Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene32929.t1 | XP_003603080.1 | 94.7 | 471 | 22 | 3 | 1 | 470 | 1 | 469 | 1.40E-250 | 875.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene32929.t1 | G7J6Y7 | 94.7 | 471 | 22 | 3 | 1 | 470 | 1 | 469 | 1.0e-250 | 875.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene04918 | MS.gene32929 | 0.825661 | 4.15E-54 | -1.69E-46 |
| MS.gene04919 | MS.gene32929 | 0.831489 | 1.62E-55 | -1.69E-46 |
| MS.gene04920 | MS.gene32929 | 0.845381 | 4.21E-59 | -1.69E-46 |
| MS.gene049283 | MS.gene32929 | 0.856043 | 4.20E-62 | -1.69E-46 |
| MS.gene049413 | MS.gene32929 | 0.801881 | 7.30E-49 | -1.69E-46 |
| MS.gene049499 | MS.gene32929 | 0.834698 | 2.58E-56 | -1.69E-46 |
| MS.gene049983 | MS.gene32929 | 0.821692 | 3.53E-53 | -1.69E-46 |
| MS.gene050414 | MS.gene32929 | 0.829377 | 5.33E-55 | -1.69E-46 |
| MS.gene050961 | MS.gene32929 | 0.823334 | 1.46E-53 | -1.69E-46 |
| MS.gene051043 | MS.gene32929 | 0.801529 | 8.62E-49 | -1.69E-46 |
| MS.gene051226 | MS.gene32929 | 0.804226 | 2.39E-49 | -1.69E-46 |
| MS.gene051637 | MS.gene32929 | 0.824075 | 9.83E-54 | -1.69E-46 |
| MS.gene051699 | MS.gene32929 | 0.815751 | 7.87E-52 | -1.69E-46 |
| MS.gene051821 | MS.gene32929 | 0.823105 | 1.66E-53 | -1.69E-46 |
| MS.gene051823 | MS.gene32929 | 0.818441 | 1.96E-52 | -1.69E-46 |
| MS.gene051959 | MS.gene32929 | 0.853606 | 2.14E-61 | -1.69E-46 |
| MS.gene051960 | MS.gene32929 | 0.854013 | 1.63E-61 | -1.69E-46 |
| MS.gene052016 | MS.gene32929 | 0.841807 | 3.80E-58 | -1.69E-46 |
| MS.gene052118 | MS.gene32929 | 0.829161 | 6.01E-55 | -1.69E-46 |
| MS.gene052533 | MS.gene32929 | 0.825283 | 5.10E-54 | -1.69E-46 |
| MS.gene053228 | MS.gene32929 | 0.81731 | 3.52E-52 | -1.69E-46 |
| MS.gene053726 | MS.gene32929 | 0.811671 | 6.23E-51 | -1.69E-46 |
| MS.gene054178 | MS.gene32929 | 0.816683 | 4.87E-52 | -1.69E-46 |
| MS.gene054892 | MS.gene32929 | 0.870084 | 1.91E-66 | -1.69E-46 |
| MS.gene054893 | MS.gene32929 | 0.875779 | 2.35E-68 | -1.69E-46 |
| MS.gene054957 | MS.gene32929 | 0.822109 | 2.82E-53 | -1.69E-46 |
| MS.gene055150 | MS.gene32929 | 0.826607 | 2.47E-54 | -1.69E-46 |
| MS.gene055229 | MS.gene32929 | 0.814833 | 1.26E-51 | -1.69E-46 |
| MS.gene05539 | MS.gene32929 | 0.800181 | 1.63E-48 | -1.69E-46 |
| MS.gene055724 | MS.gene32929 | 0.805188 | 1.51E-49 | -1.69E-46 |
| MS.gene055803 | MS.gene32929 | 0.808103 | 3.65E-50 | -1.69E-46 |
| MS.gene055886 | MS.gene32929 | 0.805739 | 1.15E-49 | -1.69E-46 |
| MS.gene05624 | MS.gene32929 | 0.843203 | 1.62E-58 | -1.69E-46 |
| MS.gene056677 | MS.gene32929 | 0.82452 | 7.72E-54 | -1.69E-46 |
| MS.gene056699 | MS.gene32929 | 0.817385 | 3.39E-52 | -1.69E-46 |
| MS.gene057093 | MS.gene32929 | 0.81582 | 7.60E-52 | -1.69E-46 |
| MS.gene057155 | MS.gene32929 | 0.811774 | 5.92E-51 | -1.69E-46 |
| MS.gene057174 | MS.gene32929 | 0.826333 | 2.87E-54 | -1.69E-46 |
| MS.gene057622 | MS.gene32929 | 0.829162 | 6.01E-55 | -1.69E-46 |
| MS.gene058095 | MS.gene32929 | 0.841388 | 4.90E-58 | -1.69E-46 |
| MS.gene058592 | MS.gene32929 | 0.839149 | 1.88E-57 | -1.69E-46 |
| MS.gene058781 | MS.gene32929 | 0.804512 | 2.08E-49 | -1.69E-46 |
| MS.gene05878 | MS.gene32929 | 0.85396 | 1.69E-61 | -1.69E-46 |
| MS.gene05952 | MS.gene32929 | 0.875523 | 2.88E-68 | -1.69E-46 |
| MS.gene05956 | MS.gene32929 | 0.832081 | 1.16E-55 | -1.69E-46 |
| MS.gene059634 | MS.gene32929 | 0.81836 | 2.04E-52 | -1.69E-46 |
| MS.gene05985 | MS.gene32929 | -0.832208 | 1.08E-55 | -1.69E-46 |
| MS.gene059949 | MS.gene32929 | 0.809826 | 1.56E-50 | -1.69E-46 |
| MS.gene06023 | MS.gene32929 | 0.844781 | 6.11E-59 | -1.69E-46 |
| MS.gene060413 | MS.gene32929 | 0.83912 | 1.92E-57 | -1.69E-46 |
| MS.gene060522 | MS.gene32929 | 0.876176 | 1.72E-68 | -1.69E-46 |
| MS.gene060933 | MS.gene32929 | 0.810916 | 9.09E-51 | -1.69E-46 |
| MS.gene060937 | MS.gene32929 | 0.821492 | 3.92E-53 | -1.69E-46 |
| MS.gene060964 | MS.gene32929 | 0.827829 | 1.26E-54 | -1.69E-46 |
| MS.gene061100 | MS.gene32929 | 0.826942 | 2.06E-54 | -1.69E-46 |
| MS.gene061243 | MS.gene32929 | 0.801181 | 1.02E-48 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene32929.t1 | MTR_3g102120 | 94.692 | 471 | 22 | 3 | 1 | 470 | 1 | 469 | 0.0 | 883 |
| MS.gene32929.t1 | MTR_1g019040 | 59.660 | 471 | 154 | 13 | 3 | 470 | 7 | 444 | 1.35e-176 | 503 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene32929.t1 | AT4G06536 | 51.149 | 174 | 57 | 3 | 306 | 464 | 3 | 163 | 2.61e-53 | 177 |
| MS.gene32929.t1 | AT4G06534 | 33.882 | 304 | 156 | 14 | 25 | 309 | 26 | 303 | 3.37e-37 | 141 |
Find 96 sgRNAs with CRISPR-Local
Find 135 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTGTTTCGCAGTAATGTTTC+TGG | 0.124831 | 3.1:+81020391 | MS.gene32929:CDS |
| ATTATGGTATTGGTTAATTT+TGG | 0.149979 | 3.1:+81021979 | MS.gene32929:CDS |
| TTGATTCTCATTGGCTTAAT+AGG | 0.191314 | 3.1:+81022136 | MS.gene32929:CDS |
| GGTGATAAGATGAAGCTTAT+TGG | 0.237777 | 3.1:+81020856 | MS.gene32929:CDS |
| AATGGTTCTGTTTATCTTGA+TGG | 0.259478 | 3.1:+81021081 | MS.gene32929:CDS |
| GCTGCTGATGCTGTTGAAAA+TGG | 0.280998 | 3.1:+81020460 | MS.gene32929:CDS |
| AGTTATTCAAAATAATTCTA+TGG | 0.287566 | 3.1:+81020690 | MS.gene32929:CDS |
| GTTGAAGAAATGAAGGTTAA+TGG | 0.290085 | 3.1:+81020940 | MS.gene32929:CDS |
| TGGCATGTGATTATGAATTC+TGG | 0.309761 | 3.1:-81020320 | None:intergenic |
| GCTGCACCTGCAGGTGATTA+TGG | 0.313015 | 3.1:+81020565 | MS.gene32929:CDS |
| CCGTTACCTGGTCCTGTTGT+AGG | 0.320947 | 3.1:+81020739 | MS.gene32929:CDS |
| AGCTGCTAATATAGACATTA+TGG | 0.325126 | 3.1:+81021963 | MS.gene32929:CDS |
| TTGTTTGAAATCGTAATAGA+TGG | 0.343448 | 3.1:+81022234 | MS.gene32929:CDS |
| CCCATTGTTGTGGCTTCCTT+TGG | 0.343611 | 3.1:-81022166 | None:intergenic |
| GTGATAAGATGAAGCTTATT+GGG | 0.345352 | 3.1:+81020857 | MS.gene32929:CDS |
| GAACAACAAATTTGTTCAGC+TGG | 0.355141 | 3.1:+81020419 | MS.gene32929:CDS |
| ATAGATTAAAATTAAGACTA+TGG | 0.358611 | 3.1:-81020236 | None:intergenic |
| ATAGGAACTGATAGGGTAAT+TGG | 0.362823 | 3.1:+81021829 | MS.gene32929:CDS |
| TCAAAGAAGGTTACACTGTT+AGG | 0.372240 | 3.1:+81020535 | MS.gene32929:CDS |
| GGTGTTCTTTGAGCATTTGC+TGG | 0.373884 | 3.1:-81022024 | None:intergenic |
| TAATATAGACATTATGGTAT+TGG | 0.375543 | 3.1:+81021969 | MS.gene32929:CDS |
| CTGGATTGAAAATCCATCTA+TGG | 0.380170 | 3.1:+81020438 | MS.gene32929:CDS |
| TACCTTGTTCTAATTGATGA+TGG | 0.384921 | 3.1:-81020348 | None:intergenic |
| CATCTGAAGCAGAGATTAGT+TGG | 0.398628 | 3.1:+81020596 | MS.gene32929:CDS |
| CAGAGTGGATAGGAACTGAT+AGG | 0.399932 | 3.1:+81021821 | MS.gene32929:CDS |
| GCTTATTGGGAAAGGGAATT+CGG | 0.400140 | 3.1:+81020870 | MS.gene32929:CDS |
| TGGGTAGGATTGATTCTCAT+TGG | 0.405419 | 3.1:+81022127 | MS.gene32929:CDS |
| AAGAAAACCTTCTTCTGCCT+TGG | 0.410505 | 3.1:-81021865 | None:intergenic |
| TTTCAAAATATGTTTCTTGT+GGG | 0.419914 | 3.1:-81020774 | None:intergenic |
| GAAAGGGAATTCGGAGGCAT+TGG | 0.443470 | 3.1:+81020879 | MS.gene32929:CDS |
| CCAAAGGAAGCCACAACAAT+GGG | 0.444127 | 3.1:+81022166 | MS.gene32929:CDS |
| AAAGTTCCTGGGAGTTATCC+TGG | 0.448473 | 3.1:+81021039 | MS.gene32929:CDS |
| GGGAGTTATCCTGGTAGCAT+TGG | 0.450226 | 3.1:+81021048 | MS.gene32929:CDS |
| ACAGCATCAGCAGCCATAGA+TGG | 0.451521 | 3.1:-81020451 | None:intergenic |
| ACTGATAGGGTAATTGGTTG+TGG | 0.452337 | 3.1:+81021835 | MS.gene32929:CDS |
| CCAGGAACTTTCAAAACAAC+AGG | 0.459646 | 3.1:-81021027 | None:intergenic |
| AAAACACAGTTTCCTACAAC+AGG | 0.466548 | 3.1:-81020751 | None:intergenic |
| ATTTCAAAATATGTTTCTTG+TGG | 0.471502 | 3.1:-81020775 | None:intergenic |
| CTGGTTCAACGGAATTTCTA+CGG | 0.472523 | 3.1:-81020282 | None:intergenic |
| TCGTTGGGTTTGACAATTGG+TGG | 0.478549 | 3.1:+81021003 | MS.gene32929:CDS |
| AAGGTTAATGGCAGAGAGAA+TGG | 0.486017 | 3.1:+81020952 | MS.gene32929:CDS |
| AGAACAGCTTTGCCGTTACC+TGG | 0.487570 | 3.1:+81020727 | MS.gene32929:CDS |
| GCTATCATCGTCGTAACCTA+TGG | 0.495429 | 3.1:-81022088 | None:intergenic |
| GAGTGCTAAATTCTTCTGTC+TGG | 0.500649 | 3.1:-81021924 | None:intergenic |
| GGATCATGTGCTGCACCTGC+AGG | 0.500904 | 3.1:+81020556 | MS.gene32929:CDS |
| GGTGATACAAGGCATGGATT+TGG | 0.501565 | 3.1:-81022045 | None:intergenic |
| AGATGAAGCTTATTGGGAAA+GGG | 0.502001 | 3.1:+81020863 | MS.gene32929:CDS |
| CAGAAAGTTAGATTAAATCC+TGG | 0.504257 | 3.1:+81020649 | MS.gene32929:CDS |
| ATTTGATCCAAGGCAGAAGA+AGG | 0.506798 | 3.1:+81021858 | MS.gene32929:CDS |
| TAGCAAAGAATTATTCTCCA+TGG | 0.508073 | 3.1:+81022107 | MS.gene32929:CDS |
| AAATATTGTTCCCATTGTTG+TGG | 0.510766 | 3.1:-81022176 | None:intergenic |
| TCTATATTAGCAGCTAATGT+TGG | 0.513484 | 3.1:-81021955 | None:intergenic |
| GTAAGTTCTCCTGCTGCCAT+AGG | 0.513610 | 3.1:+81022072 | MS.gene32929:CDS |
| AAGATGAAGCTTATTGGGAA+AGG | 0.523093 | 3.1:+81020862 | MS.gene32929:CDS |
| GAATAGTGTTGAAGAAATGA+AGG | 0.524243 | 3.1:+81020933 | MS.gene32929:CDS |
| GAAAGCTATGATGTTGTACT+TGG | 0.528509 | 3.1:-81022270 | None:intergenic |
| AAATTCATCGTCACGCGAAG+AGG | 0.531386 | 3.1:-81020809 | None:intergenic |
| GCGTGACGATGAATTTGAAT+CGG | 0.538244 | 3.1:+81020816 | MS.gene32929:CDS |
| ATCTGAAGCAGAGATTAGTT+GGG | 0.538447 | 3.1:+81020597 | MS.gene32929:CDS |
| ACCTTCTTTGATGATGATGA+TGG | 0.540282 | 3.1:-81020523 | None:intergenic |
| TCGTCGTAACCTATGGCAGC+AGG | 0.540303 | 3.1:-81022081 | None:intergenic |
| GCCATCATCATCATCAAAGA+AGG | 0.543452 | 3.1:+81020522 | MS.gene32929:CDS |
| AAGAATTATTCTCCATGGGT+AGG | 0.547654 | 3.1:+81022112 | MS.gene32929:CDS |
| TCTCTTCCATAATCACCTGC+AGG | 0.552219 | 3.1:-81020571 | None:intergenic |
| GCAGCTAATGTTGGATACAA+TGG | 0.556127 | 3.1:-81021946 | None:intergenic |
| TTGGTTGTGGATTTGATCCA+AGG | 0.557657 | 3.1:+81021848 | MS.gene32929:CDS |
| TTAATGGCAGAGAGAATGGT+GGG | 0.559463 | 3.1:+81020956 | MS.gene32929:CDS |
| GAGTTAAAACCAATGCTACC+AGG | 0.563405 | 3.1:-81021057 | None:intergenic |
| AACTTACAAGTGGTGATACA+AGG | 0.564357 | 3.1:-81022056 | None:intergenic |
| CTGATGCTGTTGAAAATGGA+TGG | 0.566227 | 3.1:+81020464 | MS.gene32929:CDS |
| TCGGTAAGAAAGAGTGTGGA+AGG | 0.566648 | 3.1:+81020835 | MS.gene32929:CDS |
| AGACTCTTCATCAAAATCCA+TGG | 0.570947 | 3.1:-81022202 | None:intergenic |
| TCTGAGAAGGCAGAGTGGAT+AGG | 0.571845 | 3.1:+81021811 | MS.gene32929:CDS |
| TCTAATTGATGATGGACACT+TGG | 0.579397 | 3.1:-81020340 | None:intergenic |
| CAGTTTCCTACAACAGGACC+AGG | 0.580501 | 3.1:-81020745 | None:intergenic |
| TGGGAACAATATTTCAACCA+TGG | 0.581189 | 3.1:+81022185 | MS.gene32929:CDS |
| AGCAAAGAATTATTCTCCAT+GGG | 0.584762 | 3.1:+81022108 | MS.gene32929:CDS |
| TGAATCGGTAAGAAAGAGTG+TGG | 0.595163 | 3.1:+81020831 | MS.gene32929:CDS |
| ATGAGAATCAATCCTACCCA+TGG | 0.595354 | 3.1:-81022124 | None:intergenic |
| GCATTGGTTCATGTTACAAG+TGG | 0.596254 | 3.1:+81020895 | MS.gene32929:CDS |
| GCAGTTATAGCATCCACAGT+TGG | 0.601221 | 3.1:+81020202 | MS.gene32929:CDS |
| ACTTGTATTCGAATCTGAGA+AGG | 0.604378 | 3.1:+81021798 | MS.gene32929:CDS |
| ACCAAAGGAAGCCACAACAA+TGG | 0.609473 | 3.1:+81022165 | MS.gene32929:CDS |
| AGAGTGGATAGGAACTGATA+GGG | 0.611827 | 3.1:+81021822 | MS.gene32929:CDS |
| CATTGGTTCATGTTACAAGT+GGG | 0.614555 | 3.1:+81020896 | MS.gene32929:CDS |
| CTTAATAGGACTACAACCAA+AGG | 0.619022 | 3.1:+81022150 | MS.gene32929:CDS |
| CCTACAACAGGACCAGGTAA+CGG | 0.635042 | 3.1:-81020739 | None:intergenic |
| GTTAATGGCAGAGAGAATGG+TGG | 0.637402 | 3.1:+81020955 | MS.gene32929:CDS |
| ATGCTACCAGGATAACTCCC+AGG | 0.638101 | 3.1:-81021045 | None:intergenic |
| ACAAGTGGTGATACAAGGCA+TGG | 0.642676 | 3.1:-81022051 | None:intergenic |
| ATTAGTTGGGAAGTTTCACG+TGG | 0.655561 | 3.1:+81020610 | MS.gene32929:CDS |
| GTCCATCATCAATTAGAACA+AGG | 0.661327 | 3.1:+81020346 | MS.gene32929:CDS |
| TATTGGGAAAGGGAATTCGG+AGG | 0.666017 | 3.1:+81020873 | MS.gene32929:CDS |
| GGTTGAAACGCATCCAACTG+TGG | 0.672708 | 3.1:-81020215 | None:intergenic |
| TCGAATCTGAGAAGGCAGAG+TGG | 0.699575 | 3.1:+81021806 | MS.gene32929:CDS |
| GCAGCAGGAGAACTTACAAG+TGG | 0.699695 | 3.1:-81022066 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AGTTATTCAAAATAATTCTA+TGG | + | chr3.1:81020690-81020709 | MS.gene32929:CDS | 15.0% |
| !! | ATAGATTAAAATTAAGACTA+TGG | - | chr3.1:81020239-81020258 | None:intergenic | 15.0% |
| !!! | CTTATTTTCAAAAATTCTTT+AGG | + | chr3.1:81021315-81021334 | MS.gene32929:intron | 15.0% |
| !! | AAAAATATTGAAATGACCTT+AGG | - | chr3.1:81021399-81021418 | None:intergenic | 20.0% |
| !! | AGAACTTATAAGTATAGTAT+AGG | + | chr3.1:81021242-81021261 | MS.gene32929:intron | 20.0% |
| !! | ATTTCAAAATATGTTTCTTG+TGG | - | chr3.1:81020778-81020797 | None:intergenic | 20.0% |
| !! | TAATATAGACATTATGGTAT+TGG | + | chr3.1:81021969-81021988 | MS.gene32929:CDS | 20.0% |
| !! | TTTCAAAATATGTTTCTTGT+GGG | - | chr3.1:81020777-81020796 | None:intergenic | 20.0% |
| !!! | ATTATGGTATTGGTTAATTT+TGG | + | chr3.1:81021979-81021998 | MS.gene32929:CDS | 20.0% |
| !!! | TAAGGTCATTTCAATATTTT+TGG | + | chr3.1:81021398-81021417 | MS.gene32929:intron | 20.0% |
| ! | ATGTCATAACTAATAACATG+AGG | - | chr3.1:81021275-81021294 | None:intergenic | 25.0% |
| ! | CTTGAAAAACAATAAACTCA+AGG | - | chr3.1:81021125-81021144 | None:intergenic | 25.0% |
| ! | GTACTTTGTAGGTAAATATA+TGG | - | chr3.1:81021710-81021729 | None:intergenic | 25.0% |
| !! | TGATTAGATTTTCTTAATCC+AGG | - | chr3.1:81020670-81020689 | None:intergenic | 25.0% |
| !! | TTGTTTGAAATCGTAATAGA+TGG | + | chr3.1:81022234-81022253 | MS.gene32929:CDS | 25.0% |
| !!! | TAATTTTAATCTATCGTCGT+TGG | + | chr3.1:81020245-81020264 | MS.gene32929:CDS | 25.0% |
| AAATATTGTTCCCATTGTTG+TGG | - | chr3.1:81022179-81022198 | None:intergenic | 30.0% | |
| AGATATCTAAGTGTGATACT+TGG | + | chr3.1:81021762-81021781 | MS.gene32929:intron | 30.0% | |
| AGCAAAGAATTATTCTCCAT+GGG | + | chr3.1:81022108-81022127 | MS.gene32929:CDS | 30.0% | |
| AGCTGCTAATATAGACATTA+TGG | + | chr3.1:81021963-81021982 | MS.gene32929:CDS | 30.0% | |
| CAGAAAGTTAGATTAAATCC+TGG | + | chr3.1:81020649-81020668 | MS.gene32929:CDS | 30.0% | |
| GTGATAAGATGAAGCTTATT+GGG | + | chr3.1:81020857-81020876 | MS.gene32929:CDS | 30.0% | |
| GTTGAAGAAATGAAGGTTAA+TGG | + | chr3.1:81020940-81020959 | MS.gene32929:CDS | 30.0% | |
| TACCTTGTTCTAATTGATGA+TGG | - | chr3.1:81020351-81020370 | None:intergenic | 30.0% | |
| TAGATGATATTGTCTTGAAG+TGG | - | chr3.1:81021508-81021527 | None:intergenic | 30.0% | |
| TAGCAAAGAATTATTCTCCA+TGG | + | chr3.1:81022107-81022126 | MS.gene32929:CDS | 30.0% | |
| TCTATATTAGCAGCTAATGT+TGG | - | chr3.1:81021958-81021977 | None:intergenic | 30.0% | |
| TTTACCTACAAAGTACAACA+TGG | + | chr3.1:81021714-81021733 | MS.gene32929:intron | 30.0% | |
| ! | AATGGTTCTGTTTATCTTGA+TGG | + | chr3.1:81021081-81021100 | MS.gene32929:CDS | 30.0% |
| ! | GAATAGTGTTGAAGAAATGA+AGG | + | chr3.1:81020933-81020952 | MS.gene32929:CDS | 30.0% |
| ! | GATTCTGTTATGTTTTCGTT+GGG | + | chr3.1:81020988-81021007 | MS.gene32929:CDS | 30.0% |
| ! | TGATTCTGTTATGTTTTCGT+TGG | + | chr3.1:81020987-81021006 | MS.gene32929:CDS | 30.0% |
| !! | GTTTAGATTTTGTAGTCTTG+TGG | + | chr3.1:81021420-81021439 | MS.gene32929:intron | 30.0% |
| !! | TTGATTCTCATTGGCTTAAT+AGG | + | chr3.1:81022136-81022155 | MS.gene32929:CDS | 30.0% |
| !!! | AGCATTGGTTTTAACTCAAA+TGG | + | chr3.1:81021063-81021082 | MS.gene32929:CDS | 30.0% |
| AAAACACAGTTTCCTACAAC+AGG | - | chr3.1:81020754-81020773 | None:intergenic | 35.0% | |
| AACTTACAAGTGGTGATACA+AGG | - | chr3.1:81022059-81022078 | None:intergenic | 35.0% | |
| AAGAATTATTCTCCATGGGT+AGG | + | chr3.1:81022112-81022131 | MS.gene32929:CDS | 35.0% | |
| AAGATGAAGCTTATTGGGAA+AGG | + | chr3.1:81020862-81020881 | MS.gene32929:CDS | 35.0% | |
| ACTTGTATTCGAATCTGAGA+AGG | + | chr3.1:81021798-81021817 | MS.gene32929:CDS | 35.0% | |
| AGACTCTTCATCAAAATCCA+TGG | - | chr3.1:81022205-81022224 | None:intergenic | 35.0% | |
| AGATGAAGCTTATTGGGAAA+GGG | + | chr3.1:81020863-81020882 | MS.gene32929:CDS | 35.0% | |
| ATAGGAACTGATAGGGTAAT+TGG | + | chr3.1:81021829-81021848 | MS.gene32929:CDS | 35.0% | |
| CAAACCATGTTGTACTTTGT+AGG | - | chr3.1:81021721-81021740 | None:intergenic | 35.0% | |
| CTGGATTGAAAATCCATCTA+TGG | + | chr3.1:81020438-81020457 | MS.gene32929:CDS | 35.0% | |
| CTTAATAGGACTACAACCAA+AGG | + | chr3.1:81022150-81022169 | MS.gene32929:CDS | 35.0% | |
| GGTGATAAGATGAAGCTTAT+TGG | + | chr3.1:81020856-81020875 | MS.gene32929:CDS | 35.0% | |
| GTCCATCATCAATTAGAACA+AGG | + | chr3.1:81020346-81020365 | MS.gene32929:CDS | 35.0% | |
| TAAGTGTGATACTTGGTTAC+AGG | + | chr3.1:81021769-81021788 | MS.gene32929:intron | 35.0% | |
| TCAAAGAAGGTTACACTGTT+AGG | + | chr3.1:81020535-81020554 | MS.gene32929:CDS | 35.0% | |
| TGGCATGTGATTATGAATTC+TGG | - | chr3.1:81020323-81020342 | None:intergenic | 35.0% | |
| TGGGAACAATATTTCAACCA+TGG | + | chr3.1:81022185-81022204 | MS.gene32929:CDS | 35.0% | |
| ! | ATCTGAAGCAGAGATTAGTT+GGG | + | chr3.1:81020597-81020616 | MS.gene32929:CDS | 35.0% |
| ! | CTGTTTATCTTGATGGTAAG+TGG | + | chr3.1:81021088-81021107 | MS.gene32929:intron | 35.0% |
| ! | GAACAACAAATTTGTTCAGC+TGG | + | chr3.1:81020419-81020438 | MS.gene32929:CDS | 35.0% |
| ! | TTTTCGTTGGGTTTGACAAT+TGG | + | chr3.1:81021000-81021019 | MS.gene32929:CDS | 35.0% |
| !! | ACCTTCTTTGATGATGATGA+TGG | - | chr3.1:81020526-81020545 | None:intergenic | 35.0% |
| !! | CATTGGTTCATGTTACAAGT+GGG | + | chr3.1:81020896-81020915 | MS.gene32929:CDS | 35.0% |
| !! | TCTAATTGATGATGGACACT+TGG | - | chr3.1:81020343-81020362 | None:intergenic | 35.0% |
| !!! | AGAATTTTCTGCTGGTTCAA+CGG | - | chr3.1:81020296-81020315 | None:intergenic | 35.0% |
| !!! | CTGTTGTTTTGAAAGTTCCT+GGG | + | chr3.1:81021028-81021047 | MS.gene32929:CDS | 35.0% |
| !!! | GATTTTGTAGTCTTGTGGAT+AGG | + | chr3.1:81021425-81021444 | MS.gene32929:intron | 35.0% |
| AAGAAAACCTTCTTCTGCCT+TGG | - | chr3.1:81021868-81021887 | None:intergenic | 40.0% | |
| AAGGTTAATGGCAGAGAGAA+TGG | + | chr3.1:81020952-81020971 | MS.gene32929:CDS | 40.0% | |
| ACTGATAGGGTAATTGGTTG+TGG | + | chr3.1:81021835-81021854 | MS.gene32929:CDS | 40.0% | |
| AGAGTGGATAGGAACTGATA+GGG | + | chr3.1:81021822-81021841 | MS.gene32929:CDS | 40.0% | |
| ATGAGAATCAATCCTACCCA+TGG | - | chr3.1:81022127-81022146 | None:intergenic | 40.0% | |
| ATGAGTATGACATGACCATG+TGG | - | chr3.1:81021590-81021609 | None:intergenic | 40.0% | |
| ATTAGTTGGGAAGTTTCACG+TGG | + | chr3.1:81020610-81020629 | MS.gene32929:CDS | 40.0% | |
| ATTTGATCCAAGGCAGAAGA+AGG | + | chr3.1:81021858-81021877 | MS.gene32929:CDS | 40.0% | |
| CCAGGAACTTTCAAAACAAC+AGG | - | chr3.1:81021030-81021049 | None:intergenic | 40.0% | |
| CTGATGCTGTTGAAAATGGA+TGG | + | chr3.1:81020464-81020483 | MS.gene32929:CDS | 40.0% | |
| CTGGTTCAACGGAATTTCTA+CGG | - | chr3.1:81020285-81020304 | None:intergenic | 40.0% | |
| CTGTTTCGCAGTAATGTTTC+TGG | + | chr3.1:81020391-81020410 | MS.gene32929:CDS | 40.0% | |
| GAGTGCTAAATTCTTCTGTC+TGG | - | chr3.1:81021927-81021946 | None:intergenic | 40.0% | |
| GAGTTAAAACCAATGCTACC+AGG | - | chr3.1:81021060-81021079 | None:intergenic | 40.0% | |
| GCAGCTAATGTTGGATACAA+TGG | - | chr3.1:81021949-81021968 | None:intergenic | 40.0% | |
| GCCATCATCATCATCAAAGA+AGG | + | chr3.1:81020522-81020541 | MS.gene32929:CDS | 40.0% | |
| GCGTGACGATGAATTTGAAT+CGG | + | chr3.1:81020816-81020835 | MS.gene32929:CDS | 40.0% | |
| GCTTATACAATCAGAGCCTA+AGG | + | chr3.1:81021380-81021399 | MS.gene32929:intron | 40.0% | |
| GCTTATTGGGAAAGGGAATT+CGG | + | chr3.1:81020870-81020889 | MS.gene32929:CDS | 40.0% | |
| GGCTGTGAAACATTTCATGT+GGG | - | chr3.1:81021557-81021576 | None:intergenic | 40.0% | |
| GTAAACTTGTGCGATCGTTT+GGG | + | chr3.1:81021219-81021238 | MS.gene32929:intron | 40.0% | |
| GTCAGTTTCACCTTGATGTT+GGG | - | chr3.1:81021454-81021473 | None:intergenic | 40.0% | |
| GTCTTGAAGTGGAAGCAAAA+AGG | - | chr3.1:81021497-81021516 | None:intergenic | 40.0% | |
| TCAGTTTCACCTTGATGTTG+GGG | - | chr3.1:81021453-81021472 | None:intergenic | 40.0% | |
| TGAATCGGTAAGAAAGAGTG+TGG | + | chr3.1:81020831-81020850 | MS.gene32929:CDS | 40.0% | |
| TGTCAGTTTCACCTTGATGT+TGG | - | chr3.1:81021455-81021474 | None:intergenic | 40.0% | |
| TTAATGGCAGAGAGAATGGT+GGG | + | chr3.1:81020956-81020975 | MS.gene32929:CDS | 40.0% | |
| TTGGTTGTGGATTTGATCCA+AGG | + | chr3.1:81021848-81021867 | MS.gene32929:CDS | 40.0% | |
| ! | CATCTGAAGCAGAGATTAGT+TGG | + | chr3.1:81020596-81020615 | MS.gene32929:CDS | 40.0% |
| ! | TGGGTAGGATTGATTCTCAT+TGG | + | chr3.1:81022127-81022146 | MS.gene32929:CDS | 40.0% |
| !! | ATGACCATGTGGTTCTAGTA+TGG | - | chr3.1:81021579-81021598 | None:intergenic | 40.0% |
| !! | GCATTGGTTCATGTTACAAG+TGG | + | chr3.1:81020895-81020914 | MS.gene32929:CDS | 40.0% |
| !! | GGATTTTGATGAAGAGTCTG+AGG | + | chr3.1:81022206-81022225 | MS.gene32929:CDS | 40.0% |
| !! | TGACCATGTGGTTCTAGTAT+GGG | - | chr3.1:81021578-81021597 | None:intergenic | 40.0% |
| !!! | CCTGTTGTTTTGAAAGTTCC+TGG | + | chr3.1:81021027-81021046 | MS.gene32929:CDS | 40.0% |
| !!! | CTGGTTCTAGAATTTTCTGC+TGG | - | chr3.1:81020304-81020323 | None:intergenic | 40.0% |
| AAAGTTCCTGGGAGTTATCC+TGG | + | chr3.1:81021039-81021058 | MS.gene32929:CDS | 45.0% | |
| AAATTCATCGTCACGCGAAG+AGG | - | chr3.1:81020812-81020831 | None:intergenic | 45.0% | |
| ACAAGTGGTGATACAAGGCA+TGG | - | chr3.1:81022054-81022073 | None:intergenic | 45.0% | |
| ACCAAAGGAAGCCACAACAA+TGG | + | chr3.1:81022165-81022184 | MS.gene32929:CDS | 45.0% | |
| CAGAGTGGATAGGAACTGAT+AGG | + | chr3.1:81021821-81021840 | MS.gene32929:CDS | 45.0% | |
| CCAAAGGAAGCCACAACAAT+GGG | + | chr3.1:81022166-81022185 | MS.gene32929:CDS | 45.0% | |
| CGTAAACTTGTGCGATCGTT+TGG | + | chr3.1:81021218-81021237 | MS.gene32929:intron | 45.0% | |
| GCAGTTATAGCATCCACAGT+TGG | + | chr3.1:81020202-81020221 | MS.gene32929:CDS | 45.0% | |
| GCTATCATCGTCGTAACCTA+TGG | - | chr3.1:81022091-81022110 | None:intergenic | 45.0% | |
| GCTGCTGATGCTGTTGAAAA+TGG | + | chr3.1:81020460-81020479 | MS.gene32929:CDS | 45.0% | |
| GGGCTGTGAAACATTTCATG+TGG | - | chr3.1:81021558-81021577 | None:intergenic | 45.0% | |
| GGTGATACAAGGCATGGATT+TGG | - | chr3.1:81022048-81022067 | None:intergenic | 45.0% | |
| GGTGTTCTTTGAGCATTTGC+TGG | - | chr3.1:81022027-81022046 | None:intergenic | 45.0% | |
| GTTAATGGCAGAGAGAATGG+TGG | + | chr3.1:81020955-81020974 | MS.gene32929:CDS | 45.0% | |
| TATTGGGAAAGGGAATTCGG+AGG | + | chr3.1:81020873-81020892 | MS.gene32929:CDS | 45.0% | |
| TCGTTGGGTTTGACAATTGG+TGG | + | chr3.1:81021003-81021022 | MS.gene32929:CDS | 45.0% | |
| TCTCTTCCATAATCACCTGC+AGG | - | chr3.1:81020574-81020593 | None:intergenic | 45.0% | |
| ! | TCGGTAAGAAAGAGTGTGGA+AGG | + | chr3.1:81020835-81020854 | MS.gene32929:CDS | 45.0% |
| ACAGCATCAGCAGCCATAGA+TGG | - | chr3.1:81020454-81020473 | None:intergenic | 50.0% | |
| AGAACAGCTTTGCCGTTACC+TGG | + | chr3.1:81020727-81020746 | MS.gene32929:CDS | 50.0% | |
| ATGCTACCAGGATAACTCCC+AGG | - | chr3.1:81021048-81021067 | None:intergenic | 50.0% | |
| CAGCCCATACTAGAACCACA+TGG | + | chr3.1:81021572-81021591 | MS.gene32929:intron | 50.0% | |
| CAGTTTCCTACAACAGGACC+AGG | - | chr3.1:81020748-81020767 | None:intergenic | 50.0% | |
| CCCATTGTTGTGGCTTCCTT+TGG | - | chr3.1:81022169-81022188 | None:intergenic | 50.0% | |
| CCTACAACAGGACCAGGTAA+CGG | - | chr3.1:81020742-81020761 | None:intergenic | 50.0% | |
| GCAGCAGGAGAACTTACAAG+TGG | - | chr3.1:81022069-81022088 | None:intergenic | 50.0% | |
| GGATAGGATCCCCAACATCA+AGG | + | chr3.1:81021441-81021460 | MS.gene32929:intron | 50.0% | |
| GGGAGTTATCCTGGTAGCAT+TGG | + | chr3.1:81021048-81021067 | MS.gene32929:CDS | 50.0% | |
| GGTTGAAACGCATCCAACTG+TGG | - | chr3.1:81020218-81020237 | None:intergenic | 50.0% | |
| GTAAGTTCTCCTGCTGCCAT+AGG | + | chr3.1:81022072-81022091 | MS.gene32929:CDS | 50.0% | |
| TCGAATCTGAGAAGGCAGAG+TGG | + | chr3.1:81021806-81021825 | MS.gene32929:CDS | 50.0% | |
| TCTGAGAAGGCAGAGTGGAT+AGG | + | chr3.1:81021811-81021830 | MS.gene32929:CDS | 50.0% | |
| ! | GAAAGGGAATTCGGAGGCAT+TGG | + | chr3.1:81020879-81020898 | MS.gene32929:CDS | 50.0% |
| CCGTTACCTGGTCCTGTTGT+AGG | + | chr3.1:81020739-81020758 | MS.gene32929:CDS | 55.0% | |
| GCTGCACCTGCAGGTGATTA+TGG | + | chr3.1:81020565-81020584 | MS.gene32929:CDS | 55.0% | |
| TCGTCGTAACCTATGGCAGC+AGG | - | chr3.1:81022084-81022103 | None:intergenic | 55.0% | |
| GGATCATGTGCTGCACCTGC+AGG | + | chr3.1:81020556-81020575 | MS.gene32929:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.1 | gene | 81020187 | 81022287 | 81020187 | ID=MS.gene32929 |
| chr3.1 | mRNA | 81020187 | 81022287 | 81020187 | ID=MS.gene32929.t1;Parent=MS.gene32929 |
| chr3.1 | exon | 81020187 | 81021102 | 81020187 | ID=MS.gene32929.t1.exon1;Parent=MS.gene32929.t1 |
| chr3.1 | CDS | 81020187 | 81021102 | 81020187 | ID=cds.MS.gene32929.t1;Parent=MS.gene32929.t1 |
| chr3.1 | exon | 81021791 | 81022287 | 81021791 | ID=MS.gene32929.t1.exon2;Parent=MS.gene32929.t1 |
| chr3.1 | CDS | 81021791 | 81022287 | 81021791 | ID=cds.MS.gene32929.t1;Parent=MS.gene32929.t1 |
| Gene Sequence |
| Protein sequence |
