Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene53156.t1 | XP_003614006.1 | 95.4 | 131 | 4 | 1 | 1 | 131 | 1 | 129 | 8.90E-56 | 227.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene53156.t1 | Q9ZQ80 | 45.6 | 68 | 34 | 1 | 29 | 93 | 68 | 135 | 1.7e-07 | 58.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene53156.t1 | G7JXW3 | 95.4 | 131 | 4 | 1 | 1 | 131 | 1 | 129 | 6.4e-56 | 227.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049159 | MS.gene53156 | 0.8006 | 1.34E-48 | -1.69E-46 |
| MS.gene049404 | MS.gene53156 | 0.80673 | 7.14E-50 | -1.69E-46 |
| MS.gene049435 | MS.gene53156 | 0.820222 | 7.69E-53 | -1.69E-46 |
| MS.gene050442 | MS.gene53156 | 0.825723 | 4.01E-54 | -1.69E-46 |
| MS.gene050605 | MS.gene53156 | 0.801866 | 7.36E-49 | -1.69E-46 |
| MS.gene050680 | MS.gene53156 | 0.880709 | 4.39E-70 | -1.69E-46 |
| MS.gene050750 | MS.gene53156 | 0.856078 | 4.10E-62 | -1.69E-46 |
| MS.gene050953 | MS.gene53156 | 0.843514 | 1.34E-58 | -1.69E-46 |
| MS.gene051198 | MS.gene53156 | 0.826067 | 3.32E-54 | -1.69E-46 |
| MS.gene051368 | MS.gene53156 | 0.824419 | 8.15E-54 | -1.69E-46 |
| MS.gene051800 | MS.gene53156 | 0.807961 | 3.91E-50 | -1.69E-46 |
| MS.gene051926 | MS.gene53156 | -0.80314 | 4.02E-49 | -1.69E-46 |
| MS.gene052056 | MS.gene53156 | -0.840564 | 8.06E-58 | -1.69E-46 |
| MS.gene052190 | MS.gene53156 | 0.807886 | 4.06E-50 | -1.69E-46 |
| MS.gene052333 | MS.gene53156 | 0.856701 | 2.69E-62 | -1.69E-46 |
| MS.gene052677 | MS.gene53156 | 0.806173 | 9.35E-50 | -1.69E-46 |
| MS.gene053166 | MS.gene53156 | 0.872115 | 4.07E-67 | -1.69E-46 |
| MS.gene053201 | MS.gene53156 | 0.830438 | 2.94E-55 | -1.69E-46 |
| MS.gene053494 | MS.gene53156 | 0.810008 | 1.43E-50 | -1.69E-46 |
| MS.gene05415 | MS.gene53156 | 0.812337 | 4.46E-51 | -1.69E-46 |
| MS.gene054291 | MS.gene53156 | -0.8368 | 7.57E-57 | -1.69E-46 |
| MS.gene054405 | MS.gene53156 | 0.839058 | 1.99E-57 | -1.69E-46 |
| MS.gene054468 | MS.gene53156 | 0.807751 | 4.34E-50 | -1.69E-46 |
| MS.gene054559 | MS.gene53156 | 0.856259 | 3.63E-62 | -1.69E-46 |
| MS.gene05510 | MS.gene53156 | 0.833664 | 4.68E-56 | -1.69E-46 |
| MS.gene055228 | MS.gene53156 | 0.813953 | 1.97E-51 | -1.69E-46 |
| MS.gene055356 | MS.gene53156 | 0.850461 | 1.67E-60 | -1.69E-46 |
| MS.gene055357 | MS.gene53156 | 0.828262 | 9.91E-55 | -1.69E-46 |
| MS.gene055358 | MS.gene53156 | 0.85419 | 1.45E-61 | -1.69E-46 |
| MS.gene055367 | MS.gene53156 | 0.832075 | 1.16E-55 | -1.69E-46 |
| MS.gene055701 | MS.gene53156 | 0.860877 | 1.52E-63 | -1.69E-46 |
| MS.gene055926 | MS.gene53156 | 0.823191 | 1.58E-53 | -1.69E-46 |
| MS.gene056506 | MS.gene53156 | 0.807896 | 4.04E-50 | -1.69E-46 |
| MS.gene056873 | MS.gene53156 | 0.805251 | 1.46E-49 | -1.69E-46 |
| MS.gene057021 | MS.gene53156 | 0.819774 | 9.74E-53 | -1.69E-46 |
| MS.gene057060 | MS.gene53156 | 0.803395 | 3.56E-49 | -1.69E-46 |
| MS.gene057156 | MS.gene53156 | -0.814403 | 1.57E-51 | -1.69E-46 |
| MS.gene057200 | MS.gene53156 | 0.802651 | 5.07E-49 | -1.69E-46 |
| MS.gene059128 | MS.gene53156 | 0.837579 | 4.78E-57 | -1.69E-46 |
| MS.gene059160 | MS.gene53156 | 0.812178 | 4.83E-51 | -1.69E-46 |
| MS.gene059161 | MS.gene53156 | 0.852698 | 3.89E-61 | -1.69E-46 |
| MS.gene059162 | MS.gene53156 | 0.814232 | 1.71E-51 | -1.69E-46 |
| MS.gene059584 | MS.gene53156 | 0.804657 | 1.94E-49 | -1.69E-46 |
| MS.gene059607 | MS.gene53156 | 0.838399 | 2.94E-57 | -1.69E-46 |
| MS.gene059609 | MS.gene53156 | 0.83325 | 5.94E-56 | -1.69E-46 |
| MS.gene059849 | MS.gene53156 | -0.803473 | 3.43E-49 | -1.69E-46 |
| MS.gene060011 | MS.gene53156 | 0.840762 | 7.15E-58 | -1.69E-46 |
| MS.gene060137 | MS.gene53156 | -0.823918 | 1.07E-53 | -1.69E-46 |
| MS.gene060322 | MS.gene53156 | 0.838757 | 2.38E-57 | -1.69E-46 |
| MS.gene06052 | MS.gene53156 | 0.803715 | 3.05E-49 | -1.69E-46 |
| MS.gene060802 | MS.gene53156 | 0.825088 | 5.67E-54 | -1.69E-46 |
| MS.gene060803 | MS.gene53156 | 0.80383 | 2.89E-49 | -1.69E-46 |
| MS.gene061114 | MS.gene53156 | -0.857189 | 1.93E-62 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene53156.t1 | MTR_5g043660 | 96.337 | 273 | 8 | 1 | 1 | 273 | 1 | 271 | 1.27e-169 | 469 |
| MS.gene53156.t1 | MTR_4g082830 | 37.500 | 120 | 54 | 6 | 1 | 107 | 1 | 112 | 4.52e-13 | 65.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 101 sgRNAs with CRISPR-Local
Find 122 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGTCGTTCCGGTGGTGGTTA+TGG | 0.248929 | 5.4:+32873678 | MS.gene53156:CDS |
| GGTTATTCTGGTGGTGGGTT+TGG | 0.263234 | 5.4:+32873486 | MS.gene53156:CDS |
| TGGATATGGTTATGTTAATT+AGG | 0.263569 | 5.4:+32873980 | MS.gene53156:CDS |
| GGTGGAAATGGTGGTTATTA+TGG | 0.263846 | 5.4:+32873507 | MS.gene53156:CDS |
| TGTTCACCTTGCCAGGTTCA+TGG | 0.278749 | 5.4:-32873314 | None:intergenic |
| GACCGCTATGAGAGTGGATA+TGG | 0.279340 | 5.4:+32873789 | MS.gene53156:CDS |
| GGAGCTACTGGTGGTGGTTA+TGG | 0.301488 | 5.4:+32873648 | MS.gene53156:CDS |
| ACCAGTTGCTCCTAAAATAT+TGG | 0.302857 | 5.4:-32873361 | None:intergenic |
| TATGGTAATGAGCAAAGTTT+TGG | 0.303327 | 5.4:+32873918 | MS.gene53156:CDS |
| TGGTGGTTATTATGGAAATA+AGG | 0.304690 | 5.4:+32873515 | MS.gene53156:CDS |
| GGTGGTGGGTTTGGTGGAAA+TGG | 0.307504 | 5.4:+32873495 | MS.gene53156:CDS |
| GGTTATGGTGGTGGACGTTC+TGG | 0.323254 | 5.4:+32873624 | MS.gene53156:CDS |
| TATGGATATGGAGGGCGTTC+TGG | 0.326809 | 5.4:+32873891 | MS.gene53156:CDS |
| CGTTCAAGTATTGGTGGATA+TGG | 0.328623 | 5.4:+32873843 | MS.gene53156:CDS |
| TTGGCCTTGTTCACCTTGCC+AGG | 0.330282 | 5.4:-32873321 | None:intergenic |
| AAGTACAACAACAATTATTA+TGG | 0.331002 | 5.4:+32873192 | MS.gene53156:CDS |
| GGGTATGGAGGTGGACGTTT+TGG | 0.332134 | 5.4:+32873717 | MS.gene53156:CDS |
| TGGTGTTGTTGATGAGAATA+AGG | 0.333686 | 5.4:+32873380 | MS.gene53156:CDS |
| TATTCTGGTGGTGGGTTTGG+TGG | 0.342508 | 5.4:+32873489 | MS.gene53156:CDS |
| AGTCGCTTCAGTGGTGGATA+TGG | 0.366456 | 5.4:+32873966 | MS.gene53156:CDS |
| GCTCCGTACTCGAATGGTTC+TGG | 0.368973 | 5.4:-32873242 | None:intergenic |
| GTCGTTCCGGTGGTGGTTAT+GGG | 0.369280 | 5.4:+32873679 | MS.gene53156:CDS |
| TCTAGTGGTGGCTATGGATA+TGG | 0.370645 | 5.4:+32873879 | MS.gene53156:CDS |
| GGAGGGCGTTCTGGTGGTTA+TGG | 0.376684 | 5.4:+32873900 | MS.gene53156:CDS |
| GAGAGTGGTTATGGACGTTT+TGG | 0.379000 | 5.4:+32873552 | MS.gene53156:CDS |
| GAGAGTGGATATGGGCGTTC+TGG | 0.380092 | 5.4:+32873798 | MS.gene53156:CDS |
| GATCGCTCTGGTGGTGGTTA+TGG | 0.380816 | 5.4:+32873759 | MS.gene53156:CDS |
| AAGTATCATGAGAGTGGTTA+TGG | 0.384520 | 5.4:+32873543 | MS.gene53156:CDS |
| GGGCGTTCTGGTAGTGGATA+TGG | 0.400902 | 5.4:+32873810 | MS.gene53156:CDS |
| AACAATTATTATGGTGGTCA+TGG | 0.408941 | 5.4:+32873201 | MS.gene53156:CDS |
| GGACGTTCTGGTGGAGCTAC+TGG | 0.425973 | 5.4:+32873636 | MS.gene53156:CDS |
| TATGGTTCTAATGGTCGTTC+CGG | 0.426041 | 5.4:+32873666 | MS.gene53156:CDS |
| GCCAGGTTCATGGTTGTAAA+CGG | 0.432374 | 5.4:-32873304 | None:intergenic |
| AATAATAACGAGAGTGGGTA+TGG | 0.434805 | 5.4:+32873702 | MS.gene53156:CDS |
| GGTGGGTTTGGTGGAAATGG+TGG | 0.442531 | 5.4:+32873498 | MS.gene53156:CDS |
| GGATATGGGCGTTCTGGTAG+TGG | 0.454988 | 5.4:+32873804 | MS.gene53156:CDS |
| GGTGGTGGTTATGGTTCTAA+TGG | 0.459862 | 5.4:+32873657 | MS.gene53156:CDS |
| GGTACTACTGGTGGTGGTTA+CGG | 0.459915 | 5.4:+32873579 | MS.gene53156:CDS |
| TCTAATGGTCGTTCCGGTGG+TGG | 0.461776 | 5.4:+32873672 | MS.gene53156:CDS |
| AACCGATCTAGTGGTGGTTA+TGG | 0.472078 | 5.4:+32873609 | MS.gene53156:CDS |
| TCCACTCTCATAGCGGTCAT+TGG | 0.474660 | 5.4:-32873784 | None:intergenic |
| GGTGGTGGTACTACTGGTGG+TGG | 0.493818 | 5.4:+32873573 | MS.gene53156:CDS |
| AACCGTTCTAGTGGTGGCTA+TGG | 0.494450 | 5.4:+32873873 | MS.gene53156:CDS |
| GGAAGCGGCAACCGCAACCT+TGG | 0.496409 | 5.4:-32873340 | None:intergenic |
| GGTGAACAAGGCCAAGGTTG+CGG | 0.521243 | 5.4:+32873329 | MS.gene53156:CDS |
| TGCTCCTAAAATATTGGAAG+CGG | 0.533305 | 5.4:-32873355 | None:intergenic |
| AACGAGAGTGGGTATGGAGG+TGG | 0.536019 | 5.4:+32873708 | MS.gene53156:CDS |
| TCCGATGATCGCTCTGGTGG+TGG | 0.538658 | 5.4:+32873753 | MS.gene53156:CDS |
| TCTTCCTCCGGTGTTCCTAC+CGG | 0.539541 | 5.4:+32873453 | MS.gene53156:CDS |
| TCCGTTTACAACCATGAACC+TGG | 0.545196 | 5.4:+32873303 | MS.gene53156:CDS |
| AAAATGGTTATTCTGGTGGT+GGG | 0.545962 | 5.4:+32873481 | MS.gene53156:CDS |
| TCTAGTGGTGGTTATGGTGG+TGG | 0.550300 | 5.4:+32873615 | MS.gene53156:CDS |
| ACCGCTATGAGAGTGGATAT+GGG | 0.552395 | 5.4:+32873790 | MS.gene53156:CDS |
| TATGGGAATAATAACGAGAG+TGG | 0.553125 | 5.4:+32873696 | MS.gene53156:CDS |
| GATGGAGGACGTTCAAGTAT+TGG | 0.558070 | 5.4:+32873834 | MS.gene53156:CDS |
| AGTCAACATGACTCTTCCTC+CGG | 0.559101 | 5.4:+32873441 | MS.gene53156:CDS |
| GATAATAAGTATCATGAGAG+TGG | 0.561322 | 5.4:+32873537 | MS.gene53156:CDS |
| CGTGATAGTCGCTTCAGTGG+TGG | 0.564497 | 5.4:+32873960 | MS.gene53156:CDS |
| CACCATAACCACCACTAGAT+CGG | 0.564637 | 5.4:-32873611 | None:intergenic |
| ACAATTATTATGGTGGTCAT+GGG | 0.566049 | 5.4:+32873202 | MS.gene53156:CDS |
| CGGCCAGAACCATTCGAGTA+CGG | 0.567991 | 5.4:+32873239 | MS.gene53156:CDS |
| ATTATTCCCATAACCACCAC+CGG | 0.569833 | 5.4:-32873685 | None:intergenic |
| TTTGGAGGGTATGGTAGGGA+TGG | 0.569920 | 5.4:+32873936 | MS.gene53156:CDS |
| AGTGGTGGCTATGGATATGG+AGG | 0.573815 | 5.4:+32873882 | MS.gene53156:CDS |
| AATAACGAGAGTGGGTATGG+AGG | 0.576193 | 5.4:+32873705 | MS.gene53156:CDS |
| GGTTCTAATGGTCGTTCCGG+TGG | 0.578894 | 5.4:+32873669 | MS.gene53156:CDS |
| GGATATGGAGGGCGTTCTGG+TGG | 0.586766 | 5.4:+32873894 | MS.gene53156:CDS |
| TCTGGTGGAGCTACTGGTGG+TGG | 0.587836 | 5.4:+32873642 | MS.gene53156:CDS |
| TATGGTTCCGATGATCGCTC+TGG | 0.588825 | 5.4:+32873747 | MS.gene53156:CDS |
| TGAACCTGGCAAGGTGAACA+AGG | 0.589426 | 5.4:+32873317 | MS.gene53156:CDS |
| GGAGAAGAAAACCGTTCTAG+TGG | 0.590432 | 5.4:+32873864 | MS.gene53156:CDS |
| TCTGGTAGTGGATATGGTGA+TGG | 0.595727 | 5.4:+32873816 | MS.gene53156:CDS |
| TATGGTGGTGGACGTTCTGG+TGG | 0.597520 | 5.4:+32873627 | MS.gene53156:CDS |
| ATGGGAATAATAACGAGAGT+GGG | 0.598404 | 5.4:+32873697 | MS.gene53156:CDS |
| GAAGAAAACCGTTCTAGTGG+TGG | 0.605340 | 5.4:+32873867 | MS.gene53156:CDS |
| CGATCTAGTGGTGGTTATGG+TGG | 0.605931 | 5.4:+32873612 | MS.gene53156:CDS |
| ACCACCACCAGAGCGATCAT+CGG | 0.613164 | 5.4:-32873754 | None:intergenic |
| GGAGGACGTTCAAGTATTGG+TGG | 0.614595 | 5.4:+32873837 | MS.gene53156:CDS |
| TGGCAAGGTGAACAAGGCCA+AGG | 0.617007 | 5.4:+32873323 | MS.gene53156:CDS |
| TTATTATGGTGGTCATGGGA+AGG | 0.617040 | 5.4:+32873206 | MS.gene53156:CDS |
| GGTCGTGATAGTCGCTTCAG+TGG | 0.617359 | 5.4:+32873957 | MS.gene53156:CDS |
| ATCCATAGCCACCACTAGAA+CGG | 0.618974 | 5.4:-32873875 | None:intergenic |
| GCCAATGACCGCTATGAGAG+TGG | 0.621681 | 5.4:+32873783 | MS.gene53156:CDS |
| GTTGATGAGAATAAGGGCGT+TGG | 0.622103 | 5.4:+32873387 | MS.gene53156:CDS |
| GGTGTTGTTGATGAGAATAA+GGG | 0.622853 | 5.4:+32873381 | MS.gene53156:CDS |
| TTACAACCATGAACCTGGCA+AGG | 0.628591 | 5.4:+32873308 | MS.gene53156:CDS |
| TTTGGTGGTGGTACTACTGG+TGG | 0.629136 | 5.4:+32873570 | MS.gene53156:CDS |
| ATGTATGTTGACAAAGCCGC+TGG | 0.630172 | 5.4:+32873411 | MS.gene53156:CDS |
| TACAACAACAATTATTATGG+TGG | 0.630764 | 5.4:+32873195 | MS.gene53156:CDS |
| GGTCTTGATAACCGATCTAG+TGG | 0.630982 | 5.4:+32873600 | MS.gene53156:CDS |
| CGTTCTGGTGGAGCTACTGG+TGG | 0.642243 | 5.4:+32873639 | MS.gene53156:CDS |
| CTTGATAACCGATCTAGTGG+TGG | 0.664610 | 5.4:+32873603 | MS.gene53156:CDS |
| CATGGGAAGGAACAACGTCA+CGG | 0.671295 | 5.4:+32873219 | MS.gene53156:CDS |
| ATGTTGACTTAGATAACCAG+CGG | 0.672962 | 5.4:-32873427 | None:intergenic |
| GGTAGTGGATATGGTGATGG+AGG | 0.676160 | 5.4:+32873819 | MS.gene53156:CDS |
| GTCAGACAAGACCTTTGCAG+AGG | 0.676460 | 5.4:-32873271 | None:intergenic |
| GGTTCCGATGATCGCTCTGG+TGG | 0.677788 | 5.4:+32873750 | MS.gene53156:CDS |
| TGCAAAGGTCTTGTCTGACG+CGG | 0.693156 | 5.4:+32873275 | MS.gene53156:CDS |
| GTGGTGGCTATGGATATGGA+GGG | 0.695224 | 5.4:+32873883 | MS.gene53156:CDS |
| TCGTCCGGTAGGAACACCGG+AGG | 0.697557 | 5.4:-32873457 | None:intergenic |
| GCCCATATCCACTCTCATAG+CGG | 0.698484 | 5.4:-32873791 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAGTACAACAACAATTATTA+TGG | + | chr5.4:32873192-32873211 | MS.gene53156:CDS | 20.0% |
| ! | TACAACAACAATTATTATGG+TGG | + | chr5.4:32873195-32873214 | MS.gene53156:CDS | 25.0% |
| AACAATTATTATGGTGGTCA+TGG | + | chr5.4:32873201-32873220 | MS.gene53156:CDS | 30.0% | |
| ACAATTATTATGGTGGTCAT+GGG | + | chr5.4:32873202-32873221 | MS.gene53156:CDS | 30.0% | |
| GATAATAAGTATCATGAGAG+TGG | + | chr5.4:32873537-32873556 | MS.gene53156:CDS | 30.0% | |
| TGGTGGTTATTATGGAAATA+AGG | + | chr5.4:32873515-32873534 | MS.gene53156:CDS | 30.0% | |
| !! | TATGGTAATGAGCAAAGTTT+TGG | + | chr5.4:32873918-32873937 | MS.gene53156:CDS | 30.0% |
| !!! | AGAATAACCATTTTTTCGTC+CGG | - | chr5.4:32873475-32873494 | None:intergenic | 30.0% |
| AAAAATGGTTATTCTGGTGG+TGG | + | chr5.4:32873480-32873499 | MS.gene53156:CDS | 35.0% | |
| AAAATGGTTATTCTGGTGGT+GGG | + | chr5.4:32873481-32873500 | MS.gene53156:CDS | 35.0% | |
| AAGTATCATGAGAGTGGTTA+TGG | + | chr5.4:32873543-32873562 | MS.gene53156:CDS | 35.0% | |
| AATAATAACGAGAGTGGGTA+TGG | + | chr5.4:32873702-32873721 | MS.gene53156:CDS | 35.0% | |
| ACCAGTTGCTCCTAAAATAT+TGG | - | chr5.4:32873364-32873383 | None:intergenic | 35.0% | |
| ATGGGAATAATAACGAGAGT+GGG | + | chr5.4:32873697-32873716 | MS.gene53156:CDS | 35.0% | |
| CGAAAAAATGGTTATTCTGG+TGG | + | chr5.4:32873477-32873496 | MS.gene53156:CDS | 35.0% | |
| GGACGAAAAAATGGTTATTC+TGG | + | chr5.4:32873474-32873493 | MS.gene53156:CDS | 35.0% | |
| TATGGGAATAATAACGAGAG+TGG | + | chr5.4:32873696-32873715 | MS.gene53156:CDS | 35.0% | |
| TGCTCCTAAAATATTGGAAG+CGG | - | chr5.4:32873358-32873377 | None:intergenic | 35.0% | |
| !! | ATGTTGACTTAGATAACCAG+CGG | - | chr5.4:32873430-32873449 | None:intergenic | 35.0% |
| !! | GGTGTTGTTGATGAGAATAA+GGG | + | chr5.4:32873381-32873400 | MS.gene53156:CDS | 35.0% |
| !! | TCCAATATTTTAGGAGCAAC+TGG | + | chr5.4:32873360-32873379 | MS.gene53156:CDS | 35.0% |
| !! | TGGTGTTGTTGATGAGAATA+AGG | + | chr5.4:32873380-32873399 | MS.gene53156:CDS | 35.0% |
| !!! | GTAATGAGCAAAGTTTTGGA+GGG | + | chr5.4:32873922-32873941 | MS.gene53156:CDS | 35.0% |
| AAAAAAGCTCCGTACTCGAA+TGG | - | chr5.4:32873251-32873270 | None:intergenic | 40.0% | |
| ATTATTCCCATAACCACCAC+CGG | - | chr5.4:32873688-32873707 | None:intergenic | 40.0% | |
| GGTGGAAATGGTGGTTATTA+TGG | + | chr5.4:32873507-32873526 | MS.gene53156:CDS | 40.0% | |
| TTATTATGGTGGTCATGGGA+AGG | + | chr5.4:32873206-32873225 | MS.gene53156:CDS | 40.0% | |
| !! | CGTTCAAGTATTGGTGGATA+TGG | + | chr5.4:32873843-32873862 | MS.gene53156:CDS | 40.0% |
| !! | GGTAATGAGCAAAGTTTTGG+AGG | + | chr5.4:32873921-32873940 | MS.gene53156:CDS | 40.0% |
| !! | GTTGCCGCTTCCAATATTTT+AGG | + | chr5.4:32873351-32873370 | MS.gene53156:CDS | 40.0% |
| !! | TATGGTTCTAATGGTCGTTC+CGG | + | chr5.4:32873666-32873685 | MS.gene53156:CDS | 40.0% |
| !!! | AAAGTTTTGGAGGGTATGGT+AGG | + | chr5.4:32873931-32873950 | MS.gene53156:CDS | 40.0% |
| !!! | AAGTTTTGGAGGGTATGGTA+GGG | + | chr5.4:32873932-32873951 | MS.gene53156:CDS | 40.0% |
| !!! | TAACCATTTTTTCGTCCGGT+AGG | - | chr5.4:32873471-32873490 | None:intergenic | 40.0% |
| AACCGATCTAGTGGTGGTTA+TGG | + | chr5.4:32873609-32873628 | MS.gene53156:CDS | 45.0% | |
| AATAACGAGAGTGGGTATGG+AGG | + | chr5.4:32873705-32873724 | MS.gene53156:CDS | 45.0% | |
| ACCGCTATGAGAGTGGATAT+GGG | + | chr5.4:32873790-32873809 | MS.gene53156:CDS | 45.0% | |
| AGTCAACATGACTCTTCCTC+CGG | + | chr5.4:32873441-32873460 | MS.gene53156:CDS | 45.0% | |
| ATCCATAGCCACCACTAGAA+CGG | - | chr5.4:32873878-32873897 | None:intergenic | 45.0% | |
| ATGTATGTTGACAAAGCCGC+TGG | + | chr5.4:32873411-32873430 | MS.gene53156:CDS | 45.0% | |
| CACCATAACCACCACTAGAT+CGG | - | chr5.4:32873614-32873633 | None:intergenic | 45.0% | |
| GAAGAAAACCGTTCTAGTGG+TGG | + | chr5.4:32873867-32873886 | MS.gene53156:CDS | 45.0% | |
| GATGGAGGACGTTCAAGTAT+TGG | + | chr5.4:32873834-32873853 | MS.gene53156:CDS | 45.0% | |
| GCCAGGTTCATGGTTGTAAA+CGG | - | chr5.4:32873307-32873326 | None:intergenic | 45.0% | |
| GGAGAAGAAAACCGTTCTAG+TGG | + | chr5.4:32873864-32873883 | MS.gene53156:CDS | 45.0% | |
| GTTCCTACCGGACGAAAAAA+TGG | + | chr5.4:32873465-32873484 | MS.gene53156:CDS | 45.0% | |
| TCCGTTTACAACCATGAACC+TGG | + | chr5.4:32873303-32873322 | MS.gene53156:CDS | 45.0% | |
| TCTAGTGGTGGCTATGGATA+TGG | + | chr5.4:32873879-32873898 | MS.gene53156:CDS | 45.0% | |
| TTACAACCATGAACCTGGCA+AGG | + | chr5.4:32873308-32873327 | MS.gene53156:CDS | 45.0% | |
| ! | AGTGGTTATGGACGTTTTGG+TGG | + | chr5.4:32873555-32873574 | MS.gene53156:CDS | 45.0% |
| ! | CTTGATAACCGATCTAGTGG+TGG | + | chr5.4:32873603-32873622 | MS.gene53156:CDS | 45.0% |
| ! | GAGAGTGGTTATGGACGTTT+TGG | + | chr5.4:32873552-32873571 | MS.gene53156:CDS | 45.0% |
| ! | GGTCTTGATAACCGATCTAG+TGG | + | chr5.4:32873600-32873619 | MS.gene53156:CDS | 45.0% |
| ! | GTTGATGAGAATAAGGGCGT+TGG | + | chr5.4:32873387-32873406 | MS.gene53156:CDS | 45.0% |
| !! | GGTGGTGGTTATGGTTCTAA+TGG | + | chr5.4:32873657-32873676 | MS.gene53156:CDS | 45.0% |
| !! | TCTGGTAGTGGATATGGTGA+TGG | + | chr5.4:32873816-32873835 | MS.gene53156:CDS | 45.0% |
| !!! | GAGCAAAGTTTTGGAGGGTA+TGG | + | chr5.4:32873927-32873946 | MS.gene53156:CDS | 45.0% |
| !!! | GGAGCTTTTTTCCTCTGCAA+AGG | + | chr5.4:32873260-32873279 | MS.gene53156:CDS | 45.0% |
| AACCGTTCTAGTGGTGGCTA+TGG | + | chr5.4:32873873-32873892 | MS.gene53156:CDS | 50.0% | |
| AGTGGTGGCTATGGATATGG+AGG | + | chr5.4:32873882-32873901 | MS.gene53156:CDS | 50.0% | |
| CATGGGAAGGAACAACGTCA+CGG | + | chr5.4:32873219-32873238 | MS.gene53156:CDS | 50.0% | |
| CGATCTAGTGGTGGTTATGG+TGG | + | chr5.4:32873612-32873631 | MS.gene53156:CDS | 50.0% | |
| GACCGCTATGAGAGTGGATA+TGG | + | chr5.4:32873789-32873808 | MS.gene53156:CDS | 50.0% | |
| GCCCATATCCACTCTCATAG+CGG | - | chr5.4:32873794-32873813 | None:intergenic | 50.0% | |
| GTCAGACAAGACCTTTGCAG+AGG | - | chr5.4:32873274-32873293 | None:intergenic | 50.0% | |
| GTGGTGGCTATGGATATGGA+GGG | + | chr5.4:32873883-32873902 | MS.gene53156:CDS | 50.0% | |
| TATGGTTCCGATGATCGCTC+TGG | + | chr5.4:32873747-32873766 | MS.gene53156:CDS | 50.0% | |
| TCCACTCTCATAGCGGTCAT+TGG | - | chr5.4:32873787-32873806 | None:intergenic | 50.0% | |
| TCTAGTGGTGGTTATGGTGG+TGG | + | chr5.4:32873615-32873634 | MS.gene53156:CDS | 50.0% | |
| TGAACCTGGCAAGGTGAACA+AGG | + | chr5.4:32873317-32873336 | MS.gene53156:CDS | 50.0% | |
| TGTTCACCTTGCCAGGTTCA+TGG | - | chr5.4:32873317-32873336 | None:intergenic | 50.0% | |
| ! | TATGGAGGTGGACGTTTTGG+TGG | + | chr5.4:32873720-32873739 | MS.gene53156:CDS | 50.0% |
| ! | TGCAAAGGTCTTGTCTGACG+CGG | + | chr5.4:32873275-32873294 | MS.gene53156:CDS | 50.0% |
| ! | TTTGGAGGGTATGGTAGGGA+TGG | + | chr5.4:32873936-32873955 | MS.gene53156:CDS | 50.0% |
| ! | TTTTCGTCCGGTAGGAACAC+CGG | - | chr5.4:32873463-32873482 | None:intergenic | 50.0% |
| !! | AGTCGCTTCAGTGGTGGATA+TGG | + | chr5.4:32873966-32873985 | MS.gene53156:CDS | 50.0% |
| !! | GGAGGACGTTCAAGTATTGG+TGG | + | chr5.4:32873837-32873856 | MS.gene53156:CDS | 50.0% |
| !! | GGTACTACTGGTGGTGGTTA+CGG | + | chr5.4:32873579-32873598 | MS.gene53156:CDS | 50.0% |
| !! | GGTAGTGGATATGGTGATGG+AGG | + | chr5.4:32873819-32873838 | MS.gene53156:CDS | 50.0% |
| !! | GGTTATGGACGTTTTGGTGG+TGG | + | chr5.4:32873558-32873577 | MS.gene53156:CDS | 50.0% |
| !! | GGTTATTCTGGTGGTGGGTT+TGG | + | chr5.4:32873486-32873505 | MS.gene53156:CDS | 50.0% |
| !! | TATGGATATGGAGGGCGTTC+TGG | + | chr5.4:32873891-32873910 | MS.gene53156:CDS | 50.0% |
| !! | TATTCTGGTGGTGGGTTTGG+TGG | + | chr5.4:32873489-32873508 | MS.gene53156:CDS | 50.0% |
| !! | TTTGGTGGTGGTACTACTGG+TGG | + | chr5.4:32873570-32873589 | MS.gene53156:CDS | 50.0% |
| !!! | CGTTTTGGTGGTGGTACTAC+TGG | + | chr5.4:32873567-32873586 | MS.gene53156:CDS | 50.0% |
| !!! | GGACGTTTTGGTGGTGGTTA+TGG | + | chr5.4:32873729-32873748 | MS.gene53156:CDS | 50.0% |
| AACGAGAGTGGGTATGGAGG+TGG | + | chr5.4:32873708-32873727 | MS.gene53156:CDS | 55.0% | |
| ACCACCACCAGAGCGATCAT+CGG | - | chr5.4:32873757-32873776 | None:intergenic | 55.0% | |
| CGGCCAGAACCATTCGAGTA+CGG | + | chr5.4:32873239-32873258 | MS.gene53156:CDS | 55.0% | |
| CGTGATAGTCGCTTCAGTGG+TGG | + | chr5.4:32873960-32873979 | MS.gene53156:CDS | 55.0% | |
| GAGAGTGGATATGGGCGTTC+TGG | + | chr5.4:32873798-32873817 | MS.gene53156:CDS | 55.0% | |
| GCCAATGACCGCTATGAGAG+TGG | + | chr5.4:32873783-32873802 | MS.gene53156:CDS | 55.0% | |
| GCTCCGTACTCGAATGGTTC+TGG | - | chr5.4:32873245-32873264 | None:intergenic | 55.0% | |
| GGATATGGGCGTTCTGGTAG+TGG | + | chr5.4:32873804-32873823 | MS.gene53156:CDS | 55.0% | |
| GGTCGTGATAGTCGCTTCAG+TGG | + | chr5.4:32873957-32873976 | MS.gene53156:CDS | 55.0% | |
| GGTGAACAAGGCCAAGGTTG+CGG | + | chr5.4:32873329-32873348 | MS.gene53156:CDS | 55.0% | |
| TCTAATGGTCGTTCCGGTGG+TGG | + | chr5.4:32873672-32873691 | MS.gene53156:CDS | 55.0% | |
| TCTTCCTCCGGTGTTCCTAC+CGG | + | chr5.4:32873453-32873472 | MS.gene53156:CDS | 55.0% | |
| TGGCAAGGTGAACAAGGCCA+AGG | + | chr5.4:32873323-32873342 | MS.gene53156:CDS | 55.0% | |
| ! | GGGTATGGAGGTGGACGTTT+TGG | + | chr5.4:32873717-32873736 | MS.gene53156:CDS | 55.0% |
| ! | GGTTCTAATGGTCGTTCCGG+TGG | + | chr5.4:32873669-32873688 | MS.gene53156:CDS | 55.0% |
| ! | GTCGTTCCGGTGGTGGTTAT+GGG | + | chr5.4:32873679-32873698 | MS.gene53156:CDS | 55.0% |
| !! | GATCGCTCTGGTGGTGGTTA+TGG | + | chr5.4:32873759-32873778 | MS.gene53156:CDS | 55.0% |
| !! | GGAGCTACTGGTGGTGGTTA+TGG | + | chr5.4:32873648-32873667 | MS.gene53156:CDS | 55.0% |
| !! | GGGCGTTCTGGTAGTGGATA+TGG | + | chr5.4:32873810-32873829 | MS.gene53156:CDS | 55.0% |
| !! | GGTGGGTTTGGTGGAAATGG+TGG | + | chr5.4:32873498-32873517 | MS.gene53156:CDS | 55.0% |
| !! | GGTGGTGGGTTTGGTGGAAA+TGG | + | chr5.4:32873495-32873514 | MS.gene53156:CDS | 55.0% |
| !! | GGTTATGGTGGTGGACGTTC+TGG | + | chr5.4:32873624-32873643 | MS.gene53156:CDS | 55.0% |
| !! | TATGGTGGTGGACGTTCTGG+TGG | + | chr5.4:32873627-32873646 | MS.gene53156:CDS | 55.0% |
| !! | TTGGCCTTGTTCACCTTGCC+AGG | - | chr5.4:32873324-32873343 | None:intergenic | 55.0% |
| CGTTCTGGTGGAGCTACTGG+TGG | + | chr5.4:32873639-32873658 | MS.gene53156:CDS | 60.0% | |
| GGACGTTCTGGTGGAGCTAC+TGG | + | chr5.4:32873636-32873655 | MS.gene53156:CDS | 60.0% | |
| GGTTCCGATGATCGCTCTGG+TGG | + | chr5.4:32873750-32873769 | MS.gene53156:CDS | 60.0% | |
| TCCGATGATCGCTCTGGTGG+TGG | + | chr5.4:32873753-32873772 | MS.gene53156:CDS | 60.0% | |
| TCTGGTGGAGCTACTGGTGG+TGG | + | chr5.4:32873642-32873661 | MS.gene53156:CDS | 60.0% | |
| ! | GGTCGTTCCGGTGGTGGTTA+TGG | + | chr5.4:32873678-32873697 | MS.gene53156:CDS | 60.0% |
| ! | GGTGGTGGTACTACTGGTGG+TGG | + | chr5.4:32873573-32873592 | MS.gene53156:CDS | 60.0% |
| !! | GGAGGGCGTTCTGGTGGTTA+TGG | + | chr5.4:32873900-32873919 | MS.gene53156:CDS | 60.0% |
| !! | GGAGGTGGACGTTTTGGTGG+TGG | + | chr5.4:32873723-32873742 | MS.gene53156:CDS | 60.0% |
| !! | GGATATGGAGGGCGTTCTGG+TGG | + | chr5.4:32873894-32873913 | MS.gene53156:CDS | 60.0% |
| GGAAGCGGCAACCGCAACCT+TGG | - | chr5.4:32873343-32873362 | None:intergenic | 65.0% | |
| TCGTCCGGTAGGAACACCGG+AGG | - | chr5.4:32873460-32873479 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.4 | gene | 32873180 | 32874001 | 32873180 | ID=MS.gene53156 |
| chr5.4 | mRNA | 32873180 | 32874001 | 32873180 | ID=MS.gene53156.t1;Parent=MS.gene53156 |
| chr5.4 | exon | 32873180 | 32874001 | 32873180 | ID=MS.gene53156.t1.exon1;Parent=MS.gene53156.t1 |
| chr5.4 | CDS | 32873180 | 32874001 | 32873180 | ID=cds.MS.gene53156.t1;Parent=MS.gene53156.t1 |
| Gene Sequence |
| Protein sequence |
