Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene32990.t1 | XP_003589013.1 | 98 | 252 | 5 | 0 | 1 | 252 | 1 | 252 | 7.50E-134 | 486.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene32990.t1 | Q9FN15 | 42.4 | 191 | 109 | 1 | 20 | 210 | 51 | 240 | 1.1e-32 | 141.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene32990.t1 | G7IB80 | 98.0 | 252 | 5 | 0 | 1 | 252 | 1 | 252 | 5.4e-134 | 486.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049427 | MS.gene32990 | 0.809424 | 1.91E-50 | -1.69E-46 |
| MS.gene049609 | MS.gene32990 | 0.800035 | 1.74E-48 | -1.69E-46 |
| MS.gene049805 | MS.gene32990 | 0.822418 | 2.39E-53 | -1.69E-46 |
| MS.gene050404 | MS.gene32990 | 0.818324 | 2.08E-52 | -1.69E-46 |
| MS.gene050507 | MS.gene32990 | 0.834231 | 3.38E-56 | -1.69E-46 |
| MS.gene050670 | MS.gene32990 | 0.814445 | 1.54E-51 | -1.69E-46 |
| MS.gene050812 | MS.gene32990 | 0.818126 | 2.31E-52 | -1.69E-46 |
| MS.gene05105 | MS.gene32990 | 0.824527 | 7.69E-54 | -1.69E-46 |
| MS.gene051617 | MS.gene32990 | 0.901822 | 1.82E-78 | -1.69E-46 |
| MS.gene051810 | MS.gene32990 | 0.802712 | 4.92E-49 | -1.69E-46 |
| MS.gene052134 | MS.gene32990 | 0.80503 | 1.62E-49 | -1.69E-46 |
| MS.gene052135 | MS.gene32990 | 0.80495 | 1.69E-49 | -1.69E-46 |
| MS.gene052136 | MS.gene32990 | 0.809597 | 1.75E-50 | -1.69E-46 |
| MS.gene052188 | MS.gene32990 | 0.835608 | 1.52E-56 | -1.69E-46 |
| MS.gene052310 | MS.gene32990 | 0.81375 | 2.18E-51 | -1.69E-46 |
| MS.gene052340 | MS.gene32990 | 0.818897 | 1.54E-52 | -1.69E-46 |
| MS.gene052414 | MS.gene32990 | 0.80523 | 1.48E-49 | -1.69E-46 |
| MS.gene052421 | MS.gene32990 | 0.807798 | 4.24E-50 | -1.69E-46 |
| MS.gene052484 | MS.gene32990 | 0.804324 | 2.28E-49 | -1.69E-46 |
| MS.gene052615 | MS.gene32990 | 0.804109 | 2.53E-49 | -1.69E-46 |
| MS.gene054123 | MS.gene32990 | 0.804847 | 1.77E-49 | -1.69E-46 |
| MS.gene054349 | MS.gene32990 | 0.813537 | 2.43E-51 | -1.69E-46 |
| MS.gene05505 | MS.gene32990 | 0.808991 | 2.36E-50 | -1.69E-46 |
| MS.gene055116 | MS.gene32990 | 0.8092 | 2.13E-50 | -1.69E-46 |
| MS.gene055412 | MS.gene32990 | 0.804938 | 1.70E-49 | -1.69E-46 |
| MS.gene055539 | MS.gene32990 | 0.812521 | 4.07E-51 | -1.69E-46 |
| MS.gene05553 | MS.gene32990 | 0.800008 | 1.76E-48 | -1.69E-46 |
| MS.gene056609 | MS.gene32990 | 0.846063 | 2.75E-59 | -1.69E-46 |
| MS.gene056659 | MS.gene32990 | 0.833877 | 4.14E-56 | -1.69E-46 |
| MS.gene056664 | MS.gene32990 | 0.813727 | 2.21E-51 | -1.69E-46 |
| MS.gene056719 | MS.gene32990 | 0.822563 | 2.22E-53 | -1.69E-46 |
| MS.gene056897 | MS.gene32990 | 0.841023 | 6.11E-58 | -1.69E-46 |
| MS.gene057076 | MS.gene32990 | 0.818329 | 2.07E-52 | -1.69E-46 |
| MS.gene057124 | MS.gene32990 | 0.854949 | 8.76E-62 | -1.69E-46 |
| MS.gene058007 | MS.gene32990 | 0.805817 | 1.11E-49 | -1.69E-46 |
| MS.gene058082 | MS.gene32990 | 0.808594 | 2.87E-50 | -1.69E-46 |
| MS.gene058233 | MS.gene32990 | 0.830114 | 3.52E-55 | -1.69E-46 |
| MS.gene058365 | MS.gene32990 | 0.834112 | 3.62E-56 | -1.69E-46 |
| MS.gene058748 | MS.gene32990 | 0.830292 | 3.19E-55 | -1.69E-46 |
| MS.gene058838 | MS.gene32990 | 0.805157 | 1.53E-49 | -1.69E-46 |
| MS.gene058928 | MS.gene32990 | 0.815337 | 9.73E-52 | -1.69E-46 |
| MS.gene059688 | MS.gene32990 | 0.825509 | 4.51E-54 | -1.69E-46 |
| MS.gene059692 | MS.gene32990 | 0.839831 | 1.25E-57 | -1.69E-46 |
| MS.gene059695 | MS.gene32990 | 0.844496 | 7.29E-59 | -1.69E-46 |
| MS.gene060407 | MS.gene32990 | 0.83158 | 1.54E-55 | -1.69E-46 |
| MS.gene060835 | MS.gene32990 | 0.820121 | 8.11E-53 | -1.69E-46 |
| MS.gene060971 | MS.gene32990 | 0.809241 | 2.09E-50 | -1.69E-46 |
| MS.gene060981 | MS.gene32990 | 0.80929 | 2.04E-50 | -1.69E-46 |
| MS.gene061041 | MS.gene32990 | 0.830609 | 2.67E-55 | -1.69E-46 |
| MS.gene061049 | MS.gene32990 | 0.811922 | 5.49E-51 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene32990.t1 | MTR_1g016360 | 98.016 | 252 | 5 | 0 | 1 | 252 | 1 | 252 | 0.0 | 504 |
| MS.gene32990.t1 | MTR_1g016360 | 96.809 | 188 | 6 | 0 | 1 | 188 | 1 | 188 | 2.45e-132 | 371 |
| MS.gene32990.t1 | MTR_1g016360 | 91.061 | 179 | 16 | 0 | 1 | 179 | 1 | 179 | 3.53e-117 | 333 |
| MS.gene32990.t1 | MTR_5g016100 | 47.205 | 161 | 84 | 1 | 50 | 210 | 66 | 225 | 6.10e-43 | 148 |
| MS.gene32990.t1 | MTR_5g016100 | 47.945 | 146 | 61 | 2 | 92 | 222 | 11 | 156 | 3.59e-34 | 123 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene32990.t1 | AT5G11840 | 61.328 | 256 | 75 | 5 | 13 | 248 | 9 | 260 | 9.09e-104 | 302 |
| MS.gene32990.t1 | AT5G11840 | 64.674 | 184 | 53 | 2 | 13 | 184 | 9 | 192 | 9.70e-81 | 241 |
| MS.gene32990.t1 | AT5G11840 | 64.481 | 183 | 53 | 2 | 13 | 183 | 9 | 191 | 4.26e-80 | 239 |
| MS.gene32990.t1 | AT5G11840 | 60.479 | 167 | 54 | 2 | 13 | 167 | 9 | 175 | 1.04e-66 | 205 |
| MS.gene32990.t1 | AT5G67370 | 41.969 | 193 | 111 | 1 | 18 | 210 | 49 | 240 | 1.13e-42 | 148 |
Find 55 sgRNAs with CRISPR-Local
Find 178 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TAACGACTGGTACTCGTTTA+TGG | 0.126473 | 1.1:+5821934 | None:intergenic |
| GTTGATGGAGGGAATAGTTT+TGG | 0.223696 | 1.1:+5822088 | None:intergenic |
| TGTTGGAGTGAATGGGAAAA+AGG | 0.250745 | 1.1:+5822059 | None:intergenic |
| CTTTGTTCTGTTGCTGTTGT+TGG | 0.293720 | 1.1:+5822021 | None:intergenic |
| TGGCTTGGTTTGGAACTGTT+GGG | 0.311583 | 1.1:-5821808 | MS.gene32990:CDS |
| TGCTGCTTCTAGTGGTGTTT+TGG | 0.320044 | 1.1:-5821753 | MS.gene32990:CDS |
| GGTGAAGACTGCTGAGGTTT+TGG | 0.325730 | 1.1:-5820107 | MS.gene32990:CDS |
| GGGTTACCTGTGGCTTGGTT+TGG | 0.356647 | 1.1:-5821818 | MS.gene32990:CDS |
| AACGACTGGTACTCGTTTAT+GGG | 0.360388 | 1.1:+5821935 | None:intergenic |
| TCTGTTGCTGTTGTTGGTAA+TGG | 0.366769 | 1.1:+5822027 | None:intergenic |
| GTGGCTTGGTTTGGAACTGT+TGG | 0.374589 | 1.1:-5821809 | MS.gene32990:CDS |
| GGTAATGGTGATTGATTTGT+TGG | 0.385707 | 1.1:+5822042 | None:intergenic |
| TTGTTAGGATGTATCTTGGT+TGG | 0.396546 | 1.1:-5821715 | MS.gene32990:CDS |
| ATGTTGTTGAATACGGTTCC+CGG | 0.401820 | 1.1:-5821877 | MS.gene32990:CDS |
| GATTGATTTGTTGGAGTGAA+TGG | 0.424418 | 1.1:+5822051 | None:intergenic |
| TGTTAGGATGTATCTTGGTT+GGG | 0.425759 | 1.1:-5821714 | MS.gene32990:CDS |
| AAAAGCCCACAACGAAAAGC+CGG | 0.429370 | 1.1:+5821858 | None:intergenic |
| GCGGTTGTTAGGATGTATCT+TGG | 0.430246 | 1.1:-5821719 | MS.gene32990:CDS |
| GGCTGCTGTTCTAACGGAAC+AGG | 0.440485 | 1.1:+5821956 | None:intergenic |
| ATCTTGGTTGGGCTTATGTT+GGG | 0.441526 | 1.1:-5821703 | MS.gene32990:CDS |
| TTGGCACGTGATAGACTCTT+GGG | 0.445944 | 1.1:-5820088 | MS.gene32990:CDS |
| CACCAGCAGCCCATGAAAAC+GGG | 0.453557 | 1.1:+5821900 | None:intergenic |
| AGTCGGTCTGGCAGCATGCT+TGG | 0.454960 | 1.1:-5819023 | MS.gene32990:CDS |
| GCTGGTGATGTTGTTGAATA+CGG | 0.456887 | 1.1:-5821884 | MS.gene32990:CDS |
| TTTGGCACGTGATAGACTCT+TGG | 0.457104 | 1.1:-5820089 | MS.gene32990:CDS |
| TATTTAACATCGAGAGAAAC+CGG | 0.458605 | 1.1:-5818962 | MS.gene32990:CDS |
| CTCTGTTTAAGTTCAAGAAA+CGG | 0.462020 | 1.1:-5821989 | MS.gene32990:CDS |
| TCACCAGCAGCCCATGAAAA+CGG | 0.464675 | 1.1:+5821899 | None:intergenic |
| TCCAGGTATTGCTCGAACTC+CGG | 0.467416 | 1.1:+5818943 | None:intergenic |
| TATATTGCAGATGAGGAGAC+AGG | 0.467504 | 1.1:-5820771 | MS.gene32990:intron |
| ATGTACTATTCTTCAAGATC+AGG | 0.468774 | 1.1:+5818866 | None:intergenic |
| TATCTTGGTTGGGCTTATGT+TGG | 0.471423 | 1.1:-5821704 | MS.gene32990:CDS |
| GGCTCACCACAAAATGCATC+TGG | 0.473478 | 1.1:+5818887 | None:intergenic |
| ATTGATTTGTTGGAGTGAAT+GGG | 0.475696 | 1.1:+5822052 | None:intergenic |
| GACAGGGTGGTATGATGGCC+AGG | 0.475845 | 1.1:-5820754 | MS.gene32990:intron |
| TTGTGGGGTTACCTGTGGCT+TGG | 0.484321 | 1.1:-5821823 | MS.gene32990:CDS |
| GAAAATCACTCTAGTCGGTC+TGG | 0.491715 | 1.1:-5819035 | MS.gene32990:CDS |
| ACCGGAGTTCGAGCAATACC+TGG | 0.506149 | 1.1:-5818944 | MS.gene32990:CDS |
| GGCTTGGTTTGGAACTGTTG+GGG | 0.506638 | 1.1:-5821807 | MS.gene32990:CDS |
| GCACAAACAATTCTCTTAGC+AGG | 0.508243 | 1.1:+5821773 | None:intergenic |
| GAGGAGACAGGGTGGTATGA+TGG | 0.516290 | 1.1:-5820759 | MS.gene32990:CDS |
| ATTGTTTGTGCTGCTTCTAG+TGG | 0.521546 | 1.1:-5821761 | MS.gene32990:CDS |
| GATTCATCATTGTAAGCTCC+AGG | 0.524014 | 1.1:+5818926 | None:intergenic |
| AAAGCCCACAACGAAAAGCC+GGG | 0.532515 | 1.1:+5821859 | None:intergenic |
| TTTATGGGCTGCTGTTCTAA+CGG | 0.540735 | 1.1:+5821950 | None:intergenic |
| CTTGCTTGTGGGGTTACCTG+TGG | 0.557353 | 1.1:-5821828 | MS.gene32990:CDS |
| CACAGGTAACCCCACAAGCA+AGG | 0.573824 | 1.1:+5821829 | None:intergenic |
| TTCAAGGTTAAGCCTGTACT+CGG | 0.578638 | 1.1:-5819064 | MS.gene32990:intron |
| GGAACGATGTCGATAACGAC+TGG | 0.595019 | 1.1:+5821921 | None:intergenic |
| AGATTGAAAATCACTCTAGT+CGG | 0.609573 | 1.1:-5819040 | MS.gene32990:CDS |
| ACAGTTCCAAACCAAGCCAC+AGG | 0.624924 | 1.1:+5821812 | None:intergenic |
| ATATTGCAGATGAGGAGACA+GGG | 0.660822 | 1.1:-5820770 | MS.gene32990:intron |
| AGATACATTACATTCAACAG+TGG | 0.729086 | 1.1:+5821664 | None:intergenic |
| TTGCAGATGAGGAGACAGGG+TGG | 0.732719 | 1.1:-5820767 | MS.gene32990:intron |
| GATATGGGTGAAGACTGCTG+AGG | 0.749406 | 1.1:-5820113 | MS.gene32990:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTATATTACATATAAAATCT+TGG | - | chr1.1:5820269-5820288 | MS.gene32990:intron | 10.0% |
| !!! | GCAATAATTTTATAGTTAAA+CGG | - | chr1.1:5820036-5820055 | MS.gene32990:intron | 15.0% |
| !! | AAAAATCTTCCATATAAACA+AGG | - | chr1.1:5819833-5819852 | MS.gene32990:intron | 20.0% |
| !! | AAATATTTCTCTACAGATAT+GGG | - | chr1.1:5820858-5820877 | MS.gene32990:intron | 20.0% |
| !! | ATATCTGTAGAGAAATATTT+AGG | + | chr1.1:5820858-5820877 | None:intergenic | 20.0% |
| !! | ATTTATGTAGATGAAACTAA+CGG | - | chr1.1:5820410-5820429 | MS.gene32990:intron | 20.0% |
| !! | CAAAAACATAAATTTCCATA+AGG | + | chr1.1:5821579-5821598 | None:intergenic | 20.0% |
| !! | CATAAGGTTAAATTTAACAA+AGG | + | chr1.1:5821563-5821582 | None:intergenic | 20.0% |
| !! | CTTTGTTAAATTTAACCTTA+TGG | - | chr1.1:5821561-5821580 | MS.gene32990:intron | 20.0% |
| !! | GATCTTAAAGACTTAATATT+AGG | + | chr1.1:5821384-5821403 | None:intergenic | 20.0% |
| !! | TAAATATTTCTCTACAGATA+TGG | - | chr1.1:5820857-5820876 | MS.gene32990:intron | 20.0% |
| !! | TATCATATACGATTAATGTT+AGG | - | chr1.1:5820064-5820083 | MS.gene32990:intron | 20.0% |
| !! | TTCATCTACATAAATTCATT+GGG | + | chr1.1:5820405-5820424 | None:intergenic | 20.0% |
| !! | TTTCATCTACATAAATTCAT+TGG | + | chr1.1:5820406-5820425 | None:intergenic | 20.0% |
| !!! | ATATTGTTAGTGTTATTCAA+TGG | - | chr1.1:5820142-5820161 | MS.gene32990:intron | 20.0% |
| !!! | GAATATCAACAGATTTTAAA+AGG | + | chr1.1:5821829-5821848 | None:intergenic | 20.0% |
| !!! | TAAATAATTCCTGAATCTTT+TGG | + | chr1.1:5821142-5821161 | None:intergenic | 20.0% |
| !!! | TAATATTAATGTGTCGATTA+TGG | + | chr1.1:5820642-5820661 | None:intergenic | 20.0% |
| !!! | TTGTTTATATGGAAGATTTT+TGG | + | chr1.1:5819834-5819853 | None:intergenic | 20.0% |
| ! | ACTATACAATCCTCAATTAA+TGG | + | chr1.1:5821773-5821792 | None:intergenic | 25.0% |
| ! | ATAAAGAGAAAACAATTACC+TGG | + | chr1.1:5820253-5820272 | None:intergenic | 25.0% |
| ! | TGACATATCACAAAATATAG+TGG | + | chr1.1:5821336-5821355 | None:intergenic | 25.0% |
| ! | TGTATTTACATCTCACTTAA+GGG | + | chr1.1:5819548-5819567 | None:intergenic | 25.0% |
| ! | TTAAGACTATGTAAGTAGTA+GGG | - | chr1.1:5821065-5821084 | MS.gene32990:intron | 25.0% |
| ! | TTATCTATTACTTCCATGTA+TGG | - | chr1.1:5819366-5819385 | MS.gene32990:intron | 25.0% |
| ! | TTCAATTCATCCATTAATTG+AGG | - | chr1.1:5821760-5821779 | MS.gene32990:CDS | 25.0% |
| ! | TTCATATCATTAACGTATCA+TGG | + | chr1.1:5820120-5820139 | None:intergenic | 25.0% |
| ! | TTGTATTTACATCTCACTTA+AGG | + | chr1.1:5819549-5819568 | None:intergenic | 25.0% |
| !! | AAACTCTTTTGTAATGTTCA+AGG | - | chr1.1:5821906-5821925 | MS.gene32990:CDS | 25.0% |
| !! | ACTTGTTTGTGTTTTACTAA+GGG | - | chr1.1:5820778-5820797 | MS.gene32990:intron | 25.0% |
| !! | TACAAGATAATTTTCATCAC+AGG | + | chr1.1:5821607-5821626 | None:intergenic | 25.0% |
| !! | TCTAAAGTCACATATATGAT+TGG | - | chr1.1:5820701-5820720 | MS.gene32990:intron | 25.0% |
| !! | TTTAAGACTATGTAAGTAGT+AGG | - | chr1.1:5821064-5821083 | MS.gene32990:intron | 25.0% |
| !!! | AACTTGTTTGTGTTTTACTA+AGG | - | chr1.1:5820777-5820796 | MS.gene32990:intron | 25.0% |
| ACAAATGTCGTACAAAATAG+AGG | - | chr1.1:5821274-5821293 | MS.gene32990:intron | 30.0% | |
| AGATACATTACATTCAACAG+TGG | + | chr1.1:5819325-5819344 | None:intergenic | 30.0% | |
| AGATTGAAAATCACTCTAGT+CGG | - | chr1.1:5821946-5821965 | MS.gene32990:CDS | 30.0% | |
| AGTGCATAAACATATCAAGA+TGG | + | chr1.1:5821509-5821528 | None:intergenic | 30.0% | |
| ATTTCCATACCAAAAGATTC+AGG | - | chr1.1:5821130-5821149 | MS.gene32990:intron | 30.0% | |
| CAAAATCGAAGATCTTATGT+GGG | - | chr1.1:5819644-5819663 | MS.gene32990:intron | 30.0% | |
| CTCACTTGTAGTAAAACATT+AGG | - | chr1.1:5821449-5821468 | MS.gene32990:intron | 30.0% | |
| GTATTTACATCTCACTTAAG+GGG | + | chr1.1:5819547-5819566 | None:intergenic | 30.0% | |
| GTGTTAAGAAATTTGTGGAA+GGG | - | chr1.1:5820164-5820183 | MS.gene32990:intron | 30.0% | |
| TATTTAACATCGAGAGAAAC+CGG | - | chr1.1:5822024-5822043 | MS.gene32990:CDS | 30.0% | |
| TCCAAAATAAGAGTCAATGT+TGG | + | chr1.1:5819681-5819700 | None:intergenic | 30.0% | |
| TTCTGGATTACTTGTTTACT+TGG | - | chr1.1:5820313-5820332 | MS.gene32990:intron | 30.0% | |
| TTGGTATGGAAATTACTACA+AGG | + | chr1.1:5821123-5821142 | None:intergenic | 30.0% | |
| TTGTGTTGAAATTTCTTCAC+CGG | + | chr1.1:5820360-5820379 | None:intergenic | 30.0% | |
| ! | AAACGACGATTTTGTCAAAT+AGG | + | chr1.1:5821742-5821761 | None:intergenic | 30.0% |
| ! | AATTCCTGAATCTTTTGGTA+TGG | + | chr1.1:5821137-5821156 | None:intergenic | 30.0% |
| ! | ACGATTTTGTCAAATAGGAT+AGG | + | chr1.1:5821737-5821756 | None:intergenic | 30.0% |
| ! | CAATGGTGTTAAGAAATTTG+TGG | - | chr1.1:5820159-5820178 | MS.gene32990:intron | 30.0% |
| ! | CTCTGTTTAAGTTCAAGAAA+CGG | - | chr1.1:5818997-5819016 | MS.gene32990:CDS | 30.0% |
| !! | ATTAATGTGTCGATTATGGA+TGG | + | chr1.1:5820638-5820657 | None:intergenic | 30.0% |
| !! | ATTGATTTGTTGGAGTGAAT+GGG | + | chr1.1:5818937-5818956 | None:intergenic | 30.0% |
| !!! | GCTATTTTGATAAACTATCG+TGG | - | chr1.1:5819455-5819474 | MS.gene32990:intron | 30.0% |
| !!! | TCTCTTCATTTTGTTTTGGA+TGG | - | chr1.1:5820555-5820574 | MS.gene32990:intron | 30.0% |
| AATATGACACCTTAGCATAG+CGG | - | chr1.1:5821298-5821317 | MS.gene32990:intron | 35.0% | |
| ACACTGCAAGTTTCAAATTG+TGG | + | chr1.1:5821655-5821674 | None:intergenic | 35.0% | |
| ACAGTAAATGCTATAGCTCT+TGG | + | chr1.1:5821005-5821024 | None:intergenic | 35.0% | |
| ATAAGTGCTAGTGTTACCAA+TGG | - | chr1.1:5819784-5819803 | MS.gene32990:intron | 35.0% | |
| ATGGAAATTACTACAAGGCA+TGG | + | chr1.1:5821118-5821137 | None:intergenic | 35.0% | |
| CCAAAATCGAAGATCTTATG+TGG | - | chr1.1:5819643-5819662 | MS.gene32990:intron | 35.0% | |
| CTCATCTGCAATATAAAGAG+AGG | + | chr1.1:5820210-5820229 | None:intergenic | 35.0% | |
| CTCTCTTTATATTGCAGATG+AGG | - | chr1.1:5820208-5820227 | MS.gene32990:intron | 35.0% | |
| GGTGTTAAGAAATTTGTGGA+AGG | - | chr1.1:5820163-5820182 | MS.gene32990:intron | 35.0% | |
| GGTTCATCTTTGTATGCTAT+TGG | - | chr1.1:5820290-5820309 | MS.gene32990:intron | 35.0% | |
| TAAACCAAATGACAGGACAA+GGG | + | chr1.1:5820512-5820531 | None:intergenic | 35.0% | |
| TGATTGCATCAATGTGAGAA+TGG | - | chr1.1:5820012-5820031 | MS.gene32990:intron | 35.0% | |
| TGGATTACTTGTTTACTTGG+AGG | - | chr1.1:5820316-5820335 | MS.gene32990:intron | 35.0% | |
| TGTGTTGAAATTTCTTCACC+GGG | + | chr1.1:5820359-5820378 | None:intergenic | 35.0% | |
| TGTTAGGATGTATCTTGGTT+GGG | - | chr1.1:5819272-5819291 | MS.gene32990:intron | 35.0% | |
| TTGTACTAAATAGCTCATCG+TGG | + | chr1.1:5821258-5821277 | None:intergenic | 35.0% | |
| TTGTTAGGATGTATCTTGGT+TGG | - | chr1.1:5819271-5819290 | MS.gene32990:intron | 35.0% | |
| ! | ATTTTCAATCTACCGAGTAC+AGG | + | chr1.1:5821937-5821956 | None:intergenic | 35.0% |
| ! | CCACATAAGATCTTCGATTT+TGG | + | chr1.1:5819646-5819665 | None:intergenic | 35.0% |
| ! | GGAAAAAGGGTTTTTGTTGA+TGG | + | chr1.1:5818916-5818935 | None:intergenic | 35.0% |
| ! | TTGATGGAGGGAATAGTTTT+GGG | + | chr1.1:5818900-5818919 | None:intergenic | 35.0% |
| ! | TTTGAACCAGATGCATTTTG+TGG | - | chr1.1:5822093-5822112 | MS.gene32990:CDS | 35.0% |
| ! | TTTTCTTTTGCCTTGCTTGT+GGG | - | chr1.1:5819147-5819166 | MS.gene32990:intron | 35.0% |
| !! | AAAAGGGTTTTTGTTGATGG+AGG | + | chr1.1:5818913-5818932 | None:intergenic | 35.0% |
| !! | AAAGGGTTTTTGTTGATGGA+GGG | + | chr1.1:5818912-5818931 | None:intergenic | 35.0% |
| !! | ATCTGTCATGTTTTTGCCAT+AGG | + | chr1.1:5819868-5819887 | None:intergenic | 35.0% |
| !! | GAGCTCTCTTCATTTTGTTT+TGG | - | chr1.1:5820551-5820570 | MS.gene32990:intron | 35.0% |
| !! | GATTGATTTGTTGGAGTGAA+TGG | + | chr1.1:5818938-5818957 | None:intergenic | 35.0% |
| !! | GGTAATGGTGATTGATTTGT+TGG | + | chr1.1:5818947-5818966 | None:intergenic | 35.0% |
| !! | TCTTTGTATGCTATTGGTTC+TGG | - | chr1.1:5820296-5820315 | MS.gene32990:intron | 35.0% |
| !! | TGGTTGTGATTTGTTGATAC+TGG | - | chr1.1:5820721-5820740 | MS.gene32990:intron | 35.0% |
| !!! | CTTTATTTTCCACACACTTG+TGG | + | chr1.1:5820445-5820464 | None:intergenic | 35.0% |
| !!! | GCCAACATTGACTCTTATTT+TGG | - | chr1.1:5819677-5819696 | MS.gene32990:intron | 35.0% |
| AACGACTGGTACTCGTTTAT+GGG | + | chr1.1:5819054-5819073 | None:intergenic | 40.0% | |
| ATATTGCAGATGAGGAGACA+GGG | - | chr1.1:5820216-5820235 | MS.gene32990:intron | 40.0% | |
| ATCTTGGTTGGGCTTATGTT+GGG | - | chr1.1:5819283-5819302 | MS.gene32990:intron | 40.0% | |
| ATGTTGTTGAATACGGTTCC+CGG | - | chr1.1:5819109-5819128 | MS.gene32990:intron | 40.0% | |
| ATTACCCTTGTCCTGTCATT+TGG | - | chr1.1:5820505-5820524 | MS.gene32990:intron | 40.0% | |
| CTAAACCAAATGACAGGACA+AGG | + | chr1.1:5820513-5820532 | None:intergenic | 40.0% | |
| GATTCATCATTGTAAGCTCC+AGG | + | chr1.1:5822063-5822082 | None:intergenic | 40.0% | |
| GCACAAACAATTCTCTTAGC+AGG | + | chr1.1:5819216-5819235 | None:intergenic | 40.0% | |
| GTCATTGTTGCAGTCTATAG+CGG | - | chr1.1:5819891-5819910 | MS.gene32990:intron | 40.0% | |
| GTTCAAATTCCGCTATGCTA+AGG | + | chr1.1:5821310-5821329 | None:intergenic | 40.0% | |
| GTTGGAGTGAATGGGAAAAA+GGG | + | chr1.1:5818929-5818948 | None:intergenic | 40.0% | |
| TAACGACTGGTACTCGTTTA+TGG | + | chr1.1:5819055-5819074 | None:intergenic | 40.0% | |
| TATATTGCAGATGAGGAGAC+AGG | - | chr1.1:5820215-5820234 | MS.gene32990:intron | 40.0% | |
| TATCTTGGTTGGGCTTATGT+TGG | - | chr1.1:5819282-5819301 | MS.gene32990:intron | 40.0% | |
| TGTTGGAGTGAATGGGAAAA+AGG | + | chr1.1:5818930-5818949 | None:intergenic | 40.0% | |
| TTCAAGGTTAAGCCTGTACT+CGG | - | chr1.1:5821922-5821941 | MS.gene32990:CDS | 40.0% | |
| TTGCACCTAAACCAAATGAC+AGG | + | chr1.1:5820519-5820538 | None:intergenic | 40.0% | |
| TTGTGCTCTTTCTCCATACA+TGG | + | chr1.1:5819382-5819401 | None:intergenic | 40.0% | |
| ! | CACTTTTACTTGTGTCTCTG+AGG | - | chr1.1:5821690-5821709 | MS.gene32990:CDS | 40.0% |
| ! | CTTGTCCTGTCATTTGGTTT+AGG | - | chr1.1:5820511-5820530 | MS.gene32990:intron | 40.0% |
| ! | CTTTGTTCTGTTGCTGTTGT+TGG | + | chr1.1:5818968-5818987 | None:intergenic | 40.0% |
| ! | CTTTTCTTTTGCCTTGCTTG+TGG | - | chr1.1:5819146-5819165 | MS.gene32990:intron | 40.0% |
| ! | GCTGGTGATGTTGTTGAATA+CGG | - | chr1.1:5819102-5819121 | MS.gene32990:intron | 40.0% |
| ! | GTGTCGACAAATTTCCATCA+TGG | + | chr1.1:5819945-5819964 | None:intergenic | 40.0% |
| ! | GTTCTAAGTTCTCAAAGTCC+CGG | - | chr1.1:5820338-5820357 | MS.gene32990:intron | 40.0% |
| ! | TATTTTCCACACACTTGTGG+CGG | + | chr1.1:5820442-5820461 | None:intergenic | 40.0% |
| ! | TCTGTTGCTGTTGTTGGTAA+TGG | + | chr1.1:5818962-5818981 | None:intergenic | 40.0% |
| ! | TTTATGGGCTGCTGTTCTAA+CGG | + | chr1.1:5819039-5819058 | None:intergenic | 40.0% |
| ! | TTTCTTTTGCCTTGCTTGTG+GGG | - | chr1.1:5819148-5819167 | MS.gene32990:intron | 40.0% |
| !! | ATTGTTTGTGCTGCTTCTAG+TGG | - | chr1.1:5819225-5819244 | MS.gene32990:intron | 40.0% |
| !! | GTTGATGGAGGGAATAGTTT+TGG | + | chr1.1:5818901-5818920 | None:intergenic | 40.0% |
| !! | TGATGGAGGGAATAGTTTTG+GGG | + | chr1.1:5818899-5818918 | None:intergenic | 40.0% |
| !!! | TGTTTTGGCGGTTACTTTTG+CGG | - | chr1.1:5819248-5819267 | MS.gene32990:intron | 40.0% |
| AAAAGCCCACAACGAAAAGC+CGG | + | chr1.1:5819131-5819150 | None:intergenic | 45.0% | |
| AGTGCTAGTGTTACCAATGG+TGG | - | chr1.1:5819787-5819806 | MS.gene32990:intron | 45.0% | |
| CACGGGTCATCATCAAAACA+TGG | + | chr1.1:5821182-5821201 | None:intergenic | 45.0% | |
| GAAAATCACTCTAGTCGGTC+TGG | - | chr1.1:5821951-5821970 | MS.gene32990:CDS | 45.0% | |
| GACAGGACAAGGGTAATATC+TGG | + | chr1.1:5820502-5820521 | None:intergenic | 45.0% | |
| GCGGTTGTTAGGATGTATCT+TGG | - | chr1.1:5819267-5819286 | MS.gene32990:intron | 45.0% | |
| TTGGCACGTGATAGACTCTT+GGG | - | chr1.1:5820898-5820917 | MS.gene32990:intron | 45.0% | |
| TTTGGCACGTGATAGACTCT+TGG | - | chr1.1:5820897-5820916 | MS.gene32990:intron | 45.0% | |
| ! | CTTGTGTCTCTGAGGAATTG+CGG | - | chr1.1:5821698-5821717 | MS.gene32990:CDS | 45.0% |
| ! | GACATCGTTCCCGTTTTCAT+GGG | - | chr1.1:5819077-5819096 | MS.gene32990:intron | 45.0% |
| !! | ATGTTTTTGCCATAGGCCCA+CGG | + | chr1.1:5819861-5819880 | None:intergenic | 45.0% |
| !! | GTGTTACCAATGGTGGATGA+TGG | - | chr1.1:5819794-5819813 | MS.gene32990:intron | 45.0% |
| !! | TGCTGCTTCTAGTGGTGTTT+TGG | - | chr1.1:5819233-5819252 | MS.gene32990:intron | 45.0% |
| !! | TGCTTCTAGTGGTGTTTTGG+CGG | - | chr1.1:5819236-5819255 | MS.gene32990:intron | 45.0% |
| !! | TGGCTTGGTTTGGAACTGTT+GGG | - | chr1.1:5819178-5819197 | MS.gene32990:intron | 45.0% |
| !!! | CGGTTACTTTTGCGGTTGTT+AGG | - | chr1.1:5819256-5819275 | MS.gene32990:intron | 45.0% |
| !!! | TAGTTTTGGGGACATGCGTA+TGG | + | chr1.1:5818887-5818906 | None:intergenic | 45.0% |
| AAAGCCCACAACGAAAAGCC+GGG | + | chr1.1:5819130-5819149 | None:intergenic | 50.0% | |
| ACAGTTCCAAACCAAGCCAC+AGG | + | chr1.1:5819177-5819196 | None:intergenic | 50.0% | |
| CAGAGTCCATCATCCACCAT+TGG | + | chr1.1:5819803-5819822 | None:intergenic | 50.0% | |
| GATATGGGTGAAGACTGCTG+AGG | - | chr1.1:5820873-5820892 | MS.gene32990:intron | 50.0% | |
| GGAACGATGTCGATAACGAC+TGG | + | chr1.1:5819068-5819087 | None:intergenic | 50.0% | |
| GGCTCACCACAAAATGCATC+TGG | + | chr1.1:5822102-5822121 | None:intergenic | 50.0% | |
| TCACCAGCAGCCCATGAAAA+CGG | + | chr1.1:5819090-5819109 | None:intergenic | 50.0% | |
| TCCATCATGGCGTCATGACA+TGG | + | chr1.1:5819932-5819951 | None:intergenic | 50.0% | |
| TGACCCGTGCTGTCAAATAG+CGG | - | chr1.1:5821193-5821212 | MS.gene32990:intron | 50.0% | |
| ! | AGTGCCGCTATTTGACAGCA+CGG | + | chr1.1:5821200-5821219 | None:intergenic | 50.0% |
| ! | CGACATCGTTCCCGTTTTCA+TGG | - | chr1.1:5819076-5819095 | MS.gene32990:intron | 50.0% |
| ! | GGTGAAGACTGCTGAGGTTT+TGG | - | chr1.1:5820879-5820898 | MS.gene32990:intron | 50.0% |
| ! | TCCAGGTATTGCTCGAACTC+CGG | + | chr1.1:5822046-5822065 | None:intergenic | 50.0% |
| !! | CAATGGTGGATGATGGACTC+TGG | - | chr1.1:5819801-5819820 | MS.gene32990:intron | 50.0% |
| !! | CCATATAAACAAGGCGCCGT+GGG | - | chr1.1:5819842-5819861 | MS.gene32990:intron | 50.0% |
| !! | GGCTTGGTTTGGAACTGTTG+GGG | - | chr1.1:5819179-5819198 | MS.gene32990:intron | 50.0% |
| !! | GTGGCTTGGTTTGGAACTGT+TGG | - | chr1.1:5819177-5819196 | MS.gene32990:intron | 50.0% |
| !! | TCCATATAAACAAGGCGCCG+TGG | - | chr1.1:5819841-5819860 | MS.gene32990:intron | 50.0% |
| ACCGGAGTTCGAGCAATACC+TGG | - | chr1.1:5822042-5822061 | MS.gene32990:CDS | 55.0% | |
| CACAGGTAACCCCACAAGCA+AGG | + | chr1.1:5819160-5819179 | None:intergenic | 55.0% | |
| CACCAGCAGCCCATGAAAAC+GGG | + | chr1.1:5819089-5819108 | None:intergenic | 55.0% | |
| CTTGCTTGTGGGGTTACCTG+TGG | - | chr1.1:5819158-5819177 | MS.gene32990:intron | 55.0% | |
| GAGGAGACAGGGTGGTATGA+TGG | - | chr1.1:5820227-5820246 | MS.gene32990:intron | 55.0% | |
| GCCATGTCATGACGCCATGA+TGG | - | chr1.1:5819928-5819947 | MS.gene32990:intron | 55.0% | |
| GGCTGCTGTTCTAACGGAAC+AGG | + | chr1.1:5819033-5819052 | None:intergenic | 55.0% | |
| TTGCAGATGAGGAGACAGGG+TGG | - | chr1.1:5820219-5820238 | MS.gene32990:intron | 55.0% | |
| TTGTGGGGTTACCTGTGGCT+TGG | - | chr1.1:5819163-5819182 | MS.gene32990:intron | 55.0% | |
| ! | GGTTCCCGGCTTTTCGTTGT+GGG | - | chr1.1:5819123-5819142 | MS.gene32990:intron | 55.0% |
| ! | GTGCCGCTATTTGACAGCAC+GGG | + | chr1.1:5821199-5821218 | None:intergenic | 55.0% |
| !! | CCCACGGCGCCTTGTTTATA+TGG | + | chr1.1:5819845-5819864 | None:intergenic | 55.0% |
| !! | GGGTTACCTGTGGCTTGGTT+TGG | - | chr1.1:5819168-5819187 | MS.gene32990:intron | 55.0% |
| !! | TGGTGGATGATGGACTCTGG+AGG | - | chr1.1:5819804-5819823 | MS.gene32990:intron | 55.0% |
| !! | TTCCCGTTTTCATGGGCTGC+TGG | - | chr1.1:5819084-5819103 | MS.gene32990:intron | 55.0% |
| AGTCGGTCTGGCAGCATGCT+TGG | - | chr1.1:5821963-5821982 | MS.gene32990:CDS | 60.0% | |
| GACAGGGTGGTATGATGGCC+AGG | - | chr1.1:5820232-5820251 | MS.gene32990:intron | 60.0% | |
| TGCAGTCCGCCACAAGTGTG+TGG | - | chr1.1:5820433-5820452 | MS.gene32990:intron | 60.0% | |
| ! | CGGTTCCCGGCTTTTCGTTG+TGG | - | chr1.1:5819122-5819141 | MS.gene32990:intron | 60.0% |
| !! | AACAAGGCGCCGTGGGCCTA+TGG | - | chr1.1:5819849-5819868 | MS.gene32990:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.1 | gene | 5818871 | 5822137 | 5818871 | ID=MS.gene32990 |
| chr1.1 | mRNA | 5818871 | 5822137 | 5818871 | ID=MS.gene32990.t1;Parent=MS.gene32990 |
| chr1.1 | exon | 5821675 | 5822137 | 5821675 | ID=MS.gene32990.t1.exon1;Parent=MS.gene32990.t1 |
| chr1.1 | CDS | 5821675 | 5822137 | 5821675 | ID=cds.MS.gene32990.t1;Parent=MS.gene32990.t1 |
| chr1.1 | exon | 5820755 | 5820783 | 5820755 | ID=MS.gene32990.t1.exon2;Parent=MS.gene32990.t1 |
| chr1.1 | CDS | 5820755 | 5820783 | 5820755 | ID=cds.MS.gene32990.t1;Parent=MS.gene32990.t1 |
| chr1.1 | exon | 5820078 | 5820134 | 5820078 | ID=MS.gene32990.t1.exon3;Parent=MS.gene32990.t1 |
| chr1.1 | CDS | 5820078 | 5820134 | 5820078 | ID=cds.MS.gene32990.t1;Parent=MS.gene32990.t1 |
| chr1.1 | exon | 5818871 | 5819080 | 5818871 | ID=MS.gene32990.t1.exon4;Parent=MS.gene32990.t1 |
| chr1.1 | CDS | 5818871 | 5819080 | 5818871 | ID=cds.MS.gene32990.t1;Parent=MS.gene32990.t1 |
| Gene Sequence |
| Protein sequence |
