Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene49386.t1 | XP_003590603.2 | 98.3 | 120 | 2 | 0 | 35 | 154 | 46 | 165 | 2.00E-57 | 231.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene49386.t1 | G7IDL8 | 98.3 | 120 | 2 | 0 | 35 | 154 | 46 | 165 | 1.5e-57 | 231.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049254 | MS.gene49386 | 0.819728 | 9.97E-53 | -1.69E-46 |
| MS.gene049669 | MS.gene49386 | 0.811764 | 5.95E-51 | -1.69E-46 |
| MS.gene049825 | MS.gene49386 | 0.826331 | 2.88E-54 | -1.69E-46 |
| MS.gene049873 | MS.gene49386 | 0.824603 | 7.38E-54 | -1.69E-46 |
| MS.gene050303 | MS.gene49386 | 0.814858 | 1.24E-51 | -1.69E-46 |
| MS.gene050355 | MS.gene49386 | 0.846049 | 2.77E-59 | -1.69E-46 |
| MS.gene051181 | MS.gene49386 | 0.808501 | 3.00E-50 | -1.69E-46 |
| MS.gene051744 | MS.gene49386 | 0.801924 | 7.16E-49 | -1.69E-46 |
| MS.gene052333 | MS.gene49386 | 0.808113 | 3.63E-50 | -1.69E-46 |
| MS.gene052358 | MS.gene49386 | -0.800392 | 1.47E-48 | -1.69E-46 |
| MS.gene052384 | MS.gene49386 | 0.813809 | 2.12E-51 | -1.69E-46 |
| MS.gene052519 | MS.gene49386 | 0.833014 | 6.80E-56 | -1.69E-46 |
| MS.gene052582 | MS.gene49386 | 0.814836 | 1.26E-51 | -1.69E-46 |
| MS.gene052584 | MS.gene49386 | 0.820521 | 6.56E-53 | -1.69E-46 |
| MS.gene052586 | MS.gene49386 | 0.82147 | 3.97E-53 | -1.69E-46 |
| MS.gene052685 | MS.gene49386 | 0.804633 | 1.97E-49 | -1.69E-46 |
| MS.gene053006 | MS.gene49386 | 0.831412 | 1.69E-55 | -1.69E-46 |
| MS.gene053226 | MS.gene49386 | 0.828106 | 1.08E-54 | -1.69E-46 |
| MS.gene053294 | MS.gene49386 | 0.817695 | 2.89E-52 | -1.69E-46 |
| MS.gene05365 | MS.gene49386 | 0.820977 | 5.16E-53 | -1.69E-46 |
| MS.gene053963 | MS.gene49386 | 0.842709 | 2.19E-58 | -1.69E-46 |
| MS.gene054651 | MS.gene49386 | 0.814059 | 1.87E-51 | -1.69E-46 |
| MS.gene054657 | MS.gene49386 | 0.818856 | 1.58E-52 | -1.69E-46 |
| MS.gene055586 | MS.gene49386 | 0.80905 | 2.29E-50 | -1.69E-46 |
| MS.gene056091 | MS.gene49386 | 0.816899 | 4.36E-52 | -1.69E-46 |
| MS.gene056162 | MS.gene49386 | 0.810211 | 1.29E-50 | -1.69E-46 |
| MS.gene056506 | MS.gene49386 | 0.806664 | 7.37E-50 | -1.69E-46 |
| MS.gene05659 | MS.gene49386 | 0.801491 | 8.78E-49 | -1.69E-46 |
| MS.gene056986 | MS.gene49386 | 0.800972 | 1.12E-48 | -1.69E-46 |
| MS.gene057024 | MS.gene49386 | 0.814011 | 1.91E-51 | -1.69E-46 |
| MS.gene057079 | MS.gene49386 | 0.805785 | 1.13E-49 | -1.69E-46 |
| MS.gene057208 | MS.gene49386 | 0.81142 | 7.06E-51 | -1.69E-46 |
| MS.gene057555 | MS.gene49386 | 0.805009 | 1.64E-49 | -1.69E-46 |
| MS.gene057693 | MS.gene49386 | 0.804927 | 1.71E-49 | -1.69E-46 |
| MS.gene058037 | MS.gene49386 | 0.809967 | 1.46E-50 | -1.69E-46 |
| MS.gene058498 | MS.gene49386 | 0.827992 | 1.15E-54 | -1.69E-46 |
| MS.gene058548 | MS.gene49386 | 0.814083 | 1.85E-51 | -1.69E-46 |
| MS.gene058549 | MS.gene49386 | 0.805872 | 1.08E-49 | -1.69E-46 |
| MS.gene05954 | MS.gene49386 | 0.845479 | 3.96E-59 | -1.69E-46 |
| MS.gene05979 | MS.gene49386 | 0.817125 | 3.88E-52 | -1.69E-46 |
| MS.gene059830 | MS.gene49386 | 0.80517 | 1.52E-49 | -1.69E-46 |
| MS.gene059935 | MS.gene49386 | 0.805333 | 1.40E-49 | -1.69E-46 |
| MS.gene060365 | MS.gene49386 | 0.801683 | 8.02E-49 | -1.69E-46 |
| MS.gene060572 | MS.gene49386 | 0.810119 | 1.35E-50 | -1.69E-46 |
| MS.gene060586 | MS.gene49386 | 0.828087 | 1.09E-54 | -1.69E-46 |
| MS.gene060879 | MS.gene49386 | 0.822647 | 2.12E-53 | -1.69E-46 |
| MS.gene061040 | MS.gene49386 | -0.815043 | 1.13E-51 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene49386.t1 | MTR_1g071630 | 91.925 | 161 | 6 | 1 | 1 | 154 | 5 | 165 | 8.31e-84 | 243 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene49386.t1 | AT4G04614 | 56.589 | 129 | 51 | 3 | 27 | 154 | 52 | 176 | 9.27e-42 | 137 |
| MS.gene49386.t1 | AT4G04614 | 56.589 | 129 | 51 | 3 | 27 | 154 | 52 | 176 | 9.27e-42 | 137 |
Find 36 sgRNAs with CRISPR-Local
Find 99 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTTCTTTGTGTCATCTTCTT+TGG | 0.118453 | 1.1:+53816944 | None:intergenic |
| TTCTTTGTGTCATCTTCTTT+GGG | 0.233840 | 1.1:+53816945 | None:intergenic |
| AGGGACAATGGAGTTTATTC+TGG | 0.281268 | 1.1:-53816690 | MS.gene49386:CDS |
| CTGAAGCGATACGGCTATAA+AGG | 0.293708 | 1.1:-53816996 | MS.gene49386:CDS |
| TAAATCTACAAAGCAGAAAA+AGG | 0.315518 | 1.1:-53817039 | MS.gene49386:CDS |
| AGGCGGACCTTCAGTCTTAA+AGG | 0.331123 | 1.1:-53816976 | MS.gene49386:CDS |
| TCTGAAAATGATAGTGAAAC+TGG | 0.358513 | 1.1:-53818139 | MS.gene49386:CDS |
| CTCAGAAGGAAAAGAAGAAA+AGG | 0.400791 | 1.1:-53816770 | MS.gene49386:CDS |
| GGGATCTTGGTCAAGCAAGC+AGG | 0.419342 | 1.1:-53816749 | MS.gene49386:CDS |
| GAAAAGAAGAAAAGGGATCT+TGG | 0.429119 | 1.1:-53816762 | MS.gene49386:CDS |
| TTCAGAGCTTCAAAGTCAAT+TGG | 0.442566 | 1.1:+53817014 | None:intergenic |
| AAGATGACACAAAGAAAGAT+TGG | 0.453949 | 1.1:-53816938 | MS.gene49386:CDS |
| GTGTCATCTTCTTTGGGTGG+AGG | 0.460313 | 1.1:+53816951 | None:intergenic |
| CAGTTGGCATTTGCTCTCCT+AGG | 0.493250 | 1.1:+53816829 | None:intergenic |
| ATTATGTTGAAGAAGAGAAA+AGG | 0.499802 | 1.1:-53816719 | MS.gene49386:CDS |
| GGATCTTGGTCAAGCAAGCA+GGG | 0.515240 | 1.1:-53816748 | MS.gene49386:CDS |
| TTTGTGTCATCTTCTTTGGG+TGG | 0.516808 | 1.1:+53816948 | None:intergenic |
| TCAGAAGGAAAAGAAGAAAA+GGG | 0.533332 | 1.1:-53816769 | MS.gene49386:CDS |
| AGAAGAGAAAAGGCTGTTGA+GGG | 0.535745 | 1.1:-53816709 | MS.gene49386:CDS |
| TCATTCCTAGTCAGAACAGT+TGG | 0.556209 | 1.1:+53816813 | None:intergenic |
| ACACAAAGAAAGATTGGTCC+TGG | 0.556354 | 1.1:-53816932 | MS.gene49386:CDS |
| ACAAGAGAGGCTCTTTCCCT+AGG | 0.557271 | 1.1:-53816846 | MS.gene49386:CDS |
| AAAAGGCTGTTGAGGGACAA+TGG | 0.563867 | 1.1:-53816702 | MS.gene49386:CDS |
| TTTGAAGCTCTGAAGCGATA+CGG | 0.565621 | 1.1:-53817005 | MS.gene49386:CDS |
| TTGGTCCTGGTCCAGTGGAA+AGG | 0.567873 | 1.1:-53816919 | MS.gene49386:CDS |
| AGTTGGCATTTGCTCTCCTA+GGG | 0.578927 | 1.1:+53816830 | None:intergenic |
| AAGAAGAGAAAAGGCTGTTG+AGG | 0.580825 | 1.1:-53816710 | MS.gene49386:CDS |
| AAAGATTGGTCCTGGTCCAG+TGG | 0.594354 | 1.1:-53816924 | MS.gene49386:CDS |
| GGAGGTACCTTTAAGACTGA+AGG | 0.597747 | 1.1:+53816969 | None:intergenic |
| AAATGCCAACTGTTCTGACT+AGG | 0.603014 | 1.1:-53816818 | MS.gene49386:CDS |
| CTATGAAGAGGACAATGCCA+TGG | 0.617111 | 1.1:-53818192 | None:intergenic |
| TCGTCATCATCATCACTCCA+TGG | 0.626378 | 1.1:+53818175 | None:intergenic |
| ATCTTGGTCAAGCAAGCAGG+GGG | 0.627378 | 1.1:-53816746 | MS.gene49386:CDS |
| GATCTTGGTCAAGCAAGCAG+GGG | 0.638659 | 1.1:-53816747 | MS.gene49386:CDS |
| AGAGAGAAAGAAAACAAGAG+AGG | 0.657420 | 1.1:-53816859 | MS.gene49386:CDS |
| AAGCGATACGGCTATAAAGG+CGG | 0.718806 | 1.1:-53816993 | MS.gene49386:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATGTAAATTAGAATATCG+GGG | - | chr1.1:53817575-53817594 | MS.gene49386:intron | 20.0% |
| !! | AAGAACTATTATAGCATTAT+CGG | + | chr1.1:53817486-53817505 | None:intergenic | 20.0% |
| !! | AGACAATAATATATTGCTAA+CGG | + | chr1.1:53817612-53817631 | None:intergenic | 20.0% |
| !! | ATAATCACATTAAGATAGAA+CGG | + | chr1.1:53817068-53817087 | None:intergenic | 20.0% |
| !! | ATATAATTCAACGTAGTTAT+AGG | + | chr1.1:53816778-53816797 | None:intergenic | 20.0% |
| !! | ATATTCTAATTTACATTTCC+TGG | + | chr1.1:53817573-53817592 | None:intergenic | 20.0% |
| !! | GAAATCTAATGTGATAAATT+AGG | - | chr1.1:53817221-53817240 | MS.gene49386:intron | 20.0% |
| !! | GAAATGTAAATTAGAATATC+GGG | - | chr1.1:53817574-53817593 | MS.gene49386:intron | 20.0% |
| !! | GGAAATGTAAATTAGAATAT+CGG | - | chr1.1:53817573-53817592 | MS.gene49386:intron | 20.0% |
| !! | TGATAAGTGAAAATAGTATT+TGG | - | chr1.1:53817005-53817024 | MS.gene49386:CDS | 20.0% |
| !!! | ATCATTGTTTTAGATTTTGT+TGG | - | chr1.1:53817368-53817387 | MS.gene49386:intron | 20.0% |
| !!! | TAAAATACCTTTGGATTTTT+TGG | + | chr1.1:53816744-53816763 | None:intergenic | 20.0% |
| !!! | TCATTGTTTTAGATTTTGTT+GGG | - | chr1.1:53817369-53817388 | MS.gene49386:intron | 20.0% |
| ! | AAAACACAAACACTAATTGT+GGG | + | chr1.1:53817101-53817120 | None:intergenic | 25.0% |
| ! | AGTGATAGCTGATAATATTA+TGG | - | chr1.1:53817272-53817291 | MS.gene49386:intron | 25.0% |
| ! | ATTATGTTGAAGAAGAGAAA+AGG | - | chr1.1:53818136-53818155 | MS.gene49386:CDS | 25.0% |
| ! | CGTTGAATTATATGTTTAAG+TGG | - | chr1.1:53816785-53816804 | MS.gene49386:CDS | 25.0% |
| ! | GATTTATGAAACACTAACAA+CGG | - | chr1.1:53816851-53816870 | MS.gene49386:CDS | 25.0% |
| ! | TAAATCTACAAAGCAGAAAA+AGG | - | chr1.1:53817816-53817835 | MS.gene49386:intron | 25.0% |
| !! | ACAATTAGTGTTTGTGTTTT+GGG | - | chr1.1:53817101-53817120 | MS.gene49386:intron | 25.0% |
| !! | ATTATCTGAAGATCATTTTG+TGG | - | chr1.1:53817196-53817215 | MS.gene49386:intron | 25.0% |
| !!! | ACACTTTTAATCTGAAGTAT+CGG | - | chr1.1:53816968-53816987 | MS.gene49386:CDS | 25.0% |
| !!! | CATTGTTTTAGATTTTGTTG+GGG | - | chr1.1:53817370-53817389 | MS.gene49386:intron | 25.0% |
| AAATGGTTCATAAACAGTTG+TGG | - | chr1.1:53817433-53817452 | MS.gene49386:intron | 30.0% | |
| AAATGTACTTACTTGAACCT+AGG | - | chr1.1:53817030-53817049 | MS.gene49386:CDS | 30.0% | |
| AAGATGACACAAAGAAAGAT+TGG | - | chr1.1:53817917-53817936 | MS.gene49386:intron | 30.0% | |
| ACCAATAACAAGGAAATACA+AGG | + | chr1.1:53817340-53817359 | None:intergenic | 30.0% | |
| ACTAGTAACTAAGCAACATA+TGG | + | chr1.1:53817773-53817792 | None:intergenic | 30.0% | |
| ATCACAATACACCAATAACA+AGG | + | chr1.1:53817350-53817369 | None:intergenic | 30.0% | |
| ATGTGATAAATTAGGAGTTC+TGG | - | chr1.1:53817229-53817248 | MS.gene49386:intron | 30.0% | |
| CAAAACACAAACACTAATTG+TGG | + | chr1.1:53817102-53817121 | None:intergenic | 30.0% | |
| CAATAATATATTGCTAACGG+AGG | + | chr1.1:53817609-53817628 | None:intergenic | 30.0% | |
| GATACTTCAGATTAAAAGTG+TGG | + | chr1.1:53816969-53816988 | None:intergenic | 30.0% | |
| GCTAATTAAGTCACACAATA+TGG | + | chr1.1:53817643-53817662 | None:intergenic | 30.0% | |
| TCAGAAGGAAAAGAAGAAAA+GGG | - | chr1.1:53818086-53818105 | MS.gene49386:intron | 30.0% | |
| TTCTTTGTGTCATCTTCTTT+GGG | + | chr1.1:53817913-53817932 | None:intergenic | 30.0% | |
| TTTCTTTGTGTCATCTTCTT+TGG | + | chr1.1:53817914-53817933 | None:intergenic | 30.0% | |
| ! | AACTAGAGTAGATATTTTCC+AGG | - | chr1.1:53817552-53817571 | MS.gene49386:intron | 30.0% |
| ! | CACAATTAGTGTTTGTGTTT+TGG | - | chr1.1:53817100-53817119 | MS.gene49386:intron | 30.0% |
| ! | TCCTTGTATTTCCTTGTTAT+TGG | - | chr1.1:53817336-53817355 | MS.gene49386:intron | 30.0% |
| ! | TCTGAAAATGATAGTGAAAC+TGG | - | chr1.1:53816716-53816735 | MS.gene49386:CDS | 30.0% |
| !! | AAAATCTCATCTCTAGAATG+TGG | - | chr1.1:53817135-53817154 | MS.gene49386:intron | 30.0% |
| AAGGAATCTCTTCTACAATG+GGG | + | chr1.1:53817321-53817340 | None:intergenic | 35.0% | |
| AATCTAATCGTGTGTAGTGT+TGG | - | chr1.1:53816933-53816952 | MS.gene49386:CDS | 35.0% | |
| ACAAGGAATCTCTTCTACAA+TGG | + | chr1.1:53817323-53817342 | None:intergenic | 35.0% | |
| AGAGAGAAAGAAAACAAGAG+AGG | - | chr1.1:53817996-53818015 | MS.gene49386:intron | 35.0% | |
| CAAGAGTTTCTTGACTTTCA+AGG | - | chr1.1:53817528-53817547 | MS.gene49386:intron | 35.0% | |
| CAAGGAATCTCTTCTACAAT+GGG | + | chr1.1:53817322-53817341 | None:intergenic | 35.0% | |
| CTCAGAAGGAAAAGAAGAAA+AGG | - | chr1.1:53818085-53818104 | MS.gene49386:intron | 35.0% | |
| GAAAAGAAGAAAAGGGATCT+TGG | - | chr1.1:53818093-53818112 | MS.gene49386:intron | 35.0% | |
| GATGCACACTAAAATACCTT+TGG | + | chr1.1:53816753-53816772 | None:intergenic | 35.0% | |
| TCAGTTAGTGCAATGCAAAA+TGG | - | chr1.1:53817416-53817435 | MS.gene49386:intron | 35.0% | |
| TGACACTAACACTTTGATGT+TGG | - | chr1.1:53816883-53816902 | MS.gene49386:CDS | 35.0% | |
| TTAACTTACTTCATGTCTGC+AGG | - | chr1.1:53817793-53817812 | MS.gene49386:intron | 35.0% | |
| TTCAGAGCTTCAAAGTCAAT+TGG | + | chr1.1:53817844-53817863 | None:intergenic | 35.0% | |
| TTCAGATAATTTCAACGCAG+AGG | + | chr1.1:53817186-53817205 | None:intergenic | 35.0% | |
| ! | ATAGCATTATCGGCTGATTT+AGG | + | chr1.1:53817476-53817495 | None:intergenic | 35.0% |
| ! | GAATCTTTCCTTTTCTCAGA+AGG | - | chr1.1:53818071-53818090 | MS.gene49386:intron | 35.0% |
| ! | TTTTGCATTGCACTAACTGA+AGG | + | chr1.1:53817416-53817435 | None:intergenic | 35.0% |
| !! | CTTCTTTTCCTTCTGAGAAA+AGG | + | chr1.1:53818082-53818101 | None:intergenic | 35.0% |
| AAATGCCAACTGTTCTGACT+AGG | - | chr1.1:53818037-53818056 | MS.gene49386:intron | 40.0% | |
| AACTAAGCAACATATGGCAG+TGG | + | chr1.1:53817767-53817786 | None:intergenic | 40.0% | |
| AAGAAGAGAAAAGGCTGTTG+AGG | - | chr1.1:53818145-53818164 | MS.gene49386:CDS | 40.0% | |
| ACTAACTGAAGGTCAAGATG+GGG | + | chr1.1:53817405-53817424 | None:intergenic | 40.0% | |
| ACTGGAGCCAAAAAATCCAA+AGG | - | chr1.1:53816734-53816753 | MS.gene49386:CDS | 40.0% | |
| AGAAGAGAAAAGGCTGTTGA+GGG | - | chr1.1:53818146-53818165 | MS.gene49386:CDS | 40.0% | |
| AGGGACAATGGAGTTTATTC+TGG | - | chr1.1:53818165-53818184 | MS.gene49386:CDS | 40.0% | |
| AGTATGAAGCCATCATGATG+CGG | + | chr1.1:53817701-53817720 | None:intergenic | 40.0% | |
| CACTAACTGAAGGTCAAGAT+GGG | + | chr1.1:53817406-53817425 | None:intergenic | 40.0% | |
| CTTGAACCTAGGATGTTGAT+AGG | - | chr1.1:53817041-53817060 | MS.gene49386:CDS | 40.0% | |
| TCATTCCTAGTCAGAACAGT+TGG | + | chr1.1:53818045-53818064 | None:intergenic | 40.0% | |
| TTTGTGTCATCTTCTTTGGG+TGG | + | chr1.1:53817910-53817929 | None:intergenic | 40.0% | |
| ! | ACACAAAGAAAGATTGGTCC+TGG | - | chr1.1:53817923-53817942 | MS.gene49386:intron | 40.0% |
| !! | TTCTGAAATCCGCATCATGA+TGG | - | chr1.1:53817689-53817708 | MS.gene49386:intron | 40.0% |
| !! | TTTGAAGCTCTGAAGCGATA+CGG | - | chr1.1:53817850-53817869 | MS.gene49386:intron | 40.0% |
| AAAAGGCTGTTGAGGGACAA+TGG | - | chr1.1:53818153-53818172 | MS.gene49386:CDS | 45.0% | |
| AAAGGAAAAACGCGTCGAGA+AGG | - | chr1.1:53817954-53817973 | MS.gene49386:intron | 45.0% | |
| AACGCAGAGGTTTCATACCT+TGG | + | chr1.1:53817173-53817192 | None:intergenic | 45.0% | |
| AACGGACCTATCAACATCCT+AGG | + | chr1.1:53817050-53817069 | None:intergenic | 45.0% | |
| AAGCGATACGGCTATAAAGG+CGG | - | chr1.1:53817862-53817881 | MS.gene49386:intron | 45.0% | |
| AGTTGGCATTTGCTCTCCTA+GGG | + | chr1.1:53818028-53818047 | None:intergenic | 45.0% | |
| CTGAAGCGATACGGCTATAA+AGG | - | chr1.1:53817859-53817878 | MS.gene49386:intron | 45.0% | |
| GCACTAACTGAAGGTCAAGA+TGG | + | chr1.1:53817407-53817426 | None:intergenic | 45.0% | |
| TCGTCATCATCATCACTCCA+TGG | + | chr1.1:53816683-53816702 | None:intergenic | 45.0% | |
| ! | TTTTTCCTTTCCACTGGACC+AGG | + | chr1.1:53817944-53817963 | None:intergenic | 45.0% |
| !! | GGAGGTACCTTTAAGACTGA+AGG | + | chr1.1:53817889-53817908 | None:intergenic | 45.0% |
| !! | TCGTGTGTAGTGTTGGTGTA+CGG | - | chr1.1:53816940-53816959 | MS.gene49386:CDS | 45.0% |
| ACAAGAGAGGCTCTTTCCCT+AGG | - | chr1.1:53818009-53818028 | MS.gene49386:intron | 50.0% | |
| AGGCGGACCTTCAGTCTTAA+AGG | - | chr1.1:53817879-53817898 | MS.gene49386:intron | 50.0% | |
| ATCTTGGTCAAGCAAGCAGG+GGG | - | chr1.1:53818109-53818128 | MS.gene49386:intron | 50.0% | |
| CAGTTGGCATTTGCTCTCCT+AGG | + | chr1.1:53818029-53818048 | None:intergenic | 50.0% | |
| GATCTTGGTCAAGCAAGCAG+GGG | - | chr1.1:53818108-53818127 | MS.gene49386:intron | 50.0% | |
| GGATCTTGGTCAAGCAAGCA+GGG | - | chr1.1:53818107-53818126 | MS.gene49386:intron | 50.0% | |
| GTGTCATCTTCTTTGGGTGG+AGG | + | chr1.1:53817907-53817926 | None:intergenic | 50.0% | |
| ! | AAAGATTGGTCCTGGTCCAG+TGG | - | chr1.1:53817931-53817950 | MS.gene49386:intron | 50.0% |
| ! | GACGCGTTTTTCCTTTCCAC+TGG | + | chr1.1:53817950-53817969 | None:intergenic | 50.0% |
| ! | TGTGGATTGACGCTCATCCA+AGG | - | chr1.1:53817153-53817172 | MS.gene49386:intron | 50.0% |
| GGGATCTTGGTCAAGCAAGC+AGG | - | chr1.1:53818106-53818125 | MS.gene49386:intron | 55.0% | |
| TTGGTCCTGGTCCAGTGGAA+AGG | - | chr1.1:53817936-53817955 | MS.gene49386:intron | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.1 | gene | 53816677 | 53818200 | 53816677 | ID=MS.gene49386 |
| chr1.1 | mRNA | 53816677 | 53818200 | 53816677 | ID=MS.gene49386.t1;Parent=MS.gene49386 |
| chr1.1 | exon | 53818122 | 53818200 | 53818122 | ID=MS.gene49386.t1.exon1;Parent=MS.gene49386.t1 |
| chr1.1 | CDS | 53818122 | 53818200 | 53818122 | ID=cds.MS.gene49386.t1;Parent=MS.gene49386.t1 |
| chr1.1 | exon | 53816677 | 53817062 | 53816677 | ID=MS.gene49386.t1.exon2;Parent=MS.gene49386.t1 |
| chr1.1 | CDS | 53816677 | 53817062 | 53816677 | ID=cds.MS.gene49386.t1;Parent=MS.gene49386.t1 |
| Gene Sequence |
| Protein sequence |