Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene50073.t1 | RHN61275.1 | 78.1 | 105 | 23 | 0 | 1 | 105 | 34 | 138 | 1.40E-34 | 157.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene50073.t1 | G7JG40 | 78.1 | 105 | 23 | 0 | 1 | 105 | 34 | 138 | 1.0e-34 | 157.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049171 | MS.gene50073 | -0.807 | 6.26E-50 | -1.69E-46 |
| MS.gene04932 | MS.gene50073 | 0.87018 | 1.77E-66 | -1.69E-46 |
| MS.gene049549 | MS.gene50073 | 0.807279 | 5.46E-50 | -1.69E-46 |
| MS.gene050170 | MS.gene50073 | -0.817942 | 2.54E-52 | -1.69E-46 |
| MS.gene050326 | MS.gene50073 | 0.811982 | 5.33E-51 | -1.69E-46 |
| MS.gene050338 | MS.gene50073 | 0.853009 | 3.17E-61 | -1.69E-46 |
| MS.gene050444 | MS.gene50073 | -0.818691 | 1.72E-52 | -1.69E-46 |
| MS.gene050577 | MS.gene50073 | -0.810935 | 9.00E-51 | -1.69E-46 |
| MS.gene050710 | MS.gene50073 | 0.801339 | 9.43E-49 | -1.69E-46 |
| MS.gene051138 | MS.gene50073 | 0.80103 | 1.09E-48 | -1.69E-46 |
| MS.gene051439 | MS.gene50073 | 0.819064 | 1.41E-52 | -1.69E-46 |
| MS.gene051651 | MS.gene50073 | 0.839328 | 1.69E-57 | -1.69E-46 |
| MS.gene051874 | MS.gene50073 | -0.808394 | 3.16E-50 | -1.69E-46 |
| MS.gene052129 | MS.gene50073 | 0.816434 | 5.54E-52 | -1.69E-46 |
| MS.gene05240 | MS.gene50073 | 0.830927 | 2.23E-55 | -1.69E-46 |
| MS.gene052606 | MS.gene50073 | 0.829884 | 4.01E-55 | -1.69E-46 |
| MS.gene052702 | MS.gene50073 | 0.838079 | 3.56E-57 | -1.69E-46 |
| MS.gene052823 | MS.gene50073 | -0.804355 | 2.25E-49 | -1.69E-46 |
| MS.gene053479 | MS.gene50073 | -0.828495 | 8.71E-55 | -1.69E-46 |
| MS.gene053824 | MS.gene50073 | -0.807036 | 6.15E-50 | -1.69E-46 |
| MS.gene053916 | MS.gene50073 | -0.806756 | 7.05E-50 | -1.69E-46 |
| MS.gene054181 | MS.gene50073 | 0.822748 | 2.01E-53 | -1.69E-46 |
| MS.gene05470 | MS.gene50073 | -0.812612 | 3.88E-51 | -1.69E-46 |
| MS.gene054742 | MS.gene50073 | 0.804124 | 2.51E-49 | -1.69E-46 |
| MS.gene054884 | MS.gene50073 | 0.848964 | 4.38E-60 | -1.69E-46 |
| MS.gene054941 | MS.gene50073 | 0.816882 | 4.40E-52 | -1.69E-46 |
| MS.gene055251 | MS.gene50073 | 0.807576 | 4.73E-50 | -1.69E-46 |
| MS.gene055729 | MS.gene50073 | 0.801642 | 8.18E-49 | -1.69E-46 |
| MS.gene055730 | MS.gene50073 | 0.808796 | 2.60E-50 | -1.69E-46 |
| MS.gene055731 | MS.gene50073 | 0.808929 | 2.43E-50 | -1.69E-46 |
| MS.gene05589 | MS.gene50073 | -0.832118 | 1.13E-55 | -1.69E-46 |
| MS.gene056198 | MS.gene50073 | 0.810779 | 9.73E-51 | -1.69E-46 |
| MS.gene056387 | MS.gene50073 | -0.83665 | 8.26E-57 | -1.69E-46 |
| MS.gene056504 | MS.gene50073 | -0.805925 | 1.05E-49 | -1.69E-46 |
| MS.gene056590 | MS.gene50073 | 0.828246 | 1.00E-54 | -1.69E-46 |
| MS.gene056591 | MS.gene50073 | 0.827552 | 1.47E-54 | -1.69E-46 |
| MS.gene056688 | MS.gene50073 | 0.847198 | 1.35E-59 | -1.69E-46 |
| MS.gene056694 | MS.gene50073 | 0.88568 | 6.60E-72 | -1.69E-46 |
| MS.gene056697 | MS.gene50073 | 0.948977 | 3.22E-107 | -1.69E-46 |
| MS.gene056856 | MS.gene50073 | 0.848089 | 7.65E-60 | -1.69E-46 |
| MS.gene057261 | MS.gene50073 | 0.821683 | 3.54E-53 | -1.69E-46 |
| MS.gene057544 | MS.gene50073 | 0.812629 | 3.85E-51 | -1.69E-46 |
| MS.gene057547 | MS.gene50073 | 0.800948 | 1.13E-48 | -1.69E-46 |
| MS.gene057717 | MS.gene50073 | 0.81025 | 1.27E-50 | -1.69E-46 |
| MS.gene057768 | MS.gene50073 | 0.809054 | 2.29E-50 | -1.69E-46 |
| MS.gene058067 | MS.gene50073 | 0.809344 | 1.98E-50 | -1.69E-46 |
| MS.gene058334 | MS.gene50073 | 0.825189 | 5.37E-54 | -1.69E-46 |
| MS.gene058381 | MS.gene50073 | 0.808266 | 3.37E-50 | -1.69E-46 |
| MS.gene058382 | MS.gene50073 | 0.853658 | 2.07E-61 | -1.69E-46 |
| MS.gene058418 | MS.gene50073 | 0.800673 | 1.29E-48 | -1.69E-46 |
| MS.gene058419 | MS.gene50073 | -0.801461 | 8.91E-49 | -1.69E-46 |
| MS.gene058603 | MS.gene50073 | 0.803287 | 3.75E-49 | -1.69E-46 |
| MS.gene058838 | MS.gene50073 | -0.833046 | 6.68E-56 | -1.69E-46 |
| MS.gene059023 | MS.gene50073 | -0.806651 | 7.42E-50 | -1.69E-46 |
| MS.gene05926 | MS.gene50073 | 0.892686 | 1.26E-74 | -1.69E-46 |
| MS.gene059955 | MS.gene50073 | 0.800518 | 1.39E-48 | -1.69E-46 |
| MS.gene06000 | MS.gene50073 | -0.824481 | 7.89E-54 | -1.69E-46 |
| MS.gene060087 | MS.gene50073 | 0.823025 | 1.73E-53 | -1.69E-46 |
| MS.gene06027 | MS.gene50073 | -0.803803 | 2.93E-49 | -1.69E-46 |
| MS.gene060405 | MS.gene50073 | 0.851146 | 1.07E-60 | -1.69E-46 |
| MS.gene060593 | MS.gene50073 | 0.809682 | 1.68E-50 | -1.69E-46 |
| MS.gene06084 | MS.gene50073 | 0.808441 | 3.09E-50 | -1.69E-46 |
| MS.gene061044 | MS.gene50073 | 0.87239 | 3.30E-67 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene50073.t1 | MTR_4g069810 | 93.372 | 347 | 23 | 0 | 1 | 347 | 34 | 380 | 0.0 | 647 |
| MS.gene50073.t1 | MTR_3g034610 | 34.286 | 385 | 205 | 16 | 1 | 345 | 1 | 377 | 8.22e-45 | 158 |
| MS.gene50073.t1 | MTR_3g034610 | 36.678 | 289 | 168 | 12 | 44 | 321 | 120 | 404 | 1.26e-39 | 144 |
| MS.gene50073.t1 | MTR_3g116430 | 33.508 | 382 | 208 | 18 | 1 | 345 | 33 | 405 | 6.65e-44 | 156 |
| MS.gene50073.t1 | MTR_3g116430 | 32.020 | 203 | 131 | 6 | 44 | 240 | 225 | 426 | 4.69e-22 | 96.7 |
| MS.gene50073.t1 | MTR_3g116430 | 37.624 | 101 | 61 | 2 | 44 | 143 | 330 | 429 | 1.07e-11 | 65.9 |
| MS.gene50073.t1 | MTR_3g116440 | 36.842 | 342 | 181 | 15 | 1 | 322 | 33 | 359 | 2.95e-42 | 150 |
| MS.gene50073.t1 | MTR_3g116440 | 35.385 | 195 | 114 | 8 | 161 | 345 | 97 | 289 | 2.76e-20 | 90.9 |
| MS.gene50073.t1 | MTR_3g116440 | 36.723 | 177 | 103 | 7 | 179 | 347 | 90 | 265 | 7.27e-17 | 80.9 |
| MS.gene50073.t1 | MTR_3g034640 | 38.356 | 292 | 157 | 15 | 44 | 320 | 207 | 490 | 3.84e-42 | 153 |
| MS.gene50073.t1 | MTR_3g034640 | 32.360 | 411 | 207 | 17 | 1 | 345 | 33 | 438 | 5.66e-39 | 144 |
| MS.gene50073.t1 | MTR_3g034640 | 34.106 | 302 | 179 | 14 | 58 | 345 | 169 | 464 | 2.97e-38 | 142 |
| MS.gene50073.t1 | MTR_3g034640 | 35.319 | 235 | 143 | 8 | 44 | 271 | 259 | 491 | 1.10e-29 | 119 |
| MS.gene50073.t1 | MTR_3g107810 | 31.609 | 348 | 206 | 14 | 1 | 320 | 33 | 376 | 8.17e-23 | 99.4 |
| MS.gene50073.t1 | MTR_3g107810 | 31.164 | 292 | 174 | 15 | 46 | 322 | 199 | 478 | 4.24e-18 | 85.5 |
| MS.gene50073.t1 | MTR_3g107810 | 30.802 | 237 | 145 | 9 | 44 | 270 | 249 | 476 | 6.43e-16 | 79.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 91 sgRNAs with CRISPR-Local
Find 84 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGTTCAAACTCGTCATTAAT+TGG | 0.247277 | 4.2:+37053780 | None:intergenic |
| ATACCTTGTCGCACTTGGTC+TGG | 0.282329 | 4.2:+37053758 | None:intergenic |
| ATACTTTGTAGCACTTGGTC+TGG | 0.301950 | 4.2:+37053908 | None:intergenic |
| AGACCCACAATTTCAGCTTA+TGG | 0.346620 | 4.2:-37054440 | MS.gene50073:CDS |
| ATACCAAGTGTTACAAAGTA+TGG | 0.347597 | 4.2:-37054056 | MS.gene50073:CDS |
| AGAAGCCCTTGAATTCCTTC+TGG | 0.355426 | 4.2:+37054602 | None:intergenic |
| GGCAAGTTGTTCTTGTGCCT+TGG | 0.361735 | 4.2:+37054544 | None:intergenic |
| GTTACAAAAGCGAGAAGTTA+TGG | 0.369310 | 4.2:-37054331 | MS.gene50073:CDS |
| TACCTTGTCGCACTTGGTCT+GGG | 0.372376 | 4.2:+37053759 | None:intergenic |
| TGATGACAAGATTAATATAA+AGG | 0.378507 | 4.2:-37054417 | MS.gene50073:CDS |
| ATACCTTGTAACACTTGGTC+TGG | 0.379154 | 4.2:+37054133 | None:intergenic |
| ATACCTTGTAACACTTGGTC+TGG | 0.379154 | 4.2:+37054208 | None:intergenic |
| ATAACTTGTAACACTTGGTA+TGG | 0.386882 | 4.2:+37053983 | None:intergenic |
| ATACCAAGTGTTACAAGTTA+TGG | 0.392905 | 4.2:-37053981 | MS.gene50073:CDS |
| ATACTTTGTAACACTTGGTA+TGG | 0.405216 | 4.2:+37054058 | None:intergenic |
| ATAACTTGTAACACTTGGTA+TGG | 0.408404 | 4.2:+37053833 | None:intergenic |
| ATATTTAGTGTGTTTGTTGC+GGG | 0.414691 | 4.2:+37054500 | None:intergenic |
| TCATTATACTTGGTGGCACT+TGG | 0.424744 | 4.2:+37053603 | None:intergenic |
| TACTTGGTGGCACTTGGCCT+AGG | 0.430240 | 4.2:+37053609 | None:intergenic |
| ATACCAAGTGTTACAAGTTA+TGG | 0.431717 | 4.2:-37053831 | MS.gene50073:CDS |
| TACTTTGTAGCACTTGGTCT+GGG | 0.436190 | 4.2:+37053909 | None:intergenic |
| ATGCTCATCACACTTACCTT+TGG | 0.436642 | 4.2:+37054523 | None:intergenic |
| CCATCATACTTTGTAACACT+TGG | 0.443820 | 4.2:+37053678 | None:intergenic |
| CTGCCATACTTTGTAACACT+TGG | 0.446156 | 4.2:+37054053 | None:intergenic |
| AGGTTCAAACTCGTCGTTCA+CGG | 0.447948 | 4.2:+37053629 | None:intergenic |
| CCATCATACTTTGTAGCACT+TGG | 0.452826 | 4.2:+37053903 | None:intergenic |
| GGTTCAAACTCGTCATTAAC+CGG | 0.460302 | 4.2:+37053930 | None:intergenic |
| CCGTCATACTTTGTAGCACT+TGG | 0.470820 | 4.2:+37054284 | None:intergenic |
| GGTTCAAACTCGTCATTCCT+TGG | 0.473350 | 4.2:+37054230 | None:intergenic |
| CCATCATACCTTGTGACACT+TGG | 0.480501 | 4.2:+37054359 | None:intergenic |
| TGTGCCTTGGAGTTCTTCAA+AGG | 0.482951 | 4.2:+37054557 | None:intergenic |
| TACCTTGTGACACTTGGCCT+TGG | 0.486639 | 4.2:+37054365 | None:intergenic |
| TTACAAAAGCGAGAAGTTAT+GGG | 0.490342 | 4.2:-37054330 | MS.gene50073:CDS |
| GGTTCAAACTCGTCGTTCAC+GGG | 0.491502 | 4.2:+37053630 | None:intergenic |
| TATTTAGTCATTATACTTGG+TGG | 0.492764 | 4.2:+37053596 | None:intergenic |
| TAAGCTGAAATTGTGGGTCT+TGG | 0.493615 | 4.2:+37054443 | None:intergenic |
| AACCCAGACCAAGTGTTACA+AGG | 0.496658 | 4.2:-37054136 | MS.gene50073:CDS |
| AACCCAGACCAAGTGTTACA+AGG | 0.496658 | 4.2:-37054211 | MS.gene50073:CDS |
| GAGATGCCAGAAGGAATTCA+AGG | 0.507467 | 4.2:-37054608 | MS.gene50073:CDS |
| TACCTTGTAACACTTGGTCT+GGG | 0.512094 | 4.2:+37054134 | None:intergenic |
| TACCTTGTAACACTTGGTCT+GGG | 0.512094 | 4.2:+37054209 | None:intergenic |
| GGTTCAAACCCGTCGTTCAT+CGG | 0.512726 | 4.2:+37053705 | None:intergenic |
| CCGTCATACCTTGTCGCACT+TGG | 0.513672 | 4.2:+37053753 | None:intergenic |
| TGAAACTACCGATGAACGAC+GGG | 0.514049 | 4.2:-37053713 | MS.gene50073:CDS |
| CCAAGTGTCACAAGGTATGA+TGG | 0.514391 | 4.2:-37054359 | MS.gene50073:CDS |
| CTTCCATAACTTGTAACACT+TGG | 0.515249 | 4.2:+37053978 | None:intergenic |
| GTTATAAGAGTATAAAACTA+CGG | 0.524735 | 4.2:-37054175 | MS.gene50073:CDS |
| GATATTTAGTGTGTTTGTTG+CGG | 0.527545 | 4.2:+37054499 | None:intergenic |
| TACTTTGTAGCACTTGGCCT+AGG | 0.529190 | 4.2:+37054290 | None:intergenic |
| TCACCATAAGCTGAAATTGT+GGG | 0.533189 | 4.2:+37054437 | None:intergenic |
| TTATAAGAGTATAAAACTAC+GGG | 0.540806 | 4.2:-37054174 | MS.gene50073:CDS |
| CCGTCATACCTTGTAACACT+TGG | 0.548269 | 4.2:+37054203 | None:intergenic |
| TACTTTGTAACACTTGGTAT+GGG | 0.551408 | 4.2:+37054059 | None:intergenic |
| AGTACAAAACTATCGGTGAA+TGG | 0.553539 | 4.2:-37054017 | MS.gene50073:CDS |
| TTGCCATAACTTGTAACACT+TGG | 0.554234 | 4.2:+37053828 | None:intergenic |
| GTTACAAGTTATGGAAGTGA+TGG | 0.555552 | 4.2:-37053972 | MS.gene50073:CDS |
| CCGTCATACCTTGTAACACT+TGG | 0.556480 | 4.2:+37054128 | None:intergenic |
| GTTACAAAGTATGGCAGTGA+TGG | 0.559355 | 4.2:-37054047 | MS.gene50073:CDS |
| CCAAGTGTTACAAAGTATGA+TGG | 0.562453 | 4.2:-37053678 | MS.gene50073:CDS |
| TAACTTGTAACACTTGGTAT+GGG | 0.572877 | 4.2:+37053834 | None:intergenic |
| CTATAAGAGTATTAAACTAC+CGG | 0.574017 | 4.2:-37053949 | MS.gene50073:CDS |
| TACTTTGTAACACTTGGTCT+AGG | 0.577744 | 4.2:+37053684 | None:intergenic |
| CCAAGTGCTACAAAGTATGA+TGG | 0.583943 | 4.2:-37053903 | MS.gene50073:CDS |
| ATGAAACTACCGATGAACGA+CGG | 0.584571 | 4.2:-37053714 | MS.gene50073:CDS |
| TAACTTGTAACACTTGGTAT+GGG | 0.586261 | 4.2:+37053984 | None:intergenic |
| AAGTATGACGGCGATGGTGA+AGG | 0.589181 | 4.2:-37054272 | MS.gene50073:CDS |
| ATCACCATAAGCTGAAATTG+TGG | 0.595027 | 4.2:+37054436 | None:intergenic |
| GTTACAAGGTATGACGGTGA+TGG | 0.613311 | 4.2:-37054197 | MS.gene50073:CDS |
| AAAGATGAAGAGATGCCAGA+AGG | 0.615434 | 4.2:-37054617 | MS.gene50073:CDS |
| TTATAAGAGTACAAAACTAT+CGG | 0.615435 | 4.2:-37054024 | MS.gene50073:CDS |
| TTATCAGAGTACAAAACTAT+CGG | 0.620899 | 4.2:-37054099 | MS.gene50073:CDS |
| AGCCAAGGCCAAGTGTCACA+AGG | 0.624209 | 4.2:-37054367 | MS.gene50073:CDS |
| TTATCAGAGTACAAAACTAT+CGG | 0.624493 | 4.2:-37053874 | MS.gene50073:CDS |
| GCTACAAAGTATGACGGCGA+TGG | 0.626214 | 4.2:-37054278 | MS.gene50073:CDS |
| CCAAGTGCTACAAAGTATGA+CGG | 0.634290 | 4.2:-37054284 | MS.gene50073:CDS |
| CCAAGTGCGACAAGGTATGA+CGG | 0.634896 | 4.2:-37053753 | MS.gene50073:CDS |
| CCAAGTGTTACAAGGTATGA+CGG | 0.636357 | 4.2:-37054128 | MS.gene50073:CDS |
| CCAAGTGTTACAAGGTATGA+CGG | 0.636357 | 4.2:-37054203 | MS.gene50073:CDS |
| TGTCCTCTGAGTTTGAACCT+AGG | 0.640039 | 4.2:-37054307 | MS.gene50073:CDS |
| AGATGCCAGAAGGAATTCAA+GGG | 0.644893 | 4.2:-37054607 | MS.gene50073:CDS |
| AACCCAGACCAAGTGCGACA+AGG | 0.648941 | 4.2:-37053761 | MS.gene50073:CDS |
| ATATGACTATTAAACTACCA+AGG | 0.661952 | 4.2:-37054247 | MS.gene50073:CDS |
| GCTACAAAGTATGATGGTGA+TGG | 0.662559 | 4.2:-37053897 | MS.gene50073:CDS |
| GTCACAAGGTATGATGGTGA+TGG | 0.664386 | 4.2:-37054353 | MS.gene50073:CDS |
| GCACAAGAACAACTTGCCAA+AGG | 0.672197 | 4.2:-37054539 | MS.gene50073:CDS |
| GTTACAAGTTATGGCAACGA+TGG | 0.674231 | 4.2:-37053822 | MS.gene50073:CDS |
| CGAACCTTTGAAGAACTCCA+AGG | 0.682187 | 4.2:-37054561 | MS.gene50073:CDS |
| TGGCCTAGGTTCAAACTCAG+AGG | 0.693294 | 4.2:+37054304 | None:intergenic |
| TGAACGACGAGTTTGAACCT+AGG | 0.706800 | 4.2:-37053626 | MS.gene50073:CDS |
| ATAAGAGTATAAAACTACGG+GGG | 0.742499 | 4.2:-37054172 | MS.gene50073:CDS |
| TATAAGAGTATAAAACTACG+GGG | 0.765134 | 4.2:-37054173 | MS.gene50073:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ACTAAATATCATAGAAAAAA+AGG | - | chr4.2:37053733-37053752 | MS.gene50073:CDS | 15.0% |
| !! | AAATATCATAGAAAAAAAGG+TGG | - | chr4.2:37053736-37053755 | MS.gene50073:CDS | 20.0% |
| !! | TGATGACAAGATTAATATAA+AGG | - | chr4.2:37053802-37053821 | MS.gene50073:CDS | 20.0% |
| !!! | GTTATAAGAGTATAAAACTA+CGG | - | chr4.2:37054044-37054063 | MS.gene50073:CDS | 20.0% |
| !!! | TTATAAGAGTACAAAACTAT+CGG | - | chr4.2:37054195-37054214 | MS.gene50073:CDS | 20.0% |
| !!! | TTATAAGAGTATAAAACTAC+GGG | - | chr4.2:37054045-37054064 | MS.gene50073:CDS | 20.0% |
| ! | ATATGACTATTAAACTACCA+AGG | - | chr4.2:37053972-37053991 | MS.gene50073:CDS | 25.0% |
| ! | TTATCAGAGTACAAAACTAT+CGG | - | chr4.2:37054120-37054139 | MS.gene50073:CDS | 25.0% |
| !! | ATATAAAAGATTTTGAGCCA+AGG | - | chr4.2:37053837-37053856 | MS.gene50073:CDS | 25.0% |
| !! | TATAAGAGTATAAAACTACG+GGG | - | chr4.2:37054046-37054065 | MS.gene50073:CDS | 25.0% |
| !!! | CTATAAGAGTATTAAACTAC+CGG | - | chr4.2:37054270-37054289 | MS.gene50073:CDS | 25.0% |
| ATACCAAGTGTTACAAAGTA+TGG | - | chr4.2:37054163-37054182 | MS.gene50073:CDS | 30.0% | |
| ATACCAAGTGTTACAAGTTA+TGG | - | chr4.2:37054238-37054257 | MS.gene50073:CDS | 30.0% | |
| ATACTTTGTAACACTTGGTA+TGG | + | chr4.2:37054164-37054183 | None:intergenic | 30.0% | |
| TACTTTGTAACACTTGGTAT+GGG | + | chr4.2:37054163-37054182 | None:intergenic | 30.0% | |
| TTACAAAAGCGAGAAGTTAT+GGG | - | chr4.2:37053889-37053908 | MS.gene50073:CDS | 30.0% | |
| ! | ATAACTTGTAACACTTGGTA+TGG | + | chr4.2:37054239-37054258 | None:intergenic | 30.0% |
| ! | ATAAGAGTATAAAACTACGG+GGG | - | chr4.2:37054047-37054066 | MS.gene50073:CDS | 30.0% |
| ! | ATATTTAGTGTGTTTGTTGC+GGG | + | chr4.2:37053722-37053741 | None:intergenic | 30.0% |
| ! | GATATTTAGTGTGTTTGTTG+CGG | + | chr4.2:37053723-37053742 | None:intergenic | 30.0% |
| ! | TAACTTGTAACACTTGGTAT+GGG | + | chr4.2:37054238-37054257 | None:intergenic | 30.0% |
| AGTACAAAACTATCGGTGAA+TGG | - | chr4.2:37054127-37054146 | MS.gene50073:CDS | 35.0% | |
| ATCACCATAAGCTGAAATTG+TGG | + | chr4.2:37053786-37053805 | None:intergenic | 35.0% | |
| CCAAGTGTTACAAAGTATGA+TGG | - | chr4.2:37054541-37054560 | MS.gene50073:CDS | 35.0% | |
| CCATCATACTTTGTAACACT+TGG | + | chr4.2:37054544-37054563 | None:intergenic | 35.0% | |
| GGTTCAAACTCGTCATTAAT+TGG | + | chr4.2:37054442-37054461 | None:intergenic | 35.0% | |
| GTTACAAAAGCGAGAAGTTA+TGG | - | chr4.2:37053888-37053907 | MS.gene50073:CDS | 35.0% | |
| GTTACAAGTTATGGAAGTGA+TGG | - | chr4.2:37054247-37054266 | MS.gene50073:CDS | 35.0% | |
| TACTTTGTAACACTTGGTCT+AGG | + | chr4.2:37054538-37054557 | None:intergenic | 35.0% | |
| TCACCATAAGCTGAAATTGT+GGG | + | chr4.2:37053785-37053804 | None:intergenic | 35.0% | |
| ! | CTTCCATAACTTGTAACACT+TGG | + | chr4.2:37054244-37054263 | None:intergenic | 35.0% |
| ! | TTGCCATAACTTGTAACACT+TGG | + | chr4.2:37054394-37054413 | None:intergenic | 35.0% |
| AAAGATGAAGAGATGCCAGA+AGG | - | chr4.2:37053602-37053621 | MS.gene50073:CDS | 40.0% | |
| AGACCCACAATTTCAGCTTA+TGG | - | chr4.2:37053779-37053798 | MS.gene50073:CDS | 40.0% | |
| AGATGCCAGAAGGAATTCAA+GGG | - | chr4.2:37053612-37053631 | MS.gene50073:CDS | 40.0% | |
| ATACCTTGTAACACTTGGTC+TGG | + | chr4.2:37054014-37054033 | None:intergenic | 40.0% | |
| ATACTTTGTAGCACTTGGTC+TGG | + | chr4.2:37054314-37054333 | None:intergenic | 40.0% | |
| ATGAAACTACCGATGAACGA+CGG | - | chr4.2:37054505-37054524 | MS.gene50073:CDS | 40.0% | |
| ATGCTCATCACACTTACCTT+TGG | + | chr4.2:37053699-37053718 | None:intergenic | 40.0% | |
| CCAAGTGCTACAAAGTATGA+CGG | - | chr4.2:37053935-37053954 | MS.gene50073:CDS | 40.0% | |
| CCAAGTGCTACAAAGTATGA+TGG | - | chr4.2:37053935-37053954 | MS.gene50073:CDS | 40.0% | |
| CCAAGTGTTACAAGGTATGA+CGG | - | chr4.2:37054016-37054035 | MS.gene50073:CDS | 40.0% | |
| CCATCATACTTTGTAGCACT+TGG | + | chr4.2:37054319-37054338 | None:intergenic | 40.0% | |
| CTGCCATACTTTGTAACACT+TGG | + | chr4.2:37054169-37054188 | None:intergenic | 40.0% | |
| GGTTCAAACTCGTCATTAAC+CGG | + | chr4.2:37054292-37054311 | None:intergenic | 40.0% | |
| GTTACAAAGTATGGCAGTGA+TGG | - | chr4.2:37054172-37054191 | MS.gene50073:CDS | 40.0% | |
| GTTACAAGTTATGGCAACGA+TGG | - | chr4.2:37054397-37054416 | MS.gene50073:CDS | 40.0% | |
| TAAGCTGAAATTGTGGGTCT+TGG | + | chr4.2:37053779-37053798 | None:intergenic | 40.0% | |
| TACCTTGTAACACTTGGTCT+GGG | + | chr4.2:37054013-37054032 | None:intergenic | 40.0% | |
| TACTTTGTAGCACTTGGTCT+GGG | + | chr4.2:37054313-37054332 | None:intergenic | 40.0% | |
| ! | GCTACAAAGTATGATGGTGA+TGG | - | chr4.2:37054322-37054341 | MS.gene50073:CDS | 40.0% |
| ! | TCATTATACTTGGTGGCACT+TGG | + | chr4.2:37054619-37054638 | None:intergenic | 40.0% |
| AACCCAGACCAAGTGTTACA+AGG | - | chr4.2:37054008-37054027 | MS.gene50073:CDS | 45.0% | |
| AGAAGCCCTTGAATTCCTTC+TGG | + | chr4.2:37053620-37053639 | None:intergenic | 45.0% | |
| AGGTTCAAACTCGTCGTTCA+CGG | + | chr4.2:37054593-37054612 | None:intergenic | 45.0% | |
| CCAAGTGTCACAAGGTATGA+TGG | - | chr4.2:37053860-37053879 | MS.gene50073:CDS | 45.0% | |
| CCATCATACCTTGTGACACT+TGG | + | chr4.2:37053863-37053882 | None:intergenic | 45.0% | |
| CCGTCATACCTTGTAACACT+TGG | + | chr4.2:37054019-37054038 | None:intergenic | 45.0% | |
| CCGTCATACTTTGTAGCACT+TGG | + | chr4.2:37053938-37053957 | None:intergenic | 45.0% | |
| GAGATGCCAGAAGGAATTCA+AGG | - | chr4.2:37053611-37053630 | MS.gene50073:CDS | 45.0% | |
| GCACAAGAACAACTTGCCAA+AGG | - | chr4.2:37053680-37053699 | MS.gene50073:CDS | 45.0% | |
| GGTTCAAACTCGTCATTCCT+TGG | + | chr4.2:37053992-37054011 | None:intergenic | 45.0% | |
| GTTACAAGGTATGACGGTGA+TGG | - | chr4.2:37054022-37054041 | MS.gene50073:CDS | 45.0% | |
| TACTTTGTAGCACTTGGCCT+AGG | + | chr4.2:37053932-37053951 | None:intergenic | 45.0% | |
| TGAAACTACCGATGAACGAC+GGG | - | chr4.2:37054506-37054525 | MS.gene50073:CDS | 45.0% | |
| TGAACGACGAGTTTGAACCT+AGG | - | chr4.2:37054593-37054612 | MS.gene50073:CDS | 45.0% | |
| TGTCCTCTGAGTTTGAACCT+AGG | - | chr4.2:37053912-37053931 | MS.gene50073:CDS | 45.0% | |
| TGTGCCTTGGAGTTCTTCAA+AGG | + | chr4.2:37053665-37053684 | None:intergenic | 45.0% | |
| ! | CGAACCTTTGAAGAACTCCA+AGG | - | chr4.2:37053658-37053677 | MS.gene50073:CDS | 45.0% |
| ! | GTCACAAGGTATGATGGTGA+TGG | - | chr4.2:37053866-37053885 | MS.gene50073:CDS | 45.0% |
| AAGTATGACGGCGATGGTGA+AGG | - | chr4.2:37053947-37053966 | MS.gene50073:CDS | 50.0% | |
| ATACCTTGTCGCACTTGGTC+TGG | + | chr4.2:37054464-37054483 | None:intergenic | 50.0% | |
| CCAAGTGCGACAAGGTATGA+CGG | - | chr4.2:37054466-37054485 | MS.gene50073:CDS | 50.0% | |
| GCTACAAAGTATGACGGCGA+TGG | - | chr4.2:37053941-37053960 | MS.gene50073:CDS | 50.0% | |
| GGCAAGTTGTTCTTGTGCCT+TGG | + | chr4.2:37053678-37053697 | None:intergenic | 50.0% | |
| GGTTCAAACCCGTCGTTCAT+CGG | + | chr4.2:37054517-37054536 | None:intergenic | 50.0% | |
| GGTTCAAACTCGTCGTTCAC+GGG | + | chr4.2:37054592-37054611 | None:intergenic | 50.0% | |
| TACCTTGTCGCACTTGGTCT+GGG | + | chr4.2:37054463-37054482 | None:intergenic | 50.0% | |
| TACCTTGTGACACTTGGCCT+TGG | + | chr4.2:37053857-37053876 | None:intergenic | 50.0% | |
| TGGCCTAGGTTCAAACTCAG+AGG | + | chr4.2:37053918-37053937 | None:intergenic | 50.0% | |
| AACCCAGACCAAGTGCGACA+AGG | - | chr4.2:37054458-37054477 | MS.gene50073:CDS | 55.0% | |
| AGCCAAGGCCAAGTGTCACA+AGG | - | chr4.2:37053852-37053871 | MS.gene50073:CDS | 55.0% | |
| CCGTCATACCTTGTCGCACT+TGG | + | chr4.2:37054469-37054488 | None:intergenic | 55.0% | |
| ! | TACTTGGTGGCACTTGGCCT+AGG | + | chr4.2:37054613-37054632 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.2 | gene | 37053599 | 37054642 | 37053599 | ID=MS.gene50073 |
| chr4.2 | mRNA | 37053599 | 37054642 | 37053599 | ID=MS.gene50073.t1;Parent=MS.gene50073 |
| chr4.2 | exon | 37053599 | 37054642 | 37053599 | ID=MS.gene50073.t1.exon1;Parent=MS.gene50073.t1 |
| chr4.2 | CDS | 37053599 | 37054642 | 37053599 | ID=cds.MS.gene50073.t1;Parent=MS.gene50073.t1 |
| Gene Sequence |
| Protein sequence |
