Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene44251.t1 | XP_003629329.1 | 84.8 | 342 | 5 | 1 | 1 | 295 | 1 | 342 | 5.00E-145 | 523.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene44251.t1 | G7LC55 | 84.8 | 342 | 5 | 1 | 1 | 295 | 1 | 342 | 3.6e-145 | 523.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049596 | MS.gene44251 | 0.809367 | 1.96E-50 | -1.69E-46 |
| MS.gene049622 | MS.gene44251 | 0.820795 | 5.68E-53 | -1.69E-46 |
| MS.gene049989 | MS.gene44251 | 0.868566 | 5.94E-66 | -1.69E-46 |
| MS.gene050297 | MS.gene44251 | 0.836417 | 9.48E-57 | -1.69E-46 |
| MS.gene05124 | MS.gene44251 | 0.837136 | 6.21E-57 | -1.69E-46 |
| MS.gene051742 | MS.gene44251 | 0.851831 | 6.87E-61 | -1.69E-46 |
| MS.gene051816 | MS.gene44251 | 0.842007 | 3.36E-58 | -1.69E-46 |
| MS.gene051896 | MS.gene44251 | 0.815093 | 1.10E-51 | -1.69E-46 |
| MS.gene051914 | MS.gene44251 | 0.833624 | 4.79E-56 | -1.69E-46 |
| MS.gene051955 | MS.gene44251 | 0.867678 | 1.15E-65 | -1.69E-46 |
| MS.gene052143 | MS.gene44251 | 0.879824 | 9.09E-70 | -1.69E-46 |
| MS.gene052169 | MS.gene44251 | 0.811948 | 5.42E-51 | -1.69E-46 |
| MS.gene052308 | MS.gene44251 | 0.923096 | 4.16E-89 | -1.69E-46 |
| MS.gene052367 | MS.gene44251 | 0.90249 | 9.19E-79 | -1.69E-46 |
| MS.gene052383 | MS.gene44251 | 0.815078 | 1.11E-51 | -1.69E-46 |
| MS.gene053173 | MS.gene44251 | 0.876033 | 1.93E-68 | -1.69E-46 |
| MS.gene053348 | MS.gene44251 | 0.849493 | 3.12E-60 | -1.69E-46 |
| MS.gene053416 | MS.gene44251 | 0.856632 | 2.82E-62 | -1.69E-46 |
| MS.gene053417 | MS.gene44251 | 0.856737 | 2.63E-62 | -1.69E-46 |
| MS.gene05369 | MS.gene44251 | 0.805761 | 1.14E-49 | -1.69E-46 |
| MS.gene054551 | MS.gene44251 | 0.884248 | 2.25E-71 | -1.69E-46 |
| MS.gene054552 | MS.gene44251 | 0.808843 | 2.54E-50 | -1.69E-46 |
| MS.gene054593 | MS.gene44251 | 0.871646 | 5.83E-67 | -1.69E-46 |
| MS.gene054633 | MS.gene44251 | 0.850908 | 1.25E-60 | -1.69E-46 |
| MS.gene054662 | MS.gene44251 | 0.8479 | 8.63E-60 | -1.69E-46 |
| MS.gene054941 | MS.gene44251 | 0.807827 | 4.18E-50 | -1.69E-46 |
| MS.gene055308 | MS.gene44251 | 0.879439 | 1.25E-69 | -1.69E-46 |
| MS.gene055578 | MS.gene44251 | 0.8951 | 1.32E-75 | -1.69E-46 |
| MS.gene055579 | MS.gene44251 | 0.833409 | 5.42E-56 | -1.69E-46 |
| MS.gene055957 | MS.gene44251 | 0.87933 | 1.36E-69 | -1.69E-46 |
| MS.gene056041 | MS.gene44251 | 0.916532 | 1.59E-85 | -1.69E-46 |
| MS.gene056042 | MS.gene44251 | 0.847545 | 1.08E-59 | -1.69E-46 |
| MS.gene05640 | MS.gene44251 | 0.886149 | 4.40E-72 | -1.69E-46 |
| MS.gene056526 | MS.gene44251 | 0.859077 | 5.31E-63 | -1.69E-46 |
| MS.gene056528 | MS.gene44251 | 0.850441 | 1.69E-60 | -1.69E-46 |
| MS.gene05652 | MS.gene44251 | 0.839766 | 1.30E-57 | -1.69E-46 |
| MS.gene057367 | MS.gene44251 | 0.812028 | 5.21E-51 | -1.69E-46 |
| MS.gene057458 | MS.gene44251 | 0.881649 | 2.01E-70 | -1.69E-46 |
| MS.gene058128 | MS.gene44251 | 0.855858 | 4.76E-62 | -1.69E-46 |
| MS.gene058196 | MS.gene44251 | 0.801633 | 8.21E-49 | -1.69E-46 |
| MS.gene058818 | MS.gene44251 | 0.822224 | 2.66E-53 | -1.69E-46 |
| MS.gene058827 | MS.gene44251 | 0.821811 | 3.31E-53 | -1.69E-46 |
| MS.gene058828 | MS.gene44251 | 0.800631 | 1.32E-48 | -1.69E-46 |
| MS.gene058844 | MS.gene44251 | 0.817295 | 3.55E-52 | -1.69E-46 |
| MS.gene058849 | MS.gene44251 | 0.840732 | 7.28E-58 | -1.69E-46 |
| MS.gene058853 | MS.gene44251 | 0.879048 | 1.71E-69 | -1.69E-46 |
| MS.gene05926 | MS.gene44251 | 0.802876 | 4.56E-49 | -1.69E-46 |
| MS.gene059553 | MS.gene44251 | 0.857522 | 1.54E-62 | -1.69E-46 |
| MS.gene059616 | MS.gene44251 | 0.840427 | 8.75E-58 | -1.69E-46 |
| MS.gene060473 | MS.gene44251 | 0.895195 | 1.21E-75 | -1.69E-46 |
| MS.gene060565 | MS.gene44251 | 0.895339 | 1.05E-75 | -1.69E-46 |
| MS.gene06057 | MS.gene44251 | 0.820379 | 7.08E-53 | -1.69E-46 |
| MS.gene06093 | MS.gene44251 | 0.890401 | 1.02E-73 | -1.69E-46 |
| MS.gene061099 | MS.gene44251 | 0.894967 | 1.50E-75 | -1.69E-46 |
| MS.gene061260 | MS.gene44251 | 0.891221 | 4.84E-74 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene44251.t1 | MTR_8g075950 | 84.795 | 342 | 5 | 1 | 1 | 295 | 1 | 342 | 0.0 | 538 |
| MS.gene44251.t1 | MTR_5g022010 | 46.377 | 345 | 71 | 15 | 1 | 292 | 1 | 284 | 2.16e-69 | 217 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene44251.t1 | AT5G66230 | 43.143 | 350 | 118 | 12 | 1 | 290 | 1 | 329 | 4.36e-73 | 228 |
| MS.gene44251.t1 | AT5G66230 | 42.571 | 350 | 120 | 12 | 1 | 290 | 217 | 545 | 6.14e-69 | 223 |
| MS.gene44251.t1 | AT3G51230 | 47.291 | 203 | 94 | 7 | 1 | 202 | 1 | 191 | 3.47e-45 | 152 |
Find 73 sgRNAs with CRISPR-Local
Find 106 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGGATTTGAGGGGTGTTTGC+AGG | 0.236776 | 8.1:+31468779 | None:intergenic |
| AAACGAATATGCTTTCCTTT+TGG | 0.268585 | 8.1:+31468000 | None:intergenic |
| GAGGGGTGTTTGCAGGAGTT+GGG | 0.290208 | 8.1:+31468786 | None:intergenic |
| TGAGGGGTGTTTGCAGGAGT+TGG | 0.326042 | 8.1:+31468785 | None:intergenic |
| CTTCTTCAACTTTCTGCAAA+AGG | 0.331507 | 8.1:+31468885 | None:intergenic |
| TGTGAACATTGGGGATTTGA+GGG | 0.376309 | 8.1:+31468768 | None:intergenic |
| AATGTGGTTCCAAAGTTTGC+TGG | 0.401675 | 8.1:-31468135 | MS.gene44251:CDS |
| GTATGTTTCCCAGCAAACTT+TGG | 0.422670 | 8.1:+31468126 | None:intergenic |
| AAAGGGACAAGCACAACAAC+AGG | 0.423276 | 8.1:-31469068 | MS.gene44251:CDS |
| GTGAAGAAGACTCCAGGTTC+CGG | 0.425217 | 8.1:-31468938 | MS.gene44251:CDS |
| TTCGAAATCAAGACAAAGAA+AGG | 0.427601 | 8.1:-31469086 | MS.gene44251:CDS |
| TTCCGGTGAGGCTTTGTTGA+GGG | 0.429244 | 8.1:-31468921 | MS.gene44251:CDS |
| GCCAACGATGGGAGAATCAT+TGG | 0.432716 | 8.1:+31469021 | None:intergenic |
| AAGAATTACTCACTTGAAGA+TGG | 0.434934 | 8.1:+31469356 | None:intergenic |
| TTGTGAACATTGGGGATTTG+AGG | 0.435272 | 8.1:+31468767 | None:intergenic |
| TTCAGGGAAGATCGAAGATT+CGG | 0.443167 | 8.1:-31469119 | MS.gene44251:intron |
| AACAAAGCCTCACCGGAACC+TGG | 0.449282 | 8.1:+31468926 | None:intergenic |
| TTCTTCAACTTTCTGCAAAA+GGG | 0.455347 | 8.1:+31468886 | None:intergenic |
| AGGGGTGTTTGCAGGAGTTG+GGG | 0.457618 | 8.1:+31468787 | None:intergenic |
| GTGGCAGTGTTGTGAACATT+GGG | 0.470455 | 8.1:+31468758 | None:intergenic |
| AATGTTCACAACACTGCCAC+TGG | 0.475348 | 8.1:-31468755 | MS.gene44251:CDS |
| GTCGAGTATTGCGAAGCAAA+GGG | 0.479477 | 8.1:-31468969 | MS.gene44251:CDS |
| TCAAGAACAACTCATTCCTC+AGG | 0.485642 | 8.1:-31468702 | MS.gene44251:intron |
| GAGTTAACAAATTGAAGAAA+AGG | 0.490460 | 8.1:+31468827 | None:intergenic |
| TTGCGAAGCAAAGGGGAAGC+CGG | 0.490483 | 8.1:-31468961 | MS.gene44251:CDS |
| AAGGGGTTGCCAACTCCAAA+AGG | 0.491437 | 8.1:-31468015 | MS.gene44251:CDS |
| CCCATCGTTGGCCTTGCGAA+TGG | 0.492124 | 8.1:-31469010 | MS.gene44251:CDS |
| TGTTCTTGAACAACAGAAGA+AGG | 0.497351 | 8.1:+31468716 | None:intergenic |
| TGAAGATGAGATTGTGGAAG+AGG | 0.502605 | 8.1:-31468082 | MS.gene44251:CDS |
| ACTCTTCTTGCGGTGGATGA+AGG | 0.505990 | 8.1:+31469428 | None:intergenic |
| TGCGAAGCAAAGGGGAAGCC+GGG | 0.508660 | 8.1:-31468960 | MS.gene44251:CDS |
| ACCCCTCAACAAAGCCTCAC+CGG | 0.509993 | 8.1:+31468919 | None:intergenic |
| TCCGGTGAGGCTTTGTTGAG+GGG | 0.514281 | 8.1:-31468920 | MS.gene44251:CDS |
| ATGTGGTTCCAAAGTTTGCT+GGG | 0.519914 | 8.1:-31468134 | MS.gene44251:CDS |
| GTTGGGGCAAGAAGTTGCAT+TGG | 0.524680 | 8.1:+31468803 | None:intergenic |
| GTGAACATTGGGGATTTGAG+GGG | 0.528548 | 8.1:+31468769 | None:intergenic |
| GCCATTCGCAAGGCCAACGA+TGG | 0.543905 | 8.1:+31469009 | None:intergenic |
| GTTACAGAAGACTCTAAGAT+GGG | 0.553091 | 8.1:-31468372 | MS.gene44251:CDS |
| TCCAATGATTCTCCCATCGT+TGG | 0.556712 | 8.1:-31469022 | MS.gene44251:CDS |
| GGTTACAGAAGACTCTAAGA+TGG | 0.557417 | 8.1:-31468373 | MS.gene44251:CDS |
| AGCCGGGTGAAGAAGACTCC+AGG | 0.558034 | 8.1:-31468944 | MS.gene44251:CDS |
| TGTCGAGTATTGCGAAGCAA+AGG | 0.560390 | 8.1:-31468970 | MS.gene44251:CDS |
| GTTCCGGTGAGGCTTTGTTG+AGG | 0.560999 | 8.1:-31468922 | MS.gene44251:CDS |
| AGCAACATAGGTGTGAATGA+AGG | 0.563852 | 8.1:-31468159 | MS.gene44251:CDS |
| TCTTGTGACTCTTCTTGCGG+TGG | 0.565083 | 8.1:+31469421 | None:intergenic |
| AGAATTACTCACTTGAAGAT+GGG | 0.571889 | 8.1:+31469357 | None:intergenic |
| TCTCGATCTCGCCATTCGCA+AGG | 0.575081 | 8.1:+31468999 | None:intergenic |
| TGATCTTGTGACTCTTCTTG+CGG | 0.576495 | 8.1:+31469418 | None:intergenic |
| AGATTTCTCTGACAAATCTG+AGG | 0.585613 | 8.1:-31468394 | MS.gene44251:CDS |
| TTACTTGATGAACTGTGTGA+GGG | 0.586074 | 8.1:-31468186 | MS.gene44251:CDS |
| TCGAAATCAAGACAAAGAAA+GGG | 0.587811 | 8.1:-31469085 | MS.gene44251:CDS |
| CCATTCGCAAGGCCAACGAT+GGG | 0.588894 | 8.1:+31469010 | None:intergenic |
| TGAGATTTCTAAACTGACAA+TGG | 0.589958 | 8.1:-31468858 | MS.gene44251:CDS |
| AACCTGGAGTCTTCTTCACC+CGG | 0.596279 | 8.1:+31468942 | None:intergenic |
| ATGGGGTCCACAGAAGATGA+TGG | 0.602409 | 8.1:-31468354 | MS.gene44251:intron |
| AGTGGCAGTGTTGTGAACAT+TGG | 0.604135 | 8.1:+31468757 | None:intergenic |
| GTTACTTGATGAACTGTGTG+AGG | 0.604205 | 8.1:-31468187 | MS.gene44251:CDS |
| GGAATCACCATCATCTTCTG+TGG | 0.604946 | 8.1:+31468347 | None:intergenic |
| AGATGGGATGTTGTTGACGC+TGG | 0.605894 | 8.1:+31469373 | None:intergenic |
| TAGTGATGAAGATGAGATTG+TGG | 0.608219 | 8.1:-31468088 | MS.gene44251:CDS |
| GACAAGCACAACAACAGGAT+CGG | 0.611365 | 8.1:-31469063 | MS.gene44251:CDS |
| GTTGACGCTGGAAGCAGTCA+AGG | 0.616386 | 8.1:+31469385 | None:intergenic |
| TGTGAGGGTTTGAGCAACAT+AGG | 0.619396 | 8.1:-31468171 | MS.gene44251:CDS |
| AACAGAAGAAGGTGAAAACT+CGG | 0.623438 | 8.1:+31468727 | None:intergenic |
| TCAGAGAAATCTAACAGCAG+TGG | 0.624435 | 8.1:+31468405 | None:intergenic |
| TGAAAACTCGGTGAAACCAG+TGG | 0.662057 | 8.1:+31468739 | None:intergenic |
| AGGTGTGAATGAAGGAAATG+TGG | 0.670580 | 8.1:-31468151 | MS.gene44251:CDS |
| TGCTTCGCAATACTCGACAG+AGG | 0.689458 | 8.1:+31468974 | None:intergenic |
| TCGAGTATTGCGAAGCAAAG+GGG | 0.696553 | 8.1:-31468968 | MS.gene44251:CDS |
| TTACAGAAGACTCTAAGATG+GGG | 0.707522 | 8.1:-31468371 | MS.gene44251:CDS |
| GAAGACTCCAGGTTCCGGTG+AGG | 0.720344 | 8.1:-31468933 | MS.gene44251:CDS |
| TGGCAGTGTTGTGAACATTG+GGG | 0.729813 | 8.1:+31468759 | None:intergenic |
| GACGCTGGAAGCAGTCAAGG+TGG | 0.753849 | 8.1:+31469388 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAAAATTCAATTTTTGAAAA+TGG | - | chr8.1:31468170-31468189 | MS.gene44251:CDS | 10.0% |
| !!! | AAAATTCAATTTTTGAAAAT+GGG | - | chr8.1:31468171-31468190 | MS.gene44251:CDS | 10.0% |
| !!! | AATATTTTCTTGAAAAACTA+AGG | + | chr8.1:31468904-31468923 | None:intergenic | 15.0% |
| !!! | TAGTTTGTTAAACATGTATT+TGG | - | chr8.1:31468877-31468896 | MS.gene44251:CDS | 20.0% |
| ! | ATGCACTTTCTTGAAAAATA+AGG | + | chr8.1:31468832-31468851 | None:intergenic | 25.0% |
| ! | GAGTTAACAAATTGAAGAAA+AGG | + | chr8.1:31468582-31468601 | None:intergenic | 25.0% |
| !! | CTTTATCAAAGATTCGATTT+TGG | - | chr8.1:31468224-31468243 | MS.gene44251:intron | 25.0% |
| !!! | AAAAATTCGATTTTTCGAAC+TGG | - | chr8.1:31468077-31468096 | MS.gene44251:CDS | 25.0% |
| !!! | AAAATTCGATTTTTCGAACT+GGG | - | chr8.1:31468078-31468097 | MS.gene44251:CDS | 25.0% |
| !!! | AAAGATTCGATTTTGGAAAA+TGG | - | chr8.1:31468231-31468250 | MS.gene44251:intron | 25.0% |
| !!! | AAGAAAGTGCATGTTTTTTT+TGG | - | chr8.1:31468840-31468859 | MS.gene44251:CDS | 25.0% |
| !!! | AAGATTCGATTTTGGAAAAT+GGG | - | chr8.1:31468232-31468251 | MS.gene44251:intron | 25.0% |
| !!! | TTGATCATTTTCAAGTTTGA+TGG | - | chr8.1:31468103-31468122 | MS.gene44251:CDS | 25.0% |
| !!! | TTGATTTGATTTTTGATGTC+AGG | - | chr8.1:31468934-31468953 | MS.gene44251:CDS | 25.0% |
| AAGAATTACTCACTTGAAGA+TGG | + | chr8.1:31468053-31468072 | None:intergenic | 30.0% | |
| AGAATTACTCACTTGAAGAT+GGG | + | chr8.1:31468052-31468071 | None:intergenic | 30.0% | |
| TCGAAATCAAGACAAAGAAA+GGG | - | chr8.1:31468321-31468340 | MS.gene44251:intron | 30.0% | |
| TGAGATTTCTAAACTGACAA+TGG | - | chr8.1:31468548-31468567 | MS.gene44251:intron | 30.0% | |
| TTCGAAATCAAGACAAAGAA+AGG | - | chr8.1:31468320-31468339 | MS.gene44251:intron | 30.0% | |
| TTCTTCAACTTTCTGCAAAA+GGG | + | chr8.1:31468523-31468542 | None:intergenic | 30.0% | |
| ! | AAACGAATATGCTTTCCTTT+TGG | + | chr8.1:31469409-31469428 | None:intergenic | 30.0% |
| ! | CTCATGATTTTCTTGATTCA+GGG | - | chr8.1:31468271-31468290 | MS.gene44251:intron | 30.0% |
| ! | TCTCATGATTTTCTTGATTC+AGG | - | chr8.1:31468270-31468289 | MS.gene44251:intron | 30.0% |
| !! | AAAGCATATTCGTTTTTCTG+AGG | - | chr8.1:31469414-31469433 | MS.gene44251:CDS | 30.0% |
| !! | ATTGACTTGAATTGACCAAA+TGG | + | chr8.1:31469083-31469102 | None:intergenic | 30.0% |
| !! | TCTGAGATTTTGCATTTGAA+GGG | - | chr8.1:31469373-31469392 | MS.gene44251:CDS | 30.0% |
| AACAGAAGAAGGTGAAAACT+CGG | + | chr8.1:31468682-31468701 | None:intergenic | 35.0% | |
| AGATTTCTCTGACAAATCTG+AGG | - | chr8.1:31469012-31469031 | MS.gene44251:CDS | 35.0% | |
| CTTCTTCAACTTTCTGCAAA+AGG | + | chr8.1:31468524-31468543 | None:intergenic | 35.0% | |
| TAGTGATGAAGATGAGATTG+TGG | - | chr8.1:31469318-31469337 | MS.gene44251:intron | 35.0% | |
| TGTTCTTGAACAACAGAAGA+AGG | + | chr8.1:31468693-31468712 | None:intergenic | 35.0% | |
| TTACTTGATGAACTGTGTGA+GGG | - | chr8.1:31469220-31469239 | MS.gene44251:intron | 35.0% | |
| ! | AAGATGATGGTGATTCCATT+TGG | - | chr8.1:31469065-31469084 | MS.gene44251:CDS | 35.0% |
| ! | CTGAGATTTTGCATTTGAAG+GGG | - | chr8.1:31469374-31469393 | MS.gene44251:CDS | 35.0% |
| ! | TGATGATGATGAAGATGATG+AGG | - | chr8.1:31469114-31469133 | MS.gene44251:CDS | 35.0% |
| !! | GTTACAGAAGACTCTAAGAT+GGG | - | chr8.1:31469034-31469053 | MS.gene44251:CDS | 35.0% |
| !! | TTACAGAAGACTCTAAGATG+GGG | - | chr8.1:31469035-31469054 | MS.gene44251:CDS | 35.0% |
| !!! | ATATGCTTTCCTTTTGGAGT+TGG | + | chr8.1:31469403-31469422 | None:intergenic | 35.0% |
| !!! | CTCTGAGATTTTGCATTTGA+AGG | - | chr8.1:31469372-31469391 | MS.gene44251:CDS | 35.0% |
| AATGTGGTTCCAAAGTTTGC+TGG | - | chr8.1:31469271-31469290 | MS.gene44251:intron | 40.0% | |
| AGATGATGAGGAAATAGCTG+AGG | - | chr8.1:31469126-31469145 | MS.gene44251:intron | 40.0% | |
| AGCAACATAGGTGTGAATGA+AGG | - | chr8.1:31469247-31469266 | MS.gene44251:intron | 40.0% | |
| AGGTGTGAATGAAGGAAATG+TGG | - | chr8.1:31469255-31469274 | MS.gene44251:intron | 40.0% | |
| GAGGAGGATGATTACTATGA+GGG | - | chr8.1:31469160-31469179 | MS.gene44251:intron | 40.0% | |
| GTATGTTTCCCAGCAAACTT+TGG | + | chr8.1:31469283-31469302 | None:intergenic | 40.0% | |
| GTTACTTGATGAACTGTGTG+AGG | - | chr8.1:31469219-31469238 | MS.gene44251:intron | 40.0% | |
| TCAAGAACAACTCATTCCTC+AGG | - | chr8.1:31468704-31468723 | MS.gene44251:CDS | 40.0% | |
| TCAGAGAAATCTAACAGCAG+TGG | + | chr8.1:31469004-31469023 | None:intergenic | 40.0% | |
| TGAAGATGAGATTGTGGAAG+AGG | - | chr8.1:31469324-31469343 | MS.gene44251:intron | 40.0% | |
| TGAGGAGGATGATTACTATG+AGG | - | chr8.1:31469159-31469178 | MS.gene44251:intron | 40.0% | |
| TGATCTTGTGACTCTTCTTG+CGG | + | chr8.1:31467991-31468010 | None:intergenic | 40.0% | |
| TGTGAACATTGGGGATTTGA+GGG | + | chr8.1:31468641-31468660 | None:intergenic | 40.0% | |
| TTCAGGGAAGATCGAAGATT+CGG | - | chr8.1:31468287-31468306 | MS.gene44251:intron | 40.0% | |
| TTGTGAACATTGGGGATTTG+AGG | + | chr8.1:31468642-31468661 | None:intergenic | 40.0% | |
| ! | AAGAAGAGTATGCTGATGGA+GGG | - | chr8.1:31469194-31469213 | MS.gene44251:intron | 40.0% |
| ! | ATGTGGTTCCAAAGTTTGCT+GGG | - | chr8.1:31469272-31469291 | MS.gene44251:intron | 40.0% |
| ! | GAAGAAGAAGAGTATGCTGA+TGG | - | chr8.1:31469190-31469209 | MS.gene44251:intron | 40.0% |
| ! | GGTTACAGAAGACTCTAAGA+TGG | - | chr8.1:31469033-31469052 | MS.gene44251:CDS | 40.0% |
| !! | GCATATTCGTTTTTCTGAGG+AGG | - | chr8.1:31469417-31469436 | MS.gene44251:CDS | 40.0% |
| AAAGGGACAAGCACAACAAC+AGG | - | chr8.1:31468338-31468357 | MS.gene44251:intron | 45.0% | |
| AATGTTCACAACACTGCCAC+TGG | - | chr8.1:31468651-31468670 | MS.gene44251:intron | 45.0% | |
| ACAAGACTGTGACAAACCTG+AGG | + | chr8.1:31468723-31468742 | None:intergenic | 45.0% | |
| AGCTGAGGTAGAAGAAGATG+AGG | - | chr8.1:31469141-31469160 | MS.gene44251:intron | 45.0% | |
| AGTGGCAGTGTTGTGAACAT+TGG | + | chr8.1:31468652-31468671 | None:intergenic | 45.0% | |
| GACAAGCACAACAACAGGAT+CGG | - | chr8.1:31468343-31468362 | MS.gene44251:intron | 45.0% | |
| GGAATCACCATCATCTTCTG+TGG | + | chr8.1:31469062-31469081 | None:intergenic | 45.0% | |
| GTGAACATTGGGGATTTGAG+GGG | + | chr8.1:31468640-31468659 | None:intergenic | 45.0% | |
| GTGGCAGTGTTGTGAACATT+GGG | + | chr8.1:31468651-31468670 | None:intergenic | 45.0% | |
| TCCAATGATTCTCCCATCGT+TGG | - | chr8.1:31468384-31468403 | MS.gene44251:CDS | 45.0% | |
| TGAGGTAGAAGAAGATGAGG+AGG | - | chr8.1:31469144-31469163 | MS.gene44251:intron | 45.0% | |
| TGGCAGTGTTGTGAACATTG+GGG | + | chr8.1:31468650-31468669 | None:intergenic | 45.0% | |
| TGTGAGGGTTTGAGCAACAT+AGG | - | chr8.1:31469235-31469254 | MS.gene44251:intron | 45.0% | |
| ! | GAAGAAGAGTATGCTGATGG+AGG | - | chr8.1:31469193-31469212 | MS.gene44251:intron | 45.0% |
| ! | GTCGAGTATTGCGAAGCAAA+GGG | - | chr8.1:31468437-31468456 | MS.gene44251:CDS | 45.0% |
| ! | TCGAGTATTGCGAAGCAAAG+GGG | - | chr8.1:31468438-31468457 | MS.gene44251:CDS | 45.0% |
| ! | TGAAAACTCGGTGAAACCAG+TGG | + | chr8.1:31468670-31468689 | None:intergenic | 45.0% |
| ! | TGTCGAGTATTGCGAAGCAA+AGG | - | chr8.1:31468436-31468455 | MS.gene44251:CDS | 45.0% |
| AACCTGGAGTCTTCTTCACC+CGG | + | chr8.1:31468467-31468486 | None:intergenic | 50.0% | |
| AAGGGGTTGCCAACTCCAAA+AGG | - | chr8.1:31469391-31469410 | MS.gene44251:CDS | 50.0% | |
| ACTCTTCTTGCGGTGGATGA+AGG | + | chr8.1:31467981-31468000 | None:intergenic | 50.0% | |
| AGATGGGATGTTGTTGACGC+TGG | + | chr8.1:31468036-31468055 | None:intergenic | 50.0% | |
| ATGGGGTCCACAGAAGATGA+TGG | - | chr8.1:31469052-31469071 | MS.gene44251:CDS | 50.0% | |
| GCCAACGATGGGAGAATCAT+TGG | + | chr8.1:31468388-31468407 | None:intergenic | 50.0% | |
| GTGAAGAAGACTCCAGGTTC+CGG | - | chr8.1:31468468-31468487 | MS.gene44251:intron | 50.0% | |
| GTTGGGGCAAGAAGTTGCAT+TGG | + | chr8.1:31468606-31468625 | None:intergenic | 50.0% | |
| TCTTGTGACTCTTCTTGCGG+TGG | + | chr8.1:31467988-31468007 | None:intergenic | 50.0% | |
| TGCTTCGCAATACTCGACAG+AGG | + | chr8.1:31468435-31468454 | None:intergenic | 50.0% | |
| !! | TTCCGGTGAGGCTTTGTTGA+GGG | - | chr8.1:31468485-31468504 | MS.gene44251:intron | 50.0% |
| AACAAAGCCTCACCGGAACC+TGG | + | chr8.1:31468483-31468502 | None:intergenic | 55.0% | |
| ACCCCTCAACAAAGCCTCAC+CGG | + | chr8.1:31468490-31468509 | None:intergenic | 55.0% | |
| CCATTCGCAAGGCCAACGAT+GGG | + | chr8.1:31468399-31468418 | None:intergenic | 55.0% | |
| GTTGACGCTGGAAGCAGTCA+AGG | + | chr8.1:31468024-31468043 | None:intergenic | 55.0% | |
| TCTCGATCTCGCCATTCGCA+AGG | + | chr8.1:31468410-31468429 | None:intergenic | 55.0% | |
| TTGCGAAGCAAAGGGGAAGC+CGG | - | chr8.1:31468445-31468464 | MS.gene44251:CDS | 55.0% | |
| !! | AGGGGTGTTTGCAGGAGTTG+GGG | + | chr8.1:31468622-31468641 | None:intergenic | 55.0% |
| !! | GAGGGGTGTTTGCAGGAGTT+GGG | + | chr8.1:31468623-31468642 | None:intergenic | 55.0% |
| !! | GGGATTTGAGGGGTGTTTGC+AGG | + | chr8.1:31468630-31468649 | None:intergenic | 55.0% |
| !! | GTTCCGGTGAGGCTTTGTTG+AGG | - | chr8.1:31468484-31468503 | MS.gene44251:intron | 55.0% |
| !! | TCCGGTGAGGCTTTGTTGAG+GGG | - | chr8.1:31468486-31468505 | MS.gene44251:intron | 55.0% |
| !! | TGAGGGGTGTTTGCAGGAGT+TGG | + | chr8.1:31468624-31468643 | None:intergenic | 55.0% |
| AGCCGGGTGAAGAAGACTCC+AGG | - | chr8.1:31468462-31468481 | MS.gene44251:intron | 60.0% | |
| GAAGACTCCAGGTTCCGGTG+AGG | - | chr8.1:31468473-31468492 | MS.gene44251:intron | 60.0% | |
| GACGCTGGAAGCAGTCAAGG+TGG | + | chr8.1:31468021-31468040 | None:intergenic | 60.0% | |
| GCCATTCGCAAGGCCAACGA+TGG | + | chr8.1:31468400-31468419 | None:intergenic | 60.0% | |
| TGCGAAGCAAAGGGGAAGCC+GGG | - | chr8.1:31468446-31468465 | MS.gene44251:CDS | 60.0% | |
| !! | CCCATCGTTGGCCTTGCGAA+TGG | - | chr8.1:31468396-31468415 | MS.gene44251:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.1 | gene | 31467969 | 31469459 | 31467969 | ID=MS.gene44251 |
| chr8.1 | mRNA | 31467969 | 31469459 | 31467969 | ID=MS.gene44251.t1;Parent=MS.gene44251 |
| chr8.1 | exon | 31469369 | 31469459 | 31469369 | ID=MS.gene44251.t1.exon1;Parent=MS.gene44251.t1 |
| chr8.1 | CDS | 31469369 | 31469459 | 31469369 | ID=cds.MS.gene44251.t1;Parent=MS.gene44251.t1 |
| chr8.1 | exon | 31468703 | 31469136 | 31468703 | ID=MS.gene44251.t1.exon2;Parent=MS.gene44251.t1 |
| chr8.1 | CDS | 31468703 | 31469136 | 31468703 | ID=cds.MS.gene44251.t1;Parent=MS.gene44251.t1 |
| chr8.1 | exon | 31468355 | 31468472 | 31468355 | ID=MS.gene44251.t1.exon3;Parent=MS.gene44251.t1 |
| chr8.1 | CDS | 31468355 | 31468472 | 31468355 | ID=cds.MS.gene44251.t1;Parent=MS.gene44251.t1 |
| chr8.1 | exon | 31467969 | 31468213 | 31467969 | ID=MS.gene44251.t1.exon4;Parent=MS.gene44251.t1 |
| chr8.1 | CDS | 31467969 | 31468213 | 31467969 | ID=cds.MS.gene44251.t1;Parent=MS.gene44251.t1 |
| Gene Sequence |
| Protein sequence |
