Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene44412.t1 | RHN82614.1 | 97.3 | 112 | 3 | 0 | 1 | 112 | 939 | 1050 | 2.50E-57 | 231.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene44412.t1 | Q9SSE9 | 75.5 | 102 | 25 | 0 | 1 | 102 | 782 | 883 | 6.3e-41 | 167.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene44412.t1 | G7IE70 | 97.3 | 112 | 3 | 0 | 1 | 112 | 939 | 1050 | 1.8e-57 | 231.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene44412.t1 | TR | Jumonji |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049159 | MS.gene44412 | 0.809525 | 1.81E-50 | -1.69E-46 |
| MS.gene049254 | MS.gene44412 | 0.829821 | 4.15E-55 | -1.69E-46 |
| MS.gene049343 | MS.gene44412 | 0.856494 | 3.10E-62 | -1.69E-46 |
| MS.gene049452 | MS.gene44412 | 0.816011 | 6.89E-52 | -1.69E-46 |
| MS.gene049825 | MS.gene44412 | 0.804826 | 1.79E-49 | -1.69E-46 |
| MS.gene049850 | MS.gene44412 | 0.831007 | 2.13E-55 | -1.69E-46 |
| MS.gene049873 | MS.gene44412 | 0.81837 | 2.03E-52 | -1.69E-46 |
| MS.gene050156 | MS.gene44412 | 0.805418 | 1.35E-49 | -1.69E-46 |
| MS.gene050355 | MS.gene44412 | 0.814898 | 1.22E-51 | -1.69E-46 |
| MS.gene050799 | MS.gene44412 | 0.828033 | 1.13E-54 | -1.69E-46 |
| MS.gene051181 | MS.gene44412 | 0.808801 | 2.59E-50 | -1.69E-46 |
| MS.gene051744 | MS.gene44412 | 0.815952 | 7.10E-52 | -1.69E-46 |
| MS.gene051957 | MS.gene44412 | 0.800732 | 1.26E-48 | -1.69E-46 |
| MS.gene052108 | MS.gene44412 | 0.813346 | 2.68E-51 | -1.69E-46 |
| MS.gene052519 | MS.gene44412 | 0.88534 | 8.85E-72 | -1.69E-46 |
| MS.gene052584 | MS.gene44412 | 0.82085 | 5.52E-53 | -1.69E-46 |
| MS.gene052773 | MS.gene44412 | 0.828926 | 6.85E-55 | -1.69E-46 |
| MS.gene052863 | MS.gene44412 | 0.829739 | 4.35E-55 | -1.69E-46 |
| MS.gene053008 | MS.gene44412 | 0.811353 | 7.31E-51 | -1.69E-46 |
| MS.gene053145 | MS.gene44412 | 0.821607 | 3.69E-53 | -1.69E-46 |
| MS.gene053226 | MS.gene44412 | 0.835424 | 1.69E-56 | -1.69E-46 |
| MS.gene053900 | MS.gene44412 | 0.802639 | 5.10E-49 | -1.69E-46 |
| MS.gene053995 | MS.gene44412 | 0.80264 | 5.10E-49 | -1.69E-46 |
| MS.gene05415 | MS.gene44412 | 0.810375 | 1.19E-50 | -1.69E-46 |
| MS.gene054236 | MS.gene44412 | 0.811161 | 8.04E-51 | -1.69E-46 |
| MS.gene05423 | MS.gene44412 | 0.820504 | 6.62E-53 | -1.69E-46 |
| MS.gene05458 | MS.gene44412 | 0.805958 | 1.04E-49 | -1.69E-46 |
| MS.gene054651 | MS.gene44412 | 0.858339 | 8.81E-63 | -1.69E-46 |
| MS.gene054775 | MS.gene44412 | 0.819073 | 1.41E-52 | -1.69E-46 |
| MS.gene055166 | MS.gene44412 | 0.803344 | 3.65E-49 | -1.69E-46 |
| MS.gene055228 | MS.gene44412 | 0.805849 | 1.09E-49 | -1.69E-46 |
| MS.gene055586 | MS.gene44412 | 0.806819 | 6.83E-50 | -1.69E-46 |
| MS.gene055589 | MS.gene44412 | 0.84609 | 2.70E-59 | -1.69E-46 |
| MS.gene055818 | MS.gene44412 | 0.84902 | 4.23E-60 | -1.69E-46 |
| MS.gene055841 | MS.gene44412 | 0.818641 | 1.76E-52 | -1.69E-46 |
| MS.gene056215 | MS.gene44412 | 0.823245 | 1.54E-53 | -1.69E-46 |
| MS.gene056366 | MS.gene44412 | 0.84291 | 1.94E-58 | -1.69E-46 |
| MS.gene056595 | MS.gene44412 | 0.820105 | 8.18E-53 | -1.69E-46 |
| MS.gene05690 | MS.gene44412 | 0.831902 | 1.28E-55 | -1.69E-46 |
| MS.gene057026 | MS.gene44412 | 0.801689 | 8.00E-49 | -1.69E-46 |
| MS.gene057208 | MS.gene44412 | 0.853913 | 1.74E-61 | -1.69E-46 |
| MS.gene057598 | MS.gene44412 | 0.804158 | 2.47E-49 | -1.69E-46 |
| MS.gene058008 | MS.gene44412 | 0.814043 | 1.88E-51 | -1.69E-46 |
| MS.gene058009 | MS.gene44412 | 0.827691 | 1.36E-54 | -1.69E-46 |
| MS.gene058037 | MS.gene44412 | 0.837286 | 5.69E-57 | -1.69E-46 |
| MS.gene058625 | MS.gene44412 | 0.833684 | 4.63E-56 | -1.69E-46 |
| MS.gene058781 | MS.gene44412 | 0.816327 | 5.86E-52 | -1.69E-46 |
| MS.gene058783 | MS.gene44412 | 0.851968 | 6.28E-61 | -1.69E-46 |
| MS.gene058979 | MS.gene44412 | 0.811394 | 7.16E-51 | -1.69E-46 |
| MS.gene05954 | MS.gene44412 | 0.80269 | 4.98E-49 | -1.69E-46 |
| MS.gene059625 | MS.gene44412 | 0.805547 | 1.27E-49 | -1.69E-46 |
| MS.gene059842 | MS.gene44412 | 0.832768 | 7.83E-56 | -1.69E-46 |
| MS.gene060352 | MS.gene44412 | 0.801187 | 1.01E-48 | -1.69E-46 |
| MS.gene060572 | MS.gene44412 | 0.822839 | 1.91E-53 | -1.69E-46 |
| MS.gene060935 | MS.gene44412 | 0.833766 | 4.42E-56 | -1.69E-46 |
| MS.gene060937 | MS.gene44412 | 0.814662 | 1.37E-51 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene44412.t1 | MTR_1g114150 | 97.321 | 112 | 3 | 0 | 1 | 112 | 939 | 1050 | 2.23e-72 | 232 |
| MS.gene44412.t1 | MTR_1g069565 | 91.964 | 112 | 9 | 0 | 1 | 112 | 770 | 881 | 1.08e-68 | 221 |
| MS.gene44412.t1 | MTR_1g069565 | 91.964 | 112 | 9 | 0 | 1 | 112 | 827 | 938 | 1.57e-68 | 221 |
| MS.gene44412.t1 | MTR_5g065200 | 89.286 | 112 | 12 | 0 | 1 | 112 | 723 | 834 | 1.81e-66 | 214 |
| MS.gene44412.t1 | MTR_1g114130 | 87.500 | 112 | 14 | 0 | 1 | 112 | 927 | 1038 | 1.33e-64 | 211 |
| MS.gene44412.t1 | MTR_5g047620 | 88.393 | 112 | 13 | 0 | 1 | 112 | 686 | 797 | 1.44e-64 | 209 |
| MS.gene44412.t1 | MTR_1g114070 | 80.357 | 112 | 22 | 0 | 1 | 112 | 813 | 924 | 2.16e-58 | 193 |
| MS.gene44412.t1 | MTR_4g132540 | 75.455 | 110 | 27 | 0 | 1 | 110 | 755 | 864 | 9.45e-55 | 182 |
| MS.gene44412.t1 | MTR_2g024270 | 74.545 | 110 | 28 | 0 | 1 | 110 | 708 | 817 | 1.27e-50 | 171 |
| MS.gene44412.t1 | MTR_0020s0100 | 81.250 | 96 | 18 | 0 | 1 | 96 | 597 | 692 | 2.45e-50 | 169 |
| MS.gene44412.t1 | MTR_1g008060 | 77.228 | 101 | 23 | 0 | 1 | 101 | 1586 | 1686 | 5.23e-50 | 169 |
| MS.gene44412.t1 | MTR_1g008060 | 77.228 | 101 | 23 | 0 | 1 | 101 | 1577 | 1677 | 5.39e-50 | 169 |
| MS.gene44412.t1 | MTR_2g024140 | 71.818 | 110 | 31 | 0 | 1 | 110 | 576 | 685 | 7.11e-49 | 165 |
| MS.gene44412.t1 | MTR_7g117445 | 68.468 | 111 | 35 | 0 | 1 | 111 | 815 | 925 | 3.17e-48 | 164 |
| MS.gene44412.t1 | MTR_7g117445 | 68.468 | 111 | 35 | 0 | 1 | 111 | 815 | 925 | 3.37e-48 | 164 |
| MS.gene44412.t1 | MTR_7g117445 | 68.468 | 111 | 35 | 0 | 1 | 111 | 815 | 925 | 3.55e-48 | 164 |
| MS.gene44412.t1 | MTR_4g091520 | 53.153 | 111 | 52 | 0 | 1 | 111 | 1167 | 1277 | 7.09e-38 | 135 |
| MS.gene44412.t1 | MTR_2g024240 | 77.333 | 75 | 17 | 0 | 1 | 75 | 314 | 388 | 5.05e-37 | 129 |
| MS.gene44412.t1 | MTR_2g011630 | 51.351 | 111 | 54 | 0 | 1 | 111 | 633 | 743 | 1.25e-35 | 128 |
| MS.gene44412.t1 | MTR_2g011630 | 51.351 | 111 | 54 | 0 | 1 | 111 | 601 | 711 | 1.40e-35 | 128 |
| MS.gene44412.t1 | MTR_2g011630 | 51.351 | 111 | 54 | 0 | 1 | 111 | 845 | 955 | 1.71e-35 | 128 |
| MS.gene44412.t1 | MTR_1g083120 | 46.847 | 111 | 59 | 0 | 1 | 111 | 782 | 892 | 4.49e-33 | 121 |
| MS.gene44412.t1 | MTR_1g083120 | 46.847 | 111 | 59 | 0 | 1 | 111 | 799 | 909 | 4.96e-33 | 121 |
| MS.gene44412.t1 | MTR_8g465720 | 81.132 | 53 | 9 | 1 | 1 | 53 | 88 | 139 | 1.12e-25 | 94.7 |
| MS.gene44412.t1 | MTR_7g117445 | 70.588 | 51 | 15 | 0 | 1 | 51 | 815 | 865 | 1.05e-20 | 85.9 |
| MS.gene44412.t1 | MTR_1g083120 | 52.830 | 53 | 25 | 0 | 1 | 53 | 782 | 834 | 3.61e-16 | 73.2 |
| MS.gene44412.t1 | MTR_1g083120 | 52.830 | 53 | 25 | 0 | 1 | 53 | 782 | 834 | 3.76e-16 | 73.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene44412.t1 | AT1G11950 | 72.727 | 110 | 30 | 0 | 1 | 110 | 759 | 868 | 4.94e-55 | 183 |
| MS.gene44412.t1 | AT1G11950 | 72.727 | 110 | 30 | 0 | 1 | 110 | 759 | 868 | 4.94e-55 | 183 |
| MS.gene44412.t1 | AT1G62310 | 80.851 | 94 | 18 | 0 | 1 | 94 | 785 | 878 | 5.38e-50 | 169 |
| MS.gene44412.t1 | AT3G07610 | 75.490 | 102 | 25 | 0 | 1 | 102 | 782 | 883 | 4.16e-49 | 167 |
| MS.gene44412.t1 | AT3G07610 | 75.490 | 102 | 25 | 0 | 1 | 102 | 804 | 905 | 4.95e-49 | 167 |
| MS.gene44412.t1 | AT4G00990 | 63.636 | 110 | 40 | 0 | 1 | 110 | 720 | 829 | 3.04e-45 | 155 |
| MS.gene44412.t1 | AT4G21430 | 45.946 | 111 | 60 | 0 | 1 | 111 | 803 | 913 | 7.45e-30 | 112 |
| MS.gene44412.t1 | AT1G09060 | 45.946 | 111 | 59 | 1 | 1 | 111 | 796 | 905 | 3.88e-29 | 110 |
| MS.gene44412.t1 | AT1G09060 | 45.946 | 111 | 59 | 1 | 1 | 111 | 796 | 905 | 3.88e-29 | 110 |
| MS.gene44412.t1 | AT1G09060 | 45.946 | 111 | 59 | 1 | 1 | 111 | 782 | 891 | 4.23e-29 | 110 |
| MS.gene44412.t1 | AT1G09060 | 45.946 | 111 | 59 | 1 | 1 | 111 | 782 | 891 | 4.23e-29 | 110 |
| MS.gene44412.t1 | AT4G00990 | 64.407 | 59 | 21 | 0 | 1 | 59 | 720 | 778 | 1.36e-21 | 88.6 |
| MS.gene44412.t1 | AT4G00990 | 72.549 | 51 | 14 | 0 | 1 | 51 | 720 | 770 | 8.26e-21 | 86.3 |
| MS.gene44412.t1 | AT1G11950 | 76.744 | 43 | 10 | 0 | 1 | 43 | 759 | 801 | 9.49e-19 | 80.5 |
Find 0 sgRNAs with CRISPR-Local
Find 137 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAATTGTTTTAATAAGAATA+TGG | + | 10786:9856-9875 | MS.gene44412:intergenic | 10.0% |
| !!! | ATAATGTTTTTTAATGTTTT+GGG | - | 10786:9359-9378 | MS.gene44412:intron | 10.0% |
| !!! | TATAATGTTTTTTAATGTTT+TGG | - | 10786:9358-9377 | MS.gene44412:intron | 10.0% |
| !!! | TATTTTTTTTTCTAAAAAGA+AGG | - | 10786:10941-10960 | MS.gene44412:intron | 10.0% |
| !!! | TTCTTATTAAAACAATTTTA+AGG | - | 10786:9858-9877 | MS.gene44412:intron | 10.0% |
| !! | AAGTTAACTATGATTAATAA+TGG | - | 10786:9660-9679 | MS.gene44412:intron | 15.0% |
| !!! | ATATAAGAAAAGTGATTTTT+TGG | + | 10786:10812-10831 | MS.gene44412:intergenic | 15.0% |
| !!! | TGAATTTGTTTTATCTTTAA+TGG | - | 10786:9549-9568 | MS.gene44412:intron | 15.0% |
| !! | AAAACAAGTATACAACAATT+AGG | + | 10786:9721-9740 | MS.gene44412:intergenic | 20.0% |
| !! | ATGATCTTATTCTTAGTATT+TGG | - | 10786:9995-10014 | MS.gene44412:intron | 20.0% |
| !! | ATGTTAAATTGTCAACAAAA+TGG | + | 10786:9414-9433 | MS.gene44412:intergenic | 20.0% |
| !! | CAATACAAATAACAATCTAT+TGG | + | 10786:11203-11222 | MS.gene44412:intergenic | 20.0% |
| !! | TCAAAAAGATCCAAAATAAA+CGG | + | 10786:10770-10789 | MS.gene44412:intergenic | 20.0% |
| !! | TCATATCAATAGATTGTTAT+TGG | - | 10786:11269-11288 | MS.gene44412:intron | 20.0% |
| !! | TGATCTTATTCTTAGTATTT+GGG | - | 10786:9996-10015 | MS.gene44412:intron | 20.0% |
| !!! | AAATTTGGTGAATTTGAATT+AGG | + | 10786:9931-9950 | MS.gene44412:intergenic | 20.0% |
| !!! | ATTAAAACAATTTTAAGGTC+AGG | - | 10786:9863-9882 | MS.gene44412:intron | 20.0% |
| !!! | TAATTGCAGTTTTAGAATTT+GGG | - | 10786:10696-10715 | MS.gene44412:intron | 20.0% |
| ! | AAATGCATATGTTGAGTTTA+TGG | - | 10786:9599-9618 | MS.gene44412:intron | 25.0% |
| ! | AATGCATATGTTGAGTTTAT+GGG | - | 10786:9600-9619 | MS.gene44412:intron | 25.0% |
| ! | ACCAAATTTGTATTGAGATT+TGG | - | 10786:9942-9961 | MS.gene44412:intron | 25.0% |
| ! | AGGACATATTATATGTAATG+TGG | - | 10786:10083-10102 | MS.gene44412:intron | 25.0% |
| ! | ATATTATTCCGAGGTAAAAA+AGG | - | 10786:9810-9829 | MS.gene44412:intron | 25.0% |
| ! | CAAAAAGATCCAAAATAAAC+GGG | + | 10786:10769-10788 | MS.gene44412:intergenic | 25.0% |
| ! | GGACATATTATATGTAATGT+GGG | - | 10786:10084-10103 | MS.gene44412:intron | 25.0% |
| ! | TAACAATCTATTGATATGAC+AGG | + | 10786:11268-11287 | MS.gene44412:intergenic | 25.0% |
| ! | TAACCAAAGAAGCAAAAATA+AGG | + | 10786:11325-11344 | MS.gene44412:intergenic | 25.0% |
| ! | TATGTAATACCTTCAGATTT+CGG | + | 10786:9520-9539 | MS.gene44412:intergenic | 25.0% |
| ! | TCAAAATGAAAAACTATTCC+CGG | - | 10786:10902-10921 | MS.gene44412:intron | 25.0% |
| ! | TTAAAATAGACAATCCCAAA+AGG | - | 10786:10267-10286 | MS.gene44412:intron | 25.0% |
| ! | TTACGTAAAATATTATTCCG+AGG | - | 10786:9801-9820 | MS.gene44412:intron | 25.0% |
| !! | ATTTTTGCTTCTTTGGTTAA+AGG | - | 10786:11326-11345 | MS.gene44412:intron | 25.0% |
| !! | TCAAGTAAGTTATTCCTTTT+GGG | + | 10786:10284-10303 | MS.gene44412:intergenic | 25.0% |
| !! | TTCAAGTAAGTTATTCCTTT+TGG | + | 10786:10285-10304 | MS.gene44412:intergenic | 25.0% |
| !!! | ACAATTTAACATTGACTTGT+AGG | - | 10786:9422-9441 | MS.gene44412:intron | 25.0% |
| !!! | CAAATTCTAAAACTGCAATT+AGG | + | 10786:10697-10716 | MS.gene44412:intergenic | 25.0% |
| !!! | CTAATTGCAGTTTTAGAATT+TGG | - | 10786:10695-10714 | MS.gene44412:intron | 25.0% |
| !!! | TATGGGTTTTAGATAAAAGA+TGG | - | 10786:9617-9636 | MS.gene44412:intron | 25.0% |
| AAAGAAGCTAATGACGAAAT+AGG | + | 10786:10654-10673 | MS.gene44411:intergenic | 30.0% | |
| AACTCAACATATGCATTTCT+TGG | + | 10786:9597-9616 | MS.gene44412:intergenic | 30.0% | |
| CAAGTATACAACAATTAGGA+CGG | + | 10786:9717-9736 | MS.gene44412:intergenic | 30.0% | |
| CAGAATCAAATCAACAAAAG+TGG | + | 10786:10593-10612 | MS.gene44412:intergenic | 30.0% | |
| CTTGATATAGCAGAACAATT+TGG | - | 10786:10719-10738 | MS.gene44412:intron | 30.0% | |
| CTTGTCCAATATTGAGATAT+TGG | - | 10786:10624-10643 | MS.gene44412:intron | 30.0% | |
| GACATCCAATATCTCAATAT+TGG | + | 10786:10632-10651 | MS.gene44412:intergenic | 30.0% | |
| GCCAAATCTCAATACAAATT+TGG | + | 10786:9946-9965 | MS.gene44412:intergenic | 30.0% | |
| TATATATGCTATGCTTGATC+TGG | - | 10786:11362-11381 | MS.gene44412:CDS | 30.0% | |
| TATCTTGAGAGAACAATGTT+TGG | - | 10786:9690-9709 | MS.gene44412:intron | 30.0% | |
| TGCAACTTATAAACATGTGT+AGG | - | 10786:10063-10082 | MS.gene44412:intron | 30.0% | |
| ! | ATAGATTTTGCAAAAGCTAC+CGG | + | 10786:10924-10943 | MS.gene44412:intergenic | 30.0% |
| ! | GGGAATAGTTTTTCATTTTG+AGG | + | 10786:10903-10922 | MS.gene44412:intergenic | 30.0% |
| !! | TCAAATAAAAGTGCTGATCA+TGG | + | 10786:9290-9309 | MS.gene44412:intergenic | 30.0% |
| !!! | CAATTTTAAGGTCAGGAAAA+TGG | - | 10786:9870-9889 | MS.gene44412:intron | 30.0% |
| !!! | CTTCCTTATTTTTGCTTCTT+TGG | - | 10786:11319-11338 | MS.gene44412:intron | 30.0% |
| AAATCAATGTTGGATGGCAA+AGG | - | 10786:10320-10339 | MS.gene44412:intron | 35.0% | |
| ACTGTTATGCTGCATTTACT+TGG | - | 10786:11130-11149 | MS.gene44412:intron | 35.0% | |
| AGCAACAGAGACATAAAAAG+TGG | + | 10786:10376-10395 | MS.gene44412:intergenic | 35.0% | |
| AGTACCCATGAAAATACTGA+TGG | + | 10786:10236-10255 | MS.gene44412:intergenic | 35.0% | |
| ATTGAGATTTGGCAATCGAA+TGG | - | 10786:9953-9972 | MS.gene44412:intron | 35.0% | |
| ATTTCAGAACCTACATACTC+TGG | - | 10786:11241-11260 | MS.gene44412:intron | 35.0% | |
| ATTTGACTATCGAGCATAAG+AGG | - | 10786:9304-9323 | MS.gene44412:CDS | 35.0% | |
| CCTGAAGATAGCAAAAAATC+AGG | + | 10786:10745-10764 | MS.gene44412:intergenic | 35.0% | |
| GTACCCATGAAAATACTGAT+GGG | + | 10786:10235-10254 | MS.gene44412:intergenic | 35.0% | |
| TCAAATCAACAAAAGTGGCA+TGG | + | 10786:10588-10607 | MS.gene44412:intergenic | 35.0% | |
| TCTGTGAAATCAATGTTGGA+TGG | - | 10786:10314-10333 | MS.gene44412:intron | 35.0% | |
| TGTGATTTACCGGAAGTTTA+CGG | + | 10786:10537-10556 | MS.gene44412:intergenic | 35.0% | |
| TTATAGCATGCCCAGAAATA+AGG | + | 10786:10169-10188 | MS.gene44412:intergenic | 35.0% | |
| TTTGTGTCTCCTGAAAATGT+TGG | - | 10786:10484-10503 | MS.gene44412:intron | 35.0% | |
| ! | ACTCCCATCAGTATTTTCAT+GGG | - | 10786:10229-10248 | MS.gene44412:intron | 35.0% |
| ! | GTCATTAGCTTCTTTCAACT+AGG | - | 10786:10659-10678 | MS.gene44412:intron | 35.0% |
| ! | TAGATTTTGCAAAAGCTACC+GGG | + | 10786:10923-10942 | MS.gene44412:intergenic | 35.0% |
| ! | TCACATAGTGAGTTTGAGTT+CGG | + | 10786:10027-10046 | MS.gene44412:intergenic | 35.0% |
| !! | ATAAAAGTGCTGATCATGGA+TGG | + | 10786:9286-9305 | MS.gene44412:intergenic | 35.0% |
| !! | CCAACATTGATTTCACAGAT+CGG | + | 10786:10313-10332 | MS.gene44412:intergenic | 35.0% |
| !! | GAGTATGTAGGTTCTGAAAT+AGG | + | 10786:11241-11260 | MS.gene44412:intergenic | 35.0% |
| !! | TAAAAGTGCTGATCATGGAT+GGG | + | 10786:9285-9304 | MS.gene44412:intergenic | 35.0% |
| !! | TATTTCTGGGCATGCTATAA+AGG | - | 10786:10169-10188 | MS.gene44412:CDS | 35.0% |
| !!! | CCTGATTTTTTGCTATCTTC+AGG | - | 10786:10742-10761 | MS.gene44412:intron | 35.0% |
| AGAGGAATTCCGTAAACTTC+CGG | - | 10786:10525-10544 | MS.gene44412:intron | 40.0% | |
| AGCATAACAGTGCTATCACT+AGG | + | 10786:11121-11140 | MS.gene44412:intergenic | 40.0% | |
| ATACCTTCAGATTTCGGACT+TGG | + | 10786:9514-9533 | MS.gene44412:intergenic | 40.0% | |
| ATATGCTATGCTTGATCTGG+TGG | - | 10786:11365-11384 | MS.gene44412:CDS | 40.0% | |
| CACAAAATCAAGAGCAACCT+TGG | + | 10786:10470-10489 | MS.gene44412:intergenic | 40.0% | |
| CCCAGAAATAAGGTAGCTAT+GGG | + | 10786:10159-10178 | MS.gene44412:intergenic | 40.0% | |
| CCGATCTGTGAAATCAATGT+TGG | - | 10786:10310-10329 | MS.gene44412:intron | 40.0% | |
| CTATCACTAGGTGAAACTGA+GGG | + | 10786:11109-11128 | MS.gene44412:intergenic | 40.0% | |
| CTGCATTTACTTGGTTGAAC+TGG | - | 10786:11139-11158 | MS.gene44412:intron | 40.0% | |
| GACTTGTAGGAATTGAACCT+TGG | - | 10786:9435-9454 | MS.gene44412:intron | 40.0% | |
| GTAAACTTCCGGTAAATCAC+AGG | - | 10786:10536-10555 | MS.gene44412:intron | 40.0% | |
| TTTCATGGGTACTCTTCACA+TGG | - | 10786:10243-10262 | MS.gene44412:intron | 40.0% | |
| TTTGGCAATCGAATGGAGTT+AGG | - | 10786:9960-9979 | MS.gene44412:intron | 40.0% | |
| ! | AGCTTCTGGAAAAAAGTCCA+AGG | + | 10786:9455-9474 | MS.gene44412:intergenic | 40.0% |
| ! | CCCATAGCTACCTTATTTCT+GGG | - | 10786:10156-10175 | MS.gene44412:CDS | 40.0% |
| ! | GACTCCCATCAGTATTTTCA+TGG | - | 10786:10228-10247 | MS.gene44412:intron | 40.0% |
| ! | TCCCATAGCTACCTTATTTC+TGG | - | 10786:10155-10174 | MS.gene44412:CDS | 40.0% |
| ! | TCTTCAGGTCCCGTTTATTT+TGG | - | 10786:10757-10776 | MS.gene44412:intron | 40.0% |
| !! | AAAAGTGCTGATCATGGATG+GGG | + | 10786:9284-9303 | MS.gene44412:intergenic | 40.0% |
| !!! | AATGTTTTGGGTTTGAGCAG+CGG | - | 10786:9371-9390 | MS.gene44412:intron | 40.0% |
| !!! | ACCTCGAACCTTTTTTACCT+CGG | + | 10786:9821-9840 | MS.gene44412:intergenic | 40.0% |
| !!! | TGGACTTTTTTCCAGAAGCT+AGG | - | 10786:9455-9474 | MS.gene44412:intron | 40.0% |
| AAACAGCATCTCCTAGCTTC+TGG | + | 10786:9469-9488 | MS.gene44411:intergenic | 45.0% | |
| ATGACAGGACCAGAGTATGT+AGG | + | 10786:11253-11272 | MS.gene44412:intergenic | 45.0% | |
| ATGTAATGTGGGCTCACAAC+AGG | - | 10786:10095-10114 | MS.gene44412:intron | 45.0% | |
| CAAATTCGAAGACCACCTCT+TGG | + | 10786:9901-9920 | MS.gene44412:intergenic | 45.0% | |
| CAAGAGGTGGTCTTCGAATT+TGG | - | 10786:9899-9918 | MS.gene44412:intron | 45.0% | |
| CAGCGGTGATCAATTGACAT+GGG | - | 10786:9388-9407 | MS.gene44412:intron | 45.0% | |
| GCCCAGAAATAAGGTAGCTA+TGG | + | 10786:10160-10179 | MS.gene44412:intergenic | 45.0% | |
| GCTATCACTAGGTGAAACTG+AGG | + | 10786:11110-11129 | MS.gene44412:intergenic | 45.0% | |
| TACCTCCAATTTGTCCTCTG+TGG | + | 10786:10563-10582 | MS.gene44412:intergenic | 45.0% | |
| TCCGAGGTAAAAAAGGTTCG+AGG | - | 10786:9817-9836 | MS.gene44412:intron | 45.0% | |
| TCTGTGGACCTGTGATTTAC+CGG | + | 10786:10547-10566 | MS.gene44412:intergenic | 45.0% | |
| TGACTATCGAGCATAAGAGG+AGG | - | 10786:9307-9326 | MS.gene44412:CDS | 45.0% | |
| ! | AAAATGGACTCTCCAAGAGG+TGG | - | 10786:9886-9905 | MS.gene44412:intron | 45.0% |
| ! | AAGCACTCGCCAACATTTTC+AGG | + | 10786:10496-10515 | MS.gene44412:intergenic | 45.0% |
| ! | AGGAAAATGGACTCTCCAAG+AGG | - | 10786:9883-9902 | MS.gene44412:intron | 45.0% |
| ! | CACAGTCGTCGGTAGTTTTT+AGG | + | 10786:10209-10228 | MS.gene44412:intergenic | 45.0% |
| ! | CATTTTGCAGTCATGCACCA+AGG | - | 10786:10450-10469 | MS.gene44412:intron | 45.0% |
| ! | CTTGGTGCATGACTGCAAAA+TGG | + | 10786:10452-10471 | MS.gene44412:intergenic | 45.0% |
| !! | AACTGAGGGTGCGTTAGTTT+TGG | + | 10786:11095-11114 | MS.gene44412:intergenic | 45.0% |
| !! | TTCAGATTTCGGACTTGGTG+CGG | + | 10786:9509-9528 | MS.gene44412:intergenic | 45.0% |
| !!! | GATGCTGTTTTCATTCCAGC+TGG | - | 10786:9479-9498 | MS.gene44412:intron | 45.0% |
| AATGTGGGCTCACAACAGGT+GGG | - | 10786:10099-10118 | MS.gene44412:intron | 50.0% | |
| AGGAGGCTTAAGGAGGAGTA+TGG | - | 10786:9324-9343 | MS.gene44412:intron | 50.0% | |
| CAGGTCCACAGAGGACAAAT+TGG | - | 10786:10555-10574 | MS.gene44412:intron | 50.0% | |
| CGAGCATAAGAGGAGGCTTA+AGG | - | 10786:9314-9333 | MS.gene44412:intron | 50.0% | |
| CGAGTGCTTTCGTTTGACAG+AGG | - | 10786:10507-10526 | MS.gene44412:intron | 50.0% | |
| GCACCAAGTCCGAAATCTGA+AGG | - | 10786:9508-9527 | MS.gene44412:intron | 50.0% | |
| GCAGCGGTGATCAATTGACA+TGG | - | 10786:9387-9406 | MS.gene44412:intron | 50.0% | |
| GCATAAGAGGAGGCTTAAGG+AGG | - | 10786:9317-9336 | MS.gene44412:intron | 50.0% | |
| GCTTGATCTGGTGGAGAAGT+TGG | - | 10786:11374-11393 | MS.gene44412:CDS | 50.0% | |
| GGTAAATCACAGGTCCACAG+AGG | - | 10786:10546-10565 | MS.gene44412:intron | 50.0% | |
| GTCCACAGAGGACAAATTGG+AGG | - | 10786:10558-10577 | MS.gene44412:intron | 50.0% | |
| TAATGTGGGCTCACAACAGG+TGG | - | 10786:10098-10117 | MS.gene44412:intron | 50.0% | |
| TGATCTGGTGGAGAAGTTGG+AGG | - | 10786:11377-11396 | MS.gene44412:CDS | 50.0% | |
| TGGAGAAGTTGGAGGAAGCA+AGG | - | 10786:11385-11404 | MS.gene44412:CDS | 50.0% | |
| CTGATGGGAGTCACAGTCGT+CGG | + | 10786:10220-10239 | MS.gene44412:intergenic | 55.0% | |
| !! | ACTTGGTGCGGACAACCAGC+TGG | + | 10786:9497-9516 | MS.gene44412:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| 10786 | gene | 9273 | 11406 | 9273 | ID=MS.gene44412 |
| 10786 | mRNA | 9273 | 11406 | 9273 | ID=MS.gene44412.t1;Parent=MS.gene44412 |
| 10786 | exon | 11334 | 11406 | 11334 | ID=MS.gene44412.t1.exon1;Parent=MS.gene44412.t1 |
| 10786 | CDS | 11334 | 11406 | 11334 | ID=cds.MS.gene44412.t1;Parent=MS.gene44412.t1 |
| 10786 | exon | 11150 | 11235 | 11150 | ID=MS.gene44412.t1.exon2;Parent=MS.gene44412.t1 |
| 10786 | CDS | 11150 | 11235 | 11150 | ID=cds.MS.gene44412.t1;Parent=MS.gene44412.t1 |
| 10786 | exon | 10100 | 10219 | 10100 | ID=MS.gene44412.t1.exon3;Parent=MS.gene44412.t1 |
| 10786 | CDS | 10100 | 10219 | 10100 | ID=cds.MS.gene44412.t1;Parent=MS.gene44412.t1 |
| 10786 | exon | 9273 | 9331 | 9273 | ID=MS.gene44412.t1.exon4;Parent=MS.gene44412.t1 |
| 10786 | CDS | 9273 | 9331 | 9273 | ID=cds.MS.gene44412.t1;Parent=MS.gene44412.t1 |
| Gene Sequence |
| Protein sequence |
