AlfalfaGEDB | MS.gene38257

M. sativa cultivar XinJiangDaYe / MS.gene38257

KEGG: -
GO: GO:0000166 GO:0003674 GO:0003824 GO:0004672 GO:0005488 GO:0005515 GO:0005524 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0017076 GO:0019538 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0035639 GO:0036094 GO:0036211 GO:0043167 GO:0043168 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0071704 GO:0097159 GO:0097367 GO:0140096 GO:1901265 GO:1901363 GO:1901564
PFAM: PF00069.28 PF08263.15 PF13855.9

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene38257.t1	XP_003617883.1	94.1	931	55	0	1	931	1	931	4.60E-213	751.5

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene38257.t1	C0LGR3	54.6	388	160	9	552	929	662	1043	2.6e-100	368.2
MS.gene38257.t1	C0LGR3	47.3	93	39	1	1	93	1	83	8.2e-17	90.9

Showing 1 to 2 of 2 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene38257.t1	G7K4S2	94.1	931	55	0	1	931	1	931	3.3e-213	751.5

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network:

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049232	MS.gene38257	0.803318	3.69E-49	-1.69E-46
MS.gene049285	MS.gene38257	0.804178	2.45E-49	-1.69E-46
MS.gene049320	MS.gene38257	0.810231	1.28E-50	-1.69E-46
MS.gene049396	MS.gene38257	0.807863	4.11E-50	-1.69E-46
MS.gene05010	MS.gene38257	0.811979	5.34E-51	-1.69E-46
MS.gene050662	MS.gene38257	0.804797	1.82E-49	-1.69E-46
MS.gene050686	MS.gene38257	0.824603	7.38E-54	-1.69E-46
MS.gene050772	MS.gene38257	0.817886	2.61E-52	-1.69E-46
MS.gene051167	MS.gene38257	-0.820607	6.27E-53	-1.69E-46
MS.gene051551	MS.gene38257	0.817416	3.33E-52	-1.69E-46

Showing 1 to 10 of 47 entries

Previous1 2 3 4 5Next

PPI:

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene38257.t1	MTR_5g096530	94.522	931	51	0	1	931	1	931	0.0	1766
MS.gene38257.t1	MTR_3g060880	48.688	1029	395	12	29	928	31	1055	0.0	848
MS.gene38257.t1	MTR_5g045910	38.100	1021	467	15	59	928	58	1064	0.0	637
MS.gene38257.t1	MTR_4g105370	42.027	878	459	12	95	929	182	1052	0.0	622
MS.gene38257.t1	MTR_4g105370	56.069	519	226	2	34	551	26	543	1.40e-166	516
MS.gene38257.t1	MTR_4g105370	39.259	135	80	2	442	574	72	206	7.81e-13	73.2
MS.gene38257.t1	MTR_7g059285	36.562	1053	489	15	42	928	35	1074	0.0	608
MS.gene38257.t1	MTR_3g090480	36.588	1055	513	17	17	929	6	1046	0.0	597
MS.gene38257.t1	MTR_1g097580	34.525	1063	521	20	15	928	9	1045	3.34e-171	526
MS.gene38257.t1	MTR_1g080440	32.866	998	570	21	14	928	7	987	8.10e-153	477

Showing 1 to 10 of 1,433 entries

Previous1 2 3 4 5…144Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene38257.t1	AT5G56040	49.083	872	396	14	95	930	184	1043	0.0	768
MS.gene38257.t1	AT5G56040	60.294	544	193	2	32	552	25	568	0.0	630
MS.gene38257.t1	AT4G26540	47.870	892	419	16	75	930	163	1044	0.0	743
MS.gene38257.t1	AT4G26540	62.544	574	181	5	32	575	22	591	0.0	643
MS.gene38257.t1	AT5G56040	60.294	544	193	2	32	552	25	568	0.0	629
MS.gene38257.t1	AT5G56040	46.204	764	363	14	95	822	184	935	0.0	611
MS.gene38257.t1	AT3G24240	40.769	910	452	15	85	928	179	1067	0.0	610
MS.gene38257.t1	AT3G24240	52.621	515	240	4	59	571	61	573	9.16e-165	512
MS.gene38257.t1	AT5G48940	37.094	1046	478	22	41	927	42	1066	0.0	591
MS.gene38257.t1	AT1G34110	37.251	902	483	15	89	928	173	1053	3.04e-166	514

Showing 1 to 10 of 1,354 entries

Previous1 2 3 4 5…136Next

Find 187 sgRNAs with CRISPR-Local

Find 210 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATTCAAGTTCTTCAAGT+TGG	0.449810	5.3:-77960261	None:intergenic
AAACAACAATCATCTTGTAG+GGG	0.682910	5.3:+77960292	MS.gene38257:CDS
AAAGCAACAAATGTGTTGAT+AGG	0.402533	5.3:+77961121	MS.gene38257:CDS
AAAGGTCTTCGCATTCCTGA+TGG	0.582195	5.3:+77960512	MS.gene38257:CDS
AAATCCCAGAAGAAATTTGC+AGG	0.450139	5.3:+77959232	MS.gene38257:CDS
AAGAATCACTTGGCTAGCAA+AGG	0.600445	5.3:+77961620	MS.gene38257:CDS
AAGACCGACGTGTACAGTTT+CGG	0.432022	5.3:+77961515	MS.gene38257:CDS
AAGCTTCAAGTATTCAGAGC+TGG	0.539271	5.3:+77959405	MS.gene38257:CDS
AAGGCCAAGCTCTTATAGCA+TGG	0.601371	5.3:+77958920	MS.gene38257:CDS
AAGGCCTAACATGACCAAGT+CGG	0.681789	5.3:-77959478	None:intergenic

Showing 1 to 10 of 187 entries

Previous1 2 3 4 5…19Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
AAACAACAATCATCTTGTAG+GGG	+	chr5.3:77960292-77960311	MS.gene38257:CDS	30.0%
AATCCAAACTTCTCATACAA+AGG	-	chr5.3:77960713-77960732	None:intergenic	30.0%
AATGATCTCACTGGAAATAA+AGG	+	chr5.3:77960494-77960513	MS.gene38257:CDS	30.0%
AGAAAAGGGAAAGTTAGAAT+GGG	+	chr5.3:77961009-77961028	MS.gene38257:CDS	30.0%
AGTATTTCATGCATAACAGT+AGG	-	chr5.3:77961689-77961708	None:intergenic	30.0%
ATCTAATCTAACACGACATT+TGG	-	chr5.3:77960567-77960586	None:intergenic	30.0%
ATGTCGTGTTAGATTAGATA+TGG	+	chr5.3:77960568-77960587	MS.gene38257:CDS	30.0%
ATTCTTGACTTAAAGCTTAG+AGG	+	chr5.3:77961656-77961675	MS.gene38257:CDS	30.0%
ATTGACAACAATGCTATTAC+TGG	+	chr5.3:77959930-77959949	MS.gene38257:CDS	30.0%
CTTAATAAGCCAATACTCTT+TGG	-	chr5.3:77959384-77959403	None:intergenic	30.0%

Showing 1 to 10 of 210 entries

Previous1 2 3 4 5…21Next

Chromosome	Type	Strat	End	Strand	Name
chr5.3	gene	77958808	77961814	77958808	ID=MS.gene38257
chr5.3	mRNA	77958808	77961814	77958808	ID=MS.gene38257.t1;Parent=MS.gene38257
chr5.3	exon	77958808	77961274	77958808	ID=MS.gene38257.t1.exon1;Parent=MS.gene38257.t1
chr5.3	CDS	77958808	77961274	77958808	ID=cds.MS.gene38257.t1;Parent=MS.gene38257.t1
chr5.3	exon	77961486	77961814	77961486	ID=MS.gene38257.t1.exon2;Parent=MS.gene38257.t1
chr5.3	CDS	77961486	77961814	77961486	ID=cds.MS.gene38257.t1;Parent=MS.gene38257.t1

Gene Sequence

>MS.gene38257

ATGTCTACAAACTTAAATAATCTGTCACTTTTTCACAAAATTTTCTACCTCACTTTGCTTCTTCTCTCGATAAACTCTCTTATCTTTCCATGTTGTAACTCTCTTGATGAACAAGGCCAAGCTCTTATAGCATGGAAGAACAGTTTAAACATTACTGCAGATGTATTACCATCTTGGAACCTTTCAAACCAAACACCATGTAATTGGTTTGGTGTGAAGTGCAATTTACAAGGAGAGGTAGAAGAGATAAACTTGAAGTCATTGAACTTGCAAGGTTCATCATTGCCTTCCAATTTTCAACCTCTCAAGTCCTTGAAGGTTCTTGTCCTCTCATCAAACAACATAACAGGAAGGATTCCAAAAGAATTTGGAGACTATCAAGAGCTCATTTTCATTGATCTCAGTGAAAATTTTCTCTTTGGTGAAATCCCAGAAGAAATTTGCAGGCTAAGCAAACTTCAAACTTTAGCTCTTCATACAAACTCTCTTGAAGGAAATATTCCATTCAACATAGGAAATTTACCTAGTCTTGTGAACTTGACACTCTATGACAATAAACTCAGTGGCGAAATTCCAAAGAGTATTGGCTTATTAAGTAAGCTTCAAGTATTCAGAGCTGGAGGCAATAAAAATCTCAAGGGCGAGCTGCCATCGGAGATCGGAAGCTGCACCGACTTGGTCATGTTAGGCCTTGCAGAAACCGGCATTTCCGGTAGTATTCCTTCTTCAATAGGGATGCTAAAAAAATTACAGACCATAGCTATTTACACAACTCAGTTGTCAGGCTCTATACCAGAAGAGATAGGGAATTGCAGTGAGTTGCAGAATCTGTATTTGTATCAGAACTCAATTTCTGGTTCAATTCCACCTCAAATTGGTGAGCTCAGAAAGCTTCAGAGTCTACTTTTATGGCAAAACAATATGGTAGGAGCAATTCCAGAAGAGCTTGGAAACTGCAGAGAGCTCAGTGAGATTGATTTGTCAGAAAATCTTCTCACAGGTAGCATACCAATCAGTTTTGGAAAGCTATCAAATCTGCAAGGACTTCAACTGAGTGTTAATCAGCTGTCAGGTATTATACCACCTGAAATTTCAAACTGCAGTTCTTTGACTCAGCTGGAAATTGACAACAATGCTATTACTGGTGAGATTCCTTCTGTTATTGGCAACTTGAGAAGCTTGTCTCTCTTCTTTGCATGGAAGAACAAGCTAACAGGAAAAATCCCAAATAGTCTTTCAGAGTGTCAAAATCTTCAGGCACTTGATCTTTCATACAACAACCTAACTGGTTCAATACCAAAACAACTATTTTTGTTGAGGAATCTCACTCAGCTCATGCTTATCTCCAATGATTTGGAAGGATTAATACCACCTGATATAGGTAACTGCACAAGTCTCTACAGACTGAGGTTAAATCAGAATAGATTGGTTGGTACCATTCCGTCTGAAATTGCCAACTTGAAGAACTTGAATTTTTTGGACTTAAACAACAATCATCTTGTAGGGGAGATTCCATCTCAGTTCACTGGTCTTAGCAAACTTGGAGTGCTTGATCTCTCCCACAACAAGCTCTCAGGGAATTTGGATACTCTTTCTAACCTTCAGAATCTTGTTTCTTTAAATGTTTCCTACAATGAATTCTCTGGTGAATTGCCTAACACAGCATTCTTTAGGAAACTCCCTCTCAATGATCTCACTGGAAATAAAGGTCTTCGCATTCCTGATGGTGTTGTAACTCCAGCTAACAGAACAAGAGCCAAATGTCGTGTTAGATTAGATATGGAGATTATATTGCTCATTCTCTTGAGCACCAGTGCAGCACTAATACTTCTCACAATCTATGTTCTGGTTCGTGCTCATGTTGCTGATGAAGCATTCATGAGAAATAACAATTCGGTGATGCCTTTGTATGAGAAGTTTGGATTCTTCTCTATTGATAACATCGTCAAGAATTTCAAAGCATCTAATATGATTGACACCACAAATTCTGGAGTTTTGTACAAGGTAACAATTCCAAAAGGCCATATACTAACAGTTAAAAAGATGTGGCCAGATTCAAGAGCTTCTAGTTCTGAAATTCAAATGTTAAGTTCAATCAAACATAAGAATATCATCAAGCTTCTTGCTTGGGGATCCTATAAGAATATGATGCTGCAGTTTTATGACTACTTCCCAAGTCTGAGCTCATTGCTTCATGGTTCAGAAAAGGGAAAGTTAGAATGGGATACCAGGTATGAAGTCATCTTAGGCCTAGCTCAAGCACTTGCATATTTGCACCATGATTGTGTGCCTTCCATATTTCATGGAGATGTCAAAGCAACAAATGTGTTGATAGGTCCTGGTTATCATCCTTACCTTGCTTACTACGGCCTGACAAAAATTGCAAGTGTAAAGGGTGAAAATACTAATCTCAATCCAGTTCAAAGACCTCCCTACTCCGAGAGTTCTTATGGATACATAGATCCTGGTAATTTATCTTTCTATCTATCTATTTATCAACAAGTCTATCTTTATGATTTCATTTCCCGCCTAAAACATGTTTTAGTACCTATGTTTTTATGCAGGTTTCACTAGTACTAGTTTTTCCACTACATTTAAGTTAGTTTGAGTAGTAATTTTCAATACTTTACATAAACCATTGCACAGTACTTATTTTTATTGTTTTGGCATGTGTACAGAGCTTGACTCGTTGCAGAAGATCAATGAGAAGACCGACGTGTACAGTTTCGGTGTGGTCCTACTTGAGGTGCTGACAGGAAGGCACCCATTAGATCCAACTCTGCCAGGAGGTATACACTTGGTTCAATGGGTTAAGAATCACTTGGCTAGCAAAGGAGACCCATCTGGAATTCTTGACTTAAAGCTTAGAGGGACTAAACCTACTGTTATGCATGAAATACTACAGACTCTAGCTGTGTCATTACTATGTGTCAGTACAAAAGCTTATGACCGTCCAACAATGAAGGACACTGTTGCAATGCTCAACCAATTTCGATACTTTTCTTAG

Protein sequence

>MS.gene38257.t1

MSTNLNNLSLFHKIFYLTLLLLSINSLIFPCCNSLDEQGQALIAWKNSLNITADVLPSWNLSNQTPCNWFGVKCNLQGEVEEINLKSLNLQGSSLPSNFQPLKSLKVLVLSSNNITGRIPKEFGDYQELIFIDLSENFLFGEIPEEICRLSKLQTLALHTNSLEGNIPFNIGNLPSLVNLTLYDNKLSGEIPKSIGLLSKLQVFRAGGNKNLKGELPSEIGSCTDLVMLGLAETGISGSIPSSIGMLKKLQTIAIYTTQLSGSIPEEIGNCSELQNLYLYQNSISGSIPPQIGELRKLQSLLLWQNNMVGAIPEELGNCRELSEIDLSENLLTGSIPISFGKLSNLQGLQLSVNQLSGIIPPEISNCSSLTQLEIDNNAITGEIPSVIGNLRSLSLFFAWKNKLTGKIPNSLSECQNLQALDLSYNNLTGSIPKQLFLLRNLTQLMLISNDLEGLIPPDIGNCTSLYRLRLNQNRLVGTIPSEIANLKNLNFLDLNNNHLVGEIPSQFTGLSKLGVLDLSHNKLSGNLDTLSNLQNLVSLNVSYNEFSGELPNTAFFRKLPLNDLTGNKGLRIPDGVVTPANRTRAKCRVRLDMEIILLILLSTSAALILLTIYVLVRAHVADEAFMRNNNSVMPLYEKFGFFSIDNIVKNFKASNMIDTTNSGVLYKVTIPKGHILTVKKMWPDSRASSSEIQMLSSIKHKNIIKLLAWGSYKNMMLQFYDYFPSLSSLLHGSEKGKLEWDTRYEVILGLAQALAYLHHDCVPSIFHGDVKATNVLIGPGYHPYLAYYGLTKIASVKGENTNLNPVQRPPYSESSYGYIDPELDSLQKINEKTDVYSFGVVLLEVLTGRHPLDPTLPGGIHLVQWVKNHLASKGDPSGILDLKLRGTKPTVMHEILQTLAVSLLCVSTKAYDRPTMKDTVAMLNQFRYFS