Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene38772.t1 | RHN47751.1 | 93.9 | 428 | 26 | 0 | 1 | 428 | 220 | 647 | 2.30E-236 | 827.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene38772.t1 | F4HVY0 | 52.7 | 429 | 196 | 2 | 1 | 422 | 192 | 620 | 4.6e-132 | 472.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene38772.t1 | A2Q2Y5 | 93.9 | 428 | 26 | 0 | 1 | 428 | 189 | 616 | 1.7e-236 | 827.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049150 | MS.gene38772 | 0.803023 | 4.25E-49 | -1.69E-46 |
| MS.gene049151 | MS.gene38772 | 0.808047 | 3.75E-50 | -1.69E-46 |
| MS.gene049758 | MS.gene38772 | 0.832927 | 7.15E-56 | -1.69E-46 |
| MS.gene049910 | MS.gene38772 | 0.813556 | 2.41E-51 | -1.69E-46 |
| MS.gene049915 | MS.gene38772 | 0.826221 | 3.05E-54 | -1.69E-46 |
| MS.gene050128 | MS.gene38772 | 0.812229 | 4.71E-51 | -1.69E-46 |
| MS.gene050226 | MS.gene38772 | 0.802463 | 5.54E-49 | -1.69E-46 |
| MS.gene050586 | MS.gene38772 | 0.826519 | 2.60E-54 | -1.69E-46 |
| MS.gene050623 | MS.gene38772 | -0.807562 | 4.76E-50 | -1.69E-46 |
| MS.gene050762 | MS.gene38772 | 0.80136 | 9.34E-49 | -1.69E-46 |
| MS.gene050763 | MS.gene38772 | 0.804346 | 2.26E-49 | -1.69E-46 |
| MS.gene051487 | MS.gene38772 | 0.811924 | 5.49E-51 | -1.69E-46 |
| MS.gene051626 | MS.gene38772 | 0.846853 | 1.67E-59 | -1.69E-46 |
| MS.gene051663 | MS.gene38772 | 0.81934 | 1.22E-52 | -1.69E-46 |
| MS.gene051789 | MS.gene38772 | 0.832693 | 8.17E-56 | -1.69E-46 |
| MS.gene051860 | MS.gene38772 | 0.835096 | 2.05E-56 | -1.69E-46 |
| MS.gene052178 | MS.gene38772 | 0.822933 | 1.82E-53 | -1.69E-46 |
| MS.gene052255 | MS.gene38772 | 0.82329 | 1.50E-53 | -1.69E-46 |
| MS.gene052337 | MS.gene38772 | 0.829062 | 6.35E-55 | -1.69E-46 |
| MS.gene052967 | MS.gene38772 | 0.800459 | 1.43E-48 | -1.69E-46 |
| MS.gene053074 | MS.gene38772 | 0.884863 | 1.33E-71 | -1.69E-46 |
| MS.gene053204 | MS.gene38772 | 0.811156 | 8.06E-51 | -1.69E-46 |
| MS.gene053836 | MS.gene38772 | 0.840996 | 6.21E-58 | -1.69E-46 |
| MS.gene054184 | MS.gene38772 | 0.88251 | 9.80E-71 | -1.69E-46 |
| MS.gene054185 | MS.gene38772 | 0.885356 | 8.72E-72 | -1.69E-46 |
| MS.gene054596 | MS.gene38772 | 0.842832 | 2.03E-58 | -1.69E-46 |
| MS.gene054713 | MS.gene38772 | 0.814552 | 1.45E-51 | -1.69E-46 |
| MS.gene055133 | MS.gene38772 | 0.835859 | 1.31E-56 | -1.69E-46 |
| MS.gene055207 | MS.gene38772 | 0.812782 | 3.56E-51 | -1.69E-46 |
| MS.gene055422 | MS.gene38772 | 0.811323 | 7.42E-51 | -1.69E-46 |
| MS.gene055860 | MS.gene38772 | 0.829879 | 4.02E-55 | -1.69E-46 |
| MS.gene056191 | MS.gene38772 | 0.802239 | 6.17E-49 | -1.69E-46 |
| MS.gene057260 | MS.gene38772 | 0.801207 | 1.00E-48 | -1.69E-46 |
| MS.gene057750 | MS.gene38772 | 0.839643 | 1.40E-57 | -1.69E-46 |
| MS.gene057754 | MS.gene38772 | 0.867711 | 1.12E-65 | -1.69E-46 |
| MS.gene058002 | MS.gene38772 | 0.822603 | 2.17E-53 | -1.69E-46 |
| MS.gene058042 | MS.gene38772 | 0.813453 | 2.54E-51 | -1.69E-46 |
| MS.gene05811 | MS.gene38772 | 0.816604 | 5.08E-52 | -1.69E-46 |
| MS.gene058168 | MS.gene38772 | 0.86106 | 1.34E-63 | -1.69E-46 |
| MS.gene058484 | MS.gene38772 | 0.808704 | 2.72E-50 | -1.69E-46 |
| MS.gene059006 | MS.gene38772 | 0.845884 | 3.07E-59 | -1.69E-46 |
| MS.gene05907 | MS.gene38772 | 0.816107 | 6.56E-52 | -1.69E-46 |
| MS.gene059124 | MS.gene38772 | 0.89203 | 2.31E-74 | -1.69E-46 |
| MS.gene059294 | MS.gene38772 | 0.839204 | 1.82E-57 | -1.69E-46 |
| MS.gene059421 | MS.gene38772 | 0.845126 | 4.93E-59 | -1.69E-46 |
| MS.gene059518 | MS.gene38772 | 0.801642 | 8.18E-49 | -1.69E-46 |
| MS.gene05984 | MS.gene38772 | 0.818451 | 1.95E-52 | -1.69E-46 |
| MS.gene06037 | MS.gene38772 | 0.804037 | 2.62E-49 | -1.69E-46 |
| MS.gene060476 | MS.gene38772 | 0.825573 | 4.36E-54 | -1.69E-46 |
| MS.gene061049 | MS.gene38772 | 0.821065 | 4.92E-53 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene38772.t1 | MTR_7g090140 | 93.706 | 429 | 27 | 0 | 1 | 429 | 94 | 522 | 0.0 | 839 |
| MS.gene38772.t1 | MTR_7g090140 | 93.706 | 429 | 27 | 0 | 1 | 429 | 189 | 617 | 0.0 | 838 |
| MS.gene38772.t1 | MTR_7g090100 | 86.682 | 428 | 55 | 2 | 1 | 427 | 189 | 615 | 0.0 | 775 |
| MS.gene38772.t1 | MTR_7g090120 | 86.247 | 429 | 57 | 2 | 1 | 427 | 189 | 617 | 0.0 | 761 |
| MS.gene38772.t1 | MTR_4g054150 | 78.960 | 423 | 88 | 1 | 3 | 424 | 170 | 592 | 0.0 | 712 |
| MS.gene38772.t1 | MTR_4g054290 | 79.294 | 425 | 87 | 1 | 1 | 424 | 189 | 613 | 0.0 | 709 |
| MS.gene38772.t1 | MTR_8g009560 | 62.207 | 426 | 159 | 1 | 1 | 424 | 192 | 617 | 0.0 | 545 |
| MS.gene38772.t1 | MTR_8g009590 | 55.869 | 426 | 185 | 2 | 2 | 424 | 229 | 654 | 0.0 | 526 |
| MS.gene38772.t1 | MTR_4g129630 | 32.251 | 431 | 268 | 6 | 10 | 422 | 200 | 624 | 1.07e-70 | 235 |
| MS.gene38772.t1 | MTR_4g054320 | 81.132 | 53 | 10 | 0 | 372 | 424 | 43 | 95 | 3.45e-26 | 102 |
| MS.gene38772.t1 | MTR_8g009550 | 65.217 | 46 | 16 | 0 | 10 | 55 | 42 | 87 | 2.39e-14 | 68.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene38772.t1 | AT1G02190 | 54.861 | 432 | 184 | 6 | 1 | 422 | 192 | 622 | 1.09e-166 | 482 |
| MS.gene38772.t1 | AT1G02205 | 52.619 | 420 | 192 | 2 | 10 | 422 | 37 | 456 | 2.56e-165 | 473 |
| MS.gene38772.t1 | AT2G37700 | 54.439 | 428 | 189 | 3 | 1 | 422 | 188 | 615 | 4.18e-165 | 478 |
| MS.gene38772.t1 | AT1G02190 | 54.398 | 432 | 182 | 7 | 1 | 422 | 192 | 618 | 1.56e-163 | 474 |
| MS.gene38772.t1 | AT2G37700 | 53.991 | 426 | 185 | 3 | 1 | 422 | 188 | 606 | 1.64e-162 | 471 |
| MS.gene38772.t1 | AT1G02205 | 52.619 | 420 | 192 | 2 | 10 | 422 | 202 | 621 | 3.47e-162 | 471 |
| MS.gene38772.t1 | AT1G02205 | 52.619 | 420 | 192 | 2 | 10 | 422 | 201 | 620 | 6.46e-162 | 470 |
| MS.gene38772.t1 | AT1G02205 | 52.235 | 425 | 191 | 2 | 10 | 422 | 201 | 625 | 2.75e-161 | 469 |
| MS.gene38772.t1 | AT2G37700 | 54.188 | 382 | 169 | 3 | 47 | 422 | 197 | 578 | 4.22e-145 | 426 |
| MS.gene38772.t1 | AT1G02205 | 51.070 | 374 | 176 | 2 | 56 | 422 | 8 | 381 | 1.43e-139 | 404 |
| MS.gene38772.t1 | AT2G37700 | 54.386 | 285 | 129 | 1 | 1 | 284 | 188 | 472 | 2.81e-106 | 323 |
| MS.gene38772.t1 | AT5G57800 | 35.023 | 434 | 262 | 5 | 10 | 427 | 203 | 632 | 6.26e-79 | 256 |
Find 74 sgRNAs with CRISPR-Local
Find 146 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCTATCTATGACTACATTTA+TGG | 0.121937 | 7.1:-17220618 | MS.gene38772:CDS |
| CATTGCATCACACCAAATTT+AGG | 0.268596 | 7.1:-17220662 | MS.gene38772:CDS |
| TCTTCTGTGGCTGCATTATA+TGG | 0.280229 | 7.1:-17220899 | MS.gene38772:CDS |
| TTTGGAGGGGAGTGTGAAAA+TGG | 0.284339 | 7.1:+17218433 | None:intergenic |
| TACTTAGCACTAATAAAGTA+TGG | 0.287196 | 7.1:-17218128 | MS.gene38772:CDS |
| CCAATCCTCAAACATCTAAA+TGG | 0.289968 | 7.1:-17220455 | MS.gene38772:CDS |
| AAGATGGACAAGAGTTTCTT+AGG | 0.291916 | 7.1:+17220818 | None:intergenic |
| CAATCAAGTTGTTCAATGTT+AGG | 0.309746 | 7.1:+17219611 | None:intergenic |
| AGCATATAGCACATTGTAAA+TGG | 0.310164 | 7.1:+17220414 | None:intergenic |
| ATTATAGAGGCTGAGTTAAA+TGG | 0.311396 | 7.1:-17219580 | MS.gene38772:CDS |
| CATGCACTCATAACTCTTCT+TGG | 0.337343 | 7.1:+17218213 | None:intergenic |
| TGAGTAATTAGACCTAAATT+TGG | 0.355788 | 7.1:+17220650 | None:intergenic |
| AGCACTTGATTTGTTCCTTT+AGG | 0.358378 | 7.1:+17218928 | None:intergenic |
| GCAGGTGGTTGTATTGTATA+AGG | 0.364224 | 7.1:-17218723 | MS.gene38772:intron |
| TCTTCGAGGCAAGTTCAATA+AGG | 0.388690 | 7.1:-17218905 | MS.gene38772:CDS |
| TCCATCTATCAATTACGTTT+AGG | 0.399860 | 7.1:-17220495 | MS.gene38772:CDS |
| TTGAAGATAAAAGTTGTAGA+TGG | 0.404670 | 7.1:-17218988 | MS.gene38772:CDS |
| GGAATAACTCATGCTTTAGA+AGG | 0.408256 | 7.1:-17218180 | MS.gene38772:CDS |
| TTTGTTAAGTGCACCACATC+AGG | 0.416731 | 7.1:+17220534 | None:intergenic |
| TGTGAATTCATGAATGTAGT+AGG | 0.418846 | 7.1:+17218361 | None:intergenic |
| CCATTTAGATGTTTGAGGAT+TGG | 0.424146 | 7.1:+17220455 | None:intergenic |
| TAAATGGCCACATTAAATAT+AGG | 0.426605 | 7.1:+17220430 | None:intergenic |
| GCCTAAACGTAATTGATAGA+TGG | 0.428882 | 7.1:+17220494 | None:intergenic |
| TCAACCTTTGGAATATTAAC+CGG | 0.430245 | 7.1:+17218644 | None:intergenic |
| TGGCTTGTGAGAATCTTTAG+AGG | 0.433750 | 7.1:+17218078 | None:intergenic |
| ACCACATCAGGTGACTCCTT+TGG | 0.442519 | 7.1:+17220546 | None:intergenic |
| ATGAGTGCATGGCGTATTGC+TGG | 0.452189 | 7.1:-17218201 | MS.gene38772:CDS |
| TAATAACAGATATGGTTAGT+TGG | 0.455968 | 7.1:-17218511 | MS.gene38772:intron |
| TATGGTTAGTTGGAGATGAA+TGG | 0.456856 | 7.1:-17218501 | MS.gene38772:CDS |
| GTAGTAGGAGTGATCATTGC+CGG | 0.457163 | 7.1:+17218376 | None:intergenic |
| AGGTACCATTTAGATGTTTG+AGG | 0.458347 | 7.1:+17220450 | None:intergenic |
| CCATAAATGTAGTCATAGAT+AGG | 0.467628 | 7.1:+17220618 | None:intergenic |
| GCTTAAAGAGCTTGAACAAA+GGG | 0.470188 | 7.1:-17218696 | MS.gene38772:CDS |
| CCCCATTGATTAGTCACGCT+TGG | 0.472522 | 7.1:+17218058 | None:intergenic |
| TTTAGATGTTTGAGGATTGG+AGG | 0.484617 | 7.1:+17220458 | None:intergenic |
| ATACTTCAAAAGTGGAAAGA+TGG | 0.485876 | 7.1:+17220802 | None:intergenic |
| CTGTAACTTGAGATCATTGA+AGG | 0.490068 | 7.1:+17220347 | None:intergenic |
| GAACAAAGGGTCATCACAAA+AGG | 0.490773 | 7.1:-17218683 | MS.gene38772:CDS |
| TATGAGAGATACTTCAAAAG+TGG | 0.491760 | 7.1:+17220794 | None:intergenic |
| CTCCTTTGGTCTCATCAATG+AGG | 0.500114 | 7.1:+17220560 | None:intergenic |
| ATGGTTAGTTGGAGATGAAT+GGG | 0.501106 | 7.1:-17218500 | MS.gene38772:CDS |
| GGAGCAAAGGTTATAAGTCT+AGG | 0.512903 | 7.1:-17219559 | MS.gene38772:CDS |
| GTGTTGAACAACATTCCTAA+AGG | 0.513501 | 7.1:-17218943 | MS.gene38772:CDS |
| CATTGATTTCATGAACAACA+TGG | 0.515742 | 7.1:-17220864 | MS.gene38772:CDS |
| GATTGAAGAGACAATTATAG+AGG | 0.521540 | 7.1:-17219593 | MS.gene38772:CDS |
| AGGAAACTTAGCTCTTTCAC+CGG | 0.523167 | 7.1:-17218663 | MS.gene38772:CDS |
| ATGATCTCAAGTTACAGTGT+TGG | 0.525776 | 7.1:-17220341 | MS.gene38772:CDS |
| TAACTCATGCTTTAGAAGGA+TGG | 0.533714 | 7.1:-17218176 | MS.gene38772:CDS |
| TTGTGAGAATCTTTAGAGGT+TGG | 0.536944 | 7.1:+17218082 | None:intergenic |
| ACTGTGAACTTTATATTCGA+AGG | 0.537501 | 7.1:-17219020 | MS.gene38772:CDS |
| CTTGCATAAAGCATTAGCAA+TGG | 0.548575 | 7.1:+17218873 | None:intergenic |
| ACAAATCAAGTGCTTCTTCG+AGG | 0.550673 | 7.1:-17218919 | MS.gene38772:CDS |
| AGCTTAAAGAGCTTGAACAA+AGG | 0.552700 | 7.1:-17218697 | MS.gene38772:CDS |
| GTATAGTGTCTCCACACTCA+TGG | 0.557211 | 7.1:+17218148 | None:intergenic |
| AACATCTGTGGATTTATCTA+CGG | 0.560707 | 7.1:+17220593 | None:intergenic |
| GGCTGAGTTAAATGGAGCAA+AGG | 0.563581 | 7.1:-17219572 | MS.gene38772:CDS |
| TGATCATTGCCGGTGTAAAG+TGG | 0.567817 | 7.1:+17218386 | None:intergenic |
| ATGAACAATGTTGTCAACAT+TGG | 0.568859 | 7.1:+17220929 | None:intergenic |
| ACTTAGCACTAATAAAGTAT+GGG | 0.582927 | 7.1:-17218127 | MS.gene38772:CDS |
| CAAGAAGAGTTATGAGTGCA+TGG | 0.584185 | 7.1:-17218212 | MS.gene38772:CDS |
| CATGAATTCACACTCTTGTG+AGG | 0.587054 | 7.1:-17218350 | MS.gene38772:intron |
| TTCACCGGTTAATATTCCAA+AGG | 0.589759 | 7.1:-17218648 | MS.gene38772:intron |
| ATTGATTTCATGAACAACAT+GGG | 0.593212 | 7.1:-17220863 | MS.gene38772:CDS |
| GGTTTCATATGTAACATCTG+TGG | 0.594233 | 7.1:+17220581 | None:intergenic |
| AATGGTACCTATATTTAATG+TGG | 0.602899 | 7.1:-17220437 | MS.gene38772:CDS |
| TCAACACAATTGCAGCAGCT+AGG | 0.603032 | 7.1:+17218959 | None:intergenic |
| GAGCAAATGAAAGCATCAGA+AGG | 0.627033 | 7.1:-17218469 | MS.gene38772:CDS |
| TGGGAAGCAAGTATTCGTCA+TGG | 0.629295 | 7.1:-17218108 | MS.gene38772:CDS |
| TTGCTTCTACCACTTTACAC+CGG | 0.631400 | 7.1:-17218395 | MS.gene38772:CDS |
| ACCAAAGGAGTCACCTGATG+TGG | 0.648730 | 7.1:-17220547 | MS.gene38772:CDS |
| ATTTGGTGTGATGCAATGAG+TGG | 0.652793 | 7.1:+17220667 | None:intergenic |
| GGATGGAATGACCATGAGTG+TGG | 0.655796 | 7.1:-17218159 | MS.gene38772:CDS |
| AACCTCATTGATGAGACCAA+AGG | 0.656049 | 7.1:-17220562 | MS.gene38772:CDS |
| TGTGCTATATGCTTATGACA+TGG | 0.707082 | 7.1:-17220404 | MS.gene38772:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TGCATATTAAAAATAAATAT+TGG | + | chr7.1:17220380-17220399 | None:intergenic | 10.0% |
| !! | AAATGCTATTAAAATTAAGT+AGG | - | chr7.1:17219244-17219263 | MS.gene38772:intron | 15.0% |
| !! | AAATGCTATTAAAATTAAGT+AGG | + | chr7.1:17219263-17219244 | None:intergenic | 15.0% |
| !! | AATGCTATTAAAATTAAGTA+GGG | - | chr7.1:17219245-17219264 | MS.gene38772:intron | 15.0% |
| !! | AATGCTATTAAAATTAAGTA+GGG | + | chr7.1:17219264-17219245 | None:intergenic | 15.0% |
| !! | AGATAAAAAGTAATAAAATC+TGG | - | chr7.1:17219053-17219072 | MS.gene38772:intron | 15.0% |
| !! | ATTTATATATGTAACAGAAT+TGG | - | chr7.1:17220758-17220777 | MS.gene38772:intron | 15.0% |
| !! | TATAATAGTATATATACTGA+AGG | + | chr7.1:17220697-17220716 | None:intergenic | 15.0% |
| !! | TTCAAAAATTTAAGAGTTTA+AGG | + | chr7.1:17219172-17219153 | None:intergenic | 15.0% |
| !! | TTTGAAAAATACTACAAAAT+AGG | + | chr7.1:17219357-17219376 | None:intergenic | 15.0% |
| !!! | AATATTGATTCATCATTTAA+AGG | + | chr7.1:17220445-17220464 | None:intergenic | 15.0% |
| !!! | ATTTTGTAGTATTTTTCAAA+AGG | - | chr7.1:17219357-17219376 | MS.gene38772:intron | 15.0% |
| !!! | CAATTTATATAGTTTTCAAA+AGG | - | chr7.1:17219659-17219678 | MS.gene38772:intron | 15.0% |
| !!! | GTAAAATAATGTTTTTGATT+CGG | - | chr7.1:17219915-17219934 | MS.gene38772:intron | 15.0% |
| !!! | TTTTGTAGTATTTTTCAAAA+GGG | - | chr7.1:17219358-17219377 | MS.gene38772:intron | 15.0% |
| !! | AAACAAATTTGAATTGAGTA+GGG | - | chr7.1:17219183-17219202 | MS.gene38772:intron | 20.0% |
| !! | TAAACAAATTTGAATTGAGT+AGG | - | chr7.1:17219182-17219201 | MS.gene38772:intron | 20.0% |
| !!! | AATTTTGCGATAATTTTTTG+CGG | - | chr7.1:17219088-17219107 | MS.gene38772:intron | 20.0% |
| !!! | TCATTTTGTAATAACAGATA+TGG | - | chr7.1:17220478-17220497 | MS.gene38772:CDS | 20.0% |
| !!! | TTTTTTATGTTGCAAAGTTT+AGG | + | chr7.1:17219819-17219838 | None:intergenic | 20.0% |
| ! | AATGGTACCTATATTTAATG+TGG | - | chr7.1:17218560-17218579 | MS.gene38772:intron | 25.0% |
| ! | ACTTAGCACTAATAAAGTAT+GGG | - | chr7.1:17220870-17220889 | MS.gene38772:CDS | 25.0% |
| ! | AGGAGAAAATAATTAGCATA+TGG | + | chr7.1:17218291-17218310 | None:intergenic | 25.0% |
| ! | AGTGCAGAAAAACAAAATTA+GGG | - | chr7.1:17219216-17219235 | MS.gene38772:intron | 25.0% |
| ! | ATAAATATTGGATCAACCTT+TGG | + | chr7.1:17220368-17220387 | None:intergenic | 25.0% |
| ! | TAAATGGCCACATTAAATAT+AGG | + | chr7.1:17218570-17218589 | None:intergenic | 25.0% |
| ! | TAATAACAGATATGGTTAGT+TGG | - | chr7.1:17220486-17220505 | MS.gene38772:CDS | 25.0% |
| ! | TACGATGGTAATATCTAAAT+GGG | + | chr7.1:17219319-17219338 | None:intergenic | 25.0% |
| ! | TACTTAGCACTAATAAAGTA+TGG | - | chr7.1:17220869-17220888 | MS.gene38772:CDS | 25.0% |
| ! | TCTAATGATCAAAGTAATAG+AGG | + | chr7.1:17219495-17219514 | None:intergenic | 25.0% |
| ! | TGAGTAATTAGACCTAAATT+TGG | + | chr7.1:17218350-17218369 | None:intergenic | 25.0% |
| ! | TTACGATGGTAATATCTAAA+TGG | + | chr7.1:17219320-17219339 | None:intergenic | 25.0% |
| ! | TTGAAGATAAAAGTTGTAGA+TGG | - | chr7.1:17220009-17220028 | MS.gene38772:intron | 25.0% |
| ! | TTTATGCAAGAAAAATCTAC+AGG | - | chr7.1:17220137-17220156 | MS.gene38772:intron | 25.0% |
| !! | ACAACTTTTATCTTCAATCT+TGG | + | chr7.1:17220006-17220025 | None:intergenic | 25.0% |
| !! | ATTGATTTCATGAACAACAT+GGG | - | chr7.1:17218134-17218153 | MS.gene38772:CDS | 25.0% |
| !! | ATTTTCTCATTTTCTTTGGA+GGG | + | chr7.1:17220581-17220600 | None:intergenic | 25.0% |
| !! | CAACATTTTCTCATTTTCTT+TGG | + | chr7.1:17220585-17220604 | None:intergenic | 25.0% |
| !! | CAACTTTTATCTTCAATCTT+GGG | + | chr7.1:17220005-17220024 | None:intergenic | 25.0% |
| !! | CCTCTAAAAATCATTTACAT+AGG | + | chr7.1:17219532-17219551 | None:intergenic | 25.0% |
| !!! | AATCAAACTTTGTTTTAGCA+GGG | + | chr7.1:17218893-17218912 | None:intergenic | 25.0% |
| !!! | CCTATGTAAATGATTTTTAG+AGG | - | chr7.1:17219529-17219548 | MS.gene38772:intron | 25.0% |
| !!! | TAATCAAACTTTGTTTTAGC+AGG | + | chr7.1:17218894-17218913 | None:intergenic | 25.0% |
| AACATCTGTGGATTTATCTA+CGG | + | chr7.1:17218407-17218426 | None:intergenic | 30.0% | |
| AATGATCAAAGTAATAGAGG+AGG | + | chr7.1:17219492-17219511 | None:intergenic | 30.0% | |
| ACCTGAAATACATATCTCTA+AGG | + | chr7.1:17219588-17219607 | None:intergenic | 30.0% | |
| ACTGTGAACTTTATATTCGA+AGG | - | chr7.1:17219977-17219996 | MS.gene38772:intron | 30.0% | |
| AGCATATAGCACATTGTAAA+TGG | + | chr7.1:17218586-17218605 | None:intergenic | 30.0% | |
| ATACTTCAAAAGTGGAAAGA+TGG | + | chr7.1:17218198-17218217 | None:intergenic | 30.0% | |
| ATTATAGAGGCTGAGTTAAA+TGG | - | chr7.1:17219417-17219436 | MS.gene38772:intron | 30.0% | |
| CAAGATTAGAACACTATGAA+AGG | - | chr7.1:17218956-17218975 | MS.gene38772:CDS | 30.0% | |
| CAGTGCAGAAAAACAAAATT+AGG | - | chr7.1:17219215-17219234 | MS.gene38772:intron | 30.0% | |
| CATATTGATAAATTGCTAGC+AGG | - | chr7.1:17220256-17220275 | MS.gene38772:intron | 30.0% | |
| CCATAAATGTAGTCATAGAT+AGG | + | chr7.1:17218382-17218401 | None:intergenic | 30.0% | |
| CCTATCTATGACTACATTTA+TGG | - | chr7.1:17218379-17218398 | MS.gene38772:CDS | 30.0% | |
| GATTGAAGAGACAATTATAG+AGG | - | chr7.1:17219404-17219423 | MS.gene38772:intron | 30.0% | |
| GCTTAAGCATATATATGCAA+AGG | - | chr7.1:17220183-17220202 | MS.gene38772:intron | 30.0% | |
| GTAACATTGTAAACTTACGA+TGG | + | chr7.1:17218233-17218252 | None:intergenic | 30.0% | |
| GTTCATCAAAAAATCTTCTG+TGG | - | chr7.1:17218085-17218104 | MS.gene38772:CDS | 30.0% | |
| TATGAGAGATACTTCAAAAG+TGG | + | chr7.1:17218206-17218225 | None:intergenic | 30.0% | |
| TCCATCTATCAATTACGTTT+AGG | - | chr7.1:17218502-17218521 | MS.gene38772:CDS | 30.0% | |
| TGTGAATTCATGAATGTAGT+AGG | + | chr7.1:17220639-17220658 | None:intergenic | 30.0% | |
| TTAATCAGAGATTCATACAC+TGG | + | chr7.1:17219713-17219732 | None:intergenic | 30.0% | |
| ! | CAATCAAGTTGTTCAATGTT+AGG | + | chr7.1:17219389-17219408 | None:intergenic | 30.0% |
| ! | CATTTTCTCATTTTCTTTGG+AGG | + | chr7.1:17220582-17220601 | None:intergenic | 30.0% |
| ! | TTCAAATTTTGTATTCTCCG+TGG | - | chr7.1:17218740-17218759 | MS.gene38772:intron | 30.0% |
| !! | AAGTCTAGGACTTTTAAATC+AGG | - | chr7.1:17219452-17219471 | MS.gene38772:intron | 30.0% |
| !! | CATACTTGTGTTTTGAATCT+TGG | + | chr7.1:17218688-17218707 | None:intergenic | 30.0% |
| !! | CATTGATTTCATGAACAACA+TGG | - | chr7.1:17218133-17218152 | MS.gene38772:CDS | 30.0% |
| !! | TACAAGGTCGCTATTTTATA+GGG | - | chr7.1:17219276-17219295 | MS.gene38772:intron | 30.0% |
| !! | TACAAGGTCGCTATTTTATA+GGG | + | chr7.1:17219295-17219276 | None:intergenic | 30.0% |
| !! | TCAACCTTTGGAATATTAAC+CGG | + | chr7.1:17220356-17220375 | None:intergenic | 30.0% |
| !! | TTACAAGGTCGCTATTTTAT+AGG | - | chr7.1:17219275-17219294 | MS.gene38772:intron | 30.0% |
| !! | TTACAAGGTCGCTATTTTAT+AGG | + | chr7.1:17219294-17219275 | None:intergenic | 30.0% |
| !! | TTTTCTCATTTTCTTTGGAG+GGG | + | chr7.1:17220580-17220599 | None:intergenic | 30.0% |
| AAATCAAGCGTGTATTACGA+TGG | + | chr7.1:17219334-17219353 | None:intergenic | 35.0% | |
| AAGATGGACAAGAGTTTCTT+AGG | + | chr7.1:17218182-17218201 | None:intergenic | 35.0% | |
| AAGTAGGGACTAAACTTACA+AGG | - | chr7.1:17219260-17219279 | MS.gene38772:intron | 35.0% | |
| AAGTAGGGACTAAACTTACA+AGG | + | chr7.1:17219279-17219260 | None:intergenic | 35.0% | |
| AGCTTAAAGAGCTTGAACAA+AGG | - | chr7.1:17220300-17220319 | MS.gene38772:intron | 35.0% | |
| AGGTACCATTTAGATGTTTG+AGG | + | chr7.1:17218550-17218569 | None:intergenic | 35.0% | |
| ATGATCTCAAGTTACAGTGT+TGG | - | chr7.1:17218656-17218675 | MS.gene38772:CDS | 35.0% | |
| ATTGATAAATTGCTAGCAGG+TGG | - | chr7.1:17220259-17220278 | MS.gene38772:intron | 35.0% | |
| CATTGCATCACACCAAATTT+AGG | - | chr7.1:17218335-17218354 | MS.gene38772:intron | 35.0% | |
| CCAATCCTCAAACATCTAAA+TGG | - | chr7.1:17218542-17218561 | MS.gene38772:intron | 35.0% | |
| CCATTTAGATGTTTGAGGAT+TGG | + | chr7.1:17218545-17218564 | None:intergenic | 35.0% | |
| CCTATCTAAATCATTCTCCA+CGG | + | chr7.1:17218760-17218779 | None:intergenic | 35.0% | |
| CGTGGAGAATGATTTAGATA+GGG | - | chr7.1:17218758-17218777 | MS.gene38772:intron | 35.0% | |
| CTGTAACTTGAGATCATTGA+AGG | + | chr7.1:17218653-17218672 | None:intergenic | 35.0% | |
| GAACCTGTGGAAATATATCA+AGG | + | chr7.1:17218311-17218330 | None:intergenic | 35.0% | |
| GCCTAAACGTAATTGATAGA+TGG | + | chr7.1:17218506-17218525 | None:intergenic | 35.0% | |
| GCCTTAGAGATATGTATTTC+AGG | - | chr7.1:17219584-17219603 | MS.gene38772:CDS | 35.0% | |
| GCTTAAAGAGCTTGAACAAA+GGG | - | chr7.1:17220301-17220320 | MS.gene38772:intron | 35.0% | |
| GGTTTCATATGTAACATCTG+TGG | + | chr7.1:17218419-17218438 | None:intergenic | 35.0% | |
| GTGTTGAACAACATTCCTAA+AGG | - | chr7.1:17220054-17220073 | MS.gene38772:intron | 35.0% | |
| TCTCCTTGATATATTTCCAC+AGG | - | chr7.1:17218305-17218324 | MS.gene38772:intron | 35.0% | |
| TGTGCTATATGCTTATGACA+TGG | - | chr7.1:17218593-17218612 | MS.gene38772:intron | 35.0% | |
| TTAACGTTCAGTGAATCTTG+AGG | - | chr7.1:17219755-17219774 | MS.gene38772:intron | 35.0% | |
| TTGCAAAGTTTAGGTGAGTT+GGG | + | chr7.1:17219810-17219829 | None:intergenic | 35.0% | |
| TTTAGATGTTTGAGGATTGG+AGG | + | chr7.1:17218542-17218561 | None:intergenic | 35.0% | |
| ! | ATGGTTAGTTGGAGATGAAT+GGG | - | chr7.1:17220497-17220516 | MS.gene38772:CDS | 35.0% |
| ! | CTTGCATAAAGCATTAGCAA+TGG | + | chr7.1:17220127-17220146 | None:intergenic | 35.0% |
| ! | GGAATAACTCATGCTTTAGA+AGG | - | chr7.1:17220817-17220836 | MS.gene38772:CDS | 35.0% |
| ! | TATGGTTAGTTGGAGATGAA+TGG | - | chr7.1:17220496-17220515 | MS.gene38772:CDS | 35.0% |
| ! | TTCACCGGTTAATATTCCAA+AGG | - | chr7.1:17220349-17220368 | MS.gene38772:CDS | 35.0% |
| ! | TTGTGAGAATCTTTAGAGGT+TGG | + | chr7.1:17220918-17220937 | None:intergenic | 35.0% |
| !! | AGCACTTGATTTGTTCCTTT+AGG | + | chr7.1:17220072-17220091 | None:intergenic | 35.0% |
| !! | TAACTCATGCTTTAGAAGGA+TGG | - | chr7.1:17220821-17220840 | MS.gene38772:CDS | 35.0% |
| AACCTCATTGATGAGACCAA+AGG | - | chr7.1:17218435-17218454 | MS.gene38772:CDS | 40.0% | |
| ACAAATCAAGTGCTTCTTCG+AGG | - | chr7.1:17220078-17220097 | MS.gene38772:intron | 40.0% | |
| CAAGAAGAGTTATGAGTGCA+TGG | - | chr7.1:17220785-17220804 | MS.gene38772:CDS | 40.0% | |
| CATGAATTCACACTCTTGTG+AGG | - | chr7.1:17220647-17220666 | MS.gene38772:CDS | 40.0% | |
| CATGCACTCATAACTCTTCT+TGG | + | chr7.1:17220787-17220806 | None:intergenic | 40.0% | |
| CCGTGGAGAATGATTTAGAT+AGG | - | chr7.1:17218757-17218776 | MS.gene38772:intron | 40.0% | |
| GAACAAAGGGTCATCACAAA+AGG | - | chr7.1:17220314-17220333 | MS.gene38772:intron | 40.0% | |
| GCAGGTGGTTGTATTGTATA+AGG | - | chr7.1:17220274-17220293 | MS.gene38772:intron | 40.0% | |
| GGAGCAAAGGTTATAAGTCT+AGG | - | chr7.1:17219438-17219457 | MS.gene38772:intron | 40.0% | |
| GTTGCAAAGTTTAGGTGAGT+TGG | + | chr7.1:17219811-17219830 | None:intergenic | 40.0% | |
| TCTTCGAGGCAAGTTCAATA+AGG | - | chr7.1:17220092-17220111 | MS.gene38772:intron | 40.0% | |
| TCTTCTGTGGCTGCATTATA+TGG | - | chr7.1:17218098-17218117 | MS.gene38772:CDS | 40.0% | |
| TTGCTTCTACCACTTTACAC+CGG | - | chr7.1:17220602-17220621 | MS.gene38772:CDS | 40.0% | |
| TTTGTTAAGTGCACCACATC+AGG | + | chr7.1:17218466-17218485 | None:intergenic | 40.0% | |
| ! | AGGAAACTTAGCTCTTTCAC+CGG | - | chr7.1:17220334-17220353 | MS.gene38772:CDS | 40.0% |
| ! | TGGCTTGTGAGAATCTTTAG+AGG | + | chr7.1:17220922-17220941 | None:intergenic | 40.0% |
| !! | ATTTGGTGTGATGCAATGAG+TGG | + | chr7.1:17218333-17218352 | None:intergenic | 40.0% |
| !! | GAGCAAATGAAAGCATCAGA+AGG | - | chr7.1:17220528-17220547 | MS.gene38772:CDS | 40.0% |
| !! | GTTGTTTCTGCATGCATCAA+AGG | + | chr7.1:17219945-17219964 | None:intergenic | 40.0% |
| CTCCTTTGGTCTCATCAATG+AGG | + | chr7.1:17218440-17218459 | None:intergenic | 45.0% | |
| GGCTGAGTTAAATGGAGCAA+AGG | - | chr7.1:17219425-17219444 | MS.gene38772:intron | 45.0% | |
| GTAGTAGGAGTGATCATTGC+CGG | + | chr7.1:17220624-17220643 | None:intergenic | 45.0% | |
| GTATAGTGTCTCCACACTCA+TGG | + | chr7.1:17220852-17220871 | None:intergenic | 45.0% | |
| TCAACACAATTGCAGCAGCT+AGG | + | chr7.1:17220041-17220060 | None:intergenic | 45.0% | |
| TCCAAGAGTTCATCAAGGTC+AGG | + | chr7.1:17219786-17219805 | None:intergenic | 45.0% | |
| TCCTGACCTTGATGAACTCT+TGG | - | chr7.1:17219782-17219801 | MS.gene38772:intron | 45.0% | |
| TGATCATTGCCGGTGTAAAG+TGG | + | chr7.1:17220614-17220633 | None:intergenic | 45.0% | |
| TGGGAAGCAAGTATTCGTCA+TGG | - | chr7.1:17220889-17220908 | MS.gene38772:CDS | 45.0% | |
| TGGGTTCCAAGAGTTCATCA+AGG | + | chr7.1:17219791-17219810 | None:intergenic | 45.0% | |
| ! | TTTGGAGGGGAGTGTGAAAA+TGG | + | chr7.1:17220567-17220586 | None:intergenic | 45.0% |
| !!! | AAAAAAGTTTTATTTTTTTT+AGG | - | chr7.1:17219835-17219854 | MS.gene38772:intron | 5.0% |
| !!! | ATAAGTAAATTTTTTTTATA+GGG | + | chr7.1:17218861-17218880 | None:intergenic | 5.0% |
| !!! | TATAAGTAAATTTTTTTTAT+AGG | + | chr7.1:17218862-17218881 | None:intergenic | 5.0% |
| ACCAAAGGAGTCACCTGATG+TGG | - | chr7.1:17218450-17218469 | MS.gene38772:CDS | 50.0% | |
| ACCACATCAGGTGACTCCTT+TGG | + | chr7.1:17218454-17218473 | None:intergenic | 50.0% | |
| ATGAGTGCATGGCGTATTGC+TGG | - | chr7.1:17220796-17220815 | MS.gene38772:CDS | 50.0% | |
| GATGCAATGAGTGGAACCTG+TGG | + | chr7.1:17218324-17218343 | None:intergenic | 50.0% | |
| GGATGGAATGACCATGAGTG+TGG | - | chr7.1:17220838-17220857 | MS.gene38772:CDS | 50.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.1 | gene | 17218071 | 17220948 | 17218071 | ID=MS.gene38772 |
| chr7.1 | mRNA | 17218071 | 17220948 | 17218071 | ID=MS.gene38772.t1;Parent=MS.gene38772 |
| chr7.1 | exon | 17220785 | 17220948 | 17220785 | ID=MS.gene38772.t1.exon1;Parent=MS.gene38772.t1 |
| chr7.1 | CDS | 17220785 | 17220948 | 17220785 | ID=cds.MS.gene38772.t1;Parent=MS.gene38772.t1 |
| chr7.1 | exon | 17220317 | 17220692 | 17220317 | ID=MS.gene38772.t1.exon2;Parent=MS.gene38772.t1 |
| chr7.1 | CDS | 17220317 | 17220692 | 17220317 | ID=cds.MS.gene38772.t1;Parent=MS.gene38772.t1 |
| chr7.1 | exon | 17219546 | 17219653 | 17219546 | ID=MS.gene38772.t1.exon3;Parent=MS.gene38772.t1 |
| chr7.1 | CDS | 17219546 | 17219653 | 17219546 | ID=cds.MS.gene38772.t1;Parent=MS.gene38772.t1 |
| chr7.1 | exon | 17218861 | 17219061 | 17218861 | ID=MS.gene38772.t1.exon4;Parent=MS.gene38772.t1 |
| chr7.1 | CDS | 17218861 | 17219061 | 17218861 | ID=cds.MS.gene38772.t1;Parent=MS.gene38772.t1 |
| chr7.1 | exon | 17218649 | 17218741 | 17218649 | ID=MS.gene38772.t1.exon5;Parent=MS.gene38772.t1 |
| chr7.1 | CDS | 17218649 | 17218741 | 17218649 | ID=cds.MS.gene38772.t1;Parent=MS.gene38772.t1 |
| chr7.1 | exon | 17218351 | 17218524 | 17218351 | ID=MS.gene38772.t1.exon6;Parent=MS.gene38772.t1 |
| chr7.1 | CDS | 17218351 | 17218524 | 17218351 | ID=cds.MS.gene38772.t1;Parent=MS.gene38772.t1 |
| chr7.1 | exon | 17218071 | 17218244 | 17218071 | ID=MS.gene38772.t1.exon7;Parent=MS.gene38772.t1 |
| chr7.1 | CDS | 17218071 | 17218244 | 17218071 | ID=cds.MS.gene38772.t1;Parent=MS.gene38772.t1 |
| Gene Sequence |
| Protein sequence |
