AlfalfaGEDB | MS.gene44008

M. sativa cultivar XinJiangDaYe / MS.gene44008

KEGG: K10046
GO: GO:0000166 GO:0003674 GO:0003824 GO:0005488 GO:0016853 GO:0016854 GO:0016857 GO:0036094 GO:0047918 GO:0048037 GO:0050662 GO:0051287 GO:0097159 GO:1901265 GO:1901363
PFAM: PF01370.24 PF16363.8

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene44008.t1	XP_013468987.1	96.8	379	4	1	1	371	1	379	1.20E-215	758.8

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene44008.t1	Q93VR3	89.4	377	32	1	1	369	1	377	6.2e-202	704.5

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene44008.t1	A0A072VNM9	96.8	379	4	1	1	371	37	415	8.3e-216	758.8

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network:

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049351	MS.gene44008	0.832574	8.75E-56	-1.69E-46
MS.gene049661	MS.gene44008	0.806764	7.02E-50	-1.69E-46
MS.gene049662	MS.gene44008	0.8066	7.60E-50	-1.69E-46
MS.gene049758	MS.gene44008	0.844265	8.42E-59	-1.69E-46
MS.gene050301	MS.gene44008	0.8567	2.69E-62	-1.69E-46
MS.gene050432	MS.gene44008	0.819538	1.10E-52	-1.69E-46
MS.gene050558	MS.gene44008	0.812126	4.96E-51	-1.69E-46
MS.gene050787	MS.gene44008	0.806652	7.41E-50	-1.69E-46
MS.gene05101	MS.gene44008	0.811888	5.59E-51	-1.69E-46
MS.gene05119	MS.gene44008	-0.813694	2.25E-51	-1.69E-46

Showing 1 to 10 of 57 entries

Previous1 2 3 4 5 6Next

PPI:

Show entries

Search:

Gene1	Gene2	Type
MS.gene064894	MS.gene44008	PPI
MS.gene44008	MS.gene68222	PPI
MS.gene44008	MS.gene063165	PPI
MS.gene44008	MS.gene014281	PPI

Showing 1 to 4 of 4 entries

Previous1Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene44008.t1	MTR_1g080950	96.834	379	4	1	1	371	1	379	0.0	764
MS.gene44008.t1	MTR_1g080950	96.834	379	4	1	1	371	37	415	0.0	761
MS.gene44008.t1	MTR_7g115080	88.889	378	32	3	1	369	35	411	0.0	704
MS.gene44008.t1	MTR_7g115080	88.889	378	32	3	1	369	1	377	0.0	702
MS.gene44008.t1	MTR_7g115080	88.889	378	32	3	1	369	14	390	0.0	701
MS.gene44008.t1	MTR_4g120030	27.215	316	203	9	29	332	112	412	5.11e-24	102
MS.gene44008.t1	MTR_1g088480	26.154	325	211	10	28	339	118	426	2.17e-22	98.2
MS.gene44008.t1	MTR_2g096660	27.389	314	195	12	28	323	38	336	1.95e-20	91.7
MS.gene44008.t1	MTR_4g063600	26.837	313	198	10	28	323	32	330	5.12e-20	90.5
MS.gene44008.t1	MTR_4g063600	26.837	313	195	11	28	323	32	327	1.02e-18	86.7

Showing 1 to 10 of 16 entries

Previous1 2Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene44008.t1	AT5G28840	89.390	377	32	1	1	369	1	377	0.0	709
MS.gene44008.t1	AT5G28840	89.390	377	32	1	1	369	1	377	0.0	709
MS.gene44008.t1	AT3G62830	26.543	324	216	10	28	339	119	432	2.11e-24	104
MS.gene44008.t1	AT3G62830	26.543	324	216	10	28	339	119	432	2.11e-24	104
MS.gene44008.t1	AT2G47650	26.625	323	215	10	28	338	121	433	4.66e-24	103
MS.gene44008.t1	AT2G47650	26.140	329	215	9	28	338	121	439	5.13e-24	103
MS.gene44008.t1	AT3G53520	26.829	328	217	11	26	340	118	435	1.57e-23	101
MS.gene44008.t1	AT3G53520	25.212	353	214	12	26	340	118	458	6.63e-21	94.4
MS.gene44008.t1	AT2G28760	27.687	307	199	11	28	321	31	327	1.12e-20	92.4
MS.gene44008.t1	AT2G28760	27.687	307	199	11	28	321	31	327	1.12e-20	92.4

Showing 1 to 10 of 30 entries

Previous1 2 3Next

Find 99 sgRNAs with CRISPR-Local

Find 164 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATTTCCATCACTGGTGC+TGG	0.368034	1.3:+57371484	MS.gene44008:CDS
AAATATTGGAAGTGATGAGA+TGG	0.614662	1.3:+57372925	MS.gene44008:CDS
AAATTTCCATCACTGGTGCT+GGG	0.477839	1.3:+57371485	MS.gene44008:CDS
AAATTTGAGATGTGGGGAGA+TGG	0.493691	1.3:+57372432	MS.gene44008:CDS
AACTACTAATGTCAGCTTGA+AGG	0.417690	1.3:+57371983	MS.gene44008:CDS
AACTGCTTAACGGTTACTGA+AGG	0.567633	1.3:+57371649	MS.gene44008:CDS
AAGCACTACAACAAAGATTT+CGG	0.376422	1.3:+57372175	MS.gene44008:CDS
AAGCTTAAAATTTCCATCAC+TGG	0.443314	1.3:+57371478	MS.gene44008:CDS
AATAAAAGAGAAACTTGGCT+GGG	0.602593	1.3:+57373068	MS.gene44008:CDS
AATCGCGAACAAACCTCAGC+AGG	0.536092	1.3:-57372020	None:intergenic

Showing 1 to 10 of 99 entries

Previous1 2 3 4 5…10Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
AAATATTGGAAGTGATGAGA+TGG	+	chr1.3:57372925-57372944	MS.gene44008:CDS	30.0%
AAATGCATCAAACAACCAAA+AGG	-	chr1.3:57372046-57372065	None:intergenic	30.0%
AAATTCTGGTATTGTAGGAT+GGG	+	chr1.3:57373310-57373329	MS.gene44008:intron	30.0%
AAGCAACAAACTCATTACAT+CGG	-	chr1.3:57372346-57372365	None:intergenic	30.0%
AAGCACTACAACAAAGATTT+CGG	+	chr1.3:57372175-57372194	MS.gene44008:CDS	30.0%
AAGCTTAAAATTTCCATCAC+TGG	+	chr1.3:57371478-57371497	MS.gene44008:CDS	30.0%
AATAAAAGAGAAACTTGGCT+GGG	+	chr1.3:57373068-57373087	MS.gene44008:CDS	30.0%
ATTACATTATTGCTTCTGAC+TGG	+	chr1.3:57371554-57371573	MS.gene44008:CDS	30.0%
CAAAAGGACCATATATGTTA+TGG	-	chr1.3:57372225-57372244	None:intergenic	30.0%
CAGCATCACAAATATTTGTT+CGG	-	chr1.3:57371849-57371868	None:intergenic	30.0%

Showing 1 to 10 of 164 entries

Previous1 2 3 4 5…17Next

Chromosome	Type	Strat	End	Strand	Name
chr1.3	gene	57371400	57373488	57371400	ID=MS.gene44008
chr1.3	mRNA	57371400	57373488	57371400	ID=MS.gene44008.t1;Parent=MS.gene44008
chr1.3	exon	57371400	57371809	57371400	ID=MS.gene44008.t1.exon1;Parent=MS.gene44008.t1
chr1.3	CDS	57371400	57371809	57371400	ID=cds.MS.gene44008.t1;Parent=MS.gene44008.t1
chr1.3	exon	57371932	57372028	57371932	ID=MS.gene44008.t1.exon2;Parent=MS.gene44008.t1
chr1.3	CDS	57371932	57372028	57371932	ID=cds.MS.gene44008.t1;Parent=MS.gene44008.t1
chr1.3	exon	57372127	57372256	57372127	ID=MS.gene44008.t1.exon3;Parent=MS.gene44008.t1
chr1.3	CDS	57372127	57372256	57372127	ID=cds.MS.gene44008.t1;Parent=MS.gene44008.t1
chr1.3	exon	57372376	57372508	57372376	ID=MS.gene44008.t1.exon4;Parent=MS.gene44008.t1
chr1.3	CDS	57372376	57372508	57372376	ID=cds.MS.gene44008.t1;Parent=MS.gene44008.t1
chr1.3	exon	57372895	57372946	57372895	ID=MS.gene44008.t1.exon5;Parent=MS.gene44008.t1
chr1.3	CDS	57372895	57372946	57372895	ID=cds.MS.gene44008.t1;Parent=MS.gene44008.t1
chr1.3	exon	57372979	57373110	57372979	ID=MS.gene44008.t1.exon6;Parent=MS.gene44008.t1
chr1.3	CDS	57372979	57373110	57372979	ID=cds.MS.gene44008.t1;Parent=MS.gene44008.t1
chr1.3	exon	57373327	57373488	57373327	ID=MS.gene44008.t1.exon7;Parent=MS.gene44008.t1
chr1.3	CDS	57373327	57373488	57373327	ID=cds.MS.gene44008.t1;Parent=MS.gene44008.t1

Gene Sequence

>MS.gene44008

ATGGGAAGTACTGGAAAAACTAACTATGGAGAATACACCTATGAGAATCTTGAGAGAGAGCCTTACTGGCCATCAGAAAAGCTTAAAATTTCCATCACTGGTGCTGGGGGTTTTATTGCGTCGCACTTAGCTCGACGTCTCAAGAAGGAGGGACATTACATTATTGCTTCTGACTGGAAGAAAAATGAGCACATGACTGAGGATATGTTCTGTGATGAATTCCATCTTGTTGATCTCAGGGTCATGGATAACTGCTTAACGGTTACTGAAGGGGTTGACCATGTTTTCAATCTTGCCGCTGATATGGGTGGAATGGGCTTTATTCAGTCCAATCATTCTGTTATTATGTATAACAACACAATGATTAGTTTCAATATGATTGAAGCTGCTAGGATTAATGGCATTAAGAGGTTAGTATCTTGTACATCATGTTTTTGGACCTATAACCGAACAAATATTTGTGATGCTGTGTTAGTTTCAATTATATGACGTACTTTACTCACGCCAATTGCAAAAAATGTGTCCTTTTCAGGTTCTTTTATGCCTCAAGTGCTTGTATCTACCCTGAATTTAAACAGTTAGAAACTACTAATGTCAGCTTGAAGGAGTCTGATGCATGGCCTGCTGAGGTTTGTTCGCGATTCCTTTTGGTTGTTTGATGCATTTTGGTTCTTTATTTTTACATTAGGCTTGGGATTGATGTGTTCATTTTGATGAATGTGTTTAGCCACAAGATGCGTATGGGCTAGAGAAGCTTGCAACAGAGGAGATTTGCAAGCACTACAACAAAGATTTCGGAATTGAGTGCCGCATTGGGAGGTTCCATAACATATATGGTCCTTTTGGAACATGGAAAGGTATGCTCTTAACTGAATTGTAAATTTTGTTATTTTGTCTTTTCCGAATAAGCAAATTAGTAGATTTTTTAATTTTGGTAAGCTTACCGATGTAATGAGTTTGTTGCTTTGTCATACAGGTGGAAGGGAGAAGGCTCCTGCTGCTTTTTGTCGGAAAGCAATCACGTCTACAGACAAATTTGAGATGTGGGGAGATGGTTTGCAAACACGATCATTTACCTTCATTGATGAGTGTGTTGAAGGTGTACTTAGGTAGGTCTTGGCTGATTGTTTGGTTTGGTTTTTCCAGCTTTATTCATGTGTTTTTTCTTGAGTTTCTCTGTTTGAATTATAATTTTGAGCTTATGGTTTCTATGATTGATGTAAACAGAACCATTTAACCAAACTTTTCATGTTTGAGCTGTTCTAAGGGTTCGTCAATTTCATTAAGTAGTTTCTTTACAAAATCCAGTTAGCTCACTCAATCAACATTATTGCATTAAATGACATTGAGAGGGTTTACTGCTTCTGTATAATTTTAGTATCCGTAATTGGTTGGGATAGGGAAAATGATACGGTGTTTGTCAAGCAATTGTTTCATCTTTTATTTCATGTATTCTATGATAAGCCCTGACAATTTGGTCTGTTGTTATGTTTAGACTGACTAAATCCGATTTCCGCGAGCCGGTAAATATTGGAAGTGATGAGATGGTCAGCAACTCAGCATGAATGAGATGGCTGAGATCGTTCTTGGTTTTGAGGACAAGAAGACTCCTATACATCACATTCCTGGCCCAGAGGGTGTTCGTGGTCGTAACTCAGACAATACACTAATAAAAGAGAAACTTGGCTGGGCTCCAACAATGAAGTTGAAGGTATAAAATGACTCCTTCCTTCTTTCTTGTGTCTTAATAAGTTTTTATCCAATTTGGCTCCTTCATCTTCTTTCAGAAAGTGTAATGGAATTTTTAGGTTTTGTACTCATTGACAAAATTCACAGTTGATCTTGTCCTTTCCTATTGTTTGACTTTAATGAATATTCAAAGGGTTCTGTGTATATTTACAGCAGTATCTAAATTCTGGTATTGTAGGATGGGCTGAGGATTACATATGTCTGGATTAAGGAACAACTTGAAAAGGAGAAGGCTCAAGGTCTTGATACATCAGGATACGGCTCATCAAAAGTGGTGCAAACCCAAGCACCGGTCCAATTAGGCTCACTTCGGGCAGCAGACGGCAAAGAGAGTAGTTAA

Protein sequence

>MS.gene44008.t1

MGSTGKTNYGEYTYENLEREPYWPSEKLKISITGAGGFIASHLARRLKKEGHYIIASDWKKNEHMTEDMFCDEFHLVDLRVMDNCLTVTEGVDHVFNLAADMGGMGFIQSNHSVIMYNNTMISFNMIEAARINGIKRFFYASSACIYPEFKQLETTNVSLKESDAWPAEPQDAYGLEKLATEEICKHYNKDFGIECRIGRFHNIYGPFGTWKGGREKAPAAFCRKAITSTDKFEMWGDGLQTRSFTFIDECVEGVLRLTKSDFREPVNIGSDEMIVLGFEDKKTPIHHIPGPEGVRGRNSDNTLIKEKLGWAPTMKLKDGLRITYVWIKEQLEKEKAQGLDTSGYGSSKVVQTQAPVQLGSLRAADGKESS