 | 7.4:+6255674 | None:intergenic |
| CATTTGTCCAGGAACTTGAT+TGG | 0.368685 | 7.4:-6255355 | MS.gene28776:intron |
| CAAAGCCGTGCGTTGGGGTT+GGG | 0.369858 | 7.4:-6252492 | MS.gene28776:CDS |
| TGTACCTCCCACAAACTTCC+AGG | 0.375552 | 7.4:+6255866 | None:intergenic |
| ATTGCAACCCCTAAACCTAA+TGG | 0.376245 | 7.4:-6252158 | MS.gene28776:CDS |
| ATTGTTAACTTGAATCATAT+TGG | 0.380037 | 7.4:+6249755 | None:intergenic |
| CATTGCAATGGAGACATTAC+AGG | 0.381847 | 7.4:-6253495 | MS.gene28776:CDS |
| TTAAACCAAAGCCGTGCGTT+GGG | 0.385297 | 7.4:-6252498 | MS.gene28776:CDS |
| TGGGGTTGATCCATGGAATC+TGG | 0.390644 | 7.4:-6252332 | MS.gene28776:CDS |
| GGTCTAAGAATTGATCATCT+TGG | 0.398616 | 7.4:+6252927 | None:intergenic |
| ACACTTCACGAGGGATTCTC+TGG | 0.400032 | 7.4:-6255974 | MS.gene28776:CDS |
| TATGTTCAGGCTTGAAATAC+AGG | 0.403830 | 7.4:-6252090 | MS.gene28776:intron |
| GTAGATTAGAACAGAAGAAA+TGG | 0.405177 | 7.4:-6251918 | MS.gene28776:intron |
| CCAACCCCAACGCACGGCTT+TGG | 0.406391 | 7.4:+6252493 | None:intergenic |
| ATGGCAGTTGTCTTGTTCTT+CGG | 0.412219 | 7.4:-6255921 | MS.gene28776:CDS |
| CATGAGCTCTAGGGAATTTG+TGG | 0.417115 | 7.4:-6251548 | MS.gene28776:CDS |
| AAATCTCCTAGGGTTCTTAC+CGG | 0.417218 | 7.4:-6256525 | MS.gene28776:CDS |
| ACATATGCCTCCACATAAAC+AGG | 0.418695 | 7.4:-6254818 | MS.gene28776:intron |
| TCTAATTTCATCAGGACCTT+AGG | 0.420541 | 7.4:-6255738 | MS.gene28776:intron |
| GTGTGAATGTATGCAATTCT+TGG | 0.422183 | 7.4:-6256599 | MS.gene28776:CDS |
| ACCAGCTGTGGACTGCATAA+AGG | 0.423090 | 7.4:+6252469 | None:intergenic |
| AACGACCAGGCTGAGGTTGA+TGG | 0.426492 | 7.4:-6249152 | MS.gene28776:intron |
| GGCATTGCAGCTCACTATAG+TGG | 0.428991 | 7.4:-6251878 | MS.gene28776:CDS |
| ATTTGTCCAGGAACTTGATT+GGG | 0.429628 | 7.4:-6255354 | MS.gene28776:intron |
| TGTGACGCCAAGTGCTTTGT+CGG | 0.430385 | 7.4:+6255994 | None:intergenic |
| CTAGATTTGCATCTAGAGAA+TGG | 0.434783 | 7.4:-6255940 | MS.gene28776:CDS |
| CAGTAGCTCCAAACATAAAA+GGG | 0.435513 | 7.4:-6249952 | MS.gene28776:CDS |
| GTATCTTCCTCCTAAAGAAC+TGG | 0.435659 | 7.4:-6255704 | MS.gene28776:CDS |
| AGAATCCGTGCAACCTCAAC+CGG | 0.436241 | 7.4:+6255480 | None:intergenic |
| TCCCAACTAGGTGTCAAAGC+TGG | 0.436553 | 7.4:-6255103 | MS.gene28776:intron |
| AACAATTATTTCAGGCATGA+TGG | 0.437402 | 7.4:-6249342 | MS.gene28776:intron |
| GATTGGGAGTCAATTGCTGC+TGG | 0.437948 | 7.4:-6255338 | MS.gene28776:CDS |
| TTGCAACCCCTAAACCTAAT+GGG | 0.442273 | 7.4:-6252157 | MS.gene28776:CDS |
| GCTTCTGCACCTTTCATGTC+AGG | 0.448291 | 7.4:-6256910 | MS.gene28776:intron |
| TCCTGCCAGGTTTAGAAAGT+TGG | 0.448380 | 7.4:-6249716 | MS.gene28776:CDS |
| AACAAAATACATACAGATCT+AGG | 0.449095 | 7.4:+6252300 | None:intergenic |
| GCCTTTATGCAGTCCACAGC+TGG | 0.449575 | 7.4:-6252470 | MS.gene28776:intron |
| CCAAAGCCGTGCGTTGGGGT+TGG | 0.452445 | 7.4:-6252493 | MS.gene28776:CDS |
| GAGAGAATTCGTTACTGGCT+TGG | 0.454991 | 7.4:-6251855 | MS.gene28776:CDS |
| CTTCATCATTCATCCGGTTG+AGG | 0.455435 | 7.4:-6255493 | MS.gene28776:CDS |
| GTTATGTTATTTCAAGTTGA+AGG | 0.457526 | 7.4:-6249113 | MS.gene28776:CDS |
| GCTGAGGTTGATGGCGGAAG+GGG | 0.457562 | 7.4:-6249143 | MS.gene28776:CDS |
| ATGTAAATTTGAAGGGCAAA+GGG | 0.462707 | 7.4:-6249806 | MS.gene28776:CDS |
| ATGGAAATTACCTGTTTATG+TGG | 0.465464 | 7.4:+6254808 | None:intergenic |
| TCTTGGAGAGGGGATGGAAA+TGG | 0.467748 | 7.4:-6256582 | MS.gene28776:CDS |
| CCCAACTAGGTGTCAAAGCT+GGG | 0.468219 | 7.4:-6255102 | MS.gene28776:intron |
| ATGTGAAAGCAGAGGACCTT+CGG | 0.473982 | 7.4:-6255041 | MS.gene28776:CDS |
| AGGCTGAGGTTGATGGCGGA+AGG | 0.474494 | 7.4:-6249145 | MS.gene28776:CDS |
| AGACCTTATGACAGTTAAAA+CGG | 0.479370 | 7.4:-6252909 | MS.gene28776:CDS |
| CATGTGCGTCGAAATCTCCT+AGG | 0.479666 | 7.4:-6256536 | MS.gene28776:CDS |
| ATCCACTGTTACCTCTCCAC+TGG | 0.480367 | 7.4:+6251477 | None:intergenic |
| CGTGCATCATGTAAATTTGA+AGG | 0.483447 | 7.4:-6249814 | MS.gene28776:CDS |
| TTGTTGGCAACATGAGCTCT+AGG | 0.486743 | 7.4:-6251558 | MS.gene28776:CDS |
| ACTGTCCTTCAGAGTAAGAA+TGG | 0.489568 | 7.4:-6249879 | MS.gene28776:CDS |
| GATCAGGAAGCTTACCTCTT+CGG | 0.489957 | 7.4:+6249619 | None:intergenic |
| CTCTAGAGTAGATCAAATAC+CGG | 0.491186 | 7.4:-6248959 | MS.gene28776:CDS |
| CAAAGGGGACATGATGCTGC+AGG | 0.497067 | 7.4:-6249790 | MS.gene28776:CDS |
| GCTTGGACACCCAAGGTCAA+TGG | 0.497685 | 7.4:-6249852 | MS.gene28776:CDS |
| GGCTGAGGTTGATGGCGGAA+GGG | 0.499777 | 7.4:-6249144 | MS.gene28776:CDS |
| GAATTCGTTACTGGCTTGGT+TGG | 0.500544 | 7.4:-6251851 | MS.gene28776:CDS |
| CATGTTCTGGGGTTGATCCA+TGG | 0.504046 | 7.4:-6252339 | MS.gene28776:CDS |
| CTTGAATCATATTGGCGACA+TGG | 0.505746 | 7.4:+6249763 | None:intergenic |
| ACTTTCTCAGTGATTCTGAC+GGG | 0.507221 | 7.4:-6250007 | MS.gene28776:CDS |
| CTCAACCGGATGAATGATGA+AGG | 0.509670 | 7.4:+6255494 | None:intergenic |
| CGAACCCTTCATCATTCATC+CGG | 0.509821 | 7.4:-6255499 | MS.gene28776:CDS |
| GAGTGGCAAGAAGAGTTTGT+TGG | 0.510210 | 7.4:-6251574 | MS.gene28776:CDS |
| AGAGTAAGAATGGAAGTGCT+TGG | 0.510899 | 7.4:-6249869 | MS.gene28776:CDS |
| GGTTGATGGCGGAAGGGGAA+TGG | 0.511538 | 7.4:-6249138 | MS.gene28776:CDS |
| TACCGGCTTTCTTGCGAGCA+CGG | 0.511790 | 7.4:-6256508 | MS.gene28776:CDS |
| TTCATCCGGTTGAGGTTGCA+CGG | 0.513436 | 7.4:-6255485 | MS.gene28776:CDS |
| GGCTGAGGTCGCTACAGCAT+TGG | 0.515456 | 7.4:-6249321 | MS.gene28776:CDS |
| TTATCGTCAAATTAGCAGAC+AGG | 0.517261 | 7.4:-6254864 | MS.gene28776:CDS |
| ATTAAACCAAAGCCGTGCGT+TGG | 0.519871 | 7.4:-6252499 | MS.gene28776:CDS |
| TGCAATTCTTGGAGAGGGGA+TGG | 0.519916 | 7.4:-6256588 | MS.gene28776:CDS |
| TGAGATTAACCAAATTGCAC+AGG | 0.524101 | 7.4:-6252635 | MS.gene28776:intron |
| TCATATTCCGACAAAGCACT+TGG | 0.525417 | 7.4:-6256001 | MS.gene28776:CDS |
| AAATATAAAGAAGTCCTGCC+AGG | 0.526449 | 7.4:-6249729 | MS.gene28776:CDS |
| GATGGTCTACTGGCTGTAGT+TGG | 0.526752 | 7.4:-6248927 | MS.gene28776:CDS |
| CATTGTGGAAGGAGAGACTA+AGG | 0.527478 | 7.4:-6255234 | MS.gene28776:intron |
| GCATTTGCAAGCACTCGTGC+AGG | 0.528305 | 7.4:+6251113 | None:intergenic |
| CTGTAGTTGGCCAAGCCTGA+TGG | 0.529497 | 7.4:-6248914 | MS.gene28776:CDS |
| CAACAAGATGGTAGCTGCAA+AGG | 0.530841 | 7.4:-6251265 | MS.gene28776:intron |
| GTTTCGTGGATTAACCTGTA+AGG | 0.534166 | 7.4:+6252863 | None:intergenic |
| CATGTAAATTTGAAGGGCAA+AGG | 0.535165 | 7.4:-6249807 | MS.gene28776:CDS |
| CTCATGTTCTTTGAATAGGT+CGG | 0.536108 | 7.4:+6253157 | None:intergenic |
| GAATAGGGGTCCAGATTCCA+TGG | 0.537999 | 7.4:+6252322 | None:intergenic |
| TGCATACAACAGATAACCAT+TGG | 0.538972 | 7.4:+6249646 | None:intergenic |
| GCCAACTTTCTAAACCTGGC+AGG | 0.545096 | 7.4:+6249715 | None:intergenic |
| TGCAAGACACAAAATAATGA+AGG | 0.547606 | 7.4:-6250205 | MS.gene28776:intron |
| GCTTGCCAACTTTCTAAACC+TGG | 0.549616 | 7.4:+6249711 | None:intergenic |
| AGCCGTGCTCGCAAGAAAGC+CGG | 0.550935 | 7.4:+6256506 | None:intergenic |
| TTTGTACCCATTAGGTTTAG+GGG | 0.551930 | 7.4:+6252151 | None:intergenic |
| TATTTCAGGCATGATGGCTG+AGG | 0.552186 | 7.4:-6249336 | MS.gene28776:intron |
| AGAAAGCCGGTAAGAACCCT+AGG | 0.552414 | 7.4:+6256519 | None:intergenic |
| GATACGAGATCACGGGCCTA+AGG | 0.552517 | 7.4:+6255722 | None:intergenic |
| ACTGTTACAAGAGATCTTCT+GGG | 0.552683 | 7.4:-6251523 | MS.gene28776:CDS |
| CACTTCCATTCTTACTCTGA+AGG | 0.552893 | 7.4:+6249874 | None:intergenic |
| TACAACAGATAACCATTGGA+TGG | 0.554913 | 7.4:+6249650 | None:intergenic |
| GCGTACTCTGAGTGCAATGT+TGG | 0.561487 | 7.4:+6251772 | None:intergenic |
| CACTGAAATTGGCAACAAGA+TGG | 0.562829 | 7.4:-6251277 | MS.gene28776:CDS |
| ACTTCCAGGGGAAAACTCGC+TGG | 0.564635 | 7.4:+6255880 | None:intergenic |
| AATGGATTTGATAGCTGAGA+GGG | 0.567318 | 7.4:-6251900 | MS.gene28776:CDS |
| GGGTAAGTGGTTACCAGCTG+TGG | 0.569013 | 7.4:+6252457 | None:intergenic |
| GACTTTCTCAGTGATTCTGA+CGG | 0.576627 | 7.4:-6250008 | MS.gene28776:CDS |
| TGCTGGATTACTTCATGACA+CGG | 0.579642 | 7.4:-6255321 | MS.gene28776:CDS |
| GAAATTACCTGTTTATGTGG+AGG | 0.581208 | 7.4:+6254811 | None:intergenic |
| TAAACCAAAGCCGTGCGTTG+GGG | 0.582851 | 7.4:-6252497 | MS.gene28776:CDS |
| ATGTATGCAATTCTTGGAGA+GGG | 0.584331 | 7.4:-6256593 | MS.gene28776:CDS |
| TGTTGGCAACATGAGCTCTA+GGG | 0.586013 | 7.4:-6251557 | MS.gene28776:CDS |
| GTCTTTGTATTTACACCCAG+TGG | 0.587156 | 7.4:-6251493 | MS.gene28776:CDS |
| ACTCACCACACAAGAACATA+CGG | 0.588943 | 7.4:+6249283 | None:intergenic |
| TTCCCCTGGAAGTTTGTGGG+AGG | 0.589656 | 7.4:-6255870 | MS.gene28776:intron |
| GCTTGCAAATGCAGAAGTTG+TGG | 0.591891 | 7.4:-6251102 | MS.gene28776:CDS |
| TGTACAGAATAGCATTGCAA+TGG | 0.595760 | 7.4:-6253507 | MS.gene28776:intron |
| GCATTGCAGCTCACTATAGT+GGG | 0.596921 | 7.4:-6251877 | MS.gene28776:CDS |
| AAAGGCCCAACCCCAACGCA+CGG | 0.597406 | 7.4:+6252487 | None:intergenic |
| GTACCTCCCACAAACTTCCA+GGG | 0.597986 | 7.4:+6255867 | None:intergenic |
| TTAGGTTTAATGCAGGTCAA+CGG | 0.603196 | 7.4:-6251149 | MS.gene28776:intron |
| ACATACAGATCTAGGAATAG+GGG | 0.604280 | 7.4:+6252308 | None:intergenic |
| GGAGGAAGATACGAGATCAC+GGG | 0.606559 | 7.4:+6255715 | None:intergenic |
| TAGAAGGGCATTCCATCCAA+TGG | 0.607450 | 7.4:-6249662 | MS.gene28776:CDS |
| AGGAGGAAGATACGAGATCA+CGG | 0.607622 | 7.4:+6255714 | None:intergenic |
| ATGTGCGTCGAAATCTCCTA+GGG | 0.610172 | 7.4:-6256535 | MS.gene28776:CDS |
| GTGCATCATGTAAATTTGAA+GGG | 0.610778 | 7.4:-6249813 | MS.gene28776:CDS |
| TGGAAGTGCTTGGACACCCA+AGG | 0.611288 | 7.4:-6249859 | MS.gene28776:CDS |
| TAGATTAAGAATCTTCCTCA+AGG | 0.612482 | 7.4:-6251333 | MS.gene28776:CDS |
| AATGTTTCTGGCTATGACAG+AGG | 0.612713 | 7.4:-6255016 | MS.gene28776:CDS |
| TGTATTTACACCCAGTGGAG+AGG | 0.615293 | 7.4:-6251488 | MS.gene28776:intron |
| ACTAACTCCAGTTCTTTAGG+AGG | 0.618244 | 7.4:+6255697 | None:intergenic |
| ATCCCAAGCAACTTTGCCAA+AGG | 0.618298 | 7.4:+6253464 | None:intergenic |
| CCTCGTGGCACAATATAGAA+GGG | 0.619462 | 7.4:-6249677 | MS.gene28776:CDS |
| AAAGGGGACATGATGCTGCA+GGG | 0.620819 | 7.4:-6249789 | MS.gene28776:CDS |
| AAACTCGCTGGCAACGTCCG+AGG | 0.623661 | 7.4:+6255892 | None:intergenic |
| GAAAATATTATTGAACGGTG+TGG | 0.624304 | 7.4:-6249928 | MS.gene28776:CDS |
| TCCACTGTTACCTCTCCACT+GGG | 0.626056 | 7.4:+6251478 | None:intergenic |
| GGCTCAATGCTATTAGAGAG+TGG | 0.627954 | 7.4:-6251591 | MS.gene28776:CDS |
| AGATTTGCTATCATGTTCTG+GGG | 0.632012 | 7.4:-6252350 | MS.gene28776:CDS |
| ACAGTGCGTCACATTGTGGA+AGG | 0.639089 | 7.4:-6255245 | MS.gene28776:CDS |
| TTCTGTAGTGATATCAGCAG+CGG | 0.640815 | 7.4:+6250040 | None:intergenic |
| TGCTACAGTGCGTCACATTG+TGG | 0.642347 | 7.4:-6255249 | MS.gene28776:CDS |
| CTTTCTCAGTGATTCTGACG+GGG | 0.642676 | 7.4:-6250006 | MS.gene28776:CDS |
| TGTAAATTTGAAGGGCAAAG+GGG | 0.645718 | 7.4:-6249805 | MS.gene28776:CDS |
| ACATACGGCTATGTCTGAAG+TGG | 0.647289 | 7.4:+6249298 | None:intergenic |
| AAATCCTGAAGATTATGCAA+AGG | 0.647444 | 7.4:-6253195 | MS.gene28776:CDS |
| AGTAGCTCCAAACATAAAAG+GGG | 0.650201 | 7.4:-6249951 | MS.gene28776:CDS |
| CCCTTCTATATTGTGCCACG+AGG | 0.652703 | 7.4:+6249677 | None:intergenic |
| TCTAGCATTCAAGAACGCCA+TGG | 0.653651 | 7.4:+6248887 | None:intergenic |
| TCAATCACAGTAGCACCTTG+AGG | 0.657313 | 7.4:+6251318 | None:intergenic |
| TCTAGAGTAGATCAAATACC+GGG | 0.659498 | 7.4:-6248958 | MS.gene28776:CDS |
| GTTGTATGCATAGACCGAAG+AGG | 0.660812 | 7.4:-6249633 | MS.gene28776:intron |
| TAGCCAGAAACATTTGCCGA+AGG | 0.661863 | 7.4:+6255025 | None:intergenic |
| GACCAGGCTGAGGTTGATGG+CGG | 0.663709 | 7.4:-6249149 | MS.gene28776:intron |
| ACTTGGCGTCACACTTCACG+AGG | 0.666144 | 7.4:-6255984 | MS.gene28776:CDS |
| GTAGACCATCCCAAAACACC+CGG | 0.672266 | 7.4:+6248940 | None:intergenic |
| TGTTCAAGATGTGAAAGCAG+AGG | 0.675037 | 7.4:-6255049 | MS.gene28776:CDS |
| TACCTCCCACAAACTTCCAG+GGG | 0.676489 | 7.4:+6255868 | None:intergenic |
| GTTTCTGGCTATGACAGAGG+AGG | 0.682217 | 7.4:-6255013 | MS.gene28776:intron |
| CATAGCCGTATGTTCTTGTG+TGG | 0.682854 | 7.4:-6249288 | MS.gene28776:intron |
| AAATGGATTTGATAGCTGAG+AGG | 0.682911 | 7.4:-6251901 | MS.gene28776:CDS |
| CCAACTAGGTGTCAAAGCTG+GGG | 0.684172 | 7.4:-6255101 | MS.gene28776:intron |
| CCAAGCCTGATGGAAAACCA+TGG | 0.686242 | 7.4:-6248904 | MS.gene28776:CDS |
| TCAACCGGATGAATGATGAA+GGG | 0.689425 | 7.4:+6255495 | None:intergenic |
| GTAGCTCCAAACATAAAAGG+GGG | 0.697648 | 7.4:-6249950 | MS.gene28776:CDS |
| GTTGGAAGTGCAGTGCCCAG+TGG | 0.700189 | 7.4:-6251833 | MS.gene28776:CDS |
| GGTTGCAACATGCTAAAACA+CGG | 0.702738 | 7.4:-6250230 | MS.gene28776:CDS |
| AATGTATGCAATTCTTGGAG+AGG | 0.707152 | 7.4:-6256594 | MS.gene28776:CDS |
| TTGGCATTTAAAGCTCACGA+TGG | 0.719107 | 7.4:-6255540 | MS.gene28776:CDS |
| CTTGGCGTCACACTTCACGA+GGG | 0.722443 | 7.4:-6255983 | MS.gene28776:CDS |
| ATGGATTTGATAGCTGAGAG+GGG | 0.725531 | 7.4:-6251899 | MS.gene28776:CDS |
| TGTATGCAATTCTTGGAGAG+GGG | 0.729175 | 7.4:-6256592 | MS.gene28776:CDS |
| GATGGTCAGAAAAGACGCAG+CGG | 0.742743 | 7.4:-6255522 | MS.gene28776:CDS |
| AAGCCCATAAAATTGCCTCG+TGG | 0.756087 | 7.4:-6249692 | MS.gene28776:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.4 | gene | 6248888 | 6256935 | 6248888 | ID=MS.gene28776 |
| chr7.4 | mRNA | 6248888 | 6256935 | 6248888 | ID=MS.gene28776.t1;Parent=MS.gene28776 |
| chr7.4 | exon | 6256911 | 6256935 | 6256911 | ID=MS.gene28776.t1.exon1;Parent=MS.gene28776.t1 |
| chr7.4 | CDS | 6256911 | 6256935 | 6256911 | ID=cds.MS.gene28776.t1;Parent=MS.gene28776.t1 |
| chr7.4 | exon | 6256446 | 6256633 | 6256446 | ID=MS.gene28776.t1.exon2;Parent=MS.gene28776.t1 |
| chr7.4 | CDS | 6256446 | 6256633 | 6256446 | ID=cds.MS.gene28776.t1;Parent=MS.gene28776.t1 |
| chr7.4 | exon | 6255871 | 6256050 | 6255871 | ID=MS.gene28776.t1.exon3;Parent=MS.gene28776.t1 |
| chr7.4 | CDS | 6255871 | 6256050 | 6255871 | ID=cds.MS.gene28776.t1;Parent=MS.gene28776.t1 |
| chr7.4 | exon | 6255681 | 6255746 | 6255681 | ID=MS.gene28776.t1.exon4;Parent=MS.gene28776.t1 |
| chr7.4 | CDS | 6255681 | 6255746 | 6255681 | ID=cds.MS.gene28776.t1;Parent=MS.gene28776.t1 |
| chr7.4 | exon | 6255470 | 6255562 | 6255470 | ID=MS.gene28776.t1.exon5;Parent=MS.gene28776.t1 |
| chr7.4 | CDS | 6255470 | 6255562 | 6255470 | ID=cds.MS.gene28776.t1;Parent=MS.gene28776.t1 |
| chr7.4 | exon | 6255235 | 6255366 | 6255235 | ID=MS.gene28776.t1.exon6;Parent=MS.gene28776.t1 |
| chr7.4 | CDS | 6255235 | 6255366 | 6255235 | ID=cds.MS.gene28776.t1;Parent=MS.gene28776.t1 |
| chr7.4 | exon | 6255014 | 6255115 | 6255014 | ID=MS.gene28776.t1.exon7;Parent=MS.gene28776.t1 |
| chr7.4 | CDS | 6255014 | 6255115 | 6255014 | ID=cds.MS.gene28776.t1;Parent=MS.gene28776.t1 |
| chr7.4 | exon | 6254819 | 6254896 | 6254819 | ID=MS.gene28776.t1.exon8;Parent=MS.gene28776.t1 |
| chr7.4 | CDS | 6254819 | 6254896 | 6254819 | ID=cds.MS.gene28776.t1;Parent=MS.gene28776.t1 |
| chr7.4 | exon | 6253451 | 6253522 | 6253451 | ID=MS.gene28776.t1.exon9;Parent=MS.gene28776.t1 |
| chr7.4 | CDS | 6253451 | 6253522 | 6253451 | ID=cds.MS.gene28776.t1;Parent=MS.gene28776.t1 |
| chr7.4 | exon | 6253142 | 6253249 | 6253142 | ID=MS.gene28776.t1.exon10;Parent=MS.gene28776.t1 |
| chr7.4 | CDS | 6253142 | 6253249 | 6253142 | ID=cds.MS.gene28776.t1;Parent=MS.gene28776.t1 |
| chr7.4 | exon | 6252878 | 6252975 | 6252878 | ID=MS.gene28776.t1.exon11;Parent=MS.gene28776.t1 |
| chr7.4 | CDS | 6252878 | 6252975 | 6252878 | ID=cds.MS.gene28776.t1;Parent=MS.gene28776.t1 |
| chr7.4 | exon | 6252636 | 6252696 | 6252636 | ID=MS.gene28776.t1.exon12;Parent=MS.gene28776.t1 |
| chr7.4 | CDS | 6252636 | 6252696 | 6252636 | ID=cds.MS.gene28776.t1;Parent=MS.gene28776.t1 |
| chr7.4 | exon | 6252471 | 6252533 | 6252471 | ID=MS.gene28776.t1.exon13;Parent=MS.gene28776.t1 |
| chr7.4 | CDS | 6252471 | 6252533 | 6252471 | ID=cds.MS.gene28776.t1;Parent=MS.gene28776.t1 |
| chr7.4 | exon | 6252314 | 6252370 | 6252314 | ID=MS.gene28776.t1.exon14;Parent=MS.gene28776.t1 |
| chr7.4 | CDS | 6252314 | 6252370 | 6252314 | ID=cds.MS.gene28776.t1;Parent=MS.gene28776.t1 |
| chr7.4 | exon | 6252091 | 6252192 | 6252091 | ID=MS.gene28776.t1.exon15;Parent=MS.gene28776.t1 |
| chr7.4 | CDS | 6252091 | 6252192 | 6252091 | ID=cds.MS.gene28776.t1;Parent=MS.gene28776.t1 |
| chr7.4 | exon | 6251778 | 6251936 | 6251778 | ID=MS.gene28776.t1.exon16;Parent=MS.gene28776.t1 |
| chr7.4 | CDS | 6251778 | 6251936 | 6251778 | ID=cds.MS.gene28776.t1;Parent=MS.gene28776.t1 |
| chr7.4 | exon | 6251489 | 6251620 | 6251489 | ID=MS.gene28776.t1.exon17;Parent=MS.gene28776.t1 |
| chr7.4 | CDS | 6251489 | 6251620 | 6251489 | ID=cds.MS.gene28776.t1;Parent=MS.gene28776.t1 |
| chr7.4 | exon | 6251266 | 6251352 | 6251266 | ID=MS.gene28776.t1.exon18;Parent=MS.gene28776.t1 |
| chr7.4 | CDS | 6251266 | 6251352 | 6251266 | ID=cds.MS.gene28776.t1;Parent=MS.gene28776.t1 |
| chr7.4 | exon | 6251085 | 6251156 | 6251085 | ID=MS.gene28776.t1.exon19;Parent=MS.gene28776.t1 |
| chr7.4 | CDS | 6251085 | 6251156 | 6251085 | ID=cds.MS.gene28776.t1;Parent=MS.gene28776.t1 |
| chr7.4 | exon | 6250206 | 6250292 | 6250206 | ID=MS.gene28776.t1.exon20;Parent=MS.gene28776.t1 |
| chr7.4 | CDS | 6250206 | 6250292 | 6250206 | ID=cds.MS.gene28776.t1;Parent=MS.gene28776.t1 |
| chr7.4 | exon | 6249634 | 6250087 | 6249634 | ID=MS.gene28776.t1.exon21;Parent=MS.gene28776.t1 |
| chr7.4 | CDS | 6249634 | 6250087 | 6249634 | ID=cds.MS.gene28776.t1;Parent=MS.gene28776.t1 |
| chr7.4 | exon | 6249289 | 6249350 | 6249289 | ID=MS.gene28776.t1.exon22;Parent=MS.gene28776.t1 |
| chr7.4 | CDS | 6249289 | 6249350 | 6249289 | ID=cds.MS.gene28776.t1;Parent=MS.gene28776.t1 |
| chr7.4 | exon | 6249097 | 6249165 | 6249097 | ID=MS.gene28776.t1.exon23;Parent=MS.gene28776.t1 |
| chr7.4 | CDS | 6249097 | 6249165 | 6249097 | ID=cds.MS.gene28776.t1;Parent=MS.gene28776.t1 |
| chr7.4 | exon | 6248888 | 6248992 | 6248888 | ID=MS.gene28776.t1.exon24;Parent=MS.gene28776.t1 |
| chr7.4 | CDS | 6248888 | 6248992 | 6248888 | ID=cds.MS.gene28776.t1;Parent=MS.gene28776.t1 |
| Gene Sequence |
| Protein sequence |
