Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene31165.t1 | RHN76065.1 | 95.7 | 799 | 29 | 2 | 1 | 799 | 33 | 826 | 0.00E+00 | 1479.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene31165.t1 | Q6DAH4 | 29.4 | 170 | 102 | 4 | 400 | 554 | 13 | 179 | 1.5e-06 | 56.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene31165.t1 | G7IHP1 | 95.7 | 799 | 29 | 2 | 1 | 799 | 1 | 794 | 0.0e+00 | 1479.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049171 | MS.gene31165 | -0.822637 | 2.13E-53 | -1.69E-46 |
| MS.gene049285 | MS.gene31165 | -0.807398 | 5.15E-50 | -1.69E-46 |
| MS.gene049633 | MS.gene31165 | -0.804777 | 1.84E-49 | -1.69E-46 |
| MS.gene050163 | MS.gene31165 | -0.801367 | 9.31E-49 | -1.69E-46 |
| MS.gene050165 | MS.gene31165 | -0.813458 | 2.53E-51 | -1.69E-46 |
| MS.gene050323 | MS.gene31165 | -0.806448 | 8.19E-50 | -1.69E-46 |
| MS.gene050338 | MS.gene31165 | 0.849174 | 3.83E-60 | -1.69E-46 |
| MS.gene050444 | MS.gene31165 | -0.859566 | 3.78E-63 | -1.69E-46 |
| MS.gene050504 | MS.gene31165 | -0.815453 | 9.17E-52 | -1.69E-46 |
| MS.gene050612 | MS.gene31165 | -0.836265 | 1.04E-56 | -1.69E-46 |
| MS.gene050675 | MS.gene31165 | -0.805048 | 1.61E-49 | -1.69E-46 |
| MS.gene05079 | MS.gene31165 | 0.815189 | 1.05E-51 | -1.69E-46 |
| MS.gene050809 | MS.gene31165 | 0.801512 | 8.69E-49 | -1.69E-46 |
| MS.gene050868 | MS.gene31165 | -0.807042 | 6.13E-50 | -1.69E-46 |
| MS.gene050871 | MS.gene31165 | -0.807219 | 5.62E-50 | -1.69E-46 |
| MS.gene051138 | MS.gene31165 | 0.834134 | 3.57E-56 | -1.69E-46 |
| MS.gene051228 | MS.gene31165 | -0.809254 | 2.07E-50 | -1.69E-46 |
| MS.gene051268 | MS.gene31165 | -0.822194 | 2.70E-53 | -1.69E-46 |
| MS.gene051317 | MS.gene31165 | -0.813571 | 2.39E-51 | -1.69E-46 |
| MS.gene051651 | MS.gene31165 | 0.814128 | 1.80E-51 | -1.69E-46 |
| MS.gene051838 | MS.gene31165 | -0.806658 | 7.39E-50 | -1.69E-46 |
| MS.gene052129 | MS.gene31165 | 0.931101 | 6.21E-94 | -1.69E-46 |
| MS.gene052870 | MS.gene31165 | -0.831542 | 1.57E-55 | -1.69E-46 |
| MS.gene052872 | MS.gene31165 | -0.854023 | 1.62E-61 | -1.69E-46 |
| MS.gene052966 | MS.gene31165 | -0.800589 | 1.34E-48 | -1.69E-46 |
| MS.gene053479 | MS.gene31165 | -0.823223 | 1.55E-53 | -1.69E-46 |
| MS.gene053776 | MS.gene31165 | 0.809174 | 2.16E-50 | -1.69E-46 |
| MS.gene053824 | MS.gene31165 | -0.801113 | 1.05E-48 | -1.69E-46 |
| MS.gene054706 | MS.gene31165 | 0.832028 | 1.19E-55 | -1.69E-46 |
| MS.gene05470 | MS.gene31165 | -0.815824 | 7.58E-52 | -1.69E-46 |
| MS.gene054941 | MS.gene31165 | 0.803082 | 4.13E-49 | -1.69E-46 |
| MS.gene054954 | MS.gene31165 | -0.803666 | 3.13E-49 | -1.69E-46 |
| MS.gene055502 | MS.gene31165 | -0.808118 | 3.62E-50 | -1.69E-46 |
| MS.gene055577 | MS.gene31165 | -0.825029 | 5.86E-54 | -1.69E-46 |
| MS.gene055748 | MS.gene31165 | -0.849813 | 2.54E-60 | -1.69E-46 |
| MS.gene055751 | MS.gene31165 | -0.846286 | 2.39E-59 | -1.69E-46 |
| MS.gene05589 | MS.gene31165 | -0.834647 | 2.66E-56 | -1.69E-46 |
| MS.gene056387 | MS.gene31165 | -0.839423 | 1.60E-57 | -1.69E-46 |
| MS.gene056504 | MS.gene31165 | -0.813257 | 2.81E-51 | -1.69E-46 |
| MS.gene056678 | MS.gene31165 | 0.802689 | 4.98E-49 | -1.69E-46 |
| MS.gene056692 | MS.gene31165 | -0.811497 | 6.80E-51 | -1.69E-46 |
| MS.gene056856 | MS.gene31165 | 0.851058 | 1.14E-60 | -1.69E-46 |
| MS.gene056857 | MS.gene31165 | 0.82588 | 3.68E-54 | -1.69E-46 |
| MS.gene057658 | MS.gene31165 | -0.810989 | 8.76E-51 | -1.69E-46 |
| MS.gene057717 | MS.gene31165 | 0.829524 | 4.91E-55 | -1.69E-46 |
| MS.gene057857 | MS.gene31165 | -0.816435 | 5.54E-52 | -1.69E-46 |
| MS.gene058158 | MS.gene31165 | 0.816374 | 5.72E-52 | -1.69E-46 |
| MS.gene058334 | MS.gene31165 | 0.808415 | 3.13E-50 | -1.69E-46 |
| MS.gene058544 | MS.gene31165 | -0.808354 | 3.23E-50 | -1.69E-46 |
| MS.gene058773 | MS.gene31165 | -0.803858 | 2.85E-49 | -1.69E-46 |
| MS.gene058838 | MS.gene31165 | -0.816861 | 4.44E-52 | -1.69E-46 |
| MS.gene059022 | MS.gene31165 | -0.816523 | 5.29E-52 | -1.69E-46 |
| MS.gene059023 | MS.gene31165 | -0.823722 | 1.19E-53 | -1.69E-46 |
| MS.gene059102 | MS.gene31165 | 0.808642 | 2.80E-50 | -1.69E-46 |
| MS.gene05926 | MS.gene31165 | 0.832274 | 1.04E-55 | -1.69E-46 |
| MS.gene059677 | MS.gene31165 | -0.820984 | 5.14E-53 | -1.69E-46 |
| MS.gene059699 | MS.gene31165 | 0.820168 | 7.91E-53 | -1.69E-46 |
| MS.gene059703 | MS.gene31165 | 0.810966 | 8.86E-51 | -1.69E-46 |
| MS.gene059865 | MS.gene31165 | -0.800021 | 1.75E-48 | -1.69E-46 |
| MS.gene06000 | MS.gene31165 | -0.820961 | 5.20E-53 | -1.69E-46 |
| MS.gene060405 | MS.gene31165 | 0.844987 | 5.38E-59 | -1.69E-46 |
| MS.gene060762 | MS.gene31165 | -0.835701 | 1.44E-56 | -1.69E-46 |
| MS.gene060982 | MS.gene31165 | -0.818955 | 1.50E-52 | -1.69E-46 |
| MS.gene061150 | MS.gene31165 | -0.80895 | 2.41E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene31165.t1 | MTR_2g096670 | 95.745 | 799 | 29 | 2 | 1 | 799 | 1 | 794 | 0.0 | 1556 |
| MS.gene31165.t1 | MTR_7g099710 | 39.255 | 805 | 443 | 11 | 18 | 797 | 14 | 797 | 0.0 | 571 |
| MS.gene31165.t1 | MTR_7g073075 | 46.237 | 93 | 49 | 1 | 82 | 174 | 16 | 107 | 2.19e-16 | 76.6 |
| MS.gene31165.t1 | MTR_7g063050 | 44.086 | 93 | 51 | 1 | 82 | 174 | 16 | 107 | 6.19e-14 | 69.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene31165.t1 | AT2G28780 | 49.494 | 790 | 374 | 11 | 18 | 799 | 10 | 782 | 0.0 | 710 |
| MS.gene31165.t1 | AT3G09450 | 37.659 | 786 | 444 | 15 | 19 | 782 | 6 | 767 | 1.05e-146 | 450 |
Find 168 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACGAAGGTAACGACGATAAA+TGG | 0.138404 | 2.4:+6748902 | MS.gene31165:CDS |
| GTCCAGCTATGTTGAGTTTA+TGG | 0.169702 | 2.4:+6743188 | MS.gene31165:CDS |
| GGCACATGTTGAAGCCCTTT+TGG | 0.213590 | 2.4:-6749397 | None:intergenic |
| GTGTGTTTAGACCATGTTTA+AGG | 0.223189 | 2.4:-6748627 | None:intergenic |
| GAGGATGGCACATGGCTTTC+GGG | 0.231680 | 2.4:+6749888 | MS.gene31165:CDS |
| GTAGCTGGTGCAACACTTTA+TGG | 0.234606 | 2.4:+6743025 | MS.gene31165:CDS |
| ACATTGGGAGAGTTCATATT+TGG | 0.246253 | 2.4:-6749418 | None:intergenic |
| AGTTTCGATGATTCTTTCTA+TGG | 0.249865 | 2.4:-6749328 | None:intergenic |
| GGCTGGGCTTGGACATTTGT+TGG | 0.261014 | 2.4:-6748856 | None:intergenic |
| TTCATAGTGGTTGCTATAAT+AGG | 0.277095 | 2.4:+6749598 | MS.gene31165:CDS |
| GTGGCATTTCGGCTGTGATT+GGG | 0.280433 | 2.4:+6749256 | MS.gene31165:CDS |
| ATAGCAAAGAAAGTGGTTTC+TGG | 0.285067 | 2.4:+6749019 | MS.gene31165:CDS |
| GGTGGCATTTCGGCTGTGAT+TGG | 0.293729 | 2.4:+6749255 | MS.gene31165:CDS |
| AGCTTCTATTGCTGTGGCTT+TGG | 0.297296 | 2.4:+6743243 | MS.gene31165:CDS |
| GCTGGGCTTGGACATTTGTT+GGG | 0.301251 | 2.4:-6748855 | None:intergenic |
| AAAATGCAGGGAATGTTATT+AGG | 0.304540 | 2.4:-6743066 | None:intergenic |
| TGGGCCTGCGGGTGGCATTT+CGG | 0.304664 | 2.4:+6749245 | MS.gene31165:CDS |
| GTTCCTTTAGAGAAATGATT+TGG | 0.308003 | 2.4:-6743220 | None:intergenic |
| AGAGGATGGCACATGGCTTT+CGG | 0.308325 | 2.4:+6749887 | MS.gene31165:CDS |
| AATCTCTCGTGTTAAGTCTT+TGG | 0.311321 | 2.4:+6748113 | MS.gene31165:CDS |
| TATGCTACAATTCAAAGTTT+AGG | 0.311346 | 2.4:+6743166 | MS.gene31165:CDS |
| ATCATAAATGATGCTACTTT+AGG | 0.316843 | 2.4:+6743112 | MS.gene31165:CDS |
| TTGGCAGCTAGTACTGCTTT+AGG | 0.328010 | 2.4:+6743403 | MS.gene31165:CDS |
| GATAGCTAAGAGAATTTCAT+TGG | 0.329080 | 2.4:+6743306 | MS.gene31165:CDS |
| ATAAAATACTCTTTCGCATT+GGG | 0.333551 | 2.4:+6748970 | MS.gene31165:CDS |
| AATTTCTTCAAGACCTTTGA+TGG | 0.337569 | 2.4:-6749781 | None:intergenic |
| TCCACACTTGTTGAATCAAT+TGG | 0.347555 | 2.4:+6749444 | MS.gene31165:CDS |
| GAAGGAGTTTGGCACAAAAT+AGG | 0.348823 | 2.4:-6748810 | None:intergenic |
| TCCAGCTATGTTGAGTTTAT+GGG | 0.350617 | 2.4:+6743189 | MS.gene31165:CDS |
| CAAACCACATTACAATAACT+TGG | 0.357484 | 2.4:+6748510 | MS.gene31165:CDS |
| TTAGACCATGTTTAAGGTCT+TGG | 0.362507 | 2.4:-6748621 | None:intergenic |
| AAATGAATAGGATGCATAAT+AGG | 0.364653 | 2.4:-6743382 | None:intergenic |
| AAAGAAAGTGGTTTCTGGTC+TGG | 0.364944 | 2.4:+6749024 | MS.gene31165:CDS |
| TTGGACATTTGTTGGGCCTT+CGG | 0.367951 | 2.4:-6748848 | None:intergenic |
| TCTTTACGTGGTTGTTGGCT+AGG | 0.368993 | 2.4:+6743139 | MS.gene31165:CDS |
| GATTGTGTTGGTGTATGTAT+TGG | 0.369068 | 2.4:+6743333 | MS.gene31165:CDS |
| GTTGATTGGGAATGATTTGT+AGG | 0.373147 | 2.4:-6748590 | None:intergenic |
| TAGCAAAACTGATTCACAAT+TGG | 0.376735 | 2.4:+6749482 | MS.gene31165:CDS |
| AAGTGTTGCACCAGCTACTA+TGG | 0.379492 | 2.4:-6743020 | None:intergenic |
| TATTATGCATCCTATTCATT+TGG | 0.379859 | 2.4:+6743384 | MS.gene31165:CDS |
| CATGTCTAGTGATGTTGAAA+TGG | 0.381897 | 2.4:+6749854 | MS.gene31165:CDS |
| ATTGGGCCTATCAGTCTTCA+TGG | 0.382307 | 2.4:+6748987 | MS.gene31165:CDS |
| CAATCTAATAGGAATGGAAT+TGG | 0.385293 | 2.4:+6748558 | MS.gene31165:CDS |
| TCCTTGGGCTTTAACATTTG+CGG | 0.386987 | 2.4:-6749097 | None:intergenic |
| CAATTCCATTCCTATTAGAT+TGG | 0.387246 | 2.4:-6748557 | None:intergenic |
| TGATTTCATGTGAAGGAGTT+TGG | 0.391065 | 2.4:-6748821 | None:intergenic |
| ACGACGATAAATGGGCCAAT+TGG | 0.392321 | 2.4:+6748911 | MS.gene31165:CDS |
| AAGAAAGTGGTTTCTGGTCT+GGG | 0.393614 | 2.4:+6749025 | MS.gene31165:CDS |
| TATGTATTGGCTTATTCTAA+TGG | 0.398544 | 2.4:+6743346 | MS.gene31165:CDS |
| ATGTTGAGTTTATGGGCTAT+AGG | 0.405854 | 2.4:+6743196 | MS.gene31165:CDS |
| CTTTCTATGGCGAACTCGCT+TGG | 0.406770 | 2.4:-6749315 | None:intergenic |
| AAACTTGAATGATTTCATCT+TGG | 0.407025 | 2.4:-6749805 | None:intergenic |
| CTTCAACGAAGCCGTATGTA+TGG | 0.407950 | 2.4:+6749225 | MS.gene31165:CDS |
| GAGGTAGATACCAATCTAAT+AGG | 0.411762 | 2.4:+6748547 | MS.gene31165:CDS |
| CTTTCGGGTTTGAGAGAAGA+TGG | 0.412711 | 2.4:+6749903 | MS.gene31165:CDS |
| GGAAAGAAGCTTGGTTCGTT+TGG | 0.414887 | 2.4:-6748139 | None:intergenic |
| AGGCTCATTATCAAAGTTAG+TGG | 0.415380 | 2.4:+6749626 | MS.gene31165:CDS |
| CGAAGGTAACGACGATAAAT+GGG | 0.421581 | 2.4:+6748903 | MS.gene31165:CDS |
| AAAGCCCAAGGAACGGTGAT+TGG | 0.424570 | 2.4:+6749108 | MS.gene31165:CDS |
| CGACGATAAATGGGCCAATT+GGG | 0.426579 | 2.4:+6748912 | MS.gene31165:CDS |
| GTGACTCTTTACGTGGTTGT+TGG | 0.428893 | 2.4:+6743134 | MS.gene31165:CDS |
| CAGTTCCAATCACCGTTCCT+TGG | 0.432211 | 2.4:-6749113 | None:intergenic |
| TAATGAGCTTAGAAAATTTG+TGG | 0.433373 | 2.4:+6749536 | MS.gene31165:CDS |
| GAGATCACCACTAAACCTTA+TGG | 0.433380 | 2.4:+6742925 | MS.gene31165:CDS |
| GTGGCCGTAAGCTATGTTTC+AGG | 0.434352 | 2.4:+6749054 | MS.gene31165:CDS |
| GGTAATTCTTGGTGAGTTGT+TGG | 0.437818 | 2.4:-6748775 | None:intergenic |
| AGTTCCAATCACCGTTCCTT+GGG | 0.438721 | 2.4:-6749112 | None:intergenic |
| ATTAGGCTTGTAATTGAAGT+AGG | 0.441014 | 2.4:-6743049 | None:intergenic |
| GGTCCAAATCATTTCTCTAA+AGG | 0.442276 | 2.4:+6743217 | MS.gene31165:CDS |
| GATTCTTGTCACTACTTCCA+TGG | 0.446613 | 2.4:+6749184 | MS.gene31165:CDS |
| GTACTAGCTGCCAAATGAAT+AGG | 0.450169 | 2.4:-6743394 | None:intergenic |
| AATGCTAAACACTCTTTCCT+TGG | 0.451588 | 2.4:+6748679 | MS.gene31165:CDS |
| CTTTACGTGGTTGTTGGCTA+GGG | 0.455719 | 2.4:+6743140 | MS.gene31165:CDS |
| AGAAAATCAAAGAAAACTTA+AGG | 0.461877 | 2.4:+6749506 | MS.gene31165:CDS |
| AGCAAAACTGATTCACAATT+GGG | 0.462198 | 2.4:+6749483 | MS.gene31165:CDS |
| TTATAGCAACCACTATGAAA+TGG | 0.463626 | 2.4:-6749594 | None:intergenic |
| TGTTGAAGAAACTCACCATA+AGG | 0.464536 | 2.4:-6742940 | None:intergenic |
| AAACACTCTTTCCTTGGTGG+TGG | 0.466264 | 2.4:+6748685 | MS.gene31165:CDS |
| TGAATAGGATGGCATGAGGT+GGG | 0.468367 | 2.4:+6748465 | MS.gene31165:intron |
| TCTTGGTCAAGAATGTTGAT+TGG | 0.470206 | 2.4:-6748604 | None:intergenic |
| CTTGGTCAAGAATGTTGATT+GGG | 0.470663 | 2.4:-6748603 | None:intergenic |
| CAATGAGGGAACTTGTTCAA+TGG | 0.474839 | 2.4:+6750093 | MS.gene31165:CDS |
| ATAAGCCCATGAAGACTGAT+AGG | 0.475203 | 2.4:-6748993 | None:intergenic |
| GGAACTGTGTACGGTGTGTT+GGG | 0.476790 | 2.4:+6749129 | MS.gene31165:CDS |
| CATACATACGGCTTCGTTGA+AGG | 0.483582 | 2.4:-6749224 | None:intergenic |
| CACCCGCAGGCCCATACATA+CGG | 0.486745 | 2.4:-6749236 | None:intergenic |
| AATGAGGGAACTTGTTCAAT+GGG | 0.487246 | 2.4:+6750094 | MS.gene31165:CDS |
| GTATAGTGATGAAGGTGAGA+AGG | 0.487410 | 2.4:+6749983 | MS.gene31165:CDS |
| GGCTTTGGCTGCATTTGTTG+TGG | 0.488680 | 2.4:+6743258 | MS.gene31165:CDS |
| TGGAACTGTGTACGGTGTGT+TGG | 0.488951 | 2.4:+6749128 | MS.gene31165:CDS |
| AAACTCACCATAAGGTTTAG+TGG | 0.489783 | 2.4:-6742932 | None:intergenic |
| CACAAATTAAATACTGCTAG+AGG | 0.490332 | 2.4:-6750123 | None:intergenic |
| GCCCATAAACTCAACATAGC+TGG | 0.491924 | 2.4:-6743190 | None:intergenic |
| GAGACTGAAGCTTCTTGTAA+AGG | 0.496265 | 2.4:+6748053 | MS.gene31165:CDS |
| CAACAAGTGTGGACAAACAT+TGG | 0.496700 | 2.4:-6749434 | None:intergenic |
| AACAAGTGTGGACAAACATT+GGG | 0.497246 | 2.4:-6749433 | None:intergenic |
| GATAAAATACTCTTTCGCAT+TGG | 0.499234 | 2.4:+6748969 | MS.gene31165:CDS |
| GCTTAGAAAATTTGTGGTAG+AGG | 0.499718 | 2.4:+6749542 | MS.gene31165:CDS |
| CTATGGCGAACTCGCTTGGT+GGG | 0.507072 | 2.4:-6749311 | None:intergenic |
| TGGCATTTCGGCTGTGATTG+GGG | 0.516872 | 2.4:+6749257 | MS.gene31165:CDS |
| TCTATGGCGAACTCGCTTGG+TGG | 0.517047 | 2.4:-6749312 | None:intergenic |
| ATGTCTAGTGATGTTGAAAT+GGG | 0.517771 | 2.4:+6749855 | MS.gene31165:CDS |
| TTCATTGGGTCAGATTGTGT+TGG | 0.518394 | 2.4:+6743321 | MS.gene31165:CDS |
| TCTCCCAAGTTATTGTAATG+TGG | 0.521521 | 2.4:-6748514 | None:intergenic |
| GCTAAACACTCTTTCCTTGG+TGG | 0.523877 | 2.4:+6748682 | MS.gene31165:CDS |
| AAACCACATTACAATAACTT+GGG | 0.524370 | 2.4:+6748511 | MS.gene31165:CDS |
| AGCCGTATGTATGGGCCTGC+GGG | 0.529646 | 2.4:+6749234 | MS.gene31165:CDS |
| ATAGCTAAGAGAATTTCATT+GGG | 0.530885 | 2.4:+6743307 | MS.gene31165:CDS |
| TGAGACAATAGAGATTGAAA+AGG | 0.533503 | 2.4:+6750070 | MS.gene31165:CDS |
| TTAGCTTGCACCATAGTAGC+TGG | 0.538892 | 2.4:+6743010 | MS.gene31165:CDS |
| GAGGAAAATACTTCTGCACT+TGG | 0.539006 | 2.4:+6748087 | MS.gene31165:CDS |
| ATCATGTGCTCTTCCATCAA+AGG | 0.540330 | 2.4:+6749768 | MS.gene31165:CDS |
| TTGGGCCTATCAGTCTTCAT+GGG | 0.541653 | 2.4:+6748988 | MS.gene31165:CDS |
| AAGTGAACTTCTACATGCTA+AGG | 0.543626 | 2.4:+6749743 | MS.gene31165:CDS |
| AGATACCAATCTAATAGGAA+TGG | 0.545673 | 2.4:+6748552 | MS.gene31165:CDS |
| CGGTTGATGATTTCATGTGA+AGG | 0.549694 | 2.4:-6748828 | None:intergenic |
| AGCTACTATGGTGCAAGCTA+AGG | 0.550762 | 2.4:-6743008 | None:intergenic |
| AGAGATTGAAAAGGCAATGA+GGG | 0.552190 | 2.4:+6750079 | MS.gene31165:CDS |
| TAGTGATGAAGGTGAGAAGG+AGG | 0.554892 | 2.4:+6749986 | MS.gene31165:CDS |
| ACAACCACGTATGAAAATGC+AGG | 0.556350 | 2.4:-6743079 | None:intergenic |
| GAAAAGCTCAAATCTTCTCC+CGG | 0.557561 | 2.4:+6748945 | MS.gene31165:CDS |
| CATGATGGTGGAAAGAAGCT+TGG | 0.559300 | 2.4:-6748148 | None:intergenic |
| TCCAATTGATTCAACAAGTG+TGG | 0.561122 | 2.4:-6749445 | None:intergenic |
| GAGAAGTTGTATAGTGATGA+AGG | 0.561390 | 2.4:+6749975 | MS.gene31165:CDS |
| CGTATGTATGGGCCTGCGGG+TGG | 0.561768 | 2.4:+6749237 | MS.gene31165:CDS |
| TTCTTGGTGAGTTGTTGGAA+TGG | 0.566246 | 2.4:-6748770 | None:intergenic |
| AGGATGGCATGAGGTGGGAG+AGG | 0.567122 | 2.4:+6748470 | MS.gene31165:intron |
| TAGCAAGCAAAACGAGGGTA+AGG | 0.567321 | 2.4:-6743457 | None:intergenic |
| TTCAACGAAGCCGTATGTAT+GGG | 0.573243 | 2.4:+6749226 | MS.gene31165:CDS |
| ACAGCCGAAATGCCACCCGC+AGG | 0.576761 | 2.4:-6749249 | None:intergenic |
| GAGTTGTTGGAATGGTATGA+AGG | 0.577072 | 2.4:-6748762 | None:intergenic |
| TTGAATAGGATGGCATGAGG+TGG | 0.577572 | 2.4:+6748464 | MS.gene31165:intron |
| TTTAGGTGTACTTGCTTGTG+TGG | 0.579366 | 2.4:+6743420 | MS.gene31165:CDS |
| TGTAAAGGTAATTAGTGAGG+AGG | 0.580554 | 2.4:+6748068 | MS.gene31165:CDS |
| GCCGCAAATGTTAAAGCCCA+AGG | 0.580581 | 2.4:+6749096 | MS.gene31165:CDS |
| TCTTCAACATTCCACCATTG+TGG | 0.583422 | 2.4:+6742954 | MS.gene31165:CDS |
| GAAACATAGCTTACGGCCAC+GGG | 0.584089 | 2.4:-6749051 | None:intergenic |
| TCTACCTGAAACATAGCTTA+CGG | 0.586470 | 2.4:-6749058 | None:intergenic |
| ATCAAATGTGTTGATTGAGA+AGG | 0.588852 | 2.4:-6743286 | None:intergenic |
| TACTATGGTGCAAGCTAAGG+CGG | 0.590061 | 2.4:-6743005 | None:intergenic |
| AAGCCGTATGTATGGGCCTG+CGG | 0.590070 | 2.4:+6749233 | MS.gene31165:CDS |
| TACAAGGTAGCGCATGATGG+TGG | 0.593997 | 2.4:-6748160 | None:intergenic |
| CTTGACCAAGACCTTAAACA+TGG | 0.594831 | 2.4:+6748616 | MS.gene31165:CDS |
| ATGGGAAAGTCAAGAGAGGA+TGG | 0.595992 | 2.4:+6749873 | MS.gene31165:CDS |
| TTTCTGGTCTGGGCTTCCCG+TGG | 0.596132 | 2.4:+6749035 | MS.gene31165:CDS |
| AGGAACAGCTTCTATTGCTG+TGG | 0.597039 | 2.4:+6743237 | MS.gene31165:CDS |
| TAGAGATTGAAAAGGCAATG+AGG | 0.600885 | 2.4:+6750078 | MS.gene31165:CDS |
| TGAAACATAGCTTACGGCCA+CGG | 0.608815 | 2.4:-6749052 | None:intergenic |
| ACCTGGTAGCAAGCAAAACG+AGG | 0.611529 | 2.4:-6743463 | None:intergenic |
| ACGGTGATTGGAACTGTGTA+CGG | 0.612228 | 2.4:+6749120 | MS.gene31165:CDS |
| TTATTGTATAGCAAAGAAAG+TGG | 0.612494 | 2.4:+6749012 | MS.gene31165:CDS |
| AGACACTCTCTCCACAATGG+TGG | 0.614352 | 2.4:-6742965 | None:intergenic |
| ACAAATTAAATACTGCTAGA+GGG | 0.619285 | 2.4:-6750122 | None:intergenic |
| AGTTGTTGGAATGGTATGAA+GGG | 0.627832 | 2.4:-6748761 | None:intergenic |
| ACTTACAAGGTAGCGCATGA+TGG | 0.628244 | 2.4:-6748163 | None:intergenic |
| TCTTGTAAAGGTAATTAGTG+AGG | 0.629755 | 2.4:+6748065 | MS.gene31165:CDS |
| ACTTTAGGTGACTCTTTACG+TGG | 0.633071 | 2.4:+6743127 | MS.gene31165:CDS |
| AAACTTGTGAAAATGAACCA+TGG | 0.633234 | 2.4:-6749201 | None:intergenic |
| CAACCACGTATGAAAATGCA+GGG | 0.636482 | 2.4:-6743078 | None:intergenic |
| ACATGGTCTAAACACACTTG+AGG | 0.636524 | 2.4:+6748633 | MS.gene31165:CDS |
| AGTCAAGAGAGGATGGCACA+TGG | 0.639876 | 2.4:+6749880 | MS.gene31165:CDS |
| TGAAATGGGAAAGTCAAGAG+AGG | 0.644013 | 2.4:+6749869 | MS.gene31165:CDS |
| CACATGAAATCATCAACCGA+AGG | 0.646756 | 2.4:+6748832 | MS.gene31165:CDS |
| AAATGTTAAAGCCCAAGGAA+CGG | 0.649091 | 2.4:+6749101 | MS.gene31165:CDS |
| GAGAGACACTCTCTCCACAA+TGG | 0.669619 | 2.4:-6742968 | None:intergenic |
| CTTGGGAGAGAAACTTCAAG+AGG | 0.675115 | 2.4:+6748528 | MS.gene31165:CDS |
| CCTGGTAGCAAGCAAAACGA+GGG | 0.704969 | 2.4:-6743462 | None:intergenic |
| CAGTAAGTGAACCACCACCA+AGG | 0.716844 | 2.4:-6748696 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2.4 | gene | 6742920 | 6750139 | 6742920 | ID=MS.gene31165 |
| chr2.4 | mRNA | 6742920 | 6750139 | 6742920 | ID=MS.gene31165.t1;Parent=MS.gene31165 |
| chr2.4 | exon | 6742920 | 6743483 | 6742920 | ID=MS.gene31165.t1.exon1;Parent=MS.gene31165.t1 |
| chr2.4 | CDS | 6742920 | 6743483 | 6742920 | ID=cds.MS.gene31165.t1;Parent=MS.gene31165.t1 |
| chr2.4 | exon | 6748012 | 6748179 | 6748012 | ID=MS.gene31165.t1.exon2;Parent=MS.gene31165.t1 |
| chr2.4 | CDS | 6748012 | 6748179 | 6748012 | ID=cds.MS.gene31165.t1;Parent=MS.gene31165.t1 |
| chr2.4 | exon | 6748472 | 6750139 | 6748472 | ID=MS.gene31165.t1.exon3;Parent=MS.gene31165.t1 |
| chr2.4 | CDS | 6748472 | 6750139 | 6748472 | ID=cds.MS.gene31165.t1;Parent=MS.gene31165.t1 |
| Gene Sequence |
| Protein sequence |
