AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene43541

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene43541.t1 MTR_5g015500 99.324 592 3 1 1 591 1 592 0.0 1224
MS.gene43541.t1 MTR_5g015500 95.668 554 15 3 39 591 7 552 0.0 1083
MS.gene43541.t1 MTR_8g036015 56.774 155 67 0 347 501 3 157 5.19e-57 189
MS.gene43541.t1 MTR_7g105220 51.370 146 71 0 347 492 12 157 7.83e-48 165
MS.gene43541.t1 MTR_2g085075 49.007 151 77 0 347 497 464 614 1.32e-42 162
MS.gene43541.t1 MTR_2g023120 46.988 166 86 2 341 504 9 174 5.60e-36 142
MS.gene43541.t1 MTR_7g095750 50.340 147 59 5 358 492 25 169 9.87e-33 134
MS.gene43541.t1 MTR_4g086760 44.737 152 71 4 354 493 18 168 1.80e-32 129
MS.gene43541.t1 MTR_4g086760 44.737 152 71 4 354 493 18 168 2.00e-32 127
MS.gene43541.t1 MTR_4g086760 44.737 152 71 4 354 493 18 168 2.54e-32 127
MS.gene43541.t1 MTR_8g079690 40.609 197 82 6 354 516 18 213 2.85e-32 128
MS.gene43541.t1 MTR_6g084140 39.521 167 93 2 347 505 3 169 1.29e-31 130
MS.gene43541.t1 MTR_6g084140 39.521 167 93 2 347 505 20 186 1.61e-31 129
MS.gene43541.t1 MTR_7g116340 52.206 136 53 4 354 478 18 152 1.98e-31 120
MS.gene43541.t1 MTR_1g117010 47.222 144 71 4 354 493 94 236 6.89e-31 121
MS.gene43541.t1 MTR_1g117010 47.222 144 71 4 354 493 94 236 6.89e-31 121
MS.gene43541.t1 MTR_8g442420 38.922 167 94 2 347 505 3 169 2.93e-30 125
MS.gene43541.t1 MTR_1g085560 47.586 145 70 5 354 493 99 242 5.53e-30 119
MS.gene43541.t1 MTR_7g110980 45.833 144 73 4 354 493 110 252 2.07e-29 117
MS.gene43541.t1 MTR_4g075290 49.265 136 57 4 354 478 18 152 1.52e-28 112
MS.gene43541.t1 MTR_3g117750 48.529 136 58 4 354 478 26 160 7.91e-28 110
MS.gene43541.t1 MTR_8g040180 45.455 143 67 4 354 486 32 173 1.16e-27 110
MS.gene43541.t1 MTR_3g463900 47.761 134 58 4 354 476 48 180 1.25e-27 110
MS.gene43541.t1 MTR_3g070500 42.604 169 70 6 325 476 52 210 1.19e-26 108
MS.gene43541.t1 MTR_4g073650 42.000 150 75 4 354 492 60 208 1.43e-24 102
MS.gene43541.t1 MTR_3g070500 45.000 140 50 6 325 447 52 181 4.26e-22 94.4
MS.gene43541.t1 MTR_3g107660 40.411 146 73 5 359 492 29 172 3.41e-19 92.4
MS.gene43541.t1 MTR_1g094065 34.641 153 92 3 345 496 80 225 1.22e-17 82.8
MS.gene43541.t1 MTR_1g011980 39.850 133 66 5 358 478 25 155 9.77e-17 84.3
MS.gene43541.t1 MTR_1g035360 30.464 151 100 3 345 495 79 224 3.35e-13 69.7
MS.gene43541.t1 MTR_3g085705 39.091 110 62 3 377 486 21 125 9.37e-13 65.9
MS.gene43541.t1 MTR_3g070500 40.000 120 45 6 325 427 52 161 1.37e-12 66.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene43541.t1 AT5G67530 76.421 598 131 5 1 591 1 595 0.0 909
MS.gene43541.t1 AT1G01940 55.484 155 69 0 347 501 3 157 3.23e-56 187
MS.gene43541.t1 AT2G36130 50.685 146 72 0 347 492 12 157 2.64e-49 169
MS.gene43541.t1 AT3G44600 50.331 151 75 0 347 497 478 628 3.46e-42 161
MS.gene43541.t1 AT4G33060 44.910 167 89 3 341 504 9 175 1.87e-39 151
MS.gene43541.t1 AT1G53720 40.719 167 91 2 347 505 3 169 5.75e-34 132
MS.gene43541.t1 AT5G13120 48.951 143 68 4 354 492 107 248 8.07e-34 130
MS.gene43541.t1 AT5G13120 48.951 143 68 4 354 492 103 244 9.36e-34 129
MS.gene43541.t1 AT3G63400 49.660 147 60 5 358 492 25 169 6.98e-33 130
MS.gene43541.t1 AT1G53720 40.719 167 91 2 347 505 3 169 8.11e-33 132
MS.gene43541.t1 AT3G56070 47.799 159 70 5 354 501 18 174 1.50e-32 123
MS.gene43541.t1 AT3G56070 47.799 159 70 5 354 501 18 174 1.50e-32 123
MS.gene43541.t1 AT3G63400 49.660 147 60 5 358 492 25 169 6.84e-32 130
MS.gene43541.t1 AT3G63400 49.660 147 60 5 358 492 25 169 6.84e-32 130
MS.gene43541.t1 AT3G63400 49.660 147 60 5 358 492 25 169 6.84e-32 130
MS.gene43541.t1 AT2G15790 45.033 151 70 4 354 492 18 167 4.96e-31 124
MS.gene43541.t1 AT2G16600 48.000 150 65 5 354 492 19 166 7.08e-30 116
MS.gene43541.t1 AT3G62030 46.154 143 72 4 354 492 108 249 1.47e-29 117
MS.gene43541.t1 AT3G62030 46.154 143 72 4 354 492 109 250 1.56e-29 117
MS.gene43541.t1 AT4G38740 46.000 150 68 5 354 492 18 165 3.33e-29 114
MS.gene43541.t1 AT4G34870 47.020 151 67 5 354 493 18 166 3.46e-29 114
MS.gene43541.t1 AT3G62030 46.154 143 72 4 354 492 162 303 4.24e-29 118
MS.gene43541.t1 AT2G21130 45.333 150 69 5 354 492 19 166 4.59e-29 114
MS.gene43541.t1 AT3G55920 49.254 134 56 4 354 476 73 205 1.12e-28 114
MS.gene43541.t1 AT2G29960 49.254 134 56 4 354 476 46 178 2.11e-27 110
MS.gene43541.t1 AT2G29960 49.254 134 56 4 354 476 46 178 2.11e-27 110
MS.gene43541.t1 AT5G58710 42.675 157 66 5 354 487 49 204 5.73e-26 106
MS.gene43541.t1 AT2G38730 42.000 150 76 4 354 493 46 194 2.11e-25 104
MS.gene43541.t1 AT4G34960 40.000 150 78 4 354 492 61 209 5.16e-23 98.2
MS.gene43541.t1 AT2G16600 44.615 130 56 3 354 481 19 134 8.60e-22 92.4
MS.gene43541.t1 AT2G29960 44.030 134 53 5 354 476 46 168 8.66e-21 90.9
MS.gene43541.t1 AT4G34960 46.667 105 44 4 354 447 61 164 3.85e-19 85.5
MS.gene43541.t1 AT2G47320 31.646 158 104 3 339 496 72 225 4.87e-16 78.2
MS.gene43541.t1 AT4G32420 33.333 147 84 5 358 492 25 169 1.43e-12 71.2
MS.gene43541.t1 AT4G32420 33.333 147 84 5 358 492 25 169 1.43e-12 71.2
MS.gene43541.t1 AT4G32420 33.333 147 84 5 358 492 25 169 1.43e-12 71.2
MS.gene43541.t1 AT4G32420 33.333 147 84 5 358 492 25 169 1.43e-12 71.2
MS.gene43541.t1 AT1G53780 38.043 92 56 1 415 505 4 95 1.90e-12 70.5
MS.gene43541.t1 AT4G32420 33.835 133 75 4 358 478 25 156 5.35e-12 69.3

Find 130 sgRNAs with CRISPR-Local

Find 425 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCCCGACATGTTTATGTTAT+AGG 0.188740 5.3:+8437315 None:intergenic
ATCATTTGCATTCTTCTCTT+TGG 0.192528 5.3:+8435590 None:intergenic
CCTTCCAGAGTGGACTAATT+TGG 0.194082 5.3:+8436414 None:intergenic
TGTACATATCCCTTCTTCTT+TGG 0.242086 5.3:+8436736 None:intergenic
ACTCCATATATTATAAAATA+TGG 0.273786 5.3:-8440713 MS.gene43541:CDS
GAGTTAAGTTCATCCTTAAA+AGG 0.274372 5.3:+8436436 None:intergenic
ACGCACGCGCAGCAATAAAA+AGG 0.292893 5.3:+8441356 None:intergenic
TTGTGATCGTGCAGCTAAAA+TGG 0.299588 5.3:+8437183 None:intergenic
GTAGAGGTGGTGAATCAATT+TGG 0.300503 5.3:-8436465 MS.gene43541:CDS
TTCGGTTGCCCATTCAGTTT+TGG 0.317221 5.3:+8441427 None:intergenic
ACACTACTGGCGCTGCTTCC+CGG 0.320784 5.3:-8436828 MS.gene43541:CDS
TATGGTAAACATCCTGTTAC+TGG 0.327911 5.3:-8440695 MS.gene43541:CDS
GTGTCGACAGCAGCAGGTTC+CGG 0.349179 5.3:+8435350 None:intergenic
GCTTGCTCTTCTTCCTCATC+TGG 0.351194 5.3:+8435618 None:intergenic
TAGAGGTGGTGAATCAATTT+GGG 0.354211 5.3:-8436464 MS.gene43541:CDS
TCCTCATCTGGCTCGGTGTA+AGG 0.356961 5.3:+8435630 None:intergenic
AACTGAATGGGCAACCGAAT+GGG 0.359925 5.3:-8441423 MS.gene43541:CDS
AGCCACATGCATAGCTATTC+TGG 0.365801 5.3:+8437033 None:intergenic
AGGAGCTCCATCGGTCGATT+TGG 0.372599 5.3:+8437147 None:intergenic
AACTGACCTGAATTGTTATA+AGG 0.374079 5.3:+8437651 None:intergenic
CTGCCATCCGGTGTACAAAC+TGG 0.379181 5.3:+8441234 None:intergenic
ACCTTCTGATCAAGTGCATT+AGG 0.380549 5.3:+8437538 None:intergenic
GATGAAGTTCTCGCATGCCC+TGG 0.382051 5.3:+8436660 None:intergenic
GGATGACCTTATAACAATTC+AGG 0.382294 5.3:-8437657 MS.gene43541:intron
ACTTGATCAGAAGGTTCTTC+TGG 0.383542 5.3:-8437530 MS.gene43541:CDS
GAGTTCTTGTGAAAAGTTAG+TGG 0.396927 5.3:+8440644 None:intergenic
TTCAAGGGAGCTCCAGTAAC+AGG 0.402194 5.3:+8440683 None:intergenic
GATTCAGATGTTCCAGCTCC+AGG 0.414464 5.3:+8435431 None:intergenic
TCACCGAGGAGGCATTTACT+AGG 0.426361 5.3:-8437679 MS.gene43541:CDS
CTCTTCTTCCTCATCTGGCT+CGG 0.430426 5.3:+8435623 None:intergenic
GGAGCTGGAACATCTGAATC+TGG 0.432526 5.3:-8435428 MS.gene43541:CDS
AATGAGATCTTGCTGCTTCA+AGG 0.435416 5.3:+8440667 None:intergenic
ATCGACCGATGGAGCTCCTC+AGG 0.442437 5.3:-8437143 MS.gene43541:CDS
CAGGAGGAAATCAAGATAAC+AGG 0.443423 5.3:-8435672 MS.gene43541:CDS
GTGAAAACTTTGTTTAGCAC+TGG 0.453174 5.3:+8437889 None:intergenic
GGCTCATGGTATAGTAATCC+TGG 0.456340 5.3:-8435449 MS.gene43541:CDS
AAACAAATGCTTAAAGAGCT+TGG 0.459982 5.3:-8437286 MS.gene43541:CDS
TGAGAAGAATCCAAAGAAGA+AGG 0.463758 5.3:-8436746 MS.gene43541:CDS
GACATGTTTATGTTATAGGC+TGG 0.464280 5.3:+8437319 None:intergenic
CTATGCATGTGGCTGGTGAC+AGG 0.466621 5.3:-8437024 MS.gene43541:CDS
ACAGGTGTTGGCGGTGGTGT+TGG 0.468240 5.3:-8435401 MS.gene43541:CDS
TTGGCAAATACTTGAAAGCT+AGG 0.473260 5.3:-8435382 MS.gene43541:CDS
TGGAAATGTCTTCTGCTATG+AGG 0.475926 5.3:-8437833 MS.gene43541:intron
AACAGTGGCCCACATACTAA+TGG 0.478597 5.3:-8436373 MS.gene43541:CDS
GGTCGGTCACTGTCATCAAC+AGG 0.480063 5.3:+8436241 None:intergenic
GTTCTTAACCAAAACTGAAT+GGG 0.482844 5.3:-8441435 MS.gene43541:CDS
CCAAATTAGTCCACTCTGGA+AGG 0.483082 5.3:-8436414 MS.gene43541:CDS
TGTTCTTAACCAAAACTGAA+TGG 0.483873 5.3:-8441436 MS.gene43541:CDS
GGATTTGTAACCTCCCCATT+CGG 0.485009 5.3:+8441409 None:intergenic
GTTAAAAGTCGTTACACTAC+TGG 0.485111 5.3:-8436841 MS.gene43541:CDS
GCCTATAACATAAACATGTC+GGG 0.491731 5.3:-8437316 MS.gene43541:CDS
TACACTAGCAACAATGGAAA+AGG 0.495791 5.3:-8436266 MS.gene43541:CDS
ACATCTGAATCTGGAGGTAC+AGG 0.497797 5.3:-8435419 MS.gene43541:CDS
CTCACCATCTTTGCATTCAC+CGG 0.498409 5.3:+8436998 None:intergenic
ATTGTGGCAGTCAAAACTAC+TGG 0.503952 5.3:-8437853 MS.gene43541:CDS
GGAAAGGAAACTGCATTGCA+TGG 0.504017 5.3:-8437253 MS.gene43541:CDS
TGTGAACGTGGATATTATAA+CGG 0.504461 5.3:-8436631 MS.gene43541:CDS
GCTGCATCTGCCGCAGTACA+TGG 0.504884 5.3:-8437103 MS.gene43541:CDS
ATGAAGTTCTCGCATGCCCT+GGG 0.508823 5.3:+8436661 None:intergenic
ATGAGATCTTGCTGCTTCAA+GGG 0.514142 5.3:+8440668 None:intergenic
AAACTGAATGGGCAACCGAA+TGG 0.514848 5.3:-8441424 MS.gene43541:CDS
AACTGGGAACCATTAGTATG+TGG 0.522616 5.3:+8436364 None:intergenic
CGACACTGGTACAGCCGTTG+TGG 0.526101 5.3:-8435333 MS.gene43541:CDS
TCCTAATGCACTTGATCAGA+AGG 0.526353 5.3:-8437539 MS.gene43541:CDS
TTCATCACGCTTTGTGAACG+TGG 0.527470 5.3:-8436643 MS.gene43541:CDS
TGATGACAGTGACCGACCTC+TGG 0.527741 5.3:-8436236 MS.gene43541:intron
ACATCGAAGACGCTGCCATC+CGG 0.528738 5.3:+8441222 None:intergenic
GAAAGCTAGGAATGCTCCAC+CGG 0.531055 5.3:-8435369 MS.gene43541:CDS
TGGTATAGTAATCCTGGAGC+TGG 0.532781 5.3:-8435443 MS.gene43541:CDS
ATGATGTAGAAGTAAAAGAC+CGG 0.536884 5.3:+8436809 None:intergenic
GGAGGTACAGGTGTTGGCGG+TGG 0.538393 5.3:-8435407 MS.gene43541:CDS
TGCACTGTGATATAGCGCCC+AGG 0.543902 5.3:-8436678 MS.gene43541:CDS
AAAGAGCTTGGAACTGAGCA+AGG 0.545096 5.3:-8437274 MS.gene43541:CDS
GATCCTACTGGTACTGGTAG+AGG 0.546770 5.3:-8436481 MS.gene43541:CDS
AGCCTATAACATAAACATGT+CGG 0.547101 5.3:-8437317 MS.gene43541:CDS
CAAATTAGTCCACTCTGGAA+GGG 0.547791 5.3:-8436413 MS.gene43541:CDS
GGCACCGGTGAATGCAAAGA+TGG 0.550158 5.3:-8437002 MS.gene43541:intron
GGTGGCGATCCTACTGGTAC+TGG 0.550338 5.3:-8436487 MS.gene43541:CDS
GAAAGGAAACTGCATTGCAT+GGG 0.550522 5.3:-8437252 MS.gene43541:CDS
GAGAAGAATCCAAAGAAGAA+GGG 0.558567 5.3:-8436745 MS.gene43541:CDS
TTCGCATTTCAGGACAAGGT+TGG 0.559596 5.3:-8435470 MS.gene43541:intron
GAACCTGCTGCTGTCGACAC+TGG 0.560594 5.3:-8435347 MS.gene43541:CDS
AAATTAGTCCACTCTGGAAG+GGG 0.560803 5.3:-8436412 MS.gene43541:CDS
ATACAAGGTGGCGATCCTAC+TGG 0.561736 5.3:-8436493 MS.gene43541:CDS
GTACCAGTGTCGACAGCAGC+AGG 0.562548 5.3:+8435344 None:intergenic
GACACTGGTACAGCCGTTGT+GGG 0.562924 5.3:-8435332 MS.gene43541:CDS
GTACAAACTGGAAACTCAAA+CGG 0.564858 5.3:+8441246 None:intergenic
GAATCTGGAGGTACAGGTGT+TGG 0.565131 5.3:-8435413 MS.gene43541:CDS
ATCCCTAGTAAATGCCTCCT+CGG 0.566661 5.3:+8437676 None:intergenic
TCTGGAGGTACAGGTGTTGG+CGG 0.566682 5.3:-8435410 MS.gene43541:CDS
AACTCCAAATTAGTCCACTC+TGG 0.569288 5.3:-8436418 MS.gene43541:CDS
TTCAGGACAAGGTTGGCTCA+TGG 0.574231 5.3:-8435463 MS.gene43541:intron
CACCGAGGAGGCATTTACTA+GGG 0.577306 5.3:-8437678 MS.gene43541:CDS
TAAAATGGCAGCGAGTGCAG+CGG 0.579946 5.3:+8437198 None:intergenic
TCGACAGCAGCAGGTTCCGG+TGG 0.579956 5.3:+8435353 None:intergenic
GAGTGCCTGAGGAGCTCCAT+CGG 0.581000 5.3:+8437138 None:intergenic
TGTGGCTGGTGACAGGGCAC+CGG 0.581705 5.3:-8437017 MS.gene43541:CDS
AATTTGAAAATTGACGATGA+AGG 0.585312 5.3:-8437487 MS.gene43541:intron
ACTGAATGGGCAACCGAATG+GGG 0.586736 5.3:-8441422 MS.gene43541:CDS
TGGAAGGGGTGTAGTTAGCA+TGG 0.588160 5.3:-8436398 MS.gene43541:CDS
ATTGACTACACTAGCAACAA+TGG 0.592417 5.3:-8436272 MS.gene43541:CDS
TCCTTACACCGAGCCAGATG+AGG 0.597914 5.3:-8435631 MS.gene43541:CDS
GCTTGGAACTGAGCAAGGAA+AGG 0.602840 5.3:-8437269 MS.gene43541:CDS
AGAATAGCTATGCATGTGGC+TGG 0.603645 5.3:-8437031 MS.gene43541:CDS
AAGAGAAAAGCAGTTGTCAG+TGG 0.606073 5.3:-8435305 MS.gene43541:CDS
CACTGAATTTACCCACATTG+TGG 0.607025 5.3:-8437869 MS.gene43541:CDS
TGAGTTTCCAGTTTGTACAC+CGG 0.608147 5.3:-8441241 MS.gene43541:CDS
GCACTGTGATATAGCGCCCA+GGG 0.612039 5.3:-8436677 MS.gene43541:CDS
TATGCATGTGGCTGGTGACA+GGG 0.618344 5.3:-8437023 MS.gene43541:CDS
ACTGGGAACCATTAGTATGT+GGG 0.619509 5.3:+8436365 None:intergenic
TTTCCAGTTTGTACACCGGA+TGG 0.621583 5.3:-8441237 MS.gene43541:CDS
AAAGGAAACTGCATTGCATG+GGG 0.624761 5.3:-8437251 MS.gene43541:CDS
GAAGATTCCAAATCGACCGA+TGG 0.632221 5.3:-8437154 MS.gene43541:CDS
TAGTAAATGCCTCCTCGGTG+AGG 0.635602 5.3:+8437681 None:intergenic
AGAGGTGGTGAATCAATTTG+GGG 0.636786 5.3:-8436463 MS.gene43541:CDS
TGATGTAGAAGTAAAAGACC+GGG 0.648897 5.3:+8436810 None:intergenic
GTAGTTAGCATGGCAAACAG+TGG 0.660220 5.3:-8436388 MS.gene43541:CDS
TCTACAATACTGAGTGCCTG+AGG 0.667099 5.3:+8437127 None:intergenic
CCACCTCTACCAGTACCAGT+AGG 0.670311 5.3:+8436478 None:intergenic
GAAGGAGCTCCTCACCGAGG+AGG 0.675466 5.3:-8437690 MS.gene43541:CDS
CCTACTGGTACTGGTAGAGG+TGG 0.680494 5.3:-8436478 MS.gene43541:CDS
GAATGGGCAACCGAATGGGG+AGG 0.684057 5.3:-8441419 MS.gene43541:CDS
ATTTACGACTCACCAGAGGT+CGG 0.685790 5.3:+8436224 None:intergenic
TGCCAGAATAGCTATGCATG+TGG 0.688708 5.3:-8437035 MS.gene43541:CDS
GCTGGAACATCTGAATCTGG+AGG 0.694916 5.3:-8435425 MS.gene43541:CDS
GTACAACTGCATACAACACA+CGG 0.699245 5.3:-8436718 MS.gene43541:CDS
AAGGAAACTGCATTGCATGG+GGG 0.711732 5.3:-8437250 MS.gene43541:CDS
TGCACTTCTTCCATGTACTG+CGG 0.716775 5.3:+8437093 None:intergenic
TAACTACACCCCTTCCAGAG+TGG 0.717283 5.3:+8436404 None:intergenic
CTGGAAGGAGCTCCTCACCG+AGG 0.735881 5.3:-8437693 MS.gene43541:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATAAATAAATATGACAAAA+CGG - chr5.3:8436986-8437005 MS.gene43541:intron 10.0%
!!! TAGTTTTTTTTTTGAAATAT+TGG - chr5.3:8436455-8436474 MS.gene43541:CDS 10.0%
!!! TTACCATATTTTATAATATA+TGG + chr5.3:8436037-8436056 None:intergenic 10.0%
!! AATTAACTAACTAATTAACT+AGG + chr5.3:8436487-8436506 None:intergenic 15.0%
!! ACTCCATATATTATAAAATA+TGG - chr5.3:8436031-8436050 MS.gene43541:intron 15.0%
!! ATAAGTAATCTCAAATATTA+TGG + chr5.3:8441196-8441215 None:intergenic 15.0%
!! CTATTGAAAATAGTTTAATT+TGG + chr5.3:8438536-8438555 None:intergenic 15.0%
!!! ACTCATTAAATTTTCATTAT+GGG - chr5.3:8440753-8440772 MS.gene43541:intron 15.0%
!!! ATTTTTTTCTCACTTTTATA+AGG - chr5.3:8441223-8441242 MS.gene43541:CDS 15.0%
!!! CTTTTTAAAAATTGTATGAA+GGG - chr5.3:8439836-8439855 MS.gene43541:intron 15.0%
!!! GATTGTATTTTCATATTTAA+GGG + chr5.3:8436403-8436422 None:intergenic 15.0%
!!! TGAATCTTATTTATTACAAT+AGG + chr5.3:8436905-8436924 None:intergenic 15.0%
!!! TGATTGTATTTTCATATTTA+AGG + chr5.3:8436404-8436423 None:intergenic 15.0%
!!! TTTTATATATGTATGTTTGT+GGG - chr5.3:8438990-8439009 MS.gene43541:intron 15.0%
!!! TTTTTATATATGTATGTTTG+TGG - chr5.3:8438989-8439008 MS.gene43541:intron 15.0%
!!! TTTTTTTTGAAATATTGGTA+GGG - chr5.3:8436460-8436479 MS.gene43541:CDS 15.0%
!!! TTTTTTTTTGAAATATTGGT+AGG - chr5.3:8436459-8436478 MS.gene43541:CDS 15.0%
!! AAAAAAATGTCCATTATGTT+TGG + chr5.3:8436577-8436596 None:intergenic 20.0%
!! AAAAGAGATAAATGAAGAAA+AGG - chr5.3:8437073-8437092 MS.gene43541:CDS 20.0%
!! AAATATGAAAATACAATCAC+AGG - chr5.3:8436405-8436424 MS.gene43541:CDS 20.0%
!! AATTTAATCAGTCGTAATAA+TGG - chr5.3:8436712-8436731 MS.gene43541:CDS 20.0%
!! ATACATAGAATAATGATTAC+TGG + chr5.3:8439862-8439881 None:intergenic 20.0%
!! ATTTAAAAAATAAGCTCTTG+AGG + chr5.3:8440898-8440917 None:intergenic 20.0%
!! ATTTGTACAATATGAAAAAC+TGG + chr5.3:8440400-8440419 None:intergenic 20.0%
!! TACTTTCTTCCTTATTATTT+GGG + chr5.3:8437869-8437888 None:intergenic 20.0%
!! TCAACAAAAGTTAATTTAAG+CGG - chr5.3:8438168-8438187 MS.gene43541:intron 20.0%
!! TTACATGCTTATTTATTCTT+TGG - chr5.3:8441045-8441064 MS.gene43541:intron 20.0%
!! TTGATCATAATAGGATATTA+TGG - chr5.3:8437588-8437607 MS.gene43541:intron 20.0%
!! TTTGTACAATATGAAAAACT+GGG + chr5.3:8440399-8440418 None:intergenic 20.0%
!!! AAAACTTTCAATTTTTAGTC+CGG + chr5.3:8438234-8438253 None:intergenic 20.0%
!!! AATTTAAAGATTTTTCTGGA+TGG - chr5.3:8441464-8441483 MS.gene43541:CDS 20.0%
!!! AGTTTTTTCTGTTAGTTATT+TGG + chr5.3:8438450-8438469 None:intergenic 20.0%
!!! ATACGTGTTTACATTTTTAA+CGG - chr5.3:8437728-8437747 MS.gene43541:CDS 20.0%
!!! CACTCATTAAATTTTCATTA+TGG - chr5.3:8440752-8440771 MS.gene43541:intron 20.0%
!!! CCTTCATACAATTTTTAAAA+AGG + chr5.3:8439838-8439857 None:intergenic 20.0%
!!! CCTTTTTAAAAATTGTATGA+AGG - chr5.3:8439835-8439854 MS.gene43541:intron 20.0%
!!! CGATTTTTTTATGTTATTTG+AGG - chr5.3:8438709-8438728 MS.gene43541:intron 20.0%
!!! CTTAAATTAACTTTTGTTGA+TGG + chr5.3:8438168-8438187 None:intergenic 20.0%
!!! TATTCTGTTTTTTTTACTCT+CGG + chr5.3:8437031-8437050 None:intergenic 20.0%
!!! TCAAGAGCTTATTTTTTAAA+TGG - chr5.3:8440897-8440916 MS.gene43541:intron 20.0%
!!! TCATAATCATTTTTTGTAAC+TGG + chr5.3:8439966-8439985 None:intergenic 20.0%
!!! TCTACTTTTTTTTCTAAATC+AGG + chr5.3:8440646-8440665 None:intergenic 20.0%
!!! TGAAAAATTGATTCAATGAA+AGG + chr5.3:8435433-8435452 None:intergenic 20.0%
!!! TTTTATGTTATTTGAGGATA+AGG - chr5.3:8438715-8438734 MS.gene43541:intron 20.0%
!!! TTTTTTTGAAATATTGGTAG+GGG - chr5.3:8436461-8436480 MS.gene43541:CDS 20.0%
! AAAAGGAAGACGTTTAAAAA+CGG + chr5.3:8435374-8435393 None:intergenic 25.0%
! AAAGATAACAGAATGTACAA+TGG + chr5.3:8440677-8440696 None:intergenic 25.0%
! AATCAAAGTAACTAGAAAAG+TGG + chr5.3:8437896-8437915 None:intergenic 25.0%
! AATTAGTTAGTTAATTCCCT+TGG - chr5.3:8436491-8436510 MS.gene43541:CDS 25.0%
! AATTTGAAAATTGACGATGA+AGG - chr5.3:8439257-8439276 MS.gene43541:intron 25.0%
! AGTGTGTTAATTCAATGTAT+AGG - chr5.3:8436606-8436625 MS.gene43541:intron 25.0%
! ATCCATTAACAATTATCAAC+TGG - chr5.3:8440996-8441015 MS.gene43541:intron 25.0%
! CATAAAATTCCTGCATAAAA+TGG + chr5.3:8440231-8440250 None:intergenic 25.0%
! CTACTTTCTTCCTTATTATT+TGG + chr5.3:8437870-8437889 None:intergenic 25.0%
! GAGTAAAAAAAACAGAATAC+AGG - chr5.3:8437032-8437051 MS.gene43541:CDS 25.0%
! TAAACATCAAGACAAAAAAC+TGG - chr5.3:8439032-8439051 MS.gene43541:intron 25.0%
! TAAAGCTTGAAAAACAGAAA+GGG + chr5.3:8437947-8437966 None:intergenic 25.0%
! TAAATATGACAAAACGGATA+AGG - chr5.3:8436992-8437011 MS.gene43541:intron 25.0%
! TACACTGTACTATTATAGTA+TGG - chr5.3:8438044-8438063 MS.gene43541:intron 25.0%
! TCCATTAACAATTATCAACT+GGG - chr5.3:8440997-8441016 MS.gene43541:intron 25.0%
! TGCAAAATATTGTAATCCTA+AGG + chr5.3:8440808-8440827 None:intergenic 25.0%
! TGTAATGAAGGATTATACAT+AGG - chr5.3:8437915-8437934 MS.gene43541:intron 25.0%
! TTAAACTCAATGCTGTAATA+AGG + chr5.3:8437528-8437547 None:intergenic 25.0%
! TTAAAGCTTGAAAAACAGAA+AGG + chr5.3:8437948-8437967 None:intergenic 25.0%
! TTAATGAAGTTCTCAATTTC+AGG - chr5.3:8439881-8439900 MS.gene43541:intron 25.0%
! TTAGTTATTTGGTATAGAGT+CGG + chr5.3:8438439-8438458 None:intergenic 25.0%
! TTATCAATAGAGTGCATATT+TGG + chr5.3:8435976-8435995 None:intergenic 25.0%
! TTGCAGAGTTTATGTAAATA+AGG - chr5.3:8435680-8435699 MS.gene43541:intron 25.0%
!! AACTTCAAACATACAGTTTT+TGG - chr5.3:8440434-8440453 MS.gene43541:intron 25.0%
!! ACAAACACAACAACTTTTTA+AGG + chr5.3:8436369-8436388 None:intergenic 25.0%
!! ACTCTATTGATAATAACTTG+TGG - chr5.3:8435983-8436002 MS.gene43541:intron 25.0%
!! AGAAATTAAAAGTATGCCAA+GGG + chr5.3:8436510-8436529 None:intergenic 25.0%
!! AGTTACTTTGATTGTAATGA+AGG - chr5.3:8437903-8437922 MS.gene43541:CDS 25.0%
!! CTAAATCAGGTCTAAATTTT+TGG + chr5.3:8440633-8440652 None:intergenic 25.0%
!! GGTGAATTTAAAGATTTTTC+TGG - chr5.3:8441460-8441479 MS.gene43541:CDS 25.0%
!! TACGTGTTTACATTTTTAAC+GGG - chr5.3:8437729-8437748 MS.gene43541:intron 25.0%
!! TATCTCTCCTATTATGTTTT+GGG - chr5.3:8436324-8436343 MS.gene43541:CDS 25.0%
!! TCTTCATTTATCTCTTTTCT+GGG + chr5.3:8437071-8437090 None:intergenic 25.0%
!! TTCTTCATTTATCTCTTTTC+TGG + chr5.3:8437072-8437091 None:intergenic 25.0%
!!! ATCATTTTTGTGCATTCTTT+TGG - chr5.3:8436144-8436163 MS.gene43541:intron 25.0%
!!! CATATATTCATTTAGTTTGC+TGG - chr5.3:8438779-8438798 MS.gene43541:intron 25.0%
!!! CTGCTAATTTAATTTGTAGA+TGG - chr5.3:8438964-8438983 MS.gene43541:intron 25.0%
!!! TAGGTCAAAAAGAAGTATTT+AGG + chr5.3:8439775-8439794 None:intergenic 25.0%
!!! TAGTTGTTTTAACATTGATC+AGG - chr5.3:8436681-8436700 MS.gene43541:CDS 25.0%
!!! TTTGTTCTTTGAGATTTCAT+GGG - chr5.3:8438631-8438650 MS.gene43541:intron 25.0%
!!! TTTTGTTCTTTGAGATTTCA+TGG - chr5.3:8438630-8438649 MS.gene43541:intron 25.0%
AAAAAAACAGAATACAGGAC+AGG - chr5.3:8437037-8437056 MS.gene43541:CDS 30.0%
AAAAAACAGAATACAGGACA+GGG - chr5.3:8437038-8437057 MS.gene43541:CDS 30.0%
AAACAAATGCTTAAAGAGCT+TGG - chr5.3:8439458-8439477 MS.gene43541:intron 30.0%
AAACACGTATTTGCATGATA+AGG + chr5.3:8437718-8437737 None:intergenic 30.0%
AAAGGAAATGACTAAGATAC+TGG - chr5.3:8437091-8437110 MS.gene43541:CDS 30.0%
AAATGCGAACCAAAGAATAA+GGG + chr5.3:8441263-8441282 None:intergenic 30.0%
AACACGTATTTGCATGATAA+GGG + chr5.3:8437717-8437736 None:intergenic 30.0%
AACTGACCTGAATTGTTATA+AGG + chr5.3:8439096-8439115 None:intergenic 30.0%
AAGAATTTCGTTAGAAAGTG+AGG + chr5.3:8437637-8437656 None:intergenic 30.0%
AAGGAAATGACTAAGATACT+GGG - chr5.3:8437092-8437111 MS.gene43541:CDS 30.0%
AAGTTGTTGTGTTTGTCAAA+TGG - chr5.3:8436373-8436392 MS.gene43541:CDS 30.0%
AATTAGCAGTGTTAACACTA+AGG + chr5.3:8438953-8438972 None:intergenic 30.0%
AATTTAATGAGTGAAACCCA+AGG + chr5.3:8440745-8440764 None:intergenic 30.0%
ACTGTACTATTATAGTATGG+AGG - chr5.3:8438047-8438066 MS.gene43541:intron 30.0%
AGAAAAGAAAGTCATTCTTC+AGG + chr5.3:8436655-8436674 None:intergenic 30.0%
AGCCTATAACATAAACATGT+CGG - chr5.3:8439427-8439446 MS.gene43541:intron 30.0%
ATCATTTGCATTCTTCTCTT+TGG + chr5.3:8441157-8441176 None:intergenic 30.0%
ATGATGTAGAAGTAAAAGAC+CGG + chr5.3:8439938-8439957 None:intergenic 30.0%
ATTTAACAACAATGCTTGCT+GGG - chr5.3:8440952-8440971 MS.gene43541:intron 30.0%
GACATACAACTTATTCAGAT+TGG + chr5.3:8435807-8435826 None:intergenic 30.0%
GAGTTAAGTTCATCCTTAAA+AGG + chr5.3:8440311-8440330 None:intergenic 30.0%
GCTGCTAATAAAGATACTTA+TGG + chr5.3:8436928-8436947 None:intergenic 30.0%
GGGTGGCTATAATAAAAATA+TGG - chr5.3:8436820-8436839 MS.gene43541:CDS 30.0%
GTATATGTAGTATTGCCTAT+TGG - chr5.3:8436277-8436296 MS.gene43541:CDS 30.0%
GTGTACAATGATTTAAGGAT+TGG - chr5.3:8438003-8438022 MS.gene43541:intron 30.0%
GTTCTTAACCAAAACTGAAT+GGG - chr5.3:8435309-8435328 MS.gene43541:CDS 30.0%
TAATAGGAGAGATACTACTA+TGG + chr5.3:8436318-8436337 None:intergenic 30.0%
TAGAACAGTATTAGAATCCT+AGG + chr5.3:8438211-8438230 None:intergenic 30.0%
TATCTGCTTCATTGTATGTT+TGG - chr5.3:8435845-8435864 MS.gene43541:intron 30.0%
TATGCATGAGATGTATCAAT+AGG + chr5.3:8439798-8439817 None:intergenic 30.0%
TATGTATGTTTGTGGGAAAT+AGG - chr5.3:8438997-8439016 MS.gene43541:intron 30.0%
TATTTAACAACAATGCTTGC+TGG - chr5.3:8440951-8440970 MS.gene43541:intron 30.0%
TGAGCAACAGTTACATATAT+TGG + chr5.3:8438508-8438527 None:intergenic 30.0%
TGTGAACGTGGATATTATAA+CGG - chr5.3:8440113-8440132 MS.gene43541:intron 30.0%
TGTTCTTAACCAAAACTGAA+TGG - chr5.3:8435308-8435327 MS.gene43541:CDS 30.0%
TTAATCAGTCGTAATAATGG+TGG - chr5.3:8436715-8436734 MS.gene43541:CDS 30.0%
TTAATTTAAGCGGCATGTTT+GGG - chr5.3:8438178-8438197 MS.gene43541:intron 30.0%
TTATAACAATTCAGGTCAGT+TGG - chr5.3:8439095-8439114 MS.gene43541:intron 30.0%
TTCTCTTTCAGCTTAACTAT+TGG - chr5.3:8438353-8438372 MS.gene43541:intron 30.0%
TTGATTCAATGAAAGGATGA+AGG + chr5.3:8435426-8435445 None:intergenic 30.0%
TTTGACAAAATACCATGTGA+TGG + chr5.3:8437475-8437494 None:intergenic 30.0%
! ACAGCATTGAGTTTAATACA+TGG - chr5.3:8437532-8437551 MS.gene43541:CDS 30.0%
! ACATTCTGTTATCTTTTGCA+CGG - chr5.3:8440681-8440700 MS.gene43541:CDS 30.0%
! AGGAATTTTATGATACAAGG+TGG - chr5.3:8440239-8440258 MS.gene43541:intron 30.0%
! ATTTGTGAACATTGAGGTTT+TGG - chr5.3:8440833-8440852 MS.gene43541:intron 30.0%
! CAGAAATTAAAAGTATGCCA+AGG + chr5.3:8436511-8436530 None:intergenic 30.0%
! GTATCTCTCCTATTATGTTT+TGG - chr5.3:8436323-8436342 MS.gene43541:CDS 30.0%
! TACTATGGTCTAAACCATTT+TGG + chr5.3:8436303-8436322 None:intergenic 30.0%
! TCATTGTATGTTTGGAATCA+CGG - chr5.3:8435853-8435872 MS.gene43541:intron 30.0%
! TCTTATAGTCCATTTTATGC+AGG - chr5.3:8440219-8440238 MS.gene43541:intron 30.0%
! TGCAGGAATTTTATGATACA+AGG - chr5.3:8440236-8440255 MS.gene43541:intron 30.0%
!! ACATTTGTTTTCTTTGGCTT+TGG - chr5.3:8437796-8437815 MS.gene43541:intron 30.0%
!! ATAACTTGTGGTTTTCAACT+TGG - chr5.3:8435995-8436014 MS.gene43541:intron 30.0%
!! GGTAACACATTTGTTTTCTT+TGG - chr5.3:8437790-8437809 MS.gene43541:intron 30.0%
!! GTAGTTCTGAGTAAAGAAAA+CGG + chr5.3:8439388-8439407 None:intergenic 30.0%
!! TAACTTGTGGTTTTCAACTT+GGG - chr5.3:8435996-8436015 MS.gene43541:intron 30.0%
!! TTATTTATTCTTTGGCTTGC+AGG - chr5.3:8441053-8441072 MS.gene43541:intron 30.0%
!! TTCAAACATACAGTTTTTGG+AGG - chr5.3:8440437-8440456 MS.gene43541:intron 30.0%
!!! AAAGATATGCGGTTTTTTGT+TGG - chr5.3:8437276-8437295 MS.gene43541:CDS 30.0%
!!! AGTCATTCTTCAGGTTTTTT+AGG + chr5.3:8436646-8436665 None:intergenic 30.0%
!!! CAGTTTTGGTTAAGAACATT+CGG + chr5.3:8435306-8435325 None:intergenic 30.0%
!!! CTTGGCATACTTTTAATTTC+TGG - chr5.3:8436509-8436528 MS.gene43541:intron 30.0%
!!! GTCATTCTTCAGGTTTTTTA+GGG + chr5.3:8436645-8436664 None:intergenic 30.0%
!!! GTTTTTTGTTGGCATTTCAT+AGG - chr5.3:8437287-8437306 MS.gene43541:CDS 30.0%
!!! TCATTCTTCAGGTTTTTTAG+GGG + chr5.3:8436644-8436663 None:intergenic 30.0%
!!! TTGCTTTTCATAGAAGCATT+AGG - chr5.3:8440138-8440157 MS.gene43541:intron 30.0%
AAAACCAGAAAAAGAGAGAG+TGG + chr5.3:8440577-8440596 None:intergenic 35.0%
AAAATACCATGTGATGGCTA+TGG + chr5.3:8437469-8437488 None:intergenic 35.0%
AAACCAGAAAAAGAGAGAGT+GGG + chr5.3:8440576-8440595 None:intergenic 35.0%
AACTCAATGCTGTAATAAGG+TGG + chr5.3:8437525-8437544 None:intergenic 35.0%
AAGATACTGGGCAAATAATC+AGG - chr5.3:8437104-8437123 MS.gene43541:CDS 35.0%
AAGATTCTGTACCACTGTAA+TGG - chr5.3:8438080-8438099 MS.gene43541:intron 35.0%
AATATTGTAATCCTAAGGCC+TGG + chr5.3:8440803-8440822 None:intergenic 35.0%
ACACGTATTTGCATGATAAG+GGG + chr5.3:8437716-8437735 None:intergenic 35.0%
AGAAAATATGGATGAGTTGC+AGG + chr5.3:8439293-8439312 None:intergenic 35.0%
AGAGTGAGAACAAAGATATG+CGG - chr5.3:8437265-8437284 MS.gene43541:CDS 35.0%
AGAGTGCATATTTGGATTGA+CGG + chr5.3:8435968-8435987 None:intergenic 35.0%
AGATACTGGGCAAATAATCA+GGG - chr5.3:8437105-8437124 MS.gene43541:CDS 35.0%
ATTAATTTACGACTCACCAG+AGG + chr5.3:8440527-8440546 None:intergenic 35.0%
ATTAGAATGTGAGGGTCTTT+AGG - chr5.3:8437822-8437841 MS.gene43541:intron 35.0%
ATTCTATCATCTCATTCGCA+TGG + chr5.3:8437171-8437190 None:intergenic 35.0%
ATTGACTACACTAGCAACAA+TGG - chr5.3:8440472-8440491 MS.gene43541:intron 35.0%
CACATACACAAACATCAACA+TGG + chr5.3:8439173-8439192 None:intergenic 35.0%
CATCAAGACAAAAAACTGGA+AGG - chr5.3:8439036-8439055 MS.gene43541:intron 35.0%
CATGAGATGTATCAATAGGT+AGG + chr5.3:8439794-8439813 None:intergenic 35.0%
CATGATTGAGTTCATTGCTT+AGG - chr5.3:8436187-8436206 MS.gene43541:intron 35.0%
CCATCATCCCAAAACATAAT+AGG + chr5.3:8436334-8436353 None:intergenic 35.0%
CCATTATGTTTGGCAGAATA+AGG + chr5.3:8436567-8436586 None:intergenic 35.0%
CCTTATTCTGCCAAACATAA+TGG - chr5.3:8436564-8436583 MS.gene43541:intron 35.0%
CGAATGAGATGATAGAATGT+GGG - chr5.3:8437173-8437192 MS.gene43541:CDS 35.0%
CTAACGCGAAAGAAACAAAA+TGG - chr5.3:8438325-8438344 MS.gene43541:intron 35.0%
CTTGAACCTTTGATCATGAT+CGG - chr5.3:8437206-8437225 MS.gene43541:CDS 35.0%
GAAATGCGAACCAAAGAATA+AGG + chr5.3:8441264-8441283 None:intergenic 35.0%
GACATGTTTATGTTATAGGC+TGG + chr5.3:8439428-8439447 None:intergenic 35.0%
GAGAAGAATCCAAAGAAGAA+GGG - chr5.3:8439999-8440018 MS.gene43541:intron 35.0%
GAGTTCTTGTGAAAAGTTAG+TGG + chr5.3:8436103-8436122 None:intergenic 35.0%
GATCAGTAGCTCAGAAAATA+TGG + chr5.3:8439305-8439324 None:intergenic 35.0%
GCATGGTGTACAATGATTTA+AGG - chr5.3:8437998-8438017 MS.gene43541:intron 35.0%
GCCTATAACATAAACATGTC+GGG - chr5.3:8439428-8439447 MS.gene43541:intron 35.0%
GGATGACCTTATAACAATTC+AGG - chr5.3:8439087-8439106 MS.gene43541:intron 35.0%
GGATTCTAATACTGTTCTAC+CGG - chr5.3:8438212-8438231 MS.gene43541:intron 35.0%
GTAACGTCTAATTTCATAGC+AGG + chr5.3:8437418-8437437 None:intergenic 35.0%
GTACAAACTGGAAACTCAAA+CGG + chr5.3:8435501-8435520 None:intergenic 35.0%
GTCACTCTTGATTTACTACA+AGG + chr5.3:8440189-8440208 None:intergenic 35.0%
GTGAACTAACCCTTATTCTT+TGG - chr5.3:8441251-8441270 MS.gene43541:CDS 35.0%
GTTAAAAGTCGTTACACTAC+TGG - chr5.3:8439903-8439922 MS.gene43541:intron 35.0%
GTTAATTTAAGCGGCATGTT+TGG - chr5.3:8438177-8438196 MS.gene43541:intron 35.0%
TACACTAGCAACAATGGAAA+AGG - chr5.3:8440478-8440497 MS.gene43541:intron 35.0%
TAGAGGTGGTGAATCAATTT+GGG - chr5.3:8440280-8440299 MS.gene43541:intron 35.0%
TATGCTTAGTTGACCAGTTT+CGG + chr5.3:8438600-8438619 None:intergenic 35.0%
TATGGTAAACATCCTGTTAC+TGG - chr5.3:8436049-8436068 MS.gene43541:intron 35.0%
TCCCGACATGTTTATGTTAT+AGG + chr5.3:8439432-8439451 None:intergenic 35.0%
TGAGAAGAATCCAAAGAAGA+AGG - chr5.3:8439998-8440017 MS.gene43541:intron 35.0%
TGATGTAGAAGTAAAAGACC+GGG + chr5.3:8439937-8439956 None:intergenic 35.0%
TGGAAGACGTTGATCATAAT+AGG - chr5.3:8437579-8437598 MS.gene43541:intron 35.0%
TGTACATATCCCTTCTTCTT+TGG + chr5.3:8440011-8440030 None:intergenic 35.0%
TGTCACACACCCAAATAATA+AGG - chr5.3:8437857-8437876 MS.gene43541:CDS 35.0%
TTGGCAAATACTTGAAAGCT+AGG - chr5.3:8441362-8441381 MS.gene43541:CDS 35.0%
! AAAAACGGTGCGATTTTCTT+TGG + chr5.3:8435359-8435378 None:intergenic 35.0%
! AATTTGGGGAAAGCCTTTTA+AGG - chr5.3:8440295-8440314 MS.gene43541:intron 35.0%
! ACTGCATAAGCTTTGTCAAA+TGG - chr5.3:8437767-8437786 MS.gene43541:intron 35.0%
! ACTGTCATTTGTGAACATTG+AGG - chr5.3:8440827-8440846 MS.gene43541:intron 35.0%
! ACTTTTCACAAGAACTCAGA+AGG - chr5.3:8436106-8436125 MS.gene43541:intron 35.0%
! CTGCATAAGCTTTGTCAAAT+GGG - chr5.3:8437768-8437787 MS.gene43541:intron 35.0%
! GGGATGCATTTATGATTTTC+TGG - chr5.3:8438745-8438764 MS.gene43541:intron 35.0%
! GTGAAAACTTTGTTTAGCAC+TGG + chr5.3:8438858-8438877 None:intergenic 35.0%
! TATTCTTTGGTTCGCATTTC+AGG - chr5.3:8441264-8441283 MS.gene43541:intron 35.0%
! TGCATAAGCTTTGTCAAATG+GGG - chr5.3:8437769-8437788 MS.gene43541:intron 35.0%
! TGGAAAGGCACAAAAAGAAA+GGG - chr5.3:8439523-8439542 MS.gene43541:intron 35.0%
! TGTTATTTGAGGATAAGGTG+TGG - chr5.3:8438720-8438739 MS.gene43541:intron 35.0%
! TTTTCTCTTCTTTCCCACAA+CGG + chr5.3:8441428-8441447 None:intergenic 35.0%
!! AGCAGTTTTATCACTTGATG+AGG + chr5.3:8439690-8439709 None:intergenic 35.0%
!! ATGGTGTTGTTTGTTCTATG+TGG - chr5.3:8437607-8437626 MS.gene43541:intron 35.0%
!! GCCCAGTTGATAATTGTTAA+TGG + chr5.3:8441001-8441020 None:intergenic 35.0%
!! TCGTAATAATGGTGGATGAT+GGG - chr5.3:8436723-8436742 MS.gene43541:CDS 35.0%
!! TCTAAACCATTTTGGCCAAT+AGG + chr5.3:8436295-8436314 None:intergenic 35.0%
!! TTTGGTGGATTAGAATGTGA+GGG - chr5.3:8437814-8437833 MS.gene43541:intron 35.0%
!!! CATTCTTCAGGTTTTTTAGG+GGG + chr5.3:8436643-8436662 None:intergenic 35.0%
!!! CCTATTATGTTTTGGGATGA+TGG - chr5.3:8436331-8436350 MS.gene43541:CDS 35.0%
!!! TTTGTTTTCTTTGGCTTTGG+TGG - chr5.3:8437799-8437818 MS.gene43541:intron 35.0%
AAAGGAAACTGCATTGCATG+GGG - chr5.3:8439493-8439512 MS.gene43541:intron 40.0%
AAATCCCAGACTTAGGCTAT+AGG + chr5.3:8438111-8438130 None:intergenic 40.0%
AACCAGAAAAAGAGAGAGTG+GGG + chr5.3:8440575-8440594 None:intergenic 40.0%
AACTCCAAATTAGTCCACTC+TGG - chr5.3:8440326-8440345 MS.gene43541:intron 40.0%
AACTGGGAACCATTAGTATG+TGG + chr5.3:8440383-8440402 None:intergenic 40.0%
AAGAGAAAAGCAGTTGTCAG+TGG - chr5.3:8441439-8441458 MS.gene43541:CDS 40.0%
ACCTTCTGATCAAGTGCATT+AGG + chr5.3:8439209-8439228 None:intergenic 40.0%
ACTGGGAACCATTAGTATGT+GGG + chr5.3:8440382-8440401 None:intergenic 40.0%
ACTTGATCAGAAGGTTCTTC+TGG - chr5.3:8439214-8439233 MS.gene43541:intron 40.0%
AGAGGTGGTGAATCAATTTG+GGG - chr5.3:8440281-8440300 MS.gene43541:intron 40.0%
AGTGTTAACACTAAGGATCC+TGG + chr5.3:8438946-8438965 None:intergenic 40.0%
ATGTCTCCGATCATGATCAA+AGG + chr5.3:8437215-8437234 None:intergenic 40.0%
ATTGTGGCAGTCAAAACTAC+TGG - chr5.3:8438891-8438910 MS.gene43541:intron 40.0%
ATTTAGCGACTCTTTCCACT+AGG - chr5.3:8437375-8437394 MS.gene43541:intron 40.0%
ATTTGAGGATAAGGTGTGGA+TGG - chr5.3:8438724-8438743 MS.gene43541:intron 40.0%
CACTGAATTTACCCACATTG+TGG - chr5.3:8438875-8438894 MS.gene43541:intron 40.0%
CAGGAGGAAATCAAGATAAC+AGG - chr5.3:8441072-8441091 MS.gene43541:intron 40.0%
CATGCTGTCAACACAAACAA+TGG - chr5.3:8441021-8441040 MS.gene43541:intron 40.0%
CTACAAGGACAAAGACACAA+AGG + chr5.3:8440174-8440193 None:intergenic 40.0%
CTGAAACAAATCCCAGACTT+AGG + chr5.3:8438118-8438137 None:intergenic 40.0%
CTTGAGGAAGGGTTTGTATA+TGG - chr5.3:8438407-8438426 MS.gene43541:intron 40.0%
GAAAGGAAACTGCATTGCAT+GGG - chr5.3:8439492-8439511 MS.gene43541:intron 40.0%
GCGAATGAGATGATAGAATG+TGG - chr5.3:8437172-8437191 MS.gene43541:CDS 40.0%
GTACAACTGCATACAACACA+CGG - chr5.3:8440026-8440045 MS.gene43541:intron 40.0%
GTAGAGGTGGTGAATCAATT+TGG - chr5.3:8440279-8440298 MS.gene43541:intron 40.0%
GTATTGCCTATTGGCCAAAA+TGG - chr5.3:8436286-8436305 MS.gene43541:CDS 40.0%
TAGTTCACATACCTAGCGTT+GGG - chr5.3:8438380-8438399 MS.gene43541:intron 40.0%
TATGTTGCTACGGCAGATTT+AGG + chr5.3:8436761-8436780 None:intergenic 40.0%
TCATTGAATGCAAAAGCTCG+AGG - chr5.3:8436540-8436559 MS.gene43541:intron 40.0%
TCCTAATGCACTTGATCAGA+AGG - chr5.3:8439205-8439224 MS.gene43541:intron 40.0%
TCCTGCAGAGTAACAAAGAA+AGG + chr5.3:8438823-8438842 None:intergenic 40.0%
TGAGTTTCCAGTTTGTACAC+CGG - chr5.3:8435503-8435522 MS.gene43541:intron 40.0%
TGCAGCACATTATACTACCT+TGG - chr5.3:8437497-8437516 MS.gene43541:CDS 40.0%
TGGAAATGTCTTCTGCTATG+AGG - chr5.3:8438911-8438930 MS.gene43541:intron 40.0%
TTGGAATCACGGTGAGTATA+AGG - chr5.3:8435864-8435883 MS.gene43541:intron 40.0%
TTGGACTATCTTGAGTACAG+TGG - chr5.3:8440852-8440871 MS.gene43541:intron 40.0%
TTTGAGGATAAGGTGTGGAT+GGG - chr5.3:8438725-8438744 MS.gene43541:intron 40.0%
TTTGATCATGATCGGAGACA+TGG - chr5.3:8437214-8437233 MS.gene43541:CDS 40.0%
! AAATTAGTCCACTCTGGAAG+GGG - chr5.3:8440332-8440351 MS.gene43541:intron 40.0%
! AATGAGATCTTGCTGCTTCA+AGG + chr5.3:8436080-8436099 None:intergenic 40.0%
! ATGAGATCTTGCTGCTTCAA+GGG + chr5.3:8436079-8436098 None:intergenic 40.0%
! CAAATTAGTCCACTCTGGAA+GGG - chr5.3:8440331-8440350 MS.gene43541:intron 40.0%
! CATTGTTTGTGTTGACAGCA+TGG + chr5.3:8441023-8441042 None:intergenic 40.0%
! CTAAGTCTGGGATTTGTTTC+AGG - chr5.3:8438116-8438135 MS.gene43541:intron 40.0%
! GTGGAAAGGCACAAAAAGAA+AGG - chr5.3:8439522-8439541 MS.gene43541:intron 40.0%
!! CTTTGGTGGATTAGAATGTG+AGG - chr5.3:8437813-8437832 MS.gene43541:intron 40.0%
!! GCGTTAGCTTGTAAGAATTC+AGG + chr5.3:8438312-8438331 None:intergenic 40.0%
!! GCTATGAGGTTTGTTTTTCC+AGG - chr5.3:8438925-8438944 MS.gene43541:intron 40.0%
!! GTCGTAATAATGGTGGATGA+TGG - chr5.3:8436722-8436741 MS.gene43541:CDS 40.0%
!! GTGCAGTGAATTTTAGCACA+TGG - chr5.3:8437559-8437578 MS.gene43541:intron 40.0%
!! TTGTACACCATGCTGATTCT+CGG + chr5.3:8437991-8438010 None:intergenic 40.0%
!! TTTATTCTTTGGCTTGCAGG+AGG - chr5.3:8441056-8441075 MS.gene43541:intron 40.0%
!!! AGTTTTGACTGCCACAATGT+GGG + chr5.3:8438889-8438908 None:intergenic 40.0%
!!! TAGTTTTGACTGCCACAATG+TGG + chr5.3:8438890-8438909 None:intergenic 40.0%
AAACTGAATGGGCAACCGAA+TGG - chr5.3:8435320-8435339 MS.gene43541:CDS 45.0%
AAAGAGCTTGGAACTGAGCA+AGG - chr5.3:8439470-8439489 MS.gene43541:intron 45.0%
AACAGTGGCCCACATACTAA+TGG - chr5.3:8440371-8440390 MS.gene43541:intron 45.0%
AACCACTGAACAACGGGTAA+GGG - chr5.3:8436953-8436972 MS.gene43541:intron 45.0%
AACCAGCTAGACAGATGCAA+AGG + chr5.3:8440718-8440737 None:intergenic 45.0%
AACTGAATGGGCAACCGAAT+GGG - chr5.3:8435321-8435340 MS.gene43541:CDS 45.0%
AAGGAAACTGCATTGCATGG+GGG - chr5.3:8439494-8439513 MS.gene43541:intron 45.0%
ACCAGAAAAAGAGAGAGTGG+GGG + chr5.3:8440574-8440593 None:intergenic 45.0%
AGAATAGCTATGCATGTGGC+TGG - chr5.3:8439713-8439732 MS.gene43541:intron 45.0%
AGCCACATGCATAGCTATTC+TGG + chr5.3:8439714-8439733 None:intergenic 45.0%
ATCCCTAGTAAATGCCTCCT+CGG + chr5.3:8439071-8439090 None:intergenic 45.0%
ATTTACGACTCACCAGAGGT+CGG + chr5.3:8440523-8440542 None:intergenic 45.0%
CAAGGACAAAGACACAAAGG+TGG + chr5.3:8440171-8440190 None:intergenic 45.0%
CATGTTTGGGAGAACTTCCT+AGG - chr5.3:8438191-8438210 MS.gene43541:intron 45.0%
CCAAATTAGTCCACTCTGGA+AGG - chr5.3:8440330-8440349 MS.gene43541:intron 45.0%
CGTTGGGAATTCTTGAGGAA+GGG - chr5.3:8438396-8438415 MS.gene43541:intron 45.0%
CTAGTTCACATACCTAGCGT+TGG - chr5.3:8438379-8438398 MS.gene43541:intron 45.0%
CTCACCATCTTTGCATTCAC+CGG + chr5.3:8439749-8439768 None:intergenic 45.0%
GAAGATTCCAAATCGACCGA+TGG - chr5.3:8439590-8439609 MS.gene43541:intron 45.0%
GCATGTTATGCTGTAGCCTA+TGG - chr5.3:8436789-8436808 MS.gene43541:CDS 45.0%
GCCATGTCAGTATGTTGCTA+CGG + chr5.3:8436771-8436790 None:intergenic 45.0%
GCCTTTCTTTGTTACTCTGC+AGG - chr5.3:8438819-8438838 MS.gene43541:intron 45.0%
GCTGAGATATTCTCCGAAAC+TGG - chr5.3:8438584-8438603 MS.gene43541:intron 45.0%
GCTGTAATAAGGTGGTACCA+AGG + chr5.3:8437517-8437536 None:intergenic 45.0%
GGAAAGGAAACTGCATTGCA+TGG - chr5.3:8439491-8439510 MS.gene43541:intron 45.0%
GGATTTGTAACCTCCCCATT+CGG + chr5.3:8435338-8435357 None:intergenic 45.0%
GGCTCATGGTATAGTAATCC+TGG - chr5.3:8441295-8441314 MS.gene43541:intron 45.0%
GTAGTTAGCATGGCAAACAG+TGG - chr5.3:8440356-8440375 MS.gene43541:intron 45.0%
TAACAGTTCAGCAAGCCTAG+TGG + chr5.3:8437393-8437412 None:intergenic 45.0%
TAATCCTAAGGCCTGGAACA+GGG + chr5.3:8440796-8440815 None:intergenic 45.0%
TACCTTTGCATCTGTCTAGC+TGG - chr5.3:8440713-8440732 MS.gene43541:CDS 45.0%
TATAGGCAGCACCATTACAG+TGG + chr5.3:8438094-8438113 None:intergenic 45.0%
TCATTCGCATGGATCGTAAC+TGG + chr5.3:8437160-8437179 None:intergenic 45.0%
TCGAGTGTAGTGTACTTGGT+AGG - chr5.3:8436428-8436447 MS.gene43541:CDS 45.0%
TCTACAATACTGAGTGCCTG+AGG + chr5.3:8439620-8439639 None:intergenic 45.0%
TGCACTTCTTCCATGTACTG+CGG + chr5.3:8439654-8439673 None:intergenic 45.0%
TGCCAGAATAGCTATGCATG+TGG - chr5.3:8439709-8439728 MS.gene43541:intron 45.0%
TGGTATAGTAATCCTGGAGC+TGG - chr5.3:8441301-8441320 MS.gene43541:intron 45.0%
TGTAGCCTATGGTGAAAGCA+GGG - chr5.3:8436800-8436819 MS.gene43541:CDS 45.0%
TTCATCACGCTTTGTGAACG+TGG - chr5.3:8440101-8440120 MS.gene43541:intron 45.0%
TTCGCATTTCAGGACAAGGT+TGG - chr5.3:8441274-8441293 MS.gene43541:intron 45.0%
TTGAGCTTCGGATTGACGTA+GGG - chr5.3:8436222-8436241 MS.gene43541:intron 45.0%
TTGCATCTGTCTAGCTGGTT+TGG - chr5.3:8440718-8440737 MS.gene43541:CDS 45.0%
TTTCCAGTTTGTACACCGGA+TGG - chr5.3:8435507-8435526 MS.gene43541:intron 45.0%
! ACATCTGAATCTGGAGGTAC+AGG - chr5.3:8441325-8441344 MS.gene43541:intron 45.0%
! GCTGGCTGCTTTGTATTGAA+TGG - chr5.3:8438797-8438816 MS.gene43541:intron 45.0%
! GTGGTTTTCAACTTGGGTTC+AGG - chr5.3:8436002-8436021 MS.gene43541:intron 45.0%
! TGCAGTTGTGAGTTGAGCTT+CGG - chr5.3:8436210-8436229 MS.gene43541:intron 45.0%
! TTCGGTTGCCCATTCAGTTT+TGG + chr5.3:8435320-8435339 None:intergenic 45.0%
! TTGGTTCGCATTTCAGGACA+AGG - chr5.3:8441270-8441289 MS.gene43541:intron 45.0%
!! ACAGTTTTTGGAGGCGTAGT+TGG - chr5.3:8440446-8440465 MS.gene43541:intron 45.0%
!! CCTTCCAGAGTGGACTAATT+TGG + chr5.3:8440333-8440352 None:intergenic 45.0%
!!! CTTCAGGTTTTTTAGGGGGA+GGG + chr5.3:8436639-8436658 None:intergenic 45.0%
!!! TCTTCAGGTTTTTTAGGGGG+AGG + chr5.3:8436640-8436659 None:intergenic 45.0%
ACCCGTTGTTCAGTGGTTCA+AGG + chr5.3:8436951-8436970 None:intergenic 50.0%
ACGCACGCGCAGCAATAAAA+AGG + chr5.3:8435391-8435410 None:intergenic 50.0%
ACTGAATGGGCAACCGAATG+GGG - chr5.3:8435322-8435341 MS.gene43541:CDS 50.0%
AGTCTGCATATCCCTGTTCC+AGG - chr5.3:8440782-8440801 MS.gene43541:intron 50.0%
ATACAAGGTGGCGATCCTAC+TGG - chr5.3:8440251-8440270 MS.gene43541:intron 50.0%
ATATCCCTGTTCCAGGCCTT+AGG - chr5.3:8440789-8440808 MS.gene43541:intron 50.0%
ATCCCTTACCCGTTGTTCAG+TGG + chr5.3:8436958-8436977 None:intergenic 50.0%
ATGAAGTTCTCGCATGCCCT+GGG + chr5.3:8440086-8440105 None:intergenic 50.0%
ATGTGATGGCTATGGCCTGA+CGG + chr5.3:8437461-8437480 None:intergenic 50.0%
CAGGTCGAGTGTAGTGTACT+TGG - chr5.3:8436424-8436443 MS.gene43541:CDS 50.0%
CCCGTTGTTCAGTGGTTCAA+GGG + chr5.3:8436950-8436969 None:intergenic 50.0%
CCCTTGAACCACTGAACAAC+GGG - chr5.3:8436947-8436966 MS.gene43541:intron 50.0%
CCTCAAGAATTCCCAACGCT+AGG + chr5.3:8438394-8438413 None:intergenic 50.0%
CGGAGACATGGAAATGAGAG+TGG - chr5.3:8437226-8437245 MS.gene43541:CDS 50.0%
CTCTTCTTCCTCATCTGGCT+CGG + chr5.3:8441124-8441143 None:intergenic 50.0%
CTGTAGCCTATGGTGAAAGC+AGG - chr5.3:8436799-8436818 MS.gene43541:CDS 50.0%
GAAAGCTAGGAATGCTCCAC+CGG - chr5.3:8441375-8441394 MS.gene43541:CDS 50.0%
GAACCACTGAACAACGGGTA+AGG - chr5.3:8436952-8436971 MS.gene43541:intron 50.0%
GATTCAGATGTTCCAGCTCC+AGG + chr5.3:8441316-8441335 None:intergenic 50.0%
GCCCTTGAACCACTGAACAA+CGG - chr5.3:8436946-8436965 MS.gene43541:intron 50.0%
GCCGTAGCAACATACTGACA+TGG - chr5.3:8436767-8436786 MS.gene43541:CDS 50.0%
GCGTTGGGAATTCTTGAGGA+AGG - chr5.3:8438395-8438414 MS.gene43541:intron 50.0%
GCTGCCTATAGCCTAAGTCT+GGG - chr5.3:8438104-8438123 MS.gene43541:intron 50.0%
GCTGGAACATCTGAATCTGG+AGG - chr5.3:8441319-8441338 MS.gene43541:intron 50.0%
GCTTGCTCTTCTTCCTCATC+TGG + chr5.3:8441129-8441148 None:intergenic 50.0%
GCTTGGAACTGAGCAAGGAA+AGG - chr5.3:8439475-8439494 MS.gene43541:intron 50.0%
GGAGCTGGAACATCTGAATC+TGG - chr5.3:8441316-8441335 MS.gene43541:intron 50.0%
GTAATCCTAAGGCCTGGAAC+AGG + chr5.3:8440797-8440816 None:intergenic 50.0%
GTTGAGCTTCGGATTGACGT+AGG - chr5.3:8436221-8436240 MS.gene43541:intron 50.0%
TAAAATGGCAGCGAGTGCAG+CGG + chr5.3:8439549-8439568 None:intergenic 50.0%
TAACTACACCCCTTCCAGAG+TGG + chr5.3:8440343-8440362 None:intergenic 50.0%
TAGTAAATGCCTCCTCGGTG+AGG + chr5.3:8439066-8439085 None:intergenic 50.0%
TATGCATGTGGCTGGTGACA+GGG - chr5.3:8439721-8439740 MS.gene43541:intron 50.0%
TGAGCTTCGGATTGACGTAG+GGG - chr5.3:8436223-8436242 MS.gene43541:intron 50.0%
TGCTGCCTATAGCCTAAGTC+TGG - chr5.3:8438103-8438122 MS.gene43541:intron 50.0%
TGTCTCTCCGAGAATCAGCA+TGG - chr5.3:8437981-8438000 MS.gene43541:intron 50.0%
TTCAAGGGAGCTCCAGTAAC+AGG + chr5.3:8436064-8436083 None:intergenic 50.0%
! ACCCCCACTCTCTCTTTTTC+TGG - chr5.3:8440570-8440589 MS.gene43541:intron 50.0%
! CCTAGCGTTGGGAATTCTTG+AGG - chr5.3:8438391-8438410 MS.gene43541:intron 50.0%
! GAATCTGGAGGTACAGGTGT+TGG - chr5.3:8441331-8441350 MS.gene43541:intron 50.0%
! TGGAAGGGGTGTAGTTAGCA+TGG - chr5.3:8440346-8440365 MS.gene43541:intron 50.0%
! TTCAGGACAAGGTTGGCTCA+TGG - chr5.3:8441281-8441300 MS.gene43541:intron 50.0%
!! CACCGAGGAGGCATTTACTA+GGG - chr5.3:8439066-8439085 MS.gene43541:intron 50.0%
!! GATCCTACTGGTACTGGTAG+AGG - chr5.3:8440263-8440282 MS.gene43541:intron 50.0%
!! GTCTAGCTGGTTTGGACCTT+GGG - chr5.3:8440726-8440745 MS.gene43541:intron 50.0%
!! GTTTTTGGAGGCGTAGTTGG+TGG - chr5.3:8440449-8440468 MS.gene43541:intron 50.0%
!! TCACCGAGGAGGCATTTACT+AGG - chr5.3:8439065-8439084 MS.gene43541:intron 50.0%
!! TGTCTAGCTGGTTTGGACCT+TGG - chr5.3:8440725-8440744 MS.gene43541:intron 50.0%
ACATCGAAGACGCTGCCATC+CGG + chr5.3:8435525-8435544 None:intergenic 55.0%
AGCCACCCTGCTTTCACCAT+AGG + chr5.3:8436808-8436827 None:intergenic 55.0%
AGCCTATGGTGAAAGCAGGG+TGG - chr5.3:8436803-8436822 MS.gene43541:CDS 55.0%
AGGAGCTCCATCGGTCGATT+TGG + chr5.3:8439600-8439619 None:intergenic 55.0%
ATGGCCTGACGGCTTTCACA+CGG + chr5.3:8437450-8437469 None:intergenic 55.0%
CCACCTCTACCAGTACCAGT+AGG + chr5.3:8440269-8440288 None:intergenic 55.0%
CTATGCATGTGGCTGGTGAC+AGG - chr5.3:8439720-8439739 MS.gene43541:intron 55.0%
CTGCCATCCGGTGTACAAAC+TGG + chr5.3:8435513-8435532 None:intergenic 55.0%
GAAACTGCATTGCATGGGGG+AGG - chr5.3:8439497-8439516 MS.gene43541:intron 55.0%
GACACTGGTACAGCCGTTGT+GGG - chr5.3:8441412-8441431 MS.gene43541:CDS 55.0%
GATGAAGTTCTCGCATGCCC+TGG + chr5.3:8440087-8440106 None:intergenic 55.0%
GCACTGTGATATAGCGCCCA+GGG - chr5.3:8440067-8440086 MS.gene43541:intron 55.0%
GGCTTTCACACGGAGGTCAA+AGG + chr5.3:8437440-8437459 None:intergenic 55.0%
GGTCGGTCACTGTCATCAAC+AGG + chr5.3:8440506-8440525 None:intergenic 55.0%
GTCAGGCCATAGCCATCACA+TGG - chr5.3:8437460-8437479 MS.gene43541:intron 55.0%
TCCTTACACCGAGCCAGATG+AGG - chr5.3:8441113-8441132 MS.gene43541:intron 55.0%
TGATGACAGTGACCGACCTC+TGG - chr5.3:8440508-8440527 MS.gene43541:intron 55.0%
TGCACTGTGATATAGCGCCC+AGG - chr5.3:8440066-8440085 MS.gene43541:intron 55.0%
!! CCTACTGGTACTGGTAGAGG+TGG - chr5.3:8440266-8440285 MS.gene43541:intron 55.0%
!! GGCACCGGTGAATGCAAAGA+TGG - chr5.3:8439742-8439761 MS.gene43541:intron 55.0%
!! TCCTCATCTGGCTCGGTGTA+AGG + chr5.3:8441117-8441136 None:intergenic 55.0%
!! TCTGGAGGTACAGGTGTTGG+CGG - chr5.3:8441334-8441353 MS.gene43541:intron 55.0%
ACACTACTGGCGCTGCTTCC+CGG - chr5.3:8439916-8439935 MS.gene43541:intron 60.0%
ACCTCCGTGTGAAAGCCGTC+AGG - chr5.3:8437443-8437462 MS.gene43541:intron 60.0%
ACTGCATTGCATGGGGGAGG+TGG - chr5.3:8439500-8439519 MS.gene43541:intron 60.0%
ATCGACCGATGGAGCTCCTC+AGG - chr5.3:8439601-8439620 MS.gene43541:intron 60.0%
CGACACTGGTACAGCCGTTG+TGG - chr5.3:8441411-8441430 MS.gene43541:CDS 60.0%
GAACCTGCTGCTGTCGACAC+TGG - chr5.3:8441397-8441416 MS.gene43541:CDS 60.0%
GAATGGGCAACCGAATGGGG+AGG - chr5.3:8435325-8435344 MS.gene43541:CDS 60.0%
GAGTGCCTGAGGAGCTCCAT+CGG + chr5.3:8439609-8439628 None:intergenic 60.0%
GCTGCATCTGCCGCAGTACA+TGG - chr5.3:8439641-8439660 MS.gene43541:intron 60.0%
GGTGGCGATCCTACTGGTAC+TGG - chr5.3:8440257-8440276 MS.gene43541:intron 60.0%
! GTGTCGACAGCAGCAGGTTC+CGG + chr5.3:8441397-8441416 None:intergenic 60.0%
!! ACAGGTGTTGGCGGTGGTGT+TGG - chr5.3:8441343-8441362 MS.gene43541:intron 60.0%
!! GTACCAGTGTCGACAGCAGC+AGG + chr5.3:8441403-8441422 None:intergenic 60.0%
CTGGAAGGAGCTCCTCACCG+AGG - chr5.3:8439051-8439070 MS.gene43541:intron 65.0%
GAAGGAGCTCCTCACCGAGG+AGG - chr5.3:8439054-8439073 MS.gene43541:intron 65.0%
GCATTGCATGGGGGAGGTGG+TGG - chr5.3:8439503-8439522 MS.gene43541:intron 65.0%
GCCTGACGGCTTTCACACGG+AGG + chr5.3:8437447-8437466 None:intergenic 65.0%
TCGACAGCAGCAGGTTCCGG+TGG + chr5.3:8441394-8441413 None:intergenic 65.0%
TGTGGCTGGTGACAGGGCAC+CGG - chr5.3:8439727-8439746 MS.gene43541:intron 65.0%
!! GCATGGGGGAGGTGGTGGAA+AGG - chr5.3:8439508-8439527 MS.gene43541:intron 65.0%
!! GGAGGTACAGGTGTTGGCGG+TGG - chr5.3:8441337-8441356 MS.gene43541:intron 65.0%


Chromosome Type Strat End Strand Name
chr5.3 gene 8435277 8441489 8435277 ID=MS.gene43541
chr5.3 mRNA 8435277 8441489 8435277 ID=MS.gene43541.t1;Parent=MS.gene43541
chr5.3 exon 8441362 8441489 8441362 ID=MS.gene43541.t1.exon1;Parent=MS.gene43541.t1
chr5.3 CDS 8441362 8441489 8441362 ID=cds.MS.gene43541.t1;Parent=MS.gene43541.t1
chr5.3 exon 8441219 8441281 8441219 ID=MS.gene43541.t1.exon2;Parent=MS.gene43541.t1
chr5.3 CDS 8441219 8441281 8441219 ID=cds.MS.gene43541.t1;Parent=MS.gene43541.t1
chr5.3 exon 8440639 8440742 8440639 ID=MS.gene43541.t1.exon3;Parent=MS.gene43541.t1
chr5.3 CDS 8440639 8440742 8440639 ID=cds.MS.gene43541.t1;Parent=MS.gene43541.t1
chr5.3 exon 8437834 8437925 8437834 ID=MS.gene43541.t1.exon4;Parent=MS.gene43541.t1
chr5.3 CDS 8437834 8437925 8437834 ID=cds.MS.gene43541.t1;Parent=MS.gene43541.t1
chr5.3 exon 8437658 8437747 8437658 ID=MS.gene43541.t1.exon5;Parent=MS.gene43541.t1
chr5.3 CDS 8437658 8437747 8437658 ID=cds.MS.gene43541.t1;Parent=MS.gene43541.t1
chr5.3 exon 8437488 8437563 8437488 ID=MS.gene43541.t1.exon6;Parent=MS.gene43541.t1
chr5.3 CDS 8437488 8437563 8437488 ID=cds.MS.gene43541.t1;Parent=MS.gene43541.t1
chr5.3 exon 8437003 8437364 8437003 ID=MS.gene43541.t1.exon7;Parent=MS.gene43541.t1
chr5.3 CDS 8437003 8437364 8437003 ID=cds.MS.gene43541.t1;Parent=MS.gene43541.t1
chr5.3 exon 8436607 8436863 8436607 ID=MS.gene43541.t1.exon8;Parent=MS.gene43541.t1
chr5.3 CDS 8436607 8436863 8436607 ID=cds.MS.gene43541.t1;Parent=MS.gene43541.t1
chr5.3 exon 8436237 8436525 8436237 ID=MS.gene43541.t1.exon9;Parent=MS.gene43541.t1
chr5.3 CDS 8436237 8436525 8436237 ID=cds.MS.gene43541.t1;Parent=MS.gene43541.t1
chr5.3 exon 8435581 8435691 8435581 ID=MS.gene43541.t1.exon10;Parent=MS.gene43541.t1
chr5.3 CDS 8435581 8435691 8435581 ID=cds.MS.gene43541.t1;Parent=MS.gene43541.t1
chr5.3 exon 8435277 8435480 8435277 ID=MS.gene43541.t1.exon11;Parent=MS.gene43541.t1
chr5.3 CDS 8435277 8435480 8435277 ID=cds.MS.gene43541.t1;Parent=MS.gene43541.t1
Gene Sequence

>MS.gene43541

ATGGGGAAGAAGCAACACAGCAAAGACCGAATGTTCTTAACCAAAACTGAATGGGCAACCGAATGGGGAGGTTACAAATCCAAAGAAAATCGCACCGTTTTTAAACGTCTTCCTTTTTATTGCTGCGCGTGCGTTCTCTCTTTACACCTTCATCCTTTCATTGAATCAATTTTTCATTCAACTAATAATTTTGTTTTGATTTATTCAGACTTACTTTTACTCCGTTTGAGTTTCCAGTTTGTACACCGGATGGCAGCGTCTTCGATGTTATGTAAGTATCTCTCTGATTCGATTATTTGCAGCTTATAGCTTAAGCGCTTATGTGTAAACTATTTATATAACAAAAGATAAACTCAAGTGAAATTGTTTTTATATAAGCTATTGTATACTTTCATAAGCTATCTTGCAGAGTTTATGTAAATAAGGTGAAATTAGTTTATGAACATGTCATGAGCTGTTTTCGCAAGTTCTCGCTAACAGTCTCAGAAGTGTTTATGCTAAATTGCTAATAGATAAGTTCAAATAAGCCAATCTGAATAAGTTGTATGTCATGATTTTAAGTTTTTTATATCTGCTTCATTGTATGTTTGGAATCACGGTGAGTATAAGGAAATTATGATGACACTGTACTTTTGTTGAAGCTCTAAAATGTAGCTTTTATCAAAATCGTGTGATTATGACAAATTTACCGTCAATCCAAATATGCACTCTATTGATAATAACTTGTGGTTTTCAACTTGGGTTCAGGAACATAACTCCATATATTATAAAATATGGTAAACATCCTGTTACTGGAGCTCCCTTGAAGCAGCAAGATCTCATTCCACTAACTTTTCACAAGAACTCAGAAGGTAAATACACTTCTGCATCATTTTTGTGCATTCTTTTGGATTTATTTTCATTTTTGTTTCATGATTGAGTTCATTGCTTAGGTGCAGTTGTGAGTTGAGCTTCGGATTGACGTAGGGGATTGATTGTTATTGTTGAAAACTTAAATATTGTATATGTAGTATTGCCTATTGGCCAAAATGGTTTAGACCATAGTAGTATCTCTCCTATTATGTTTTGGGATGATGGAATATTTTTATTCCTTAAAAAGTTGTTGTGTTTGTCAAATGGTTTTCCCTTAAATATGAAAATACAATCACAGGTCGAGTGTAGTGTACTTGGTAGGAGCATAGTTTTTTTTTTGAAATATTGGTAGGGGCCTAGTTAATTAGTTAGTTAATTCCCTTGGCATACTTTTAATTTCTGGCACTTATGTCATTGAATGCAAAAGCTCGAGGACCTTATTCTGCCAAACATAATGGACATTTTTTTCATTGTTCTAGTGTGTTAATTCAATGTATAGGTAAATCTCCCTCCCCCTAAAAAACCTGAAGAATGACTTTCTTTTCTTATATATAGTTGTTTTAACATTGATCAGGAGAAAAGAAATTTAATCAGTCGTAATAATGGTGGATGATGGGTCATGACAGAAGCCTAAATCTGCCGTAGCAACATACTGACATGGCATGTTATGCTGTAGCCTATGGTGAAAGCAGGGTGGCTATAATAAAAATATGGTATATGCAAAACACGTAGAAAAAACAGCAGAATATAATGAAATGAAAAAGATTTAATAACCTATTGTAATAAATAAGATTCACCATAAGTATCTTTATTAGCAGCCCTTGAACCACTGAACAACGGGTAAGGGATTGTAATGAAATAAATAAATATGACAAAACGGATAAGGAAATACAGATTGACCGAGAGTAAAAAAAACAGAATACAGGACAGGGATTGAGACCCAGAAAAGAGATAAATGAAGAAAAGGAAATGACTAAGATACTGGGCAAATAATCAGGGATATGCAATTTCTGAAGATAAGCTGTTTTCCAGTTACGATCCATGCGAATGAGATGATAGAATGTGGGAGCAACTGAGCTTGAACCTTTGATCATGATCGGAGACATGGAAATGAGAGTGGTCTGAAATGACGTGTGAGAGTGAGAACAAAGATATGCGGTTTTTTGTTGGCATTTCATAGGTCATCATTACTCATTAGAGTTTTTCAAGTGTTCTCTCTGTTTTTTTTTTCTCTTTTCAAAATTTTATTTAGCGACTCTTTCCACTAGGCTTGCTGAACTGTTAAGCCTGCTATGAAATTAGACGTTACCTTTGACCTCCGTGTGAAAGCCGTCAGGCCATAGCCATCACATGGTATTTTGTCAAAAATGCAGCACATTATACTACCTTGGTACCACCTTATTACAGCATTGAGTTTAATACATGGAAAAGTGCAGTGAATTTTAGCACATGGAAGACGTTGATCATAATAGGATATTATGGTGTTGTTTGTTCTATGTGGCTGACCTCACTTTCTAACGAAATTCTTTGATTGTTATTATTGTTGAAGAGTGTAGTAAATTTTGCATTCGTTTGAGTTTTCTACCCCTTATCATGCAAATACGTGTTTACATTTTTAACGGGTGTACACTCAAAACGACTGCATAAGCTTTGTCAAATGGGGTAACACATTTGTTTTCTTTGGCTTTGGTGGATTAGAATGTGAGGGTCTTTAGGAGAGAAACAGTTTGTCACACACCCAAATAATAAGGAAGAAAGTAGAAGCCACTTTTCTAGTTACTTTGATTGTAATGAAGGATTATACATAGGTTTTGACCCTTTCTGTTTTTCAAGCTTTAATACTGAATAGAGATGTCTCTCCGAGAATCAGCATGGTGTACAATGATTTAAGGATTGGATTAAAAATTTTGAAGTGTACACTGTACTATTATAGTATGGAGGAGAATTATGAAAGATTCTGTACCACTGTAATGGTGCTGCCTATAGCCTAAGTCTGGGATTTGTTTCAGGTCACACTTTCTACACTGAATCTATAACCATCAACAAAAGTTAATTTAAGCGGCATGTTTGGGAGAACTTCCTAGGATTCTAATACTGTTCTACCGGACTAAAAATTGAAAGTTTTACTACACTAAAATTTGATTTCAAGAACTTACTAATTATTTCTGCAAAACTGAGATCCTGAATTCTTACAAGCTAACGCGAAAGAAACAAAATGGCGCGATTCTCTTTCAGCTTAACTATTGGTCTCTAGTTCACATACCTAGCGTTGGGAATTCTTGAGGAAGGGTTTGTATATGGTCTTATCCGACTCTATACCAAATAACTAACAGAAAAAACTTCAAATTTGCTAGATGTGTCACTCTTCATGTAATGCCAATATATGTAACTGTTGCTCAAAAGTCCAAATTAAACTATTTTCAATAGTCAATGAATTCTTTTGCTAGTTAGACTTGCTGAGATATTCTCCGAAACTGGTCAACTAAGCATAAGCACATTTGTTTTGTTCTTTGAGATTTCATGGGTATTATTCTTGCAAAGTTGTGTTATTGTTTAAACTAAAATTTCTCATGTTACATACGATTTTTTTATGTTATTTGAGGATAAGGTGTGGATGGGATGCATTTATGATTTTCTGGTAGATGCTTGTCATATATTCATTTAGTTTGCTGGCTGCTTTGTATTGAATGGCCTTTCTTTGTTACTCTGCAGGAGAATATCACTGTCCAGTGCTAAACAAAGTTTTCACTGAATTTACCCACATTGTGGCAGTCAAAACTACTGGAAATGTCTTCTGCTATGAGGTTTGTTTTTCCAGGATCCTTAGTGTTAACACTGCTAATTTAATTTGTAGATGGTATTTTTATATATGTATGTTTGTGGGAAATAGGCTGTTAAAGAGTTAAACATCAAGACAAAAAACTGGAAGGAGCTCCTCACCGAGGAGGCATTTACTAGGGATGACCTTATAACAATTCAGGTCAGTTGGCTTTGATTGAGAATATTTTCTGCATATTGCTTTATCTTTCACTGTCTTGATACCATGTTGATGTTTGTGTATGTGTGCTTTGCAGAATCCTAATGCACTTGATCAGAAGGTTCTTCTGGATTTTGATCATGTTAAACAGAATTTGAAAATTGACGATGAAGGTATGATACATCCTGCAACTCATCCATATTTTCTGAGCTACTGATCTCTTGCTGATCTTGATATTGCTGCTTTTATTGTTGTTATTTTTATTAGCTTTAAGATTTTCCGTTTTCTTTACTCAGAACTACAGAAAATGAGTTCAGATCCAGCCTATAACATAAACATGTCGGGAGATATCAAACAAATGCTTAAAGAGCTTGGAACTGAGCAAGGAAAGGAAACTGCATTGCATGGGGGAGGTGGTGGAAAGGCACAAAAAGAAAGGGCCGCTGCACTCGCTGCCATTTTAGCTGCACGATCACAAGTTAAAGAAGATTCCAAATCGACCGATGGAGCTCCTCAGGCACTCAGTATTGTAGATGCTGCATCTGCCGCAGTACATGGAAGAAGTGCAGCTGCTGCTAAAGCCTCATCAAGTGATAAAACTGCTGCCAGAATAGCTATGCATGTGGCTGGTGACAGGGCACCGGTGAATGCAAAGATGGTGAGCTTCCTAAATACTTCTTTTTGACCTACCTATTGATACATCTCATGCATAATCAAATTATATATGATCCTTTTTAAAAATTGTATGAAGGGCCAGTAATCATTATTCTATGTATTAATGAAGTTCTCAATTTCAGGTTAAAAGTCGTTACACTACTGGCGCTGCTTCCCGGTCTTTTACTTCTACATCATATGATCCAGTTACAAAAAATGATTATGAATATGTGAAAGTTGAGAAGAATCCAAAGAAGAAGGGATATGTACAACTGCATACAACACACGGTGATTTGAACATTGAGCTGCACTGTGATATAGCGCCCAGGGCATGCGAGAACTTCATCACGCTTTGTGAACGTGGATATTATAACGGAGTTGCTTTTCATAGAAGCATTAGGTATGTGACCACCTTTGTGTCTTTGTCCTTGTAGTAAATCAAGAGTGACATTCGTCGAGTCTTATAGTCCATTTTATGCAGGAATTTTATGATACAAGGTGGCGATCCTACTGGTACTGGTAGAGGTGGTGAATCAATTTGGGGAAAGCCTTTTAAGGATGAACTTAACTCCAAATTAGTCCACTCTGGAAGGGGTGTAGTTAGCATGGCAAACAGTGGCCCACATACTAATGGTTCCCAGTTTTTCATATTGTACAAATCTGCAAATCATTTAAACTTCAAACATACAGTTTTTGGAGGCGTAGTTGGTGGATTGACTACACTAGCAACAATGGAAAAGGTTCCTGTTGATGACAGTGACCGACCTCTGGTGAGTCGTAAATTAATTTCACTGTTGATGCAATAGACTGACCCCCACTCTCTCTTTTTCTGGTTTTATTCTTTTCAAACTATATTTACAAACATATGATCCAAAAATTTAGACCTGATTTAGAAAAAAAAGTAGATTCTTCTGCCATTGTACATTCTGTTATCTTTTGCACGGATATGTTTGTACCTTTGCATCTGTCTAGCTGGTTTGGACCTTGGGTTTCACTCATTAAATTTTCATTATGGGTACTGCAGTCTGCATATCCCTGTTCCAGGCCTTAGGATTACAATATTTTGCACTGTCATTTGTGAACATTGAGGTTTTGGACTATCTTGAGTACAGTGGAATACTTGTGTCTCATCATTCCTCAAGAGCTTATTTTTTAAATGGTCGCATGTTTTCTCATGATTTGAAGAGTTGATATTTAACAACAATGCTTGCTGGGACATTTGACGTCTTTTGAATGATCCATTAACAATTATCAACTGGGCCATGCTGTCAACACAAACAATGGATTACATGCTTATTTATTCTTTGGCTTGCAGGAGGAAATCAAGATAACAGGTGTCACAACTTTTGTCAATCCTTACACCGAGCCAGATGAGGAAGAAGAGCAAGCTAATGCCAAAGAGAAGAATGCAAATGATGAAGAAAATGTTTGTTCCATAATATTTGAGATTACTTATTGTTTGTATTTTTTTCTCACTTTTATAAGGTTTTTGTGAACTAACCCTTATTCTTTGGTTCGCATTTCAGGACAAGGTTGGCTCATGGTATAGTAATCCTGGAGCTGGAACATCTGAATCTGGAGGTACAGGTGTTGGCGGTGGTGTTGGCAAATACTTGAAAGCTAGGAATGCTCCACCGGAACCTGCTGCTGTCGACACTGGTACAGCCGTTGTGGGAAAGAAGAGAAAAGCAGTTGTCAGTGGTGAATTTAAAGATTTTTCTGGATGGTAG
Protein sequence

>MS.gene43541.t1

MGKKQHSKDRMFLTKTEWATEWGGYKSKENRTVFKRLPFYCCALTFTPFEFPVCTPDGSVFDVMNITPYIIKYGKHPVTGAPLKQQDLIPLTFHKNSEGEYHCPVLNKVFTEFTHIVAVKTTGNVFCYEAVKELNIKTKNWKELLTEEAFTRDDLITIQNPNALDQKVLLDFDHVKQNLKIDDEELQKMSSDPAYNINMSGDIKQMLKELGTEQGKETALHGGGGGKAQKERAAALAAILAARSQVKEDSKSTDGAPQALSIVDAASAAVHGRSAAAAKASSSDKTAARIAMHVAGDRAPVNAKMVKSRYTTGAASRSFTSTSYDPVTKNDYEYVKVEKNPKKKGYVQLHTTHGDLNIELHCDIAPRACENFITLCERGYYNGVAFHRSIRNFMIQGGDPTGTGRGGESIWGKPFKDELNSKLVHSGRGVVSMANSGPHTNGSQFFILYKSANHLNFKHTVFGGVVGGLTTLATMEKVPVDDSDRPLEEIKITGVTTFVNPYTEPDEEEEQANAKEKNANDEENDKVGSWYSNPGAGTSESGGTGVGGGVGKYLKARNAPPEPAAVDTGTAVVGKKRKAVVSGEFKDFSGW