Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene46500.t1 | XP_024632996.1 | 91.7 | 314 | 26 | 0 | 10 | 323 | 39 | 352 | 6.40E-162 | 580.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene46500.t1 | Q84WU2 | 42.3 | 97 | 54 | 2 | 10 | 104 | 84 | 180 | 1.7e-14 | 81.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene46500.t1 | A0A396JXC2 | 91.7 | 314 | 26 | 0 | 10 | 323 | 39 | 352 | 4.6e-162 | 580.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene051959 | MS.gene46500 | 0.812198 | 4.78E-51 | -1.69E-46 |
| MS.gene051960 | MS.gene46500 | 0.809633 | 1.72E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene46500 | MS.gene057070 | PPI |
| MS.gene46500 | MS.gene030045 | PPI |
| MS.gene46500 | MS.gene017100 | PPI |
| MS.gene038330 | MS.gene46500 | PPI |
| MS.gene46500 | MS.gene030026 | PPI |
| MS.gene017102 | MS.gene46500 | PPI |
| MS.gene46500 | MS.gene038342 | PPI |
| MS.gene46500 | MS.gene017102 | PPI |
| MS.gene46500 | MS.gene038326 | PPI |
| MS.gene46500 | MS.gene017083 | PPI |
| MS.gene46500 | MS.gene038328 | PPI |
| MS.gene46500 | MS.gene030042 | PPI |
| MS.gene46500 | MS.gene057065 | PPI |
| MS.gene46500 | MS.gene030034 | PPI |
| MS.gene030033 | MS.gene46500 | PPI |
| MS.gene46500 | MS.gene017115 | PPI |
| MS.gene46500 | MS.gene038324 | PPI |
| MS.gene038336 | MS.gene46500 | PPI |
| MS.gene46500 | MS.gene057066 | PPI |
| MS.gene46500 | MS.gene030029 | PPI |
| MS.gene46500 | MS.gene057069 | PPI |
| MS.gene46500 | MS.gene017101 | PPI |
| MS.gene46500 | MS.gene017099 | PPI |
| MS.gene46500 | MS.gene030037 | PPI |
| MS.gene46500 | MS.gene057090 | PPI |
| MS.gene038323 | MS.gene46500 | PPI |
| MS.gene46500 | MS.gene038300 | PPI |
| MS.gene46500 | MS.gene038327 | PPI |
| MS.gene038333 | MS.gene46500 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene46500.t1 | MTR_7g107200 | 31.579 | 342 | 198 | 7 | 10 | 322 | 43 | 377 | 2.17e-52 | 177 |
| MS.gene46500.t1 | MTR_8g011730 | 33.803 | 284 | 146 | 8 | 38 | 295 | 75 | 342 | 1.02e-39 | 143 |
| MS.gene46500.t1 | MTR_1g042160 | 31.338 | 284 | 147 | 8 | 37 | 319 | 72 | 308 | 3.83e-37 | 135 |
| MS.gene46500.t1 | MTR_7g107170 | 41.259 | 143 | 81 | 2 | 177 | 319 | 124 | 263 | 3.64e-30 | 115 |
| MS.gene46500.t1 | MTR_7g107160 | 29.642 | 307 | 174 | 9 | 19 | 321 | 177 | 445 | 1.29e-28 | 115 |
| MS.gene46500.t1 | MTR_2g034780 | 31.319 | 182 | 115 | 3 | 125 | 306 | 84 | 255 | 1.23e-23 | 98.2 |
| MS.gene46500.t1 | MTR_3g079840 | 41.237 | 97 | 55 | 2 | 10 | 104 | 85 | 181 | 1.32e-15 | 78.2 |
| MS.gene46500.t1 | MTR_3g079840 | 41.237 | 97 | 55 | 2 | 10 | 104 | 86 | 182 | 1.32e-15 | 78.2 |
| MS.gene46500.t1 | MTR_5g086700 | 37.736 | 106 | 64 | 2 | 1 | 104 | 81 | 186 | 2.12e-15 | 77.4 |
| MS.gene46500.t1 | MTR_5g086700 | 37.736 | 106 | 64 | 2 | 1 | 104 | 81 | 186 | 2.20e-15 | 77.4 |
| MS.gene46500.t1 | MTR_1g041240 | 38.144 | 97 | 58 | 2 | 10 | 104 | 86 | 182 | 3.22e-14 | 73.9 |
| MS.gene46500.t1 | MTR_1g041240 | 38.144 | 97 | 58 | 2 | 10 | 104 | 87 | 183 | 3.22e-14 | 73.9 |
| MS.gene46500.t1 | MTR_1g041240 | 38.144 | 97 | 58 | 2 | 10 | 104 | 85 | 181 | 3.50e-14 | 73.9 |
| MS.gene46500.t1 | MTR_5g091450 | 33.333 | 99 | 63 | 3 | 10 | 105 | 62 | 160 | 2.31e-11 | 65.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene46500.t1 | AT3G11910 | 42.268 | 97 | 54 | 2 | 10 | 104 | 83 | 179 | 1.09e-16 | 81.6 |
| MS.gene46500.t1 | AT3G11910 | 42.268 | 97 | 54 | 2 | 10 | 104 | 83 | 179 | 1.09e-16 | 81.6 |
| MS.gene46500.t1 | AT3G11910 | 42.268 | 97 | 54 | 2 | 10 | 104 | 84 | 180 | 1.10e-16 | 81.6 |
| MS.gene46500.t1 | AT3G11910 | 42.268 | 97 | 54 | 2 | 10 | 104 | 84 | 180 | 1.10e-16 | 81.6 |
| MS.gene46500.t1 | AT5G06600 | 40.206 | 97 | 56 | 2 | 10 | 104 | 85 | 181 | 2.97e-16 | 80.1 |
| MS.gene46500.t1 | AT5G06600 | 40.206 | 97 | 56 | 2 | 10 | 104 | 84 | 180 | 3.13e-16 | 80.1 |
| MS.gene46500.t1 | AT5G06600 | 40.206 | 97 | 56 | 2 | 10 | 104 | 85 | 181 | 3.22e-16 | 80.1 |
Find 59 sgRNAs with CRISPR-Local
Find 84 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAATGAATTTATTGAAATTT+AGG | 0.097481 | 1.1:-42326947 | None:intergenic |
| TTTAGGTGTGAAACCTTATT+TGG | 0.176545 | 1.1:+42327478 | MS.gene46500:CDS |
| TAGCATTAACATTCATTTCT+TGG | 0.196289 | 1.1:-42327643 | None:intergenic |
| TCACAAGATACCCTTGTTTA+TGG | 0.211988 | 1.1:-42326971 | None:intergenic |
| TTGCTTGCTCTTTCCAAATA+AGG | 0.215332 | 1.1:-42327491 | None:intergenic |
| GATCTGTTAGAGATGAATTT+TGG | 0.232734 | 1.1:-42327070 | None:intergenic |
| ATTAAGACAATTTATAGATT+TGG | 0.265024 | 1.1:+42327184 | MS.gene46500:CDS |
| CCTTATGTTAAATCTGCTTT+AGG | 0.292555 | 1.1:+42327461 | MS.gene46500:CDS |
| CAATGGGCGTTTATTTCATT+AGG | 0.313100 | 1.1:+42327314 | MS.gene46500:CDS |
| GATGTTGAACCTGATGTTCT+TGG | 0.313287 | 1.1:-42327122 | None:intergenic |
| AAGAACAAGAACATTGTAAA+AGG | 0.329093 | 1.1:+42326482 | MS.gene46500:CDS |
| CCATTAAATACAACGTAAAA+TGG | 0.335460 | 1.1:-42326385 | None:intergenic |
| ATCCCGTTTGTTTCGACAAT+GGG | 0.347875 | 1.1:+42327298 | MS.gene46500:CDS |
| GAAGAAGCTTAGGGATGAAT+TGG | 0.365012 | 1.1:+42327559 | MS.gene46500:CDS |
| ACAGGATAAAGTTGTTGCTT+TGG | 0.378179 | 1.1:+42327526 | MS.gene46500:CDS |
| AAGCAAATTGAAGAAATTAC+AGG | 0.378860 | 1.1:+42327508 | MS.gene46500:CDS |
| GCTGATTCTTTACCACCATA+TGG | 0.384239 | 1.1:+42326410 | MS.gene46500:CDS |
| ATGAATGTTAATGCTACAAT+AGG | 0.395264 | 1.1:+42327650 | MS.gene46500:CDS |
| CCTTGAATCTCTCCTTCATC+TGG | 0.397555 | 1.1:-42327149 | None:intergenic |
| CGCCCATTGTCGAAACAAAC+GGG | 0.404272 | 1.1:-42327300 | None:intergenic |
| ATATTAAAATGAAGAAGCTT+AGG | 0.428129 | 1.1:+42327549 | MS.gene46500:CDS |
| TAAACAATCTTAAGAGTTTG+TGG | 0.445086 | 1.1:+42327393 | MS.gene46500:CDS |
| TGGTCAACATCCCTCCTTAG+TGG | 0.451823 | 1.1:-42326365 | None:intergenic |
| GGCTTATCAGAAATCAGAAA+TGG | 0.452452 | 1.1:+42327617 | MS.gene46500:CDS |
| AGATCAATCTTCAGATGAAA+GGG | 0.455070 | 1.1:+42327088 | MS.gene46500:CDS |
| CATCGGAATTCGACTTGAGT+TGG | 0.457368 | 1.1:+42327432 | MS.gene46500:CDS |
| ACGCCCATTGTCGAAACAAA+CGG | 0.462214 | 1.1:-42327301 | None:intergenic |
| GTTAGTTCTCGTTAATCAGC+TGG | 0.462338 | 1.1:+42326457 | MS.gene46500:CDS |
| GAGACTCAGCAAAAGTTCAA+TGG | 0.462872 | 1.1:+42326897 | MS.gene46500:intron |
| ATATGTCTTCATCATGTGAT+AGG | 0.463059 | 1.1:+42326327 | MS.gene46500:CDS |
| CCTAAAGCAGATTTAACATA+AGG | 0.466436 | 1.1:-42327461 | None:intergenic |
| ACAATTAGTCCAAGAACATC+AGG | 0.475342 | 1.1:+42327113 | MS.gene46500:CDS |
| CAGATCAATCTTCAGATGAA+AGG | 0.479808 | 1.1:+42327087 | MS.gene46500:CDS |
| TCAATGGAGGATATAGAAGC+TGG | 0.483484 | 1.1:+42326913 | MS.gene46500:CDS |
| CCAGATGAAGGAGAGATTCA+AGG | 0.494194 | 1.1:+42327149 | MS.gene46500:CDS |
| GAGTTTGAAGTTGCAAGGAA+AGG | 0.497249 | 1.1:+42327596 | MS.gene46500:CDS |
| AAACAATCTTAAGAGTTTGT+GGG | 0.500829 | 1.1:+42327394 | MS.gene46500:CDS |
| TATTAAAATGAAGAAGCTTA+GGG | 0.501449 | 1.1:+42327550 | MS.gene46500:CDS |
| AGACAATTTATAGATTTGGA+TGG | 0.504986 | 1.1:+42327188 | MS.gene46500:CDS |
| ATTCTTTACCACCATATGGA+TGG | 0.506704 | 1.1:+42326414 | MS.gene46500:CDS |
| TTCTTTACCACCATATGGAT+GGG | 0.526863 | 1.1:+42326415 | MS.gene46500:CDS |
| GTGTTTCTATCCCATCCATA+TGG | 0.542297 | 1.1:-42326425 | None:intergenic |
| AATCCCGTTTGTTTCGACAA+TGG | 0.547890 | 1.1:+42327297 | MS.gene46500:CDS |
| AAGCAGAGTTTGAAGTTGCA+AGG | 0.552990 | 1.1:+42327591 | MS.gene46500:CDS |
| ATTTGACTTTGTATCAAAGA+CGG | 0.558711 | 1.1:-42327269 | None:intergenic |
| CAATGGAGGATATAGAAGCT+GGG | 0.563913 | 1.1:+42326914 | MS.gene46500:CDS |
| AGATCCTTGTGCATCCACTA+AGG | 0.569109 | 1.1:+42326351 | MS.gene46500:CDS |
| AACGAGAACTAACTTGAAGA+AGG | 0.575362 | 1.1:-42326447 | None:intergenic |
| TCAACATCTAGTCCAGATGA+AGG | 0.586033 | 1.1:+42327137 | MS.gene46500:CDS |
| AAATTCATTGACCATAAACA+AGG | 0.592420 | 1.1:+42326960 | MS.gene46500:CDS |
| TCCTTGTGCATCCACTAAGG+AGG | 0.614099 | 1.1:+42326354 | MS.gene46500:CDS |
| GGAGGAACTAGCAAAATCAT+CGG | 0.617394 | 1.1:+42327415 | MS.gene46500:CDS |
| CCTTGTGCATCCACTAAGGA+GGG | 0.618988 | 1.1:+42326355 | MS.gene46500:CDS |
| CAATCTTAAGAGTTTGTGGG+AGG | 0.629922 | 1.1:+42327397 | MS.gene46500:CDS |
| CCCTCCTTAGTGGATGCACA+AGG | 0.633723 | 1.1:-42326355 | None:intergenic |
| TTTCTATCCCATCCATATGG+TGG | 0.636196 | 1.1:-42326422 | None:intergenic |
| ACTCAGCAAAAGTTCAATGG+AGG | 0.650485 | 1.1:+42326900 | MS.gene46500:CDS |
| AATGGAGGATATAGAAGCTG+GGG | 0.652315 | 1.1:+42326915 | MS.gene46500:CDS |
| AATTCATTGACCATAAACAA+GGG | 0.668373 | 1.1:+42326961 | MS.gene46500:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ACAAAAAATATTATCATTAG+AGG | - | chr1.1:42326833-42326852 | None:intergenic | 15.0% |
| !! | ATTAAGACAATTTATAGATT+TGG | + | chr1.1:42327184-42327203 | MS.gene46500:CDS | 15.0% |
| !! | CAATGAATTTATTGAAATTT+AGG | - | chr1.1:42326950-42326969 | None:intergenic | 15.0% |
| !! | ATAAATGACAAAACTAGTAA+AGG | - | chr1.1:42326532-42326551 | None:intergenic | 20.0% |
| !! | ATATTAAAATGAAGAAGCTT+AGG | + | chr1.1:42327549-42327568 | MS.gene46500:CDS | 20.0% |
| !! | TAAATGACAAAACTAGTAAA+GGG | - | chr1.1:42326531-42326550 | None:intergenic | 20.0% |
| !! | TATTAAAATGAAGAAGCTTA+GGG | + | chr1.1:42327550-42327569 | MS.gene46500:CDS | 20.0% |
| ! | AAACAATCTTAAGAGTTTGT+GGG | + | chr1.1:42327394-42327413 | MS.gene46500:CDS | 25.0% |
| ! | AAATGACAAAACTAGTAAAG+GGG | - | chr1.1:42326530-42326549 | None:intergenic | 25.0% |
| ! | AAATTCATTGACCATAAACA+AGG | + | chr1.1:42326960-42326979 | MS.gene46500:CDS | 25.0% |
| ! | AAGAACAAGAACATTGTAAA+AGG | + | chr1.1:42326482-42326501 | MS.gene46500:CDS | 25.0% |
| ! | AAGCAAATTGAAGAAATTAC+AGG | + | chr1.1:42327508-42327527 | MS.gene46500:CDS | 25.0% |
| ! | AATTCATTGACCATAAACAA+GGG | + | chr1.1:42326961-42326980 | MS.gene46500:CDS | 25.0% |
| ! | AGACAATTTATAGATTTGGA+TGG | + | chr1.1:42327188-42327207 | MS.gene46500:CDS | 25.0% |
| ! | ATGAACAGTTTGATCTTAAT+AGG | + | chr1.1:42326659-42326678 | MS.gene46500:intron | 25.0% |
| ! | ATGAATGTTAATGCTACAAT+AGG | + | chr1.1:42327650-42327669 | MS.gene46500:CDS | 25.0% |
| ! | CCATTAAATACAACGTAAAA+TGG | - | chr1.1:42326388-42326407 | None:intergenic | 25.0% |
| ! | TAAACAATCTTAAGAGTTTG+TGG | + | chr1.1:42327393-42327412 | MS.gene46500:CDS | 25.0% |
| ! | TAGCATTAACATTCATTTCT+TGG | - | chr1.1:42327646-42327665 | None:intergenic | 25.0% |
| !! | ATTTGACTTTGTATCAAAGA+CGG | - | chr1.1:42327272-42327291 | None:intergenic | 25.0% |
| !! | ATTTTAGACTTCTAGATGAA+AGG | + | chr1.1:42326750-42326769 | MS.gene46500:intron | 25.0% |
| !! | CCATTTTACGTTGTATTTAA+TGG | + | chr1.1:42326385-42326404 | MS.gene46500:CDS | 25.0% |
| !! | GAATTGATGTCATGAATTTT+TGG | - | chr1.1:42327044-42327063 | None:intergenic | 25.0% |
| !! | TTTTAGACTTCTAGATGAAA+GGG | + | chr1.1:42326751-42326770 | MS.gene46500:intron | 25.0% |
| AAGATCTAAAGGCTCATATT+TGG | + | chr1.1:42326625-42326644 | MS.gene46500:intron | 30.0% | |
| AGATCAATCTTCAGATGAAA+GGG | + | chr1.1:42327088-42327107 | MS.gene46500:CDS | 30.0% | |
| ATATGTCTTCATCATGTGAT+AGG | + | chr1.1:42326327-42326346 | MS.gene46500:CDS | 30.0% | |
| CCTAAAGCAGATTTAACATA+AGG | - | chr1.1:42327464-42327483 | None:intergenic | 30.0% | |
| CCTTATGTTAAATCTGCTTT+AGG | + | chr1.1:42327461-42327480 | MS.gene46500:CDS | 30.0% | |
| TTTAGGTGTGAAACCTTATT+TGG | + | chr1.1:42327478-42327497 | MS.gene46500:CDS | 30.0% | |
| ! | GATCTGTTAGAGATGAATTT+TGG | - | chr1.1:42327073-42327092 | None:intergenic | 30.0% |
| !!! | TAGAGATGAATTTTGGTTCA+AGG | - | chr1.1:42327066-42327085 | None:intergenic | 30.0% |
| AAAGGGGAGAATGAAGATAA+GGG | - | chr1.1:42326514-42326533 | None:intergenic | 35.0% | |
| AACGAGAACTAACTTGAAGA+AGG | - | chr1.1:42326450-42326469 | None:intergenic | 35.0% | |
| ACAATTAGTCCAAGAACATC+AGG | + | chr1.1:42327113-42327132 | MS.gene46500:CDS | 35.0% | |
| ATTCTTTACCACCATATGGA+TGG | + | chr1.1:42326414-42326433 | MS.gene46500:CDS | 35.0% | |
| CAATGGGCGTTTATTTCATT+AGG | + | chr1.1:42327314-42327333 | MS.gene46500:CDS | 35.0% | |
| CAGATCAATCTTCAGATGAA+AGG | + | chr1.1:42327087-42327106 | MS.gene46500:CDS | 35.0% | |
| CCTACCGAATCATTAAGTTA+GGG | + | chr1.1:42326592-42326611 | MS.gene46500:intron | 35.0% | |
| GGCTTATCAGAAATCAGAAA+TGG | + | chr1.1:42327617-42327636 | MS.gene46500:CDS | 35.0% | |
| TAAAGGGGAGAATGAAGATA+AGG | - | chr1.1:42326515-42326534 | None:intergenic | 35.0% | |
| TGAGCCTTTAGATCTTGATT+AGG | - | chr1.1:42326621-42326640 | None:intergenic | 35.0% | |
| TTCTTTACCACCATATGGAT+GGG | + | chr1.1:42326415-42326434 | MS.gene46500:CDS | 35.0% | |
| TTGCTTGCTCTTTCCAAATA+AGG | - | chr1.1:42327494-42327513 | None:intergenic | 35.0% | |
| ! | ACAGGATAAAGTTGTTGCTT+TGG | + | chr1.1:42327526-42327545 | MS.gene46500:CDS | 35.0% |
| ! | CGGAACAAAATGCTTTTCTT+CGG | - | chr1.1:42327222-42327241 | None:intergenic | 35.0% |
| ! | GGAACAAAATGCTTTTCTTC+GGG | - | chr1.1:42327221-42327240 | None:intergenic | 35.0% |
| ! | GTGCAAACTTCCTCTAAAAA+CGG | - | chr1.1:42327242-42327261 | None:intergenic | 35.0% |
| ! | TCACAAGATACCCTTGTTTA+TGG | - | chr1.1:42326974-42326993 | None:intergenic | 35.0% |
| !! | CCTAACTTAATGATTCGGTA+GGG | - | chr1.1:42326594-42326613 | None:intergenic | 35.0% |
| !! | GCATTTTGTTCCGTTTTTAG+AGG | + | chr1.1:42327229-42327248 | MS.gene46500:CDS | 35.0% |
| AATCCCGTTTGTTTCGACAA+TGG | + | chr1.1:42327297-42327316 | MS.gene46500:CDS | 40.0% | |
| AATGGAGGATATAGAAGCTG+GGG | + | chr1.1:42326915-42326934 | MS.gene46500:CDS | 40.0% | |
| ACTCAGCAAAAGTTCAATGG+AGG | + | chr1.1:42326900-42326919 | MS.gene46500:CDS | 40.0% | |
| ATCCCGTTTGTTTCGACAAT+GGG | + | chr1.1:42327298-42327317 | MS.gene46500:CDS | 40.0% | |
| CAATCTTAAGAGTTTGTGGG+AGG | + | chr1.1:42327397-42327416 | MS.gene46500:CDS | 40.0% | |
| CAATGGAGGATATAGAAGCT+GGG | + | chr1.1:42326914-42326933 | MS.gene46500:CDS | 40.0% | |
| CCCTACCGAATCATTAAGTT+AGG | + | chr1.1:42326591-42326610 | MS.gene46500:intron | 40.0% | |
| GAAGAAGCTTAGGGATGAAT+TGG | + | chr1.1:42327559-42327578 | MS.gene46500:CDS | 40.0% | |
| GACGCCCTAACTTAATGATT+CGG | - | chr1.1:42326599-42326618 | None:intergenic | 40.0% | |
| GAGACTCAGCAAAAGTTCAA+TGG | + | chr1.1:42326897-42326916 | MS.gene46500:intron | 40.0% | |
| GATGTTGAACCTGATGTTCT+TGG | - | chr1.1:42327125-42327144 | None:intergenic | 40.0% | |
| GCGTCCTAATCAAGATCTAA+AGG | + | chr1.1:42326614-42326633 | MS.gene46500:intron | 40.0% | |
| GGAGGAACTAGCAAAATCAT+CGG | + | chr1.1:42327415-42327434 | MS.gene46500:CDS | 40.0% | |
| TCAACATCTAGTCCAGATGA+AGG | + | chr1.1:42327137-42327156 | MS.gene46500:CDS | 40.0% | |
| TCAATGGAGGATATAGAAGC+TGG | + | chr1.1:42326913-42326932 | MS.gene46500:CDS | 40.0% | |
| TTTCTATCCCATCCATATGG+TGG | - | chr1.1:42326425-42326444 | None:intergenic | 40.0% | |
| ! | AAGCAGAGTTTGAAGTTGCA+AGG | + | chr1.1:42327591-42327610 | MS.gene46500:CDS | 40.0% |
| ! | GAGTTTGAAGTTGCAAGGAA+AGG | + | chr1.1:42327596-42327615 | MS.gene46500:CDS | 40.0% |
| ! | GCTGATTCTTTACCACCATA+TGG | + | chr1.1:42326410-42326429 | MS.gene46500:CDS | 40.0% |
| ! | GTGTTTCTATCCCATCCATA+TGG | - | chr1.1:42326428-42326447 | None:intergenic | 40.0% |
| ! | GTTAGTTCTCGTTAATCAGC+TGG | + | chr1.1:42326457-42326476 | MS.gene46500:CDS | 40.0% |
| !! | CCCTAACTTAATGATTCGGT+AGG | - | chr1.1:42326595-42326614 | None:intergenic | 40.0% |
| !! | TTTTAGAGGAAGTTTGCACG+TGG | + | chr1.1:42327243-42327262 | MS.gene46500:CDS | 40.0% |
| ACGCCCATTGTCGAAACAAA+CGG | - | chr1.1:42327304-42327323 | None:intergenic | 45.0% | |
| AGATCCTTGTGCATCCACTA+AGG | + | chr1.1:42326351-42326370 | MS.gene46500:CDS | 45.0% | |
| CCAGATGAAGGAGAGATTCA+AGG | + | chr1.1:42327149-42327168 | MS.gene46500:CDS | 45.0% | |
| CCTTGAATCTCTCCTTCATC+TGG | - | chr1.1:42327152-42327171 | None:intergenic | 45.0% | |
| ! | CATCGGAATTCGACTTGAGT+TGG | + | chr1.1:42327432-42327451 | MS.gene46500:CDS | 45.0% |
| CCTTGTGCATCCACTAAGGA+GGG | + | chr1.1:42326355-42326374 | MS.gene46500:CDS | 50.0% | |
| CGCCCATTGTCGAAACAAAC+GGG | - | chr1.1:42327303-42327322 | None:intergenic | 50.0% | |
| TCCTTGTGCATCCACTAAGG+AGG | + | chr1.1:42326354-42326373 | MS.gene46500:CDS | 50.0% | |
| TGGTCAACATCCCTCCTTAG+TGG | - | chr1.1:42326368-42326387 | None:intergenic | 50.0% | |
| ! | CCCTCCTTAGTGGATGCACA+AGG | - | chr1.1:42326358-42326377 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.1 | gene | 42326323 | 42327688 | 42326323 | ID=MS.gene46500 |
| chr1.1 | mRNA | 42326323 | 42327688 | 42326323 | ID=MS.gene46500.t1;Parent=MS.gene46500 |
| chr1.1 | exon | 42326323 | 42326503 | 42326323 | ID=MS.gene46500.t1.exon1;Parent=MS.gene46500.t1 |
| chr1.1 | CDS | 42326323 | 42326503 | 42326323 | ID=cds.MS.gene46500.t1;Parent=MS.gene46500.t1 |
| chr1.1 | exon | 42326898 | 42327688 | 42326898 | ID=MS.gene46500.t1.exon2;Parent=MS.gene46500.t1 |
| chr1.1 | CDS | 42326898 | 42327688 | 42326898 | ID=cds.MS.gene46500.t1;Parent=MS.gene46500.t1 |
| Gene Sequence |
| Protein sequence |
