AlfalfaGEDB | MS.gene36281

M. sativa cultivar XinJiangDaYe / MS.gene36281

KEGG: K10803
GO: -
PFAM: PF00533.29

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene36281.t1	XP_024631393.1	88.8	365	30	1	1	354	1	365	1.10E-180	642.5

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene36281.t1	Q24JK4	50.9	369	140	9	1	348	1	349	5.4e-86	319.3

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene36281.t1	A0A396JJC2	88.8	365	30	1	1	354	1	365	8.3e-181	642.5

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049341	MS.gene36281	0.81969	1.02E-52	-1.69E-46
MS.gene049825	MS.gene36281	0.803671	3.12E-49	-1.69E-46
MS.gene049979	MS.gene36281	0.806964	6.37E-50	-1.69E-46
MS.gene050020	MS.gene36281	0.80942	1.91E-50	-1.69E-46
MS.gene050277	MS.gene36281	0.800888	1.17E-48	-1.69E-46
MS.gene050303	MS.gene36281	0.824638	7.24E-54	-1.69E-46
MS.gene050438	MS.gene36281	0.831709	1.43E-55	-1.69E-46
MS.gene050719	MS.gene36281	0.844818	5.97E-59	-1.69E-46
MS.gene050721	MS.gene36281	0.843026	1.81E-58	-1.69E-46
MS.gene050724	MS.gene36281	0.848667	5.30E-60	-1.69E-46

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PPI:

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene36281.t1	MTR_2g102430	89.197	361	28	1	1	350	1	361	0.0	657

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene36281.t1	AT1G80420	51.075	372	135	10	1	348	1	349	2.15e-111	328
MS.gene36281.t1	AT1G80420	51.075	372	135	10	1	348	1	349	2.15e-111	328
MS.gene36281.t1	AT1G80420	51.075	372	135	10	1	348	1	349	2.15e-111	328
MS.gene36281.t1	AT1G80420	51.075	372	135	10	1	348	1	349	2.15e-111	328
MS.gene36281.t1	AT1G80420	50.136	367	134	9	1	348	1	337	4.98e-105	312

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Find 0 sgRNAs with CRISPR-Local

Find 270 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAATTAAGTGCAAAGGTTC+TGG	+	15227:31065-31084	None:intergenic	30.0%
AATACATTCCCAAGAAAGAT+AGG	+	15227:30899-30918	None:intergenic	30.0%
ATAACAAAAATAGCTGCAGA+AGG	-	15227:30580-30599	MS.gene36281:intron	30.0%
ATATCTTCCTTTGACATTGA+AGG	+	15227:31561-31580	None:intergenic	30.0%
ATCAGACTAATAATAGATGC+AGG	-	15227:30811-30830	MS.gene36281:intron	30.0%
ATGACTTCAAAAGAAGATGA+TGG	-	15227:27636-27655	MS.gene36281:CDS	30.0%
ATGAGAATTGGCAAATCATT+TGG	-	15227:31180-31199	MS.gene36281:intron	30.0%
CAATAAACCTTCAATGTCAA+AGG	-	15227:31551-31570	MS.gene36281:intron	30.0%
GAATAAAACAATTCAGTGGT+TGG	-	15227:30243-30262	MS.gene36281:intron	30.0%
GACATTGAAGGATATCTTAA+TGG	+	15227:31236-31255	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
15227	gene	27606	31815	27606	ID=MS.gene36281
15227	mRNA	27606	31815	27606	ID=MS.gene36281.t1;Parent=MS.gene36281
15227	exon	31678	31815	31678	ID=MS.gene36281.t1.exon1;Parent=MS.gene36281.t1
15227	CDS	31678	31815	31678	ID=cds.MS.gene36281.t1;Parent=MS.gene36281.t1
15227	exon	31001	31189	31001	ID=MS.gene36281.t1.exon2;Parent=MS.gene36281.t1
15227	CDS	31001	31189	31001	ID=cds.MS.gene36281.t1;Parent=MS.gene36281.t1
15227	exon	29985	30096	29985	ID=MS.gene36281.t1.exon3;Parent=MS.gene36281.t1
15227	CDS	29985	30096	29985	ID=cds.MS.gene36281.t1;Parent=MS.gene36281.t1
15227	exon	29349	29431	29349	ID=MS.gene36281.t1.exon4;Parent=MS.gene36281.t1
15227	CDS	29349	29431	29349	ID=cds.MS.gene36281.t1;Parent=MS.gene36281.t1
15227	exon	29139	29249	29139	ID=MS.gene36281.t1.exon5;Parent=MS.gene36281.t1
15227	CDS	29139	29249	29139	ID=cds.MS.gene36281.t1;Parent=MS.gene36281.t1
15227	exon	28770	28856	28770	ID=MS.gene36281.t1.exon6;Parent=MS.gene36281.t1
15227	CDS	28770	28856	28770	ID=cds.MS.gene36281.t1;Parent=MS.gene36281.t1
15227	exon	27606	27950	27606	ID=MS.gene36281.t1.exon7;Parent=MS.gene36281.t1
15227	CDS	27606	27950	27606	ID=cds.MS.gene36281.t1;Parent=MS.gene36281.t1

Gene Sequence

>MS.gene36281

ATGTCTTCCAAGAGAAACCTTCCATCATGGATGACTTCAAAAGAAGATGATGGTCACGGAAATTTTGGAAAGAGACCAACTTTGGATGAAGGTGGTGAGAAATCCAGTGAAATTGGGTCTTCCAACAAGAAGACCAAAGTTCAAAATGAAAATGCTGGAAAATCTTCTGACTTCAACAAGCTTATGGTAATTGATTAAGTTTATGTTTGGTATCACGGTGTGTTTGCCATAATCACATTGAGCCACCGTGATTTTTCGAAAGCTGCTTAGTGCGTGTTTGGTATCATGGTTGATATGTCGAAATCACACTGAGCCACCGTGATTTTGTAAAAGCTACAATGCCAAAGTGGCTATGCGAAATCACGGTGTCACCGTGATTTTGTAAAAGGTACAGTTTGTAGCTTTTGTAAAATCACGATGACTCATTGTAATTTCAGCATACCCACCATGATACCAATGCACGGAGCTTTTGTAAAATCAGGGTGGTTCGCGGTGATTTGGGCAAACTCATACAGATACCAAACATGCACTAATAAGAAACAATTAAGTAGCAGTTGTGTGTTTTTGGGTTTGTTTGCATTGTTGTTTAATGAGGTTATTAATTCATTAAACTGGTTTATGGACAGGAAGGTGTAGTTTTTGTGCTGTCGGGTTTTGTGAATCCGGAGCGTGGCATCTTGAGGTCGCGTGCTATGGAAATGGGAGCAGAGTATAAGCAGGACTGGAACTCTAATTGCACTCTTTTGGTTTGTGCATTTCCAAATACTCCCAAGTTTCGACAAGTTGAAGCTGATTGTGGAACCATTGTATCAAAGGTTTTTTCCTTTCTTTTAACTTGTTACATGTGAATGGTCTCTAAATGTATTCCTTTAAAAGTACTGCTTATATTTTGGAAAGGATAGAAGTGGAAGGAAGAACTCCTCAAGAATCTATGTCTTATACTTCTTAGGAATCCCTATTGTATGGTTTGTTATTCTCACTACTTGTGGCGTGGGATAAGTTCATTGCTCTAAGTGTCATTTTATTAATGTCTCATGGTCAGAGTTTGTAAACTACTTATCAACAAATAAGTCTCTAGTGTTGATTCATTATTGACAATCCCGTAGAATTAAAATTGAAACTATTGTCCTCAAACTTGAACCAGCTAATAGCCAAGAAGGTACTAGGGCATCTCTATGTATAATCTCATTTTTCTTTGTGGAATAATTTCTTTTTAAGCATTTAGTTTGATATTTGATATCTGTGTGCAATTTAGCGTCAATTACTGACTGTAGGCTGTTGCTGTAGTGTCTTAGTTTGCGGTGGTATTTAGAGATTAGTTGAGACATAATGGTTTTCTTTCCTCAATGAAGGAAATTAGGGATATTTTGTCTTGGTTGACATTCAGACATTAAGTTTTTGCTTGAGGAAAGGATAATAAATAGAGTCCGTTGTTCTTTTCTTTTCTAACATGAATGAGATTTTTATGTGATGTGCTAATCCAAGCCTTTCACTGAGGGGAATCCTATTTGTTACATAATCCAGACGATGCTGTTTTTTTACTAATATTGGTGGCATTAATTTTTCAAATATTATTTATTGGAATCAAGCTTACCACTTTTTAGATTTTGGTGGGAAAATTCTAGTAACGTTACACTGATTTTGGTTGTATTATTGTCCATATATTTTGTCAACAAAAACGTACCATGATGTATCCTTTATTTTGTTTTTGGGTGTTAGGATTGGATGCAAGAGTGTTACAGCCAGAGGAAACTCGTTGAAATTGATAGTTACCTTATGCATGCTGGGAAACCATGGCGTAAAGGAGGTAGATCACATGAAGTCAATGAAGGTGACATAATTTTGTATGCTAGTAAATTGATAGGACCTAGTTTAAGTTATTGTACATTTGATAAATGATTTACTGATTACCTCAATCATTTCGTATATAACATGAAATTTGAGCTCAAAAGAAGCCAATTAAGATTGCATGGAGCTGTGCACCTTTGTGACTTGCATCTTAGATCTTACGTTTCATATTCATATCTTTTCTCTCTTATTTTTCTGGAAAAGTAATTACTAATTAGAAAGAAAAAAATGTTGTTTTTGGAGCAGAATCACTGGTTTAGCTATAGAGAAAACTCCATTATCTGCAAAATATATTGATATTACGCATGCTTAATTATTCCTAAAATTACTTAAAGACCTTTTTTGTGTGTTTAAAACTTTCTTTACAACCATCTTTATCACCAAAGATATATATAAATAAGTGCAAAATTGTAAGGGCAGATCTAATTAGCTGTTGCCACATGCATGTTTGCCAACCTCCTACCCAAGTCCCACACCGTTGTCTCGGTCCAGTTTCACATCTAATATTTCCTCATGAAATTTATGCGTGAGTGCAGAACAAAAACCATCTGTACCCCACAAACCACAAAAGCATGTTGAAGGAGAGCCTTCAAAGGAGACTACTTCCATAAAATCAAAGGTAAAAGTTGGCAAAATGTTTTACAATTTTATATAATTTGAGAAAAATGGATCTAAATAACCTTTATTTTATTTGTCGATTGTTTGCTACATATTCCAGGGAAAAGACATTGACGATCCTAGGAAATGCTTTGAGCCTTCTGAAGTGAAGAAGTGGGCTCTTGATGATTTGAATAAAACAATTCAGTGGTTGGAAAGTCAAGAAGAAAAGGTTATGATCTTCTACTTTCTATATGAAAAATGTTTCTGTTCATTCTAGAGGTCACAACTTTAAGTAAGCTTTCAGAACTTGCATAGGATCAAACTAAAAGACAAAAAACAAGTGAGCTGTGAAACCAAATTCATTTGTTAAAAAAATATAGTATTTCAGTGCTCTCACTCTTACCGTGATAAATGCTTTAGAAGCAAGGCATATCTGTTGTTCTAACTTCATTTTGTTCAAGGTCTTCAGTTATATCCTATGTAAAACTAAATTCTCAAGTAATCCTTTCAGCCAGATCCAAGTGAGATAACAAAAATAGCTGCAGAAGGGATTCTGACTTGTTTGCAAGATGCCATATGTTCTCTTGAGGAAAAACAGGTAATGCACATGATTAAAACTGATTGTGACTTGTATTGGTTAGTAAGCAACTAATTTAATCATTTTCTTTTCCTGGGAGTGGCAATATAAGTAAAATTCACCTTGCATGTAGATTTTAGTTTTGTATAGAGACATCTCTTTAAATTCTATGAGAATAGTATCAGACTAATAATAGATGCAGGGCACAGATTTATATTATCATTTAAATTCATCTCATTATTATTTGAGAATTCAGAGCAATTTGCCTATCTTTCTTGGGAATGTATTAGATCAGTTAAACATAAAAACATAACATATCGTAAGTATGTCAAATTTTCTCTTGCATGAACACCAGTATTGCTTACTACTTGGATTTTTCTATTTCCTAATCATTGCCATCCTAGCTTTTTTTGTCCCTAACATAGTTTTCTCCAGAACCTTTGCACTTAATTTTTACAACAGGATGGACAATGTATAATGTCTATGTACCTAATGATGCCGACTAATTATAAGGCCTGAGTATATAGCTATACTGGATATTTTACTTGAATGAGAATTGGCAAATCATTTGGCCGAGTCATCACACTGAATGACACTCATTTCCATTAAGATATCCTTCAATGTCGTTGACAATTGGCATCTAGACTTGCTGAATTGCTTATCTAGTTTTAGTATGCTTAATCTTTGTACAGTCCATTTATATTTGGCTTTACACATGTCTGAATTCCGTGCCATCTTGGTATTCTTACTTTAAGTTTCAATGTGGGGCTGTTATATCAAGGATTAAATGGAATGCATGTTTTTGTTGCTGATTGTGTTTGTCTTGTTAAATTTAACCAGGACATTGGGAGAGTAACTGAGGACTGGAAATTCTTACCTCGAGTTGTTGAGGAGCTTGCAAAATTGGATGTTGTGGGAAACAATAAACCTTCAATGTCAAAGGAAGATATCCACAAACTAGCACTGGACTGCAAATGTATTTACGAGGAAGAACTAAATAGGTTAGATCATGAATCGACAAAGAAATCAAAGATAAATGAAGAACATAGGAGCAAAAATGGAAGAACAAATGCTGCATCTTCTTCTGGTGCAGTTGACTATGATAGTGATGATACAATCGAGATGACGGAACAAGAAATAGACCTTGCATATAAGACTTTATCCTCTAAGATGTGTCACCTGTGA

Protein sequence

>MS.gene36281.t1

MSSKRNLPSWMTSKEDDGHGNFGKRPTLDEGGEKSSEIGSSNKKTKEGVVFVLSGFVNPERGILRSRAMEMGAEYKQDWNSNCTLLVCAFPNTPKFRQVEADCGTIVSKDWMQECYSQRKLVEIDSYLMHAGKPWRKGGRSHEVNEEQKPSVPHKPQKHVEGEPSKETTSIKSKGKDIDDPRKCFEPSEVKKWALDDLNKTIQWLESQEEKPDPSEITKIAAEGILTCLQDAICSLEEKQDIGRVTEDWKFLPRVVEELAKLDVVGNNKPSMSKEDIHKLALDCKCIYEEELNRLDHESTKKSKINEEHRSKNGRTNAASSSGAVDYDSDDTIEMTEQEIDLAYKTLSSKMCHL