Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene36281.t1 | XP_024631393.1 | 88.8 | 365 | 30 | 1 | 1 | 354 | 1 | 365 | 1.10E-180 | 642.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene36281.t1 | Q24JK4 | 50.9 | 369 | 140 | 9 | 1 | 348 | 1 | 349 | 5.4e-86 | 319.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene36281.t1 | A0A396JJC2 | 88.8 | 365 | 30 | 1 | 1 | 354 | 1 | 365 | 8.3e-181 | 642.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049341 | MS.gene36281 | 0.81969 | 1.02E-52 | -1.69E-46 |
| MS.gene049825 | MS.gene36281 | 0.803671 | 3.12E-49 | -1.69E-46 |
| MS.gene049979 | MS.gene36281 | 0.806964 | 6.37E-50 | -1.69E-46 |
| MS.gene050020 | MS.gene36281 | 0.80942 | 1.91E-50 | -1.69E-46 |
| MS.gene050277 | MS.gene36281 | 0.800888 | 1.17E-48 | -1.69E-46 |
| MS.gene050303 | MS.gene36281 | 0.824638 | 7.24E-54 | -1.69E-46 |
| MS.gene050438 | MS.gene36281 | 0.831709 | 1.43E-55 | -1.69E-46 |
| MS.gene050719 | MS.gene36281 | 0.844818 | 5.97E-59 | -1.69E-46 |
| MS.gene050721 | MS.gene36281 | 0.843026 | 1.81E-58 | -1.69E-46 |
| MS.gene050724 | MS.gene36281 | 0.848667 | 5.30E-60 | -1.69E-46 |
| MS.gene050807 | MS.gene36281 | 0.81898 | 1.48E-52 | -1.69E-46 |
| MS.gene050815 | MS.gene36281 | 0.822801 | 1.95E-53 | -1.69E-46 |
| MS.gene050824 | MS.gene36281 | 0.804108 | 2.53E-49 | -1.69E-46 |
| MS.gene051247 | MS.gene36281 | 0.804978 | 1.67E-49 | -1.69E-46 |
| MS.gene051328 | MS.gene36281 | 0.805861 | 1.09E-49 | -1.69E-46 |
| MS.gene051388 | MS.gene36281 | 0.80992 | 1.49E-50 | -1.69E-46 |
| MS.gene05157 | MS.gene36281 | 0.800827 | 1.20E-48 | -1.69E-46 |
| MS.gene051700 | MS.gene36281 | 0.808508 | 2.99E-50 | -1.69E-46 |
| MS.gene051719 | MS.gene36281 | 0.816522 | 5.30E-52 | -1.69E-46 |
| MS.gene052012 | MS.gene36281 | 0.800548 | 1.37E-48 | -1.69E-46 |
| MS.gene052020 | MS.gene36281 | 0.830002 | 3.75E-55 | -1.69E-46 |
| MS.gene052133 | MS.gene36281 | 0.803082 | 4.13E-49 | -1.69E-46 |
| MS.gene052286 | MS.gene36281 | 0.802506 | 5.43E-49 | -1.69E-46 |
| MS.gene052613 | MS.gene36281 | 0.809478 | 1.85E-50 | -1.69E-46 |
| MS.gene052665 | MS.gene36281 | 0.827555 | 1.47E-54 | -1.69E-46 |
| MS.gene052863 | MS.gene36281 | 0.80981 | 1.57E-50 | -1.69E-46 |
| MS.gene052896 | MS.gene36281 | 0.817836 | 2.68E-52 | -1.69E-46 |
| MS.gene053221 | MS.gene36281 | 0.816562 | 5.19E-52 | -1.69E-46 |
| MS.gene053630 | MS.gene36281 | 0.808903 | 2.46E-50 | -1.69E-46 |
| MS.gene054472 | MS.gene36281 | 0.807345 | 5.29E-50 | -1.69E-46 |
| MS.gene055363 | MS.gene36281 | 0.800474 | 1.42E-48 | -1.69E-46 |
| MS.gene055465 | MS.gene36281 | 0.810042 | 1.40E-50 | -1.69E-46 |
| MS.gene055466 | MS.gene36281 | 0.824213 | 9.12E-54 | -1.69E-46 |
| MS.gene055468 | MS.gene36281 | 0.820694 | 5.99E-53 | -1.69E-46 |
| MS.gene055512 | MS.gene36281 | 0.814079 | 1.85E-51 | -1.69E-46 |
| MS.gene055580 | MS.gene36281 | -0.801676 | 8.05E-49 | -1.69E-46 |
| MS.gene055608 | MS.gene36281 | 0.801788 | 7.63E-49 | -1.69E-46 |
| MS.gene055778 | MS.gene36281 | 0.811387 | 7.18E-51 | -1.69E-46 |
| MS.gene056553 | MS.gene36281 | 0.802505 | 5.43E-49 | -1.69E-46 |
| MS.gene056760 | MS.gene36281 | 0.808123 | 3.61E-50 | -1.69E-46 |
| MS.gene057057 | MS.gene36281 | 0.803508 | 3.37E-49 | -1.69E-46 |
| MS.gene057060 | MS.gene36281 | 0.806552 | 7.78E-50 | -1.69E-46 |
| MS.gene057140 | MS.gene36281 | 0.811494 | 6.81E-51 | -1.69E-46 |
| MS.gene057260 | MS.gene36281 | 0.801131 | 1.04E-48 | -1.69E-46 |
| MS.gene058084 | MS.gene36281 | 0.816988 | 4.16E-52 | -1.69E-46 |
| MS.gene058168 | MS.gene36281 | 0.809128 | 2.20E-50 | -1.69E-46 |
| MS.gene058636 | MS.gene36281 | 0.832823 | 7.58E-56 | -1.69E-46 |
| MS.gene058798 | MS.gene36281 | 0.806727 | 7.15E-50 | -1.69E-46 |
| MS.gene058851 | MS.gene36281 | 0.827326 | 1.66E-54 | -1.69E-46 |
| MS.gene058906 | MS.gene36281 | 0.84555 | 3.79E-59 | -1.69E-46 |
| MS.gene05954 | MS.gene36281 | 0.807801 | 4.23E-50 | -1.69E-46 |
| MS.gene059937 | MS.gene36281 | 0.823737 | 1.18E-53 | -1.69E-46 |
| MS.gene06001 | MS.gene36281 | 0.81959 | 1.07E-52 | -1.69E-46 |
| MS.gene060429 | MS.gene36281 | 0.815165 | 1.06E-51 | -1.69E-46 |
| MS.gene060586 | MS.gene36281 | 0.803842 | 2.87E-49 | -1.69E-46 |
| MS.gene060587 | MS.gene36281 | 0.819168 | 1.34E-52 | -1.69E-46 |
| MS.gene060619 | MS.gene36281 | 0.816696 | 4.84E-52 | -1.69E-46 |
| MS.gene060907 | MS.gene36281 | 0.806057 | 9.90E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene36281.t1 | MTR_2g102430 | 89.197 | 361 | 28 | 1 | 1 | 350 | 1 | 361 | 0.0 | 657 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene36281.t1 | AT1G80420 | 51.075 | 372 | 135 | 10 | 1 | 348 | 1 | 349 | 2.15e-111 | 328 |
| MS.gene36281.t1 | AT1G80420 | 51.075 | 372 | 135 | 10 | 1 | 348 | 1 | 349 | 2.15e-111 | 328 |
| MS.gene36281.t1 | AT1G80420 | 51.075 | 372 | 135 | 10 | 1 | 348 | 1 | 349 | 2.15e-111 | 328 |
| MS.gene36281.t1 | AT1G80420 | 51.075 | 372 | 135 | 10 | 1 | 348 | 1 | 349 | 2.15e-111 | 328 |
| MS.gene36281.t1 | AT1G80420 | 50.136 | 367 | 134 | 9 | 1 | 348 | 1 | 337 | 4.98e-105 | 312 |
Find 0 sgRNAs with CRISPR-Local
Find 270 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTTATATAATTTGAGAAAAA+TGG | - | 15227:30100-30119 | MS.gene36281:intron | 10.0% |
| !!! | ATTTTTTTAACAAATGAATT+TGG | + | 15227:30410-30429 | None:intergenic | 10.0% |
| !! | CACTTATTTATATATATCTT+TGG | + | 15227:29837-29856 | None:intergenic | 15.0% |
| !! | TAATTGATTAAGTTTATGTT+TGG | - | 15227:27793-27812 | MS.gene36281:CDS | 15.0% |
| !!! | AAAGAAAAAAATGTTGTTTT+TGG | - | 15227:29672-29691 | MS.gene36281:intron | 15.0% |
| !!! | TAGTTTCAATTTTAATTCTA+CGG | + | 15227:28709-28728 | None:intergenic | 15.0% |
| !! | AAATAAGTGCAAAATTGTAA+GGG | - | 15227:29848-29867 | MS.gene36281:intron | 20.0% |
| !! | AATGTACAATAACTTAAACT+AGG | + | 15227:29475-29494 | None:intergenic | 20.0% |
| !! | ACAATCGACAAATAAAATAA+AGG | + | 15227:30136-30155 | None:intergenic | 20.0% |
| !! | AGGTTATTAATTCATTAAAC+TGG | - | 15227:28198-28217 | MS.gene36281:intron | 20.0% |
| !! | ATAAAATCAAAGGTAAAAGT+TGG | - | 15227:30061-30080 | MS.gene36281:CDS | 20.0% |
| !! | ATTTGAATAAAACAATTCAG+TGG | - | 15227:30239-30258 | MS.gene36281:intron | 20.0% |
| !! | TAAATAAGTGCAAAATTGTA+AGG | - | 15227:29847-29866 | MS.gene36281:intron | 20.0% |
| !!! | AAAGGTCTTTAAGTAATTTT+AGG | + | 15227:29775-29794 | None:intergenic | 20.0% |
| !!! | AACTTTTACCTTTGATTTTA+TGG | + | 15227:30062-30081 | None:intergenic | 20.0% |
| !!! | AAGTTTTAAACACACAAAAA+AGG | + | 15227:29793-29812 | None:intergenic | 20.0% |
| !!! | AATATAAGCAGTACTTTTAA+AGG | + | 15227:28475-28494 | None:intergenic | 20.0% |
| !!! | AGTTTCAATTTTAATTCTAC+GGG | + | 15227:28708-28727 | None:intergenic | 20.0% |
| !!! | ATTTAATCATTTTCTTTTCC+TGG | - | 15227:30705-30724 | MS.gene36281:intron | 20.0% |
| !!! | GTATCCTTTATTTTGTTTTT+GGG | - | 15227:29296-29315 | MS.gene36281:intron | 20.0% |
| !!! | GTTTTTGTTGACAAAATATA+TGG | + | 15227:29266-29285 | None:intergenic | 20.0% |
| !!! | TAAAAGTACTGCTTATATTT+TGG | - | 15227:28476-28495 | MS.gene36281:intron | 20.0% |
| !!! | TAATTCATTAAACTGGTTTA+TGG | - | 15227:28205-28224 | MS.gene36281:intron | 20.0% |
| !!! | TATAATCTCATTTTTCTTTG+TGG | - | 15227:28784-28803 | MS.gene36281:CDS | 20.0% |
| !!! | TATTTTACTTGAATGAGAAT+TGG | - | 15227:31168-31187 | MS.gene36281:CDS | 20.0% |
| !!! | TCAATATATTTTGCAGATAA+TGG | + | 15227:29731-29750 | None:intergenic | 20.0% |
| !!! | TGCTGTTTTTTTACTAATAT+TGG | - | 15227:29134-29153 | MS.gene36281:intron | 20.0% |
| !!! | TGTATCCTTTATTTTGTTTT+TGG | - | 15227:29295-29314 | MS.gene36281:intron | 20.0% |
| !!! | TGTTTTTTTACTAATATTGG+TGG | - | 15227:29137-29156 | MS.gene36281:intron | 20.0% |
| !!! | TTGAGAATTTAGTTTTACAT+AGG | + | 15227:30532-30551 | None:intergenic | 20.0% |
| !!! | TTTAATCATTTTCTTTTCCT+GGG | - | 15227:30706-30725 | MS.gene36281:intron | 20.0% |
| ! | AAAACTAAAATCTACATGCA+AGG | + | 15227:30755-30774 | None:intergenic | 25.0% |
| ! | AAAGTTCAAAATGAAAATGC+TGG | - | 15227:27741-27760 | MS.gene36281:CDS | 25.0% |
| ! | AACACCCAAAAACAAAATAA+AGG | + | 15227:29303-29322 | None:intergenic | 25.0% |
| ! | ACAAAATAAAGGATACATCA+TGG | + | 15227:29292-29311 | None:intergenic | 25.0% |
| ! | AGAATAACAAACCATACAAT+AGG | + | 15227:28563-28582 | None:intergenic | 25.0% |
| ! | ATCTATGTCTTATACTTCTT+AGG | - | 15227:28533-28552 | MS.gene36281:intron | 25.0% |
| ! | CAAAGATAAATGAAGAACAT+AGG | - | 15227:31658-31677 | MS.gene36281:intron | 25.0% |
| ! | CATGTAACAAGTTAAAAGAA+AGG | + | 15227:28431-28450 | None:intergenic | 25.0% |
| ! | CTGTTATATCAAGGATTAAA+TGG | - | 15227:31399-31418 | MS.gene36281:intron | 25.0% |
| ! | GAATAACAAACCATACAATA+GGG | + | 15227:28562-28581 | None:intergenic | 25.0% |
| ! | GTTAGAAAAGAAAAGAACAA+CGG | + | 15227:29036-29055 | None:intergenic | 25.0% |
| ! | GTTGTAAAAATTAAGTGCAA+AGG | + | 15227:31071-31090 | None:intergenic | 25.0% |
| ! | TAAGTTTATGTTTGGTATCA+CGG | - | 15227:27801-27820 | MS.gene36281:CDS | 25.0% |
| ! | TGTGTAAAGCCAAATATAAA+TGG | + | 15227:31327-31346 | None:intergenic | 25.0% |
| ! | TGTTATATACGAAATGATTG+AGG | + | 15227:29519-29538 | None:intergenic | 25.0% |
| ! | TTAAAGTAAGAATACCAAGA+TGG | + | 15227:31365-31384 | None:intergenic | 25.0% |
| ! | TTAAATTTAACCAGGACATT+GGG | - | 15227:31457-31476 | MS.gene36281:intron | 25.0% |
| ! | TTGTACAGTCCATTTATATT+TGG | - | 15227:31315-31334 | MS.gene36281:intron | 25.0% |
| ! | TTGTATGCTAGTAAATTGAT+AGG | - | 15227:29448-29467 | MS.gene36281:intron | 25.0% |
| !! | AAATTAGGGATATTTTGTCT+TGG | - | 15227:28959-28978 | MS.gene36281:intron | 25.0% |
| !! | ACTTAATTTTTACAACAGGA+TGG | - | 15227:31075-31094 | MS.gene36281:CDS | 25.0% |
| !! | AGCATTTTCATTTTGAACTT+TGG | + | 15227:27742-27761 | None:intergenic | 25.0% |
| !! | CTTACTTTAAGTTTCAATGT+GGG | - | 15227:31375-31394 | MS.gene36281:intron | 25.0% |
| !! | TATATCTTTGGTGATAAAGA+TGG | + | 15227:29825-29844 | None:intergenic | 25.0% |
| !! | TCTTACTTTAAGTTTCAATG+TGG | - | 15227:31374-31393 | MS.gene36281:intron | 25.0% |
| !! | TTACTTTAAGTTTCAATGTG+GGG | - | 15227:31376-31395 | MS.gene36281:intron | 25.0% |
| !! | TTCTAACTTCATTTTGTTCA+AGG | - | 15227:30493-30512 | MS.gene36281:intron | 25.0% |
| !! | TTGCACTTAATTTTTACAAC+AGG | - | 15227:31071-31090 | MS.gene36281:CDS | 25.0% |
| !! | TTGTAGCTTTTACAAAATCA+CGG | + | 15227:27925-27944 | None:intergenic | 25.0% |
| !! | TTGTCTTGTTAAATTTAACC+AGG | - | 15227:31449-31468 | MS.gene36281:intron | 25.0% |
| !!! | GTCATTTTATTAATGTCTCA+TGG | - | 15227:28621-28640 | MS.gene36281:intron | 25.0% |
| !!! | TCTTTTCTCTCTTATTTTTC+TGG | - | 15227:29630-29649 | MS.gene36281:intron | 25.0% |
| !!! | TTATTTTGTTTTTGGGTGTT+AGG | - | 15227:29303-29322 | MS.gene36281:intron | 25.0% |
| !!! | TTTAACTTGTTACATGTGAA+TGG | - | 15227:28435-28454 | MS.gene36281:intron | 25.0% |
| AAAATTAAGTGCAAAGGTTC+TGG | + | 15227:31065-31084 | None:intergenic | 30.0% | |
| AATACATTCCCAAGAAAGAT+AGG | + | 15227:30899-30918 | None:intergenic | 30.0% | |
| ATAACAAAAATAGCTGCAGA+AGG | - | 15227:30580-30599 | MS.gene36281:intron | 30.0% | |
| ATATCTTCCTTTGACATTGA+AGG | + | 15227:31561-31580 | None:intergenic | 30.0% | |
| ATCAGACTAATAATAGATGC+AGG | - | 15227:30811-30830 | MS.gene36281:intron | 30.0% | |
| ATGACTTCAAAAGAAGATGA+TGG | - | 15227:27636-27655 | MS.gene36281:CDS | 30.0% | |
| ATGAGAATTGGCAAATCATT+TGG | - | 15227:31180-31199 | MS.gene36281:intron | 30.0% | |
| CAATAAACCTTCAATGTCAA+AGG | - | 15227:31551-31570 | MS.gene36281:intron | 30.0% | |
| GAATAAAACAATTCAGTGGT+TGG | - | 15227:30243-30262 | MS.gene36281:intron | 30.0% | |
| GACATTGAAGGATATCTTAA+TGG | + | 15227:31236-31255 | None:intergenic | 30.0% | |
| GACTACTTCCATAAAATCAA+AGG | - | 15227:30051-30070 | MS.gene36281:CDS | 30.0% | |
| GGAAAAAACCTTTGATACAA+TGG | + | 15227:28410-28429 | None:intergenic | 30.0% | |
| GGAAATATTAGATGTGAAAC+TGG | + | 15227:29945-29964 | None:intergenic | 30.0% | |
| GTATAAGACATAGATTCTTG+AGG | + | 15227:28528-28547 | None:intergenic | 30.0% | |
| GTCTGGATTATGTAACAAAT+AGG | + | 15227:29112-29131 | None:intergenic | 30.0% | |
| GTTAAATTTAACCAGGACAT+TGG | - | 15227:31456-31475 | MS.gene36281:intron | 30.0% | |
| GTTTCTTATTAGTGCATGTT+TGG | + | 15227:28127-28146 | None:intergenic | 30.0% | |
| TAACAAAAATAGCTGCAGAA+GGG | - | 15227:30581-30600 | MS.gene36281:intron | 30.0% | |
| TATAATTAGTCGGCATCATT+AGG | + | 15227:31122-31141 | None:intergenic | 30.0% | |
| TCAGACTAATAATAGATGCA+GGG | - | 15227:30812-30831 | MS.gene36281:intron | 30.0% | |
| TTCCTCAATGAAGGAAATTA+GGG | - | 15227:28945-28964 | MS.gene36281:intron | 30.0% | |
| TTTACGAGGAAGAACTAAAT+AGG | - | 15227:31610-31629 | MS.gene36281:intron | 30.0% | |
| TTTCCTCAATGAAGGAAATT+AGG | - | 15227:28944-28963 | MS.gene36281:intron | 30.0% | |
| ! | AAACTGATTGTGACTTGTAT+TGG | - | 15227:30668-30687 | MS.gene36281:intron | 30.0% |
| ! | AATGATGCCGACTAATTATA+AGG | - | 15227:31122-31141 | MS.gene36281:CDS | 30.0% |
| ! | AATGTTTCTGTTCATTCTAG+AGG | - | 15227:30311-30330 | MS.gene36281:intron | 30.0% |
| ! | AGACATTAAGTTTTTGCTTG+AGG | - | 15227:28991-29010 | MS.gene36281:intron | 30.0% |
| ! | AGAGATTAGTTGAGACATAA+TGG | - | 15227:28916-28935 | MS.gene36281:intron | 30.0% |
| ! | AGGATAAAGTCTTATATGCA+AGG | + | 15227:31776-31795 | None:intergenic | 30.0% |
| ! | ATTGTTTGCTACATATTCCA+GGG | - | 15227:30151-30170 | MS.gene36281:intron | 30.0% |
| ! | CTGTACCTTTTACAAAATCA+CGG | + | 15227:27980-27999 | None:intergenic | 30.0% |
| ! | TTAAGTTTTTGCTTGAGGAA+AGG | - | 15227:28996-29015 | MS.gene36281:intron | 30.0% |
| ! | TTCTGGAGAAAACTATGTTA+GGG | + | 15227:31048-31067 | None:intergenic | 30.0% |
| ! | TTTTTCCTCAAGAGAACATA+TGG | + | 15227:30629-30648 | None:intergenic | 30.0% |
| !! | GTACTGCTTATATTTTGGAA+AGG | - | 15227:28481-28500 | MS.gene36281:intron | 30.0% |
| !! | GTTTGCATTGTTGTTTAATG+AGG | - | 15227:28178-28197 | MS.gene36281:intron | 30.0% |
| !! | TATTTTGGAAAGGATAGAAG+TGG | - | 15227:28491-28510 | MS.gene36281:intron | 30.0% |
| !! | TGATAAATGCTTTAGAAGCA+AGG | - | 15227:30459-30478 | MS.gene36281:intron | 30.0% |
| !! | TGCTTCTAAAGCATTTATCA+CGG | + | 15227:30459-30478 | None:intergenic | 30.0% |
| !! | TTTGTTATTCTCACTACTTG+TGG | - | 15227:28572-28591 | MS.gene36281:intron | 30.0% |
| !!! | ACCACTTTTTAGATTTTGGT+GGG | - | 15227:29198-29217 | MS.gene36281:CDS | 30.0% |
| !!! | GCTATTTTTGTTATCTCACT+TGG | + | 15227:30574-30593 | None:intergenic | 30.0% |
| !!! | GCTTACCACTTTTTAGATTT+TGG | - | 15227:29194-29213 | MS.gene36281:CDS | 30.0% |
| !!! | TACCACTTTTTAGATTTTGG+TGG | - | 15227:29197-29216 | MS.gene36281:CDS | 30.0% |
| !!! | TAGTAACGTTACACTGATTT+TGG | - | 15227:29228-29247 | MS.gene36281:CDS | 30.0% |
| AAGCAGCTTTCGAAAAATCA+CGG | + | 15227:27854-27873 | None:intergenic | 35.0% | |
| ACTCACGCATAAATTTCATG+AGG | + | 15227:29966-29985 | None:intergenic | 35.0% | |
| AGAAGCCAATTAAGATTGCA+TGG | - | 15227:29556-29575 | MS.gene36281:intron | 35.0% | |
| AGATCACATGAAGTCAATGA+AGG | - | 15227:29415-29434 | MS.gene36281:intron | 35.0% | |
| AGCAATTTGCCTATCTTTCT+TGG | - | 15227:30887-30906 | MS.gene36281:intron | 35.0% | |
| AGTAAAAAAACAGCATCGTC+TGG | + | 15227:29129-29148 | None:intergenic | 35.0% | |
| ATAGTTACCTTATGCATGCT+GGG | - | 15227:29371-29390 | MS.gene36281:CDS | 35.0% | |
| ATCCAAGTAGTAAGCAATAC+TGG | + | 15227:30985-31004 | None:intergenic | 35.0% | |
| ATCCCTAATTTCCTTCATTG+AGG | + | 15227:28950-28969 | None:intergenic | 35.0% | |
| ATGTTCTCTTGAGGAAAAAC+AGG | - | 15227:30630-30649 | MS.gene36281:intron | 35.0% | |
| CTTGCAAAATTGGATGTTGT+GGG | - | 15227:31525-31544 | MS.gene36281:intron | 35.0% | |
| GAAGAACATAGGAGCAAAAA+TGG | - | 15227:31669-31688 | MS.gene36281:intron | 35.0% | |
| GCAATTTGCCTATCTTTCTT+GGG | - | 15227:30888-30907 | MS.gene36281:intron | 35.0% | |
| GTGAGAAATCCAGTGAAATT+GGG | - | 15227:27700-27719 | MS.gene36281:CDS | 35.0% | |
| GTTGGAAAGTCAAGAAGAAA+AGG | - | 15227:30261-30280 | MS.gene36281:intron | 35.0% | |
| TAAAAGCTACAATGCCAAAG+TGG | - | 15227:27933-27952 | MS.gene36281:intron | 35.0% | |
| TAAGCTTTCAGAACTTGCAT+AGG | - | 15227:30347-30366 | MS.gene36281:intron | 35.0% | |
| TCCAGTATAGCTATATACTC+AGG | + | 15227:31148-31167 | None:intergenic | 35.0% | |
| TCCCACCAAAATCTAAAAAG+TGG | + | 15227:29202-29221 | None:intergenic | 35.0% | |
| TCTTAGGAATCCCTATTGTA+TGG | - | 15227:28549-28568 | MS.gene36281:intron | 35.0% | |
| TGATGATACAATCGAGATGA+CGG | - | 15227:31737-31756 | MS.gene36281:CDS | 35.0% | |
| TGTTAGGGACAAAAAAAGCT+AGG | + | 15227:31033-31052 | None:intergenic | 35.0% | |
| TTCTGACTTCAACAAGCTTA+TGG | - | 15227:27770-27789 | MS.gene36281:CDS | 35.0% | |
| TTGTGGAACCATTGTATCAA+AGG | - | 15227:28399-28418 | MS.gene36281:intron | 35.0% | |
| ! | AAACCACAAAAGCATGTTGA+AGG | - | 15227:30013-30032 | MS.gene36281:CDS | 35.0% |
| ! | AAGTAGCAGTTGTGTGTTTT+TGG | - | 15227:28151-28170 | MS.gene36281:intron | 35.0% |
| ! | ACGGAGCTTTTGTAAAATCA+GGG | - | 15227:28066-28085 | MS.gene36281:intron | 35.0% |
| ! | ACTCAGGCCTTATAATTAGT+CGG | + | 15227:31132-31151 | None:intergenic | 35.0% |
| ! | AGTAGCAGTTGTGTGTTTTT+GGG | - | 15227:28152-28171 | MS.gene36281:intron | 35.0% |
| ! | ATCTAAGATGCAAGTCACAA+AGG | + | 15227:29591-29610 | None:intergenic | 35.0% |
| ! | CATTAAACTGGTTTATGGAC+AGG | - | 15227:28210-28229 | MS.gene36281:intron | 35.0% |
| ! | GAACTCTAATTGCACTCTTT+TGG | - | 15227:28330-28349 | MS.gene36281:intron | 35.0% |
| ! | GATTGTTTGCTACATATTCC+AGG | - | 15227:30150-30169 | MS.gene36281:intron | 35.0% |
| ! | TAGCTTTTACAAAATCACGG+TGG | + | 15227:27922-27941 | None:intergenic | 35.0% |
| ! | TATTAGCTGGTTCAAGTTTG+AGG | + | 15227:28736-28755 | None:intergenic | 35.0% |
| ! | TCAAAAGAAGATGATGGTCA+CGG | - | 15227:27642-27661 | MS.gene36281:CDS | 35.0% |
| ! | TGGTTTTCTTTCCTCAATGA+AGG | - | 15227:28936-28955 | MS.gene36281:intron | 35.0% |
| ! | TGTCACCGTGATTTTGTAAA+AGG | - | 15227:27972-27991 | MS.gene36281:intron | 35.0% |
| ! | TTGAACTTTGGTCTTCTTGT+TGG | + | 15227:27730-27749 | None:intergenic | 35.0% |
| ! | TTTGTTATCTCACTTGGATC+TGG | + | 15227:30568-30587 | None:intergenic | 35.0% |
| !! | AACATGCTTTTGTGGTTTGT+GGG | + | 15227:30011-30030 | None:intergenic | 35.0% |
| !! | GTTCTGGAGAAAACTATGTT+AGG | + | 15227:31049-31068 | None:intergenic | 35.0% |
| !! | TAATAGCCAAGAAGGTACTA+GGG | - | 15227:28751-28770 | MS.gene36281:intron | 35.0% |
| !! | TTTTGGAAAGAGACCAACTT+TGG | - | 15227:27668-27687 | MS.gene36281:CDS | 35.0% |
| !!! | TCTTTTGAAGTCATCCATGA+TGG | + | 15227:27630-27649 | None:intergenic | 35.0% |
| !!! | TTGTTTTTGGGTGTTAGGAT+TGG | - | 15227:29308-29327 | MS.gene36281:intron | 35.0% |
| AAAGTGGCTATGCGAAATCA+CGG | - | 15227:27949-27968 | MS.gene36281:intron | 40.0% | |
| AAGAGACCAACTTTGGATGA+AGG | - | 15227:27675-27694 | MS.gene36281:CDS | 40.0% | |
| AAGCTAGGATGGCAATGATT+AGG | + | 15227:31018-31037 | None:intergenic | 40.0% | |
| AATGTGGGGCTGTTATATCA+AGG | - | 15227:31390-31409 | MS.gene36281:intron | 40.0% | |
| ACAAATGCTGCATCTTCTTC+TGG | - | 15227:31696-31715 | MS.gene36281:CDS | 40.0% | |
| AGATATCCACAAACTAGCAC+TGG | - | 15227:31575-31594 | MS.gene36281:intron | 40.0% | |
| AGATGCCATATGTTCTCTTG+AGG | - | 15227:30621-30640 | MS.gene36281:intron | 40.0% | |
| AGCTTCAACTTGTCGAAACT+TGG | + | 15227:28377-28396 | None:intergenic | 40.0% | |
| AGGGACAAAAAAAGCTAGGA+TGG | + | 15227:31029-31048 | None:intergenic | 40.0% | |
| ATGGAAGTAGTCTCCTTTGA+AGG | + | 15227:30043-30062 | None:intergenic | 40.0% | |
| CAATTTCAACGAGTTTCCTC+TGG | + | 15227:29351-29370 | None:intergenic | 40.0% | |
| CACCAGTATTGCTTACTACT+TGG | - | 15227:30980-30999 | MS.gene36281:intron | 40.0% | |
| CAGCTCCATGCAATCTTAAT+TGG | + | 15227:29564-29583 | None:intergenic | 40.0% | |
| CCAATTGTCAACGACATTGA+AGG | + | 15227:31248-31267 | None:intergenic | 40.0% | |
| CCTTCAATGTCGTTGACAAT+TGG | - | 15227:31245-31264 | MS.gene36281:intron | 40.0% | |
| GAAAAGACATTGACGATCCT+AGG | - | 15227:30173-30192 | MS.gene36281:intron | 40.0% | |
| GATAGTTACCTTATGCATGC+TGG | - | 15227:29370-29389 | MS.gene36281:CDS | 40.0% | |
| GCCTGAGTATATAGCTATAC+TGG | - | 15227:31144-31163 | MS.gene36281:CDS | 40.0% | |
| GCTTCAACTTGTCGAAACTT+GGG | + | 15227:28376-28395 | None:intergenic | 40.0% | |
| GCTTGCAAAATTGGATGTTG+TGG | - | 15227:31524-31543 | MS.gene36281:intron | 40.0% | |
| GGTGAGAAATCCAGTGAAAT+TGG | - | 15227:27699-27718 | MS.gene36281:CDS | 40.0% | |
| GTAAGAATACCAAGATGGCA+CGG | + | 15227:31360-31379 | None:intergenic | 40.0% | |
| TAATCCAAGCCTTTCACTGA+GGG | - | 15227:29082-29101 | MS.gene36281:intron | 40.0% | |
| TGTCATTCAGTGTGATGACT+CGG | + | 15227:31206-31225 | None:intergenic | 40.0% | |
| TGTTGAGGAGCTTGCAAAAT+TGG | - | 15227:31515-31534 | MS.gene36281:intron | 40.0% | |
| TTACTTATATTGCCACTCCC+AGG | + | 15227:30726-30745 | None:intergenic | 40.0% | |
| TTAGTGCGTGTTTGGTATCA+TGG | - | 15227:27872-27891 | MS.gene36281:CDS | 40.0% | |
| TTGGAAAGGATAGAAGTGGA+AGG | - | 15227:28495-28514 | MS.gene36281:intron | 40.0% | |
| TTTACAAAAGCTCCGTGCAT+TGG | + | 15227:28062-28081 | None:intergenic | 40.0% | |
| ! | AAACTGGTTTATGGACAGGA+AGG | - | 15227:28214-28233 | MS.gene36281:intron | 40.0% |
| ! | AGGTGTAGTTTTTGTGCTGT+CGG | - | 15227:28234-28253 | MS.gene36281:intron | 40.0% |
| ! | ATTCTTACCTCGAGTTGTTG+AGG | - | 15227:31500-31519 | MS.gene36281:intron | 40.0% |
| ! | CAACATGCTTTTGTGGTTTG+TGG | + | 15227:30012-30031 | None:intergenic | 40.0% |
| ! | CACGGAGCTTTTGTAAAATC+AGG | - | 15227:28065-28084 | MS.gene36281:intron | 40.0% |
| ! | GAGCTTTTGTAAAATCAGGG+TGG | - | 15227:28069-28088 | MS.gene36281:intron | 40.0% |
| ! | TAGCGTCAATTACTGACTGT+AGG | - | 15227:28858-28877 | MS.gene36281:intron | 40.0% |
| ! | TCATTTTCTTTTCCTGGGAG+TGG | - | 15227:30711-30730 | MS.gene36281:intron | 40.0% |
| ! | TCTCCTTCAACATGCTTTTG+TGG | + | 15227:30019-30038 | None:intergenic | 40.0% |
| ! | TGCTGTAGTGTCTTAGTTTG+CGG | - | 15227:28885-28904 | MS.gene36281:intron | 40.0% |
| ! | TTGAAGTCATCCATGATGGA+AGG | + | 15227:27626-27645 | None:intergenic | 40.0% |
| !! | ACATGCTTTTGTGGTTTGTG+GGG | + | 15227:30010-30029 | None:intergenic | 40.0% |
| !! | CTAATAGCCAAGAAGGTACT+AGG | - | 15227:28750-28769 | MS.gene36281:intron | 40.0% |
| !! | GATGATGGTCACGGAAATTT+TGG | - | 15227:27651-27670 | MS.gene36281:CDS | 40.0% |
| !! | TGTCGAAACTTGGGAGTATT+TGG | + | 15227:28367-28386 | None:intergenic | 40.0% |
| !!! | TGTTTTTGGAGCAGAATCAC+TGG | - | 15227:29686-29705 | MS.gene36281:intron | 40.0% |
| AAAGCTGCTTAGTGCGTGTT+TGG | - | 15227:27864-27883 | MS.gene36281:CDS | 45.0% | |
| AATCCAAGCCTTTCACTGAG+GGG | - | 15227:29083-29102 | MS.gene36281:intron | 45.0% | |
| AATGGGAGCAGAGTATAAGC+AGG | - | 15227:28303-28322 | MS.gene36281:intron | 45.0% | |
| ACGGTGGCTCAATGTGATTA+TGG | + | 15227:27835-27854 | None:intergenic | 45.0% | |
| AGACCAACTTTGGATGAAGG+TGG | - | 15227:27678-27697 | MS.gene36281:CDS | 45.0% | |
| ATAGGATTCCCCTCAGTGAA+AGG | + | 15227:29094-29113 | None:intergenic | 45.0% | |
| ATGGTTTCCCAGCATGCATA+AGG | + | 15227:29381-29400 | None:intergenic | 45.0% | |
| ATTCTCACTACTTGTGGCGT+GGG | - | 15227:28578-28597 | MS.gene36281:intron | 45.0% | |
| CAGCTTTCGAAAAATCACGG+TGG | + | 15227:27851-27870 | None:intergenic | 45.0% | |
| CCAAGAGAAACCTTCCATCA+TGG | - | 15227:27613-27632 | MS.gene36281:CDS | 45.0% | |
| CTAATCCAAGCCTTTCACTG+AGG | - | 15227:29081-29100 | MS.gene36281:intron | 45.0% | |
| GAACCAGCTAATAGCCAAGA+AGG | - | 15227:28743-28762 | MS.gene36281:intron | 45.0% | |
| GTACCTTCTTGGCTATTAGC+TGG | + | 15227:28749-28768 | None:intergenic | 45.0% | |
| GTGATTTCGCATAGCCACTT+TGG | + | 15227:27950-27969 | None:intergenic | 45.0% | |
| GTTGGAAGACCCAATTTCAC+TGG | + | 15227:27712-27731 | None:intergenic | 45.0% | |
| TATTCTCACTACTTGTGGCG+TGG | - | 15227:28577-28596 | MS.gene36281:intron | 45.0% | |
| TCACAGGTGACACATCTTAG+AGG | + | 15227:31796-31815 | None:intergenic | 45.0% | |
| TCACCACCTTCATCCAAAGT+TGG | + | 15227:27684-27703 | None:intergenic | 45.0% | |
| TGTAAAATCAGGGTGGTTCG+CGG | - | 15227:28076-28095 | MS.gene36281:intron | 45.0% | |
| TGTTGAAGGAGAGCCTTCAA+AGG | - | 15227:30027-30046 | MS.gene36281:CDS | 45.0% | |
| TTATGCATGCTGGGAAACCA+TGG | - | 15227:29380-29399 | MS.gene36281:CDS | 45.0% | |
| ! | CCATGATGGAAGGTTTCTCT+TGG | + | 15227:27616-27635 | None:intergenic | 45.0% |
| ! | CGACAAGTTGAAGCTGATTG+TGG | - | 15227:28382-28401 | MS.gene36281:intron | 45.0% |
| ! | GAAGGCTCAAAGCATTTCCT+AGG | + | 15227:30193-30212 | None:intergenic | 45.0% |
| ! | GATCGTCAATGTCTTTTCCC+TGG | + | 15227:30171-30190 | None:intergenic | 45.0% |
| ! | GGTGTAGTTTTTGTGCTGTC+GGG | - | 15227:28235-28254 | MS.gene36281:intron | 45.0% |
| !! | AGCCTTCTGAAGTGAAGAAG+TGG | - | 15227:30206-30225 | MS.gene36281:intron | 45.0% |
| !! | GCCTTCTGAAGTGAAGAAGT+GGG | - | 15227:30207-30226 | MS.gene36281:intron | 45.0% |
| !! | TGTAGTGTCTTAGTTTGCGG+TGG | - | 15227:28888-28907 | MS.gene36281:intron | 45.0% |
| !!! | ATTTTTCAAATATTATTTAT+TGG | - | 15227:29165-29184 | MS.gene36281:CDS | 5.0% |
| AGGTCGCGTGCTATGGAAAT+GGG | - | 15227:28286-28305 | MS.gene36281:intron | 50.0% | |
| ATTCCCCTCAGTGAAAGGCT+TGG | + | 15227:29089-29108 | None:intergenic | 50.0% | |
| CAGTTACTCTCCCAATGTCC+TGG | + | 15227:31470-31489 | None:intergenic | 50.0% | |
| CCCACCATGATACCAATGCA+CGG | - | 15227:28047-28066 | MS.gene36281:intron | 50.0% | |
| CTCACTTGGATCTGGCTGAA+AGG | + | 15227:30560-30579 | None:intergenic | 50.0% | |
| GAGATGCCCTAGTACCTTCT+TGG | + | 15227:28760-28779 | None:intergenic | 50.0% | |
| GAGCAGAGTATAAGCAGGAC+TGG | - | 15227:28308-28327 | MS.gene36281:intron | 50.0% | |
| GAGGTTGGCAAACATGCATG+TGG | + | 15227:29893-29912 | None:intergenic | 50.0% | |
| GATCTACCTCCTTTACGCCA+TGG | + | 15227:29400-29419 | None:intergenic | 50.0% | |
| GCCCACTTCTTCACTTCAGA+AGG | + | 15227:30211-30230 | None:intergenic | 50.0% | |
| GGACATTGGGAGAGTAACTG+AGG | - | 15227:31470-31489 | MS.gene36281:intron | 50.0% | |
| GTCTGAATTCCGTGCCATCT+TGG | - | 15227:31348-31367 | MS.gene36281:intron | 50.0% | |
| GTGAAACTGGACCGAGACAA+CGG | + | 15227:29932-29951 | None:intergenic | 50.0% | |
| TTGGGAGAGTAACTGAGGAC+TGG | - | 15227:31475-31494 | MS.gene36281:intron | 50.0% | |
| ! | AGCTCCGTGCATTGGTATCA+TGG | + | 15227:28054-28073 | None:intergenic | 50.0% |
| ! | CCGTGCATTGGTATCATGGT+GGG | + | 15227:28050-28069 | None:intergenic | 50.0% |
| ! | TCCGTGCATTGGTATCATGG+TGG | + | 15227:28051-28070 | None:intergenic | 50.0% |
| ! | TGCAGTCCAGTGCTAGTTTG+TGG | + | 15227:31584-31603 | None:intergenic | 50.0% |
| ! | TGTGGTTTGTGGGGTACAGA+TGG | + | 15227:30001-30020 | None:intergenic | 50.0% |
| !! | GCTGTCGGGTTTTGTGAATC+CGG | - | 15227:28249-28268 | MS.gene36281:intron | 50.0% |
| !! | TGCAAGAGTGTTACAGCCAG+AGG | - | 15227:29332-29351 | MS.gene36281:intron | 50.0% |
| AGGGTGGTTCGCGGTGATTT+GGG | - | 15227:28085-28104 | MS.gene36281:intron | 55.0% | |
| CAAGTCCCACACCGTTGTCT+CGG | - | 15227:29918-29937 | MS.gene36281:intron | 55.0% | |
| CATCTTGAGGTCGCGTGCTA+TGG | - | 15227:28279-28298 | MS.gene36281:intron | 55.0% | |
| GAGACAACGGTGTGGGACTT+GGG | + | 15227:29919-29938 | None:intergenic | 55.0% | |
| GAGGTCGCGTGCTATGGAAA+TGG | - | 15227:28285-28304 | MS.gene36281:intron | 55.0% | |
| GCAAGCTCCTCAACAACTCG+AGG | + | 15227:31510-31529 | None:intergenic | 55.0% | |
| GCTGGGAAACCATGGCGTAA+AGG | - | 15227:29388-29407 | MS.gene36281:CDS | 55.0% | |
| GGGAAACCATGGCGTAAAGG+AGG | - | 15227:29391-29410 | MS.gene36281:CDS | 55.0% | |
| !! | GGTTTTGTGAATCCGGAGCG+TGG | - | 15227:28256-28275 | MS.gene36281:intron | 55.0% |
| ACTGGACCGAGACAACGGTG+TGG | + | 15227:29927-29946 | None:intergenic | 60.0% | |
| ATCCGGAGCGTGGCATCTTG+AGG | - | 15227:28266-28285 | MS.gene36281:intron | 60.0% | |
| CAACGGTGTGGGACTTGGGT+AGG | + | 15227:29915-29934 | None:intergenic | 60.0% | |
| CAGGGTGGTTCGCGGTGATT+TGG | - | 15227:28084-28103 | MS.gene36281:intron | 60.0% | |
| CGAGACAACGGTGTGGGACT+TGG | + | 15227:29920-29939 | None:intergenic | 60.0% | |
| CTGGACCGAGACAACGGTGT+GGG | + | 15227:29926-29945 | None:intergenic | 60.0% | |
| GACCTCAAGATGCCACGCTC+CGG | + | 15227:28271-28290 | None:intergenic | 60.0% | |
| GTGGGACTTGGGTAGGAGGT+TGG | + | 15227:29908-29927 | None:intergenic | 60.0% | |
| CGGTGTGGGACTTGGGTAGG+AGG | + | 15227:29912-29931 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| 15227 | gene | 27606 | 31815 | 27606 | ID=MS.gene36281 |
| 15227 | mRNA | 27606 | 31815 | 27606 | ID=MS.gene36281.t1;Parent=MS.gene36281 |
| 15227 | exon | 31678 | 31815 | 31678 | ID=MS.gene36281.t1.exon1;Parent=MS.gene36281.t1 |
| 15227 | CDS | 31678 | 31815 | 31678 | ID=cds.MS.gene36281.t1;Parent=MS.gene36281.t1 |
| 15227 | exon | 31001 | 31189 | 31001 | ID=MS.gene36281.t1.exon2;Parent=MS.gene36281.t1 |
| 15227 | CDS | 31001 | 31189 | 31001 | ID=cds.MS.gene36281.t1;Parent=MS.gene36281.t1 |
| 15227 | exon | 29985 | 30096 | 29985 | ID=MS.gene36281.t1.exon3;Parent=MS.gene36281.t1 |
| 15227 | CDS | 29985 | 30096 | 29985 | ID=cds.MS.gene36281.t1;Parent=MS.gene36281.t1 |
| 15227 | exon | 29349 | 29431 | 29349 | ID=MS.gene36281.t1.exon4;Parent=MS.gene36281.t1 |
| 15227 | CDS | 29349 | 29431 | 29349 | ID=cds.MS.gene36281.t1;Parent=MS.gene36281.t1 |
| 15227 | exon | 29139 | 29249 | 29139 | ID=MS.gene36281.t1.exon5;Parent=MS.gene36281.t1 |
| 15227 | CDS | 29139 | 29249 | 29139 | ID=cds.MS.gene36281.t1;Parent=MS.gene36281.t1 |
| 15227 | exon | 28770 | 28856 | 28770 | ID=MS.gene36281.t1.exon6;Parent=MS.gene36281.t1 |
| 15227 | CDS | 28770 | 28856 | 28770 | ID=cds.MS.gene36281.t1;Parent=MS.gene36281.t1 |
| 15227 | exon | 27606 | 27950 | 27606 | ID=MS.gene36281.t1.exon7;Parent=MS.gene36281.t1 |
| 15227 | CDS | 27606 | 27950 | 27606 | ID=cds.MS.gene36281.t1;Parent=MS.gene36281.t1 |
| Gene Sequence |
| Protein sequence |
