Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene41964.t1 | XP_024630422.1 | 76.6 | 461 | 102 | 2 | 1 | 455 | 1 | 461 | 6.00E-206 | 726.9 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene41964.t1 | Q8GT20 | 65.0 | 457 | 155 | 3 | 2 | 455 | 6 | 460 | 3.6e-175 | 615.9 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene41964.t1 | A0A072VG31 | 76.2 | 458 | 106 | 1 | 1 | 455 | 1 | 458 | 8.9e-204 | 719.2 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene054235 | MS.gene41964 | 0.968545 | 7.88E-129 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|---|---|
MS.gene38706 | MS.gene41964 | PPI |
MS.gene41964 | MS.gene012961 | PPI |
MS.gene32934 | MS.gene41964 | PPI |
MS.gene046246 | MS.gene41964 | PPI |
MS.gene012960 | MS.gene41964 | PPI |
MS.gene38704 | MS.gene41964 | PPI |
MS.gene41964 | MS.gene66891 | PPI |
MS.gene012957 | MS.gene41964 | PPI |
MS.gene41964 | MS.gene38703 | PPI |
MS.gene38361 | MS.gene41964 | PPI |
MS.gene41964 | MS.gene039597 | PPI |
MS.gene38701 | MS.gene41964 | PPI |
MS.gene41964 | MS.gene32933 | PPI |
MS.gene038905 | MS.gene41964 | PPI |
MS.gene38700 | MS.gene41964 | PPI |
MS.gene38365 | MS.gene41964 | PPI |
MS.gene012965 | MS.gene41964 | PPI |
MS.gene95242 | MS.gene41964 | PPI |
MS.gene41964 | MS.gene38359 | PPI |
MS.gene32936 | MS.gene41964 | PPI |
MS.gene069436 | MS.gene41964 | PPI |
MS.gene32938 | MS.gene41964 | PPI |
MS.gene38362 | MS.gene41964 | PPI |
MS.gene41964 | MS.gene38699 | PPI |
MS.gene41964 | MS.gene012959 | PPI |
MS.gene38363 | MS.gene41964 | PPI |
MS.gene41964 | MS.gene042317 | PPI |
MS.gene41964 | MS.gene38702 | PPI |
MS.gene069321 | MS.gene41964 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene41964.t1 | MTR_1g040175 | 76.201 | 458 | 106 | 1 | 1 | 455 | 1 | 458 | 0.0 | 732 |
MS.gene41964.t1 | MTR_1g040215 | 73.970 | 461 | 114 | 2 | 1 | 455 | 1 | 461 | 0.0 | 711 |
MS.gene41964.t1 | MTR_1g040195 | 72.667 | 450 | 97 | 4 | 1 | 449 | 1 | 425 | 0.0 | 656 |
MS.gene41964.t1 | MTR_1g040320 | 70.933 | 461 | 92 | 3 | 1 | 455 | 1 | 425 | 0.0 | 655 |
MS.gene41964.t1 | MTR_1g040315 | 64.444 | 450 | 115 | 5 | 1 | 449 | 1 | 406 | 0.0 | 573 |
MS.gene41964.t1 | MTR_7g114550 | 55.773 | 459 | 193 | 5 | 2 | 455 | 3 | 456 | 0.0 | 529 |
MS.gene41964.t1 | MTR_7g114560 | 56.152 | 447 | 186 | 5 | 5 | 446 | 6 | 447 | 0.0 | 515 |
MS.gene41964.t1 | MTR_7g114520 | 55.629 | 453 | 185 | 6 | 5 | 448 | 7 | 452 | 1.43e-180 | 513 |
MS.gene41964.t1 | MTR_7g114470 | 56.054 | 446 | 190 | 4 | 5 | 446 | 7 | 450 | 1.65e-178 | 507 |
MS.gene41964.t1 | MTR_5g076700 | 55.281 | 445 | 194 | 4 | 5 | 446 | 6 | 448 | 1.93e-177 | 504 |
MS.gene41964.t1 | MTR_7g114490 | 56.713 | 432 | 179 | 5 | 5 | 432 | 6 | 433 | 2.02e-172 | 493 |
MS.gene41964.t1 | MTR_1g081660 | 54.402 | 443 | 197 | 5 | 4 | 444 | 13 | 452 | 8.08e-166 | 475 |
MS.gene41964.t1 | MTR_0042s0190 | 72.727 | 297 | 75 | 2 | 165 | 455 | 1 | 297 | 3.96e-159 | 452 |
MS.gene41964.t1 | MTR_0042s0190 | 71.121 | 232 | 61 | 2 | 230 | 455 | 1 | 232 | 1.51e-115 | 338 |
MS.gene41964.t1 | MTR_3g035000 | 73.874 | 222 | 31 | 3 | 199 | 419 | 43 | 238 | 2.59e-108 | 323 |
MS.gene41964.t1 | MTR_7g114510 | 51.447 | 311 | 134 | 5 | 147 | 448 | 8 | 310 | 2.72e-101 | 305 |
MS.gene41964.t1 | MTR_0502s0010 | 58.436 | 243 | 93 | 4 | 100 | 338 | 1 | 239 | 6.29e-96 | 289 |
MS.gene41964.t1 | MTR_0042s0230 | 82.313 | 147 | 26 | 0 | 1 | 147 | 1 | 147 | 2.40e-86 | 261 |
MS.gene41964.t1 | MTR_7g027175 | 35.509 | 383 | 235 | 8 | 14 | 391 | 21 | 396 | 1.08e-73 | 238 |
MS.gene41964.t1 | MTR_8g096530 | 33.753 | 397 | 249 | 9 | 1 | 392 | 1 | 388 | 1.74e-73 | 238 |
MS.gene41964.t1 | MTR_8g039950 | 82.812 | 128 | 22 | 0 | 1 | 128 | 1 | 128 | 1.25e-72 | 225 |
MS.gene41964.t1 | MTR_3g098980 | 31.469 | 429 | 275 | 10 | 9 | 432 | 14 | 428 | 2.60e-72 | 234 |
MS.gene41964.t1 | MTR_7g114420 | 42.807 | 285 | 131 | 4 | 165 | 446 | 1 | 256 | 1.26e-70 | 225 |
MS.gene41964.t1 | MTR_7g114500 | 62.667 | 150 | 56 | 0 | 2 | 151 | 3 | 152 | 4.76e-67 | 211 |
MS.gene41964.t1 | MTR_3g051790 | 60.959 | 146 | 57 | 0 | 2 | 147 | 6 | 151 | 7.28e-60 | 194 |
MS.gene41964.t1 | MTR_1g053315 | 33.418 | 392 | 241 | 11 | 17 | 391 | 26 | 414 | 4.45e-54 | 187 |
MS.gene41964.t1 | MTR_3g112180 | 33.165 | 395 | 235 | 13 | 12 | 391 | 14 | 394 | 1.17e-52 | 184 |
MS.gene41964.t1 | MTR_4g055170 | 30.248 | 443 | 286 | 13 | 16 | 440 | 19 | 456 | 4.37e-50 | 177 |
MS.gene41964.t1 | MTR_2g105330 | 28.750 | 400 | 264 | 9 | 5 | 392 | 1 | 391 | 3.32e-48 | 171 |
MS.gene41964.t1 | MTR_2g064495 | 28.750 | 400 | 264 | 9 | 5 | 392 | 1 | 391 | 1.49e-47 | 169 |
MS.gene41964.t1 | MTR_4g007540 | 29.744 | 390 | 254 | 9 | 16 | 392 | 10 | 392 | 2.18e-47 | 169 |
MS.gene41964.t1 | MTR_8g075610 | 29.117 | 419 | 267 | 11 | 16 | 420 | 1 | 403 | 6.31e-47 | 167 |
MS.gene41964.t1 | MTR_3g071320 | 30.296 | 439 | 271 | 15 | 16 | 435 | 12 | 434 | 5.86e-45 | 162 |
MS.gene41964.t1 | MTR_7g084940 | 27.792 | 385 | 259 | 10 | 16 | 391 | 23 | 397 | 9.55e-38 | 143 |
MS.gene41964.t1 | MTR_3g465930 | 27.876 | 452 | 293 | 14 | 16 | 440 | 17 | 462 | 3.72e-37 | 142 |
MS.gene41964.t1 | MTR_4g127650 | 28.777 | 417 | 252 | 14 | 8 | 392 | 11 | 414 | 3.97e-37 | 141 |
MS.gene41964.t1 | MTR_7g056087 | 28.345 | 441 | 276 | 15 | 16 | 434 | 11 | 433 | 9.42e-37 | 140 |
MS.gene41964.t1 | MTR_3g026950 | 25.553 | 407 | 265 | 10 | 17 | 392 | 10 | 409 | 1.43e-36 | 140 |
MS.gene41964.t1 | MTR_7g086000 | 28.960 | 404 | 244 | 16 | 17 | 385 | 12 | 407 | 5.32e-36 | 139 |
MS.gene41964.t1 | MTR_7g085990 | 27.527 | 465 | 269 | 17 | 16 | 434 | 9 | 451 | 6.14e-36 | 138 |
MS.gene41964.t1 | MTR_7g110610 | 26.650 | 409 | 232 | 12 | 5 | 404 | 1 | 350 | 8.66e-36 | 136 |
MS.gene41964.t1 | MTR_6g053810 | 27.619 | 420 | 252 | 15 | 57 | 442 | 64 | 465 | 1.11e-35 | 137 |
MS.gene41964.t1 | MTR_3g465990 | 26.915 | 457 | 287 | 17 | 16 | 440 | 17 | 458 | 9.81e-35 | 135 |
MS.gene41964.t1 | MTR_7g085930 | 27.163 | 416 | 257 | 14 | 16 | 392 | 13 | 421 | 1.27e-34 | 135 |
MS.gene41964.t1 | MTR_7g084910 | 27.431 | 401 | 254 | 13 | 1 | 391 | 11 | 384 | 2.38e-34 | 133 |
MS.gene41964.t1 | MTR_3g465910 | 30.000 | 350 | 219 | 11 | 16 | 348 | 17 | 357 | 2.97e-34 | 135 |
MS.gene41964.t1 | MTR_3g465980 | 27.632 | 456 | 285 | 17 | 16 | 440 | 17 | 458 | 1.19e-33 | 132 |
MS.gene41964.t1 | MTR_2g015430 | 28.955 | 335 | 229 | 7 | 59 | 387 | 53 | 384 | 4.17e-32 | 127 |
MS.gene41964.t1 | MTR_3g049150 | 26.406 | 409 | 251 | 13 | 17 | 390 | 10 | 403 | 6.07e-32 | 127 |
MS.gene41964.t1 | MTR_3g465880 | 28.850 | 461 | 280 | 17 | 16 | 440 | 17 | 465 | 9.07e-32 | 127 |
MS.gene41964.t1 | MTR_4g088765 | 67.089 | 79 | 26 | 0 | 1 | 79 | 1 | 79 | 1.18e-30 | 115 |
MS.gene41964.t1 | MTR_3g465950 | 29.586 | 338 | 216 | 10 | 16 | 337 | 17 | 348 | 1.93e-30 | 123 |
MS.gene41964.t1 | MTR_4g097090 | 27.913 | 412 | 242 | 14 | 17 | 390 | 17 | 411 | 3.44e-30 | 122 |
MS.gene41964.t1 | MTR_5g090830 | 26.492 | 419 | 260 | 15 | 7 | 389 | 8 | 414 | 2.11e-27 | 114 |
MS.gene41964.t1 | MTR_5g090810 | 26.253 | 419 | 261 | 15 | 7 | 389 | 8 | 414 | 1.55e-26 | 112 |
MS.gene41964.t1 | MTR_4g013050 | 23.990 | 396 | 242 | 11 | 17 | 392 | 12 | 368 | 1.34e-25 | 108 |
MS.gene41964.t1 | MTR_5g084870 | 23.451 | 452 | 300 | 16 | 15 | 449 | 9 | 431 | 3.95e-24 | 104 |
MS.gene41964.t1 | MTR_3g465870 | 29.153 | 295 | 188 | 9 | 16 | 295 | 19 | 307 | 9.37e-24 | 103 |
MS.gene41964.t1 | MTR_3g070170 | 26.807 | 429 | 243 | 16 | 52 | 432 | 54 | 459 | 1.16e-23 | 103 |
MS.gene41964.t1 | MTR_3g101930 | 28.926 | 363 | 214 | 17 | 64 | 397 | 70 | 417 | 5.04e-21 | 95.5 |
MS.gene41964.t1 | MTR_5g090880 | 24.365 | 394 | 246 | 16 | 41 | 397 | 49 | 427 | 6.50e-21 | 95.5 |
MS.gene41964.t1 | MTR_3g101900 | 26.810 | 373 | 224 | 15 | 61 | 402 | 63 | 417 | 7.03e-21 | 95.1 |
MS.gene41964.t1 | MTR_8g079950 | 23.195 | 457 | 299 | 16 | 15 | 448 | 9 | 436 | 9.69e-21 | 94.7 |
MS.gene41964.t1 | MTR_3g450710 | 24.444 | 450 | 250 | 19 | 48 | 445 | 47 | 458 | 4.48e-20 | 92.8 |
MS.gene41964.t1 | MTR_3g086020 | 22.025 | 395 | 265 | 14 | 9 | 390 | 5 | 369 | 1.02e-19 | 91.3 |
MS.gene41964.t1 | MTR_4g022800 | 25.000 | 400 | 253 | 18 | 23 | 395 | 25 | 404 | 3.19e-19 | 90.1 |
MS.gene41964.t1 | MTR_7g026860 | 25.612 | 449 | 286 | 22 | 8 | 432 | 3 | 427 | 8.08e-19 | 89.0 |
MS.gene41964.t1 | MTR_8g041770 | 23.529 | 408 | 276 | 13 | 12 | 404 | 20 | 406 | 1.26e-18 | 88.2 |
MS.gene41964.t1 | MTR_4g094838 | 22.500 | 440 | 278 | 16 | 23 | 439 | 29 | 428 | 1.70e-18 | 87.8 |
MS.gene41964.t1 | MTR_3g102020 | 26.551 | 403 | 246 | 17 | 24 | 397 | 31 | 412 | 5.22e-18 | 86.7 |
MS.gene41964.t1 | MTR_8g467590 | 23.261 | 460 | 296 | 19 | 15 | 446 | 9 | 439 | 6.87e-18 | 86.3 |
MS.gene41964.t1 | MTR_0190s0020 | 23.636 | 440 | 268 | 18 | 23 | 432 | 30 | 431 | 8.41e-18 | 85.9 |
MS.gene41964.t1 | MTR_4g022670 | 23.041 | 434 | 282 | 17 | 23 | 432 | 25 | 430 | 1.88e-17 | 84.7 |
MS.gene41964.t1 | MTR_4g022290 | 23.558 | 416 | 273 | 17 | 46 | 432 | 35 | 434 | 4.56e-17 | 83.6 |
MS.gene41964.t1 | MTR_4g022720 | 22.646 | 393 | 266 | 13 | 23 | 397 | 25 | 397 | 5.38e-17 | 83.2 |
MS.gene41964.t1 | MTR_3g102010 | 26.379 | 417 | 228 | 20 | 24 | 397 | 32 | 412 | 2.68e-16 | 81.3 |
MS.gene41964.t1 | MTR_7g114417 | 66.667 | 51 | 16 | 1 | 89 | 138 | 29 | 79 | 2.70e-16 | 73.9 |
MS.gene41964.t1 | MTR_7g114417 | 65.000 | 40 | 14 | 0 | 2 | 41 | 3 | 42 | 4.61e-12 | 62.0 |
MS.gene41964.t1 | MTR_4g094835 | 22.750 | 400 | 264 | 13 | 57 | 432 | 57 | 435 | 4.58e-16 | 80.5 |
MS.gene41964.t1 | MTR_8g079980 | 22.363 | 474 | 277 | 18 | 15 | 446 | 9 | 433 | 9.24e-16 | 79.3 |
MS.gene41964.t1 | MTR_8g079710 | 23.846 | 390 | 247 | 15 | 23 | 387 | 30 | 394 | 1.65e-15 | 79.0 |
MS.gene41964.t1 | MTR_2g007880 | 23.729 | 413 | 249 | 19 | 13 | 389 | 21 | 403 | 2.24e-15 | 78.6 |
MS.gene41964.t1 | MTR_4g022825 | 25.062 | 403 | 256 | 20 | 56 | 432 | 47 | 429 | 3.91e-15 | 77.8 |
MS.gene41964.t1 | MTR_3g026310 | 25.432 | 405 | 244 | 19 | 64 | 432 | 55 | 437 | 7.66e-14 | 73.6 |
MS.gene41964.t1 | MTR_4g022760 | 25.234 | 321 | 199 | 13 | 23 | 323 | 25 | 324 | 2.08e-13 | 72.0 |
MS.gene41964.t1 | MTR_5g026320 | 24.808 | 391 | 250 | 15 | 22 | 389 | 33 | 402 | 2.99e-12 | 68.9 |
MS.gene41964.t1 | MTR_6g016815 | 28.723 | 188 | 114 | 8 | 43 | 216 | 51 | 232 | 3.00e-12 | 68.6 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene41964.t1 | AT5G17540 | 56.109 | 442 | 184 | 7 | 1 | 437 | 1 | 437 | 1.04e-169 | 485 |
MS.gene41964.t1 | AT3G03480 | 51.936 | 439 | 198 | 8 | 5 | 437 | 15 | 446 | 1.43e-149 | 434 |
MS.gene41964.t1 | AT5G63560 | 34.171 | 398 | 242 | 9 | 1 | 391 | 1 | 385 | 5.34e-75 | 241 |
MS.gene41964.t1 | AT5G41040 | 35.204 | 392 | 236 | 10 | 9 | 391 | 17 | 399 | 7.85e-75 | 241 |
MS.gene41964.t1 | AT5G41040 | 35.204 | 392 | 236 | 10 | 9 | 391 | 33 | 415 | 9.30e-75 | 242 |
MS.gene41964.t1 | AT3G48720 | 32.071 | 396 | 257 | 8 | 1 | 391 | 1 | 389 | 2.03e-74 | 240 |
MS.gene41964.t1 | AT1G27620 | 29.932 | 441 | 270 | 13 | 13 | 437 | 13 | 430 | 8.17e-54 | 186 |
MS.gene41964.t1 | AT1G03390 | 32.824 | 393 | 243 | 11 | 13 | 391 | 26 | 411 | 1.71e-53 | 186 |
MS.gene41964.t1 | AT3G62160 | 31.000 | 400 | 246 | 11 | 5 | 394 | 1 | 380 | 2.91e-48 | 171 |
MS.gene41964.t1 | AT2G40230 | 32.992 | 391 | 234 | 13 | 16 | 390 | 12 | 390 | 4.95e-48 | 171 |
MS.gene41964.t1 | AT2G19070 | 30.617 | 405 | 245 | 12 | 17 | 392 | 12 | 409 | 2.90e-47 | 169 |
MS.gene41964.t1 | AT1G28680 | 29.337 | 392 | 262 | 11 | 6 | 387 | 1 | 387 | 2.21e-44 | 161 |
MS.gene41964.t1 | AT5G48930 | 29.293 | 396 | 248 | 9 | 16 | 392 | 10 | 392 | 2.59e-44 | 160 |
MS.gene41964.t1 | AT1G65450 | 28.821 | 458 | 272 | 17 | 1 | 432 | 12 | 441 | 3.00e-43 | 158 |
MS.gene41964.t1 | AT3G47170 | 28.532 | 361 | 218 | 10 | 7 | 337 | 10 | 360 | 5.03e-41 | 152 |
MS.gene41964.t1 | AT1G28680 | 29.315 | 365 | 244 | 10 | 6 | 361 | 1 | 360 | 1.31e-40 | 150 |
MS.gene41964.t1 | AT2G23510 | 29.374 | 463 | 288 | 16 | 1 | 440 | 5 | 451 | 7.13e-40 | 149 |
MS.gene41964.t1 | AT5G07080 | 29.298 | 413 | 239 | 15 | 7 | 387 | 12 | 403 | 2.69e-39 | 147 |
MS.gene41964.t1 | AT5G57840 | 28.501 | 407 | 252 | 11 | 16 | 397 | 10 | 402 | 5.58e-39 | 146 |
MS.gene41964.t1 | AT2G25150 | 28.319 | 452 | 283 | 14 | 15 | 441 | 19 | 454 | 1.62e-35 | 137 |
MS.gene41964.t1 | AT1G78990 | 27.374 | 358 | 225 | 11 | 62 | 397 | 65 | 409 | 1.01e-26 | 112 |
MS.gene41964.t1 | AT4G15390 | 24.249 | 466 | 306 | 16 | 3 | 446 | 2 | 442 | 3.85e-24 | 104 |
MS.gene41964.t1 | AT4G15390 | 24.249 | 466 | 306 | 16 | 3 | 446 | 2 | 442 | 3.85e-24 | 104 |
MS.gene41964.t1 | AT5G07860 | 27.296 | 392 | 245 | 12 | 64 | 437 | 72 | 441 | 1.04e-23 | 103 |
MS.gene41964.t1 | AT1G32910 | 26.316 | 361 | 230 | 13 | 62 | 397 | 63 | 412 | 1.19e-23 | 103 |
MS.gene41964.t1 | AT1G24420 | 25.219 | 456 | 283 | 16 | 15 | 446 | 11 | 432 | 2.42e-23 | 102 |
MS.gene41964.t1 | AT1G24420 | 25.219 | 456 | 283 | 16 | 15 | 446 | 11 | 432 | 2.42e-23 | 102 |
MS.gene41964.t1 | AT3G50280 | 26.485 | 404 | 250 | 17 | 64 | 441 | 59 | 441 | 6.15e-23 | 101 |
MS.gene41964.t1 | AT5G42830 | 27.315 | 432 | 232 | 16 | 15 | 401 | 23 | 417 | 5.61e-21 | 95.5 |
MS.gene41964.t1 | AT3G26040 | 24.060 | 399 | 256 | 15 | 15 | 390 | 9 | 383 | 2.36e-20 | 93.6 |
MS.gene41964.t1 | AT1G65450 | 26.780 | 295 | 177 | 10 | 158 | 432 | 2 | 277 | 3.02e-20 | 90.9 |
MS.gene41964.t1 | AT1G31490 | 24.444 | 405 | 264 | 14 | 6 | 389 | 3 | 386 | 4.56e-20 | 92.8 |
MS.gene41964.t1 | AT5G07850 | 27.222 | 360 | 232 | 13 | 64 | 401 | 70 | 421 | 1.41e-19 | 91.3 |
MS.gene41964.t1 | AT4G31910 | 28.718 | 390 | 239 | 13 | 64 | 424 | 64 | 443 | 3.05e-19 | 90.5 |
MS.gene41964.t1 | AT5G47980 | 24.454 | 458 | 291 | 18 | 15 | 446 | 11 | 439 | 1.60e-18 | 88.2 |
MS.gene41964.t1 | AT5G16410 | 25.496 | 353 | 220 | 14 | 62 | 390 | 89 | 422 | 2.56e-18 | 87.8 |
MS.gene41964.t1 | AT5G38130 | 25.000 | 400 | 251 | 16 | 23 | 397 | 48 | 423 | 2.60e-18 | 87.4 |
MS.gene41964.t1 | AT3G30280 | 25.652 | 460 | 294 | 18 | 9 | 446 | 6 | 439 | 3.60e-18 | 87.0 |
MS.gene41964.t1 | AT1G24430 | 22.788 | 452 | 295 | 16 | 15 | 446 | 11 | 428 | 6.84e-18 | 85.9 |
MS.gene41964.t1 | AT5G23970 | 23.673 | 452 | 289 | 15 | 15 | 446 | 9 | 424 | 2.36e-17 | 84.3 |
MS.gene41964.t1 | AT5G47950 | 24.197 | 467 | 275 | 20 | 9 | 446 | 6 | 422 | 1.52e-16 | 82.0 |
MS.gene41964.t1 | AT5G67160 | 25.373 | 402 | 261 | 13 | 54 | 437 | 46 | 426 | 2.22e-16 | 81.6 |
MS.gene41964.t1 | AT3G50300 | 25.208 | 361 | 229 | 17 | 64 | 397 | 59 | 405 | 2.71e-14 | 75.1 |
Find 99 sgRNAs with CRISPR-Local
Find 144 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TTTGATGGAGTCACCATTTC+TGG | 0.047035 | 6.4:-18602987 | None:intergenic |
GTTCCTTTGTTGTCTGGTTC+TGG | 0.137058 | 6.4:-18604235 | None:intergenic |
GTCCACCACACTTTCTTCTT+TGG | 0.194806 | 6.4:+18604280 | MS.gene41964:CDS |
CACTCCATTGGTCCTTATTC+AGG | 0.214817 | 6.4:+18603364 | MS.gene41964:CDS |
GGGTCTTTCCCTACCATAAT+TGG | 0.216910 | 6.4:-18603104 | None:intergenic |
GAATTAATAATACCAGATTT+TGG | 0.217590 | 6.4:-18604925 | None:intergenic |
GCAATCAACGGCAGATTTAA+TGG | 0.249643 | 6.4:+18604624 | MS.gene41964:CDS |
TGGAGATGTTGAGTTTGGTT+GGG | 0.290775 | 6.4:+18604717 | MS.gene41964:CDS |
TTACAACTATAATCCAATTA+TGG | 0.303124 | 6.4:+18603091 | MS.gene41964:CDS |
AGTAACCATCTGGTAGAAAT+AGG | 0.335725 | 6.4:-18604480 | None:intergenic |
GATGTTACACGTGCTGGATT+TGG | 0.343125 | 6.4:+18604697 | MS.gene41964:CDS |
TTCCTTTGTTGTCTGGTTCT+GGG | 0.348645 | 6.4:-18604234 | None:intergenic |
AGCACATATATACCTGAATA+AGG | 0.367780 | 6.4:-18603376 | None:intergenic |
GGATTTGGAGATGTTGAGTT+TGG | 0.376608 | 6.4:+18604712 | MS.gene41964:CDS |
GAGCTTCTTTATGATGTTCC+CGG | 0.380046 | 6.4:+18603323 | MS.gene41964:CDS |
TAACTGTGAATAACAGAGAT+TGG | 0.380371 | 6.4:-18602953 | None:intergenic |
AAAGTGGTTCCTTTGTTGTC+TGG | 0.383147 | 6.4:-18604241 | None:intergenic |
AGCATTAATAATCCAAAATC+TGG | 0.390792 | 6.4:+18604913 | MS.gene41964:CDS |
GATGTTAGTCTGAAAGAATT+TGG | 0.397462 | 6.4:+18603266 | MS.gene41964:CDS |
TTGGAGATGTTGAGTTTGGT+TGG | 0.400021 | 6.4:+18604716 | MS.gene41964:CDS |
AGCTCTTGCAAGCAAGGAAA+TGG | 0.404674 | 6.4:-18603305 | None:intergenic |
GTGAAGCACATCTGTAGAAC+CGG | 0.406200 | 6.4:-18603342 | None:intergenic |
CTCTGTTATTCACAGTTAAG+AGG | 0.414938 | 6.4:+18602958 | MS.gene41964:CDS |
GTTCAGTTCATGAGTGCCTT+AGG | 0.419735 | 6.4:+18604103 | MS.gene41964:CDS |
GGCAGATTTAATGGTTATGA+AGG | 0.431417 | 6.4:+18604633 | MS.gene41964:CDS |
GGAGAGGTTGGTTAAAGAGT+TGG | 0.434510 | 6.4:+18604876 | MS.gene41964:CDS |
CGAATTTCCGCCACCTCGGT+GGG | 0.435593 | 6.4:-18604304 | None:intergenic |
AGGTCCTGGTAGGAAACTTA+TGG | 0.438196 | 6.4:+18603199 | MS.gene41964:CDS |
GCATTTCTAAGAATGTCAAC+AGG | 0.440469 | 6.4:-18603125 | None:intergenic |
GGAGATGTTGAGTTTGGTTG+GGG | 0.445390 | 6.4:+18604718 | MS.gene41964:CDS |
AATAAACAAAACACCTTCTC+CGG | 0.448986 | 6.4:-18603231 | None:intergenic |
GCACCATCTCCTCCTTTAGC+TGG | 0.459513 | 6.4:-18604760 | None:intergenic |
CTTTGGCCCCACCGAGGTGG+CGG | 0.469425 | 6.4:+18604297 | MS.gene41964:CDS |
TCCACTTGCTGGTAGATTGA+GGG | 0.472300 | 6.4:+18603175 | MS.gene41964:CDS |
TTGATGGAGTCACCATTTCT+GGG | 0.474728 | 6.4:-18602986 | None:intergenic |
ATCCACTTGCTGGTAGATTG+AGG | 0.475347 | 6.4:+18603174 | MS.gene41964:CDS |
GCGAATTTCCGCCACCTCGG+TGG | 0.476649 | 6.4:-18604305 | None:intergenic |
ACATAGAGTGTTGTTGTAGT+TGG | 0.478934 | 6.4:-18604345 | None:intergenic |
TAAGAGGTGTAACCCAGAAA+TGG | 0.482371 | 6.4:+18602974 | MS.gene41964:CDS |
GTGGTGGACCATGTCGTCTA+AGG | 0.486220 | 6.4:-18604266 | None:intergenic |
AACTGTGAATAACAGAGATT+GGG | 0.490806 | 6.4:-18602952 | None:intergenic |
TTTGAAAACGTATCGACTCT+TGG | 0.492698 | 6.4:-18603052 | None:intergenic |
TATATGAAAGCAAGCATGAC+CGG | 0.494278 | 6.4:-18604788 | None:intergenic |
GTGTCTGATGTTACACGTGC+TGG | 0.496612 | 6.4:+18604691 | MS.gene41964:CDS |
CCCTCGAGATATTTCTCCTA+AGG | 0.500192 | 6.4:-18604119 | None:intergenic |
GCATTACCGTAGTAACCATC+TGG | 0.502489 | 6.4:-18604490 | None:intergenic |
TAAAGAAGCTCTTGCAAGCA+AGG | 0.503205 | 6.4:-18603311 | None:intergenic |
TGATGAGTGCACGTCACTCT+TGG | 0.506820 | 6.4:-18604202 | None:intergenic |
CATACAATCAGCGATGGATC+AGG | 0.512892 | 6.4:+18604076 | MS.gene41964:CDS |
TAGTTGTAAAATTGTATCAC+AGG | 0.515339 | 6.4:-18603077 | None:intergenic |
AAACTTATGGTCGATTGTAC+CGG | 0.516847 | 6.4:+18603212 | MS.gene41964:CDS |
CACCACACAGGTAAAATTGA+CGG | 0.529973 | 6.4:-18604151 | None:intergenic |
ACTATAATCCAATTATGGTA+GGG | 0.538005 | 6.4:+18603096 | MS.gene41964:CDS |
GTTAACCTATTTCTACCAGA+TGG | 0.541287 | 6.4:+18604475 | MS.gene41964:CDS |
AACTATAATCCAATTATGGT+AGG | 0.543908 | 6.4:+18603095 | MS.gene41964:CDS |
AACAAAAGTCATGGAGAGGT+TGG | 0.545328 | 6.4:+18604864 | MS.gene41964:CDS |
TGTTGTTGTAGTTGGTGAGA+TGG | 0.552335 | 6.4:-18604337 | None:intergenic |
AATCCCGACTTATTAAAATA+CGG | 0.553242 | 6.4:-18604661 | None:intergenic |
TGAGTGCACGTCACTCTTGG+TGG | 0.559530 | 6.4:-18604199 | None:intergenic |
GTGTATGGAGGACCAGCTAA+AGG | 0.560497 | 6.4:+18604748 | MS.gene41964:CDS |
CTTCTTTGGCCCCACCGAGG+TGG | 0.564502 | 6.4:+18604294 | MS.gene41964:CDS |
GGAGGAGATGGTGCTAATCC+CGG | 0.565776 | 6.4:+18604769 | MS.gene41964:CDS |
GGTAGATTGAGGGAAGGTCC+TGG | 0.566682 | 6.4:+18603185 | MS.gene41964:CDS |
TCCCTCAATCTACCAGCAAG+TGG | 0.571263 | 6.4:-18603176 | None:intergenic |
GGACCAGCTAAAGGAGGAGA+TGG | 0.572104 | 6.4:+18604757 | MS.gene41964:CDS |
AGATGTGCTTCACACTCCAT+TGG | 0.577754 | 6.4:+18603352 | MS.gene41964:CDS |
TCTGTCGCAGTCACAACTGC+AGG | 0.579941 | 6.4:+18604523 | MS.gene41964:CDS |
TGCCAACAAAAGTCATGGAG+AGG | 0.584364 | 6.4:+18604860 | MS.gene41964:CDS |
TTTCTACCAGATGGTTACTA+CGG | 0.585833 | 6.4:+18604484 | MS.gene41964:CDS |
AAAACTAATTGAAAATCCGT+TGG | 0.586156 | 6.4:+18604546 | MS.gene41964:CDS |
TATACCTGAATAAGGACCAA+TGG | 0.592785 | 6.4:-18603368 | None:intergenic |
ATATGAAAGCAAGCATGACC+GGG | 0.593390 | 6.4:-18604787 | None:intergenic |
GCAGATTTAATGGTTATGAA+GGG | 0.600707 | 6.4:+18604634 | MS.gene41964:CDS |
ATGAATCATACAATCAGCGA+TGG | 0.600874 | 6.4:+18604070 | MS.gene41964:CDS |
AAATCTAATGCATATGCCAA+CGG | 0.602234 | 6.4:-18604562 | None:intergenic |
ATGGTCGATTGTACCGGAGA+AGG | 0.604107 | 6.4:+18603218 | MS.gene41964:CDS |
AGTGCGAATTTCCGCCACCT+CGG | 0.610057 | 6.4:-18604308 | None:intergenic |
TCTTGCAAGCAAGGAAATGG+AGG | 0.610093 | 6.4:-18603302 | None:intergenic |
GTTGTAGTTGGTGAGATGGA+AGG | 0.618120 | 6.4:-18604333 | None:intergenic |
TAAAGAGTATATGCAATCAA+CGG | 0.627598 | 6.4:+18604612 | MS.gene41964:CDS |
GCCTTAGGAGAAATATCTCG+AGG | 0.629011 | 6.4:+18604118 | MS.gene41964:CDS |
TGTTAAAGGAGAGGAAGGTG+TGG | 0.633203 | 6.4:+18604822 | MS.gene41964:CDS |
GAGATGTTGAGTTTGGTTGG+GGG | 0.635927 | 6.4:+18604719 | MS.gene41964:CDS |
GAATTTCCGCCACCTCGGTG+GGG | 0.636804 | 6.4:-18604303 | None:intergenic |
GAGTGCACGTCACTCTTGGT+GGG | 0.638994 | 6.4:-18604198 | None:intergenic |
GATTGAGGGAAGGTCCTGGT+AGG | 0.644152 | 6.4:+18603189 | MS.gene41964:CDS |
TGAAGCACATCTGTAGAACC+GGG | 0.644835 | 6.4:-18603341 | None:intergenic |
TATGGAGGACCAGCTAAAGG+AGG | 0.660636 | 6.4:+18604751 | MS.gene41964:CDS |
TCGACCATAAGTTTCCTACC+AGG | 0.661707 | 6.4:-18603203 | None:intergenic |
GACCCAGAACCAGACAACAA+AGG | 0.662502 | 6.4:+18604232 | MS.gene41964:CDS |
CATTTCTAAGAATGTCAACA+GGG | 0.667645 | 6.4:-18603124 | None:intergenic |
CCTTAGGAGAAATATCTCGA+GGG | 0.670031 | 6.4:+18604119 | MS.gene41964:CDS |
CTTGCTGGTAGATTGAGGGA+AGG | 0.675398 | 6.4:+18603179 | MS.gene41964:CDS |
GGCCAAAGAAGAAAGTGTGG+TGG | 0.676799 | 6.4:-18604282 | None:intergenic |
CAGGTAACACGACTCAAGTG+TGG | 0.681633 | 6.4:+18604025 | MS.gene41964:intron |
AAAAGCTCTCTACACCACAC+AGG | 0.690933 | 6.4:-18604163 | None:intergenic |
TGGGGCCAAAGAAGAAAGTG+TGG | 0.691932 | 6.4:-18604285 | None:intergenic |
GTAACACGACTCAAGTGTGG+TGG | 0.709250 | 6.4:+18604028 | MS.gene41964:CDS |
TTTCTTCTTTGGCCCCACCG+AGG | 0.710876 | 6.4:+18604291 | MS.gene41964:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | AATATAAATAGAAAAATGTT+TGG | + | chr6.4:18603426-18603445 | MS.gene41964:intron | 10.0% |
!! | ACTATTGTAAAAATAAATTA+TGG | + | chr6.4:18603598-18603617 | MS.gene41964:intron | 10.0% |
!! | TATATTTATTATTTAGTGTT+TGG | + | chr6.4:18603865-18603884 | MS.gene41964:intron | 10.0% |
!! | ATATTATGAGAAATGTTATT+TGG | - | chr6.4:18603411-18603430 | None:intergenic | 15.0% |
!!! | ATAGCTTTTAAAAATGTTAA+AGG | + | chr6.4:18604808-18604827 | MS.gene41964:CDS | 15.0% |
!! | AAATTTATACACAACAGTAA+AGG | + | chr6.4:18603984-18604003 | MS.gene41964:intron | 20.0% |
!! | TTACAACTATAATCCAATTA+TGG | + | chr6.4:18603091-18603110 | MS.gene41964:CDS | 20.0% |
!!! | ATAAATATTTTCGTAAGAGA+TGG | - | chr6.4:18603960-18603979 | None:intergenic | 20.0% |
!!! | ATTTGAAACTGTATATTTTC+CGG | - | chr6.4:18603659-18603678 | None:intergenic | 20.0% |
!!! | GAATTAATAATACCAGATTT+TGG | - | chr6.4:18604928-18604947 | None:intergenic | 20.0% |
!!! | TTTTAAAAATGTTAAAGGAG+AGG | + | chr6.4:18604813-18604832 | MS.gene41964:CDS | 20.0% |
! | AAAACTAATTGAAAATCCGT+TGG | + | chr6.4:18604546-18604565 | MS.gene41964:CDS | 25.0% |
! | AACTATAATCCAATTATGGT+AGG | + | chr6.4:18603095-18603114 | MS.gene41964:CDS | 25.0% |
! | AATCCCGACTTATTAAAATA+CGG | - | chr6.4:18604664-18604683 | None:intergenic | 25.0% |
! | ACATGACGAACTAAATAAAT+TGG | - | chr6.4:18603762-18603781 | None:intergenic | 25.0% |
! | ACTATAATCCAATTATGGTA+GGG | + | chr6.4:18603096-18603115 | MS.gene41964:CDS | 25.0% |
! | AGCATTAATAATCCAAAATC+TGG | + | chr6.4:18604913-18604932 | MS.gene41964:CDS | 25.0% |
! | CATGACGAACTAAATAAATT+GGG | - | chr6.4:18603761-18603780 | None:intergenic | 25.0% |
! | TAACGTAACTATATTCAAGA+GGG | + | chr6.4:18603833-18603852 | MS.gene41964:intron | 25.0% |
! | TAGTTGTAAAATTGTATCAC+AGG | - | chr6.4:18603080-18603099 | None:intergenic | 25.0% |
!! | AAATCATCACTGCATATTTT+TGG | + | chr6.4:18604371-18604390 | MS.gene41964:CDS | 25.0% |
!! | TAAAGAGTATATGCAATCAA+CGG | + | chr6.4:18604612-18604631 | MS.gene41964:CDS | 25.0% |
!!! | AATATGATTGTCTTGTTTAG+AGG | + | chr6.4:18603897-18603916 | MS.gene41964:intron | 25.0% |
!!! | AATTTTATTTCATGAGGTGT+GGG | - | chr6.4:18603014-18603033 | None:intergenic | 25.0% |
!!! | GAGAGTAATTTTATTTCATG+AGG | - | chr6.4:18603020-18603039 | None:intergenic | 25.0% |
!!! | TAATTTTATTTCATGAGGTG+TGG | - | chr6.4:18603015-18603034 | None:intergenic | 25.0% |
!!! | TTTGAAACTGTATATTTTCC+GGG | - | chr6.4:18603658-18603677 | None:intergenic | 25.0% |
AAAAATGTTAAAGGAGAGGA+AGG | + | chr6.4:18604817-18604836 | MS.gene41964:CDS | 30.0% | |
AAACAAGACAATCATATTCG+AGG | - | chr6.4:18603895-18603914 | None:intergenic | 30.0% | |
AAATCTAATGCATATGCCAA+CGG | - | chr6.4:18604565-18604584 | None:intergenic | 30.0% | |
AACTGTGAATAACAGAGATT+GGG | - | chr6.4:18602955-18602974 | None:intergenic | 30.0% | |
AATAAACAAAACACCTTCTC+CGG | - | chr6.4:18603234-18603253 | None:intergenic | 30.0% | |
AGCACATATATACCTGAATA+AGG | - | chr6.4:18603379-18603398 | None:intergenic | 30.0% | |
ATGATGTGTTGAATGAATGT+TGG | + | chr6.4:18603555-18603574 | MS.gene41964:intron | 30.0% | |
CTAACGTAACTATATTCAAG+AGG | + | chr6.4:18603832-18603851 | MS.gene41964:intron | 30.0% | |
GCAGATTTAATGGTTATGAA+GGG | + | chr6.4:18604634-18604653 | MS.gene41964:CDS | 30.0% | |
TAACTGTGAATAACAGAGAT+TGG | - | chr6.4:18602956-18602975 | None:intergenic | 30.0% | |
TGGAATGTGATGAATATGAA+AGG | + | chr6.4:18603498-18603517 | MS.gene41964:intron | 30.0% | |
! | ACTTTTGTTGGCAAAAATAC+AGG | - | chr6.4:18604853-18604872 | None:intergenic | 30.0% |
! | ATTTTTGCCAACAAAAGTCA+TGG | + | chr6.4:18604855-18604874 | MS.gene41964:CDS | 30.0% |
! | CATTTCTAAGAATGTCAACA+GGG | - | chr6.4:18603127-18603146 | None:intergenic | 30.0% |
! | GATGTTAGTCTGAAAGAATT+TGG | + | chr6.4:18603266-18603285 | MS.gene41964:CDS | 30.0% |
!!! | TCGACCGTATTTTAATAAGT+CGG | + | chr6.4:18604657-18604676 | MS.gene41964:CDS | 30.0% |
AAACTTATGGTCGATTGTAC+CGG | + | chr6.4:18603212-18603231 | MS.gene41964:CDS | 35.0% | |
AGTAACCATCTGGTAGAAAT+AGG | - | chr6.4:18604483-18604502 | None:intergenic | 35.0% | |
ATGAATCATACAATCAGCGA+TGG | + | chr6.4:18604070-18604089 | MS.gene41964:CDS | 35.0% | |
ATGTTTGGTTGCGTACTATT+AGG | + | chr6.4:18603441-18603460 | MS.gene41964:intron | 35.0% | |
CTCTGTTATTCACAGTTAAG+AGG | + | chr6.4:18602958-18602977 | MS.gene41964:CDS | 35.0% | |
GAGAGAAAGAAGTAAGAGTA+TGG | + | chr6.4:18603478-18603497 | MS.gene41964:intron | 35.0% | |
GGCAGATTTAATGGTTATGA+AGG | + | chr6.4:18604633-18604652 | MS.gene41964:CDS | 35.0% | |
GTATGATTGTAACCATATGC+AGG | + | chr6.4:18604006-18604025 | MS.gene41964:intron | 35.0% | |
TATACCTGAATAAGGACCAA+TGG | - | chr6.4:18603371-18603390 | None:intergenic | 35.0% | |
TATATGAAAGCAAGCATGAC+CGG | - | chr6.4:18604791-18604810 | None:intergenic | 35.0% | |
TCTTACTTCTTTCTCTCTCA+AGG | - | chr6.4:18603475-18603494 | None:intergenic | 35.0% | |
TTTCTACCAGATGGTTACTA+CGG | + | chr6.4:18604484-18604503 | MS.gene41964:CDS | 35.0% | |
! | GCATTTCTAAGAATGTCAAC+AGG | - | chr6.4:18603128-18603147 | None:intergenic | 35.0% |
!! | ACATAGAGTGTTGTTGTAGT+TGG | - | chr6.4:18604348-18604367 | None:intergenic | 35.0% |
!! | GTGGTTTCATTTTTGCTCTT+CGG | + | chr6.4:18604047-18604066 | MS.gene41964:CDS | 35.0% |
!! | GTGTTTTATTATCCACTTGC+TGG | + | chr6.4:18603164-18603183 | MS.gene41964:CDS | 35.0% |
!! | GTTAACCTATTTCTACCAGA+TGG | + | chr6.4:18604475-18604494 | MS.gene41964:CDS | 35.0% |
!! | TTTGAAAACGTATCGACTCT+TGG | - | chr6.4:18603055-18603074 | None:intergenic | 35.0% |
!!! | CGACCGTATTTTAATAAGTC+GGG | + | chr6.4:18604658-18604677 | MS.gene41964:CDS | 35.0% |
AACAAAAGTCATGGAGAGGT+TGG | + | chr6.4:18604864-18604883 | MS.gene41964:CDS | 40.0% | |
ATATGAAAGCAAGCATGACC+GGG | - | chr6.4:18604790-18604809 | None:intergenic | 40.0% | |
CACCACACAGGTAAAATTGA+CGG | - | chr6.4:18604154-18604173 | None:intergenic | 40.0% | |
CATGTCGTCTAAGGAAAAAG+TGG | - | chr6.4:18604260-18604279 | None:intergenic | 40.0% | |
CCTTAGGAGAAATATCTCGA+GGG | + | chr6.4:18604119-18604138 | MS.gene41964:CDS | 40.0% | |
GAGCTTCTTTATGATGTTCC+CGG | + | chr6.4:18603323-18603342 | MS.gene41964:CDS | 40.0% | |
GCAATCAACGGCAGATTTAA+TGG | + | chr6.4:18604624-18604643 | MS.gene41964:CDS | 40.0% | |
GCATGAACAGTCCATATTAG+AGG | + | chr6.4:18603630-18603649 | MS.gene41964:intron | 40.0% | |
GGATTTGGAGATGTTGAGTT+TGG | + | chr6.4:18604712-18604731 | MS.gene41964:CDS | 40.0% | |
TAAAGAAGCTCTTGCAAGCA+AGG | - | chr6.4:18603314-18603333 | None:intergenic | 40.0% | |
TGGAGATGTTGAGTTTGGTT+GGG | + | chr6.4:18604717-18604736 | MS.gene41964:CDS | 40.0% | |
TTGATGGAGTCACCATTTCT+GGG | - | chr6.4:18602989-18603008 | None:intergenic | 40.0% | |
TTGGAGATGTTGAGTTTGGT+TGG | + | chr6.4:18604716-18604735 | MS.gene41964:CDS | 40.0% | |
TTTGATGGAGTCACCATTTC+TGG | - | chr6.4:18602990-18603009 | None:intergenic | 40.0% | |
! | AAAGTGGTTCCTTTGTTGTC+TGG | - | chr6.4:18604244-18604263 | None:intergenic | 40.0% |
! | AACCGTCAATTTTACCTGTG+TGG | + | chr6.4:18604149-18604168 | MS.gene41964:CDS | 40.0% |
! | AACCTCTCCATGACTTTTGT+TGG | - | chr6.4:18604865-18604884 | None:intergenic | 40.0% |
! | TAAGAGGTGTAACCCAGAAA+TGG | + | chr6.4:18602974-18602993 | MS.gene41964:CDS | 40.0% |
! | TTTTCCGGGTACCTCTAATA+TGG | - | chr6.4:18603644-18603663 | None:intergenic | 40.0% |
!! | GTAGAGAGCTTTTAAGTGCA+AGG | + | chr6.4:18604173-18604192 | MS.gene41964:CDS | 40.0% |
!! | TGTTGTTGTAGTTGGTGAGA+TGG | - | chr6.4:18604340-18604359 | None:intergenic | 40.0% |
!! | TTCCTTTGTTGTCTGGTTCT+GGG | - | chr6.4:18604237-18604256 | None:intergenic | 40.0% |
!!! | CACTTTTTCCTTAGACGACA+TGG | + | chr6.4:18604258-18604277 | MS.gene41964:CDS | 40.0% |
AAAAGCTCTCTACACCACAC+AGG | - | chr6.4:18604166-18604185 | None:intergenic | 45.0% | |
AGATGTGCTTCACACTCCAT+TGG | + | chr6.4:18603352-18603371 | MS.gene41964:CDS | 45.0% | |
AGCTCTTGCAAGCAAGGAAA+TGG | - | chr6.4:18603308-18603327 | None:intergenic | 45.0% | |
AGGTCCTGGTAGGAAACTTA+TGG | + | chr6.4:18603199-18603218 | MS.gene41964:CDS | 45.0% | |
CACTCCATTGGTCCTTATTC+AGG | + | chr6.4:18603364-18603383 | MS.gene41964:CDS | 45.0% | |
CATACAATCAGCGATGGATC+AGG | + | chr6.4:18604076-18604095 | MS.gene41964:CDS | 45.0% | |
CCCTCGAGATATTTCTCCTA+AGG | - | chr6.4:18604122-18604141 | None:intergenic | 45.0% | |
GAGATGTTGAGTTTGGTTGG+GGG | + | chr6.4:18604719-18604738 | MS.gene41964:CDS | 45.0% | |
GATGTTACACGTGCTGGATT+TGG | + | chr6.4:18604697-18604716 | MS.gene41964:CDS | 45.0% | |
GCATTACCGTAGTAACCATC+TGG | - | chr6.4:18604493-18604512 | None:intergenic | 45.0% | |
GCCTTAGGAGAAATATCTCG+AGG | + | chr6.4:18604118-18604137 | MS.gene41964:CDS | 45.0% | |
GGAGATGTTGAGTTTGGTTG+GGG | + | chr6.4:18604718-18604737 | MS.gene41964:CDS | 45.0% | |
GGGTCTTTCCCTACCATAAT+TGG | - | chr6.4:18603107-18603126 | None:intergenic | 45.0% | |
GTCCACCACACTTTCTTCTT+TGG | + | chr6.4:18604280-18604299 | MS.gene41964:CDS | 45.0% | |
GTGAAGCACATCTGTAGAAC+CGG | - | chr6.4:18603345-18603364 | None:intergenic | 45.0% | |
GTTCAGTTCATGAGTGCCTT+AGG | + | chr6.4:18604103-18604122 | MS.gene41964:CDS | 45.0% | |
TCGACCATAAGTTTCCTACC+AGG | - | chr6.4:18603206-18603225 | None:intergenic | 45.0% | |
TCTTGCAAGCAAGGAAATGG+AGG | - | chr6.4:18603305-18603324 | None:intergenic | 45.0% | |
TGAAGCACATCTGTAGAACC+GGG | - | chr6.4:18603344-18603363 | None:intergenic | 45.0% | |
TGAGTCGTGTTACCTGCATA+TGG | - | chr6.4:18604021-18604040 | None:intergenic | 45.0% | |
TGCCAACAAAAGTCATGGAG+AGG | + | chr6.4:18604860-18604879 | MS.gene41964:CDS | 45.0% | |
TGTTAAAGGAGAGGAAGGTG+TGG | + | chr6.4:18604822-18604841 | MS.gene41964:CDS | 45.0% | |
! | ATCCACTTGCTGGTAGATTG+AGG | + | chr6.4:18603174-18603193 | MS.gene41964:CDS | 45.0% |
! | GGAGAGGTTGGTTAAAGAGT+TGG | + | chr6.4:18604876-18604895 | MS.gene41964:CDS | 45.0% |
! | GTTCCTTTGTTGTCTGGTTC+TGG | - | chr6.4:18604238-18604257 | None:intergenic | 45.0% |
! | TCCACTTGCTGGTAGATTGA+GGG | + | chr6.4:18603175-18603194 | MS.gene41964:CDS | 45.0% |
!! | CAGTCCATATTAGAGGTACC+CGG | + | chr6.4:18603637-18603656 | MS.gene41964:intron | 45.0% |
!! | GTTGTAGTTGGTGAGATGGA+AGG | - | chr6.4:18604336-18604355 | None:intergenic | 45.0% |
!! | TCATGAGGTGTGGGTTTTGA+TGG | - | chr6.4:18603005-18603024 | None:intergenic | 45.0% |
ATGGTCGATTGTACCGGAGA+AGG | + | chr6.4:18603218-18603237 | MS.gene41964:CDS | 50.0% | |
CAGGTAACACGACTCAAGTG+TGG | + | chr6.4:18604025-18604044 | MS.gene41964:intron | 50.0% | |
CTTGCTGGTAGATTGAGGGA+AGG | + | chr6.4:18603179-18603198 | MS.gene41964:CDS | 50.0% | |
GACCCAGAACCAGACAACAA+AGG | + | chr6.4:18604232-18604251 | MS.gene41964:CDS | 50.0% | |
GTAACACGACTCAAGTGTGG+TGG | + | chr6.4:18604028-18604047 | MS.gene41964:CDS | 50.0% | |
GTGTATGGAGGACCAGCTAA+AGG | + | chr6.4:18604748-18604767 | MS.gene41964:CDS | 50.0% | |
GTGTCTGATGTTACACGTGC+TGG | + | chr6.4:18604691-18604710 | MS.gene41964:CDS | 50.0% | |
TATGGAGGACCAGCTAAAGG+AGG | + | chr6.4:18604751-18604770 | MS.gene41964:CDS | 50.0% | |
TCCCTCAATCTACCAGCAAG+TGG | - | chr6.4:18603179-18603198 | None:intergenic | 50.0% | |
TGATGAGTGCACGTCACTCT+TGG | - | chr6.4:18604205-18604224 | None:intergenic | 50.0% | |
TGGGGCCAAAGAAGAAAGTG+TGG | - | chr6.4:18604288-18604307 | None:intergenic | 50.0% | |
! | GGCCAAAGAAGAAAGTGTGG+TGG | - | chr6.4:18604285-18604304 | None:intergenic | 50.0% |
AGTGCGAATTTCCGCCACCT+CGG | - | chr6.4:18604311-18604330 | None:intergenic | 55.0% | |
GAGTGCACGTCACTCTTGGT+GGG | - | chr6.4:18604201-18604220 | None:intergenic | 55.0% | |
GATTGAGGGAAGGTCCTGGT+AGG | + | chr6.4:18603189-18603208 | MS.gene41964:CDS | 55.0% | |
GCACCATCTCCTCCTTTAGC+TGG | - | chr6.4:18604763-18604782 | None:intergenic | 55.0% | |
GGACCAGCTAAAGGAGGAGA+TGG | + | chr6.4:18604757-18604776 | MS.gene41964:CDS | 55.0% | |
GGTAGATTGAGGGAAGGTCC+TGG | + | chr6.4:18603185-18603204 | MS.gene41964:CDS | 55.0% | |
GGTTGGGGGAAAGCTGTGTA+TGG | + | chr6.4:18604733-18604752 | MS.gene41964:CDS | 55.0% | |
TCTGTCGCAGTCACAACTGC+AGG | + | chr6.4:18604523-18604542 | MS.gene41964:CDS | 55.0% | |
TGAGTGCACGTCACTCTTGG+TGG | - | chr6.4:18604202-18604221 | None:intergenic | 55.0% | |
TGGGGGAAAGCTGTGTATGG+AGG | + | chr6.4:18604736-18604755 | MS.gene41964:CDS | 55.0% | |
TTTCTTCTTTGGCCCCACCG+AGG | + | chr6.4:18604291-18604310 | MS.gene41964:CDS | 55.0% | |
! | GGAGGAGATGGTGCTAATCC+CGG | + | chr6.4:18604769-18604788 | MS.gene41964:CDS | 55.0% |
!! | GTGGTGGACCATGTCGTCTA+AGG | - | chr6.4:18604269-18604288 | None:intergenic | 55.0% |
CGAATTTCCGCCACCTCGGT+GGG | - | chr6.4:18604307-18604326 | None:intergenic | 60.0% | |
GAATTTCCGCCACCTCGGTG+GGG | - | chr6.4:18604306-18604325 | None:intergenic | 60.0% | |
CTTCTTTGGCCCCACCGAGG+TGG | + | chr6.4:18604294-18604313 | MS.gene41964:CDS | 65.0% | |
GCGAATTTCCGCCACCTCGG+TGG | - | chr6.4:18604308-18604327 | None:intergenic | 65.0% | |
CTTTGGCCCCACCGAGGTGG+CGG | + | chr6.4:18604297-18604316 | MS.gene41964:CDS | 70.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr6.4 | gene | 18602948 | 18604957 | 18602948 | ID=MS.gene41964 |
chr6.4 | mRNA | 18602948 | 18604957 | 18602948 | ID=MS.gene41964.t1;Parent=MS.gene41964 |
chr6.4 | exon | 18602948 | 18603385 | 18602948 | ID=MS.gene41964.t1.exon1;Parent=MS.gene41964.t1 |
chr6.4 | CDS | 18602948 | 18603385 | 18602948 | ID=cds.MS.gene41964.t1;Parent=MS.gene41964.t1 |
chr6.4 | exon | 18604028 | 18604957 | 18604028 | ID=MS.gene41964.t1.exon2;Parent=MS.gene41964.t1 |
chr6.4 | CDS | 18604028 | 18604957 | 18604028 | ID=cds.MS.gene41964.t1;Parent=MS.gene41964.t1 |
Gene Sequence |
Protein sequence |