AlfalfaGEDB | MS.gene53465

M. sativa cultivar XinJiangDaYe / MS.gene53465

KEGG: K02977
GO: GO:0003674 GO:0003735 GO:0005198 GO:0005488 GO:0005515 GO:0005575 GO:0005840 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0019538 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0071704 GO:0110165 GO:1901564 GO:1901566 GO:1901576
PFAM: PF00240.26 PF01599.22

Nr:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene53465.t1	XP_003613203.1	100	155	0	0	1	155	1	155	1.20E-65	259.2

Swissprot:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene53465.t1	P62980	97.4	153	4	0	1	153	1	153	1.7e-65	250.0

Trembl:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene53465.t1	G7K080	100.0	155	0	0	1	155	1	155	8.6e-66	259.2

TFs/TRs:

Gene ID	Type	Classification

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network:

Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene050134	MS.gene53465	0.808238	3.42E-50	-1.69E-46
MS.gene050252	MS.gene53465	0.835204	1.92E-56	-1.69E-46
MS.gene050791	MS.gene53465	0.819218	1.30E-52	-1.69E-46
MS.gene054624	MS.gene53465	0.823291	1.50E-53	-1.69E-46
MS.gene057052	MS.gene53465	0.832138	1.12E-55	-1.69E-46
MS.gene057272	MS.gene53465	0.815559	8.69E-52	-1.69E-46

PPI:

Gene1	Gene2	Type
MS.gene63281	MS.gene53465	PPI
MS.gene53648	MS.gene53465	PPI
MS.gene68345	MS.gene53465	PPI
MS.gene017446	MS.gene53465	PPI
MS.gene44354	MS.gene53465	PPI
MS.gene62258	MS.gene53465	PPI
MS.gene000724	MS.gene53465	PPI
MS.gene53465	MS.gene29459	PPI
MS.gene64311	MS.gene53465	PPI
MS.gene036602	MS.gene53465	PPI
MS.gene96913	MS.gene53465	PPI
MS.gene53465	MS.gene21696	PPI
MS.gene04915	MS.gene53465	PPI
MS.gene53465	MS.gene64316	PPI
MS.gene64327	MS.gene53465	PPI
MS.gene64307	MS.gene53465	PPI
MS.gene065998	MS.gene53465	PPI
MS.gene001381	MS.gene53465	PPI
MS.gene04917	MS.gene53465	PPI
MS.gene53465	MS.gene64317	PPI
MS.gene53465	MS.gene64310	PPI
MS.gene27879	MS.gene53465	PPI
MS.gene024717	MS.gene53465	PPI
MS.gene64308	MS.gene53465	PPI
MS.gene64313	MS.gene53465	PPI
MS.gene000738	MS.gene53465	PPI
MS.gene53465	MS.gene21931	PPI
MS.gene53465	MS.gene64314	PPI
MS.gene023648	MS.gene53465	PPI
MS.gene21932	MS.gene53465	PPI
MS.gene53465	MS.gene80714	PPI
MS.gene53465	MS.gene53650	PPI
MS.gene008225	MS.gene53465	PPI
MS.gene027655	MS.gene53465	PPI
MS.gene64324	MS.gene53465	PPI
MS.gene53662	MS.gene53465	PPI
MS.gene96914	MS.gene53465	PPI
MS.gene53465	MS.gene53659	PPI
MS.gene53465	MS.gene061768	PPI
MS.gene53465	MS.gene89216	PPI
MS.gene96922	MS.gene53465	PPI

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene53465.t1	MTR_5g033960	100.000	155	0	0	1	155	1	155	6.08e-114	319
MS.gene53465.t1	MTR_8g088060	99.355	155	1	0	1	155	1	155	2.15e-113	318
MS.gene53465.t1	MTR_7g105080	100.000	76	0	0	1	76	1	76	1.87e-49	155
MS.gene53465.t1	MTR_3g092130	100.000	76	0	0	1	76	1	76	1.87e-49	155
MS.gene53465.t1	MTR_1g059690	100.000	76	0	0	1	76	1	76	1.87e-49	155
MS.gene53465.t1	MTR_5g092700	98.701	77	1	0	1	77	1	77	2.44e-49	155
MS.gene53465.t1	MTR_5g092700	62.162	74	28	0	3	76	79	152	4.47e-26	97.1
MS.gene53465.t1	MTR_4g073580	98.701	77	1	0	1	77	1	77	2.44e-49	155
MS.gene53465.t1	MTR_4g073580	62.162	74	28	0	3	76	79	152	4.47e-26	97.1
MS.gene53465.t1	MTR_3g092130	100.000	76	0	0	1	76	1	76	2.69e-49	155
MS.gene53465.t1	MTR_4g073580	98.701	77	1	0	1	77	1	77	1.08e-48	155
MS.gene53465.t1	MTR_4g073580	44.231	104	28	1	3	76	79	182	1.55e-19	80.9
MS.gene53465.t1	MTR_4g088485	97.436	78	2	0	1	78	1	78	1.99e-48	155
MS.gene53465.t1	MTR_4g088485	100.000	76	0	0	1	76	138	213	2.42e-48	155
MS.gene53465.t1	MTR_4g088485	78.205	78	2	1	1	78	77	139	1.59e-33	117
MS.gene53465.t1	MTR_7g116360	97.436	78	2	0	1	78	1	78	2.19e-48	156
MS.gene53465.t1	MTR_7g116360	97.436	78	2	0	1	78	77	154	2.19e-48	156
MS.gene53465.t1	MTR_7g116360	100.000	76	0	0	1	76	153	228	2.58e-48	155
MS.gene53465.t1	MTR_1g066390	98.701	77	1	0	1	77	153	229	2.48e-48	156
MS.gene53465.t1	MTR_1g066390	97.436	78	2	0	1	78	1	78	2.62e-48	155
MS.gene53465.t1	MTR_1g066390	97.436	78	2	0	1	78	77	154	2.62e-48	155
MS.gene53465.t1	MTR_8g018230	97.436	78	2	0	1	78	1	78	6.89e-48	156
MS.gene53465.t1	MTR_8g018230	97.436	78	2	0	1	78	77	154	6.89e-48	156
MS.gene53465.t1	MTR_8g018230	97.436	78	2	0	1	78	153	230	6.89e-48	156
MS.gene53465.t1	MTR_4g080920	96.154	78	3	0	1	78	77	154	7.18e-48	154
MS.gene53465.t1	MTR_4g080920	96.154	78	3	0	1	78	1	78	1.05e-47	154
MS.gene53465.t1	MTR_4g080920	68.831	77	24	0	1	77	153	229	2.36e-29	107
MS.gene53465.t1	MTR_6g061930	97.436	78	2	0	1	78	1	78	1.37e-47	155
MS.gene53465.t1	MTR_6g061930	97.436	78	2	0	1	78	77	154	1.37e-47	155
MS.gene53465.t1	MTR_6g061930	100.000	76	0	0	1	76	214	289	1.67e-47	155
MS.gene53465.t1	MTR_6g061930	75.641	78	4	1	1	78	153	215	6.72e-31	112
MS.gene53465.t1	MTR_7g116360	97.436	78	2	0	1	78	49	126	1.51e-47	155
MS.gene53465.t1	MTR_7g116360	97.436	78	2	0	1	78	125	202	1.51e-47	155
MS.gene53465.t1	MTR_7g116360	100.000	76	0	0	1	76	201	276	1.77e-47	155
MS.gene53465.t1	MTR_4g081010	97.436	78	2	0	1	78	1	78	1.67e-47	156
MS.gene53465.t1	MTR_4g081010	97.436	78	2	0	1	78	77	154	1.67e-47	156
MS.gene53465.t1	MTR_4g081010	97.436	78	2	0	1	78	153	230	1.67e-47	156
MS.gene53465.t1	MTR_4g081010	100.000	76	0	0	1	76	229	304	1.97e-47	155
MS.gene53465.t1	MTR_4g081010	97.436	78	2	0	1	78	1	78	1.78e-47	155
MS.gene53465.t1	MTR_4g081010	97.436	78	2	0	1	78	77	154	1.78e-47	155
MS.gene53465.t1	MTR_4g081010	97.436	78	2	0	1	78	153	230	1.78e-47	155
MS.gene53465.t1	MTR_8g081020	97.436	78	2	0	1	78	1	78	6.75e-47	156
MS.gene53465.t1	MTR_8g081020	97.436	78	2	0	1	78	77	154	6.75e-47	156
MS.gene53465.t1	MTR_8g081020	97.436	78	2	0	1	78	153	230	6.75e-47	156
MS.gene53465.t1	MTR_8g081020	97.436	78	2	0	1	78	229	306	6.75e-47	156
MS.gene53465.t1	MTR_8g081020	100.000	76	0	0	1	76	305	380	7.93e-47	156
MS.gene53465.t1	MTR_4g091580	97.436	78	2	0	1	78	1	78	7.36e-47	156
MS.gene53465.t1	MTR_4g091580	97.436	78	2	0	1	78	77	154	7.36e-47	156
MS.gene53465.t1	MTR_4g091580	97.436	78	2	0	1	78	153	230	7.36e-47	156
MS.gene53465.t1	MTR_4g091580	100.000	76	0	0	1	76	305	380	8.73e-47	156
MS.gene53465.t1	MTR_4g091580	96.154	78	3	0	1	78	229	306	2.05e-46	155
MS.gene53465.t1	MTR_4g080797	97.436	78	2	0	1	78	1	78	8.73e-47	156
MS.gene53465.t1	MTR_4g080797	97.436	78	2	0	1	78	77	154	8.73e-47	156
MS.gene53465.t1	MTR_4g080797	97.436	78	2	0	1	78	153	230	8.73e-47	156
MS.gene53465.t1	MTR_4g080797	97.436	78	2	0	1	78	229	306	8.73e-47	156
MS.gene53465.t1	MTR_4g080797	100.000	76	0	0	1	76	305	380	1.02e-46	156
MS.gene53465.t1	MTR_8g018230	97.436	78	2	0	1	78	1	78	8.73e-47	156
MS.gene53465.t1	MTR_8g018230	97.436	78	2	0	1	78	77	154	8.73e-47	156
MS.gene53465.t1	MTR_8g018230	97.436	78	2	0	1	78	153	230	8.73e-47	156
MS.gene53465.t1	MTR_8g018230	97.436	78	2	0	1	78	229	306	8.73e-47	156
MS.gene53465.t1	MTR_8g018230	100.000	76	0	0	1	76	305	380	1.02e-46	156
MS.gene53465.t1	MTR_4g081010	97.436	78	2	0	1	78	1	78	9.11e-47	156
MS.gene53465.t1	MTR_4g081010	97.436	78	2	0	1	78	77	154	9.11e-47	156
MS.gene53465.t1	MTR_4g081010	97.436	78	2	0	1	78	153	230	9.11e-47	156
MS.gene53465.t1	MTR_4g081010	97.436	78	2	0	1	78	229	306	9.11e-47	156
MS.gene53465.t1	MTR_4g081010	100.000	76	0	0	1	76	305	380	1.07e-46	155
MS.gene53465.t1	MTR_8g018230	97.436	78	2	0	1	78	1	78	3.45e-46	156
MS.gene53465.t1	MTR_8g018230	97.436	78	2	0	1	78	77	154	3.45e-46	156
MS.gene53465.t1	MTR_8g018230	97.436	78	2	0	1	78	153	230	3.45e-46	156
MS.gene53465.t1	MTR_8g018230	97.436	78	2	0	1	78	229	306	3.45e-46	156
MS.gene53465.t1	MTR_8g018230	97.436	78	2	0	1	78	305	382	3.45e-46	156
MS.gene53465.t1	MTR_8g018230	100.000	76	0	0	1	76	381	456	4.08e-46	156
MS.gene53465.t1	MTR_8g018230	97.436	78	2	0	1	78	1	78	3.45e-46	156
MS.gene53465.t1	MTR_8g018230	97.436	78	2	0	1	78	77	154	3.45e-46	156
MS.gene53465.t1	MTR_8g018230	97.436	78	2	0	1	78	153	230	3.45e-46	156
MS.gene53465.t1	MTR_8g018230	97.436	78	2	0	1	78	229	306	3.45e-46	156
MS.gene53465.t1	MTR_8g018230	97.436	78	2	0	1	78	305	382	3.45e-46	156
MS.gene53465.t1	MTR_8g018230	100.000	76	0	0	1	76	381	456	4.08e-46	156
MS.gene53465.t1	MTR_8g018230	97.436	78	2	0	1	78	1	78	9.98e-46	156
MS.gene53465.t1	MTR_8g018230	97.436	78	2	0	1	78	77	154	9.98e-46	156
MS.gene53465.t1	MTR_8g018230	97.436	78	2	0	1	78	153	230	9.98e-46	156
MS.gene53465.t1	MTR_8g018230	97.436	78	2	0	1	78	229	306	9.98e-46	156
MS.gene53465.t1	MTR_8g018230	97.436	78	2	0	1	78	305	382	9.98e-46	156
MS.gene53465.t1	MTR_8g018230	97.436	78	2	0	1	78	381	458	9.98e-46	156
MS.gene53465.t1	MTR_8g018230	100.000	76	0	0	1	76	457	532	1.18e-45	156
MS.gene53465.t1	MTR_4g091580	97.436	78	2	0	1	78	1	78	1.09e-45	156
MS.gene53465.t1	MTR_4g091580	97.436	78	2	0	1	78	77	154	1.09e-45	156
MS.gene53465.t1	MTR_4g091580	97.436	78	2	0	1	78	153	230	1.09e-45	156
MS.gene53465.t1	MTR_4g091580	97.436	78	2	0	1	78	229	306	1.09e-45	156
MS.gene53465.t1	MTR_4g091580	97.436	78	2	0	1	78	381	458	1.09e-45	156
MS.gene53465.t1	MTR_4g091580	100.000	76	0	0	1	76	457	532	1.28e-45	156
MS.gene53465.t1	MTR_4g091580	94.872	78	4	0	1	78	305	382	3.55e-44	152
MS.gene53465.t1	MTR_4g081010	97.436	78	2	0	1	78	1	78	1.09e-45	156
MS.gene53465.t1	MTR_4g081010	97.436	78	2	0	1	78	77	154	1.09e-45	156
MS.gene53465.t1	MTR_4g081010	97.436	78	2	0	1	78	153	230	1.09e-45	156
MS.gene53465.t1	MTR_4g081010	97.436	78	2	0	1	78	229	306	1.09e-45	156
MS.gene53465.t1	MTR_4g081010	97.436	78	2	0	1	78	305	382	1.09e-45	156
MS.gene53465.t1	MTR_4g081010	97.436	78	2	0	1	78	381	458	1.09e-45	156
MS.gene53465.t1	MTR_4g081010	100.000	76	0	0	1	76	457	532	1.27e-45	156
MS.gene53465.t1	MTR_4g088495	97.436	78	2	0	1	78	77	154	8.70e-45	156
MS.gene53465.t1	MTR_4g088495	97.436	78	2	0	1	78	153	230	8.70e-45	156
MS.gene53465.t1	MTR_4g088495	97.436	78	2	0	1	78	229	306	8.70e-45	156
MS.gene53465.t1	MTR_4g088495	97.436	78	2	0	1	78	305	382	8.70e-45	156
MS.gene53465.t1	MTR_4g088495	97.436	78	2	0	1	78	381	458	8.70e-45	156
MS.gene53465.t1	MTR_4g088495	97.436	78	2	0	1	78	457	534	8.70e-45	156
MS.gene53465.t1	MTR_4g088495	97.436	78	2	0	1	78	533	610	8.70e-45	156
MS.gene53465.t1	MTR_4g088495	97.436	78	2	0	1	78	609	686	8.70e-45	156
MS.gene53465.t1	MTR_4g088495	97.436	78	2	0	1	78	685	762	8.70e-45	156
MS.gene53465.t1	MTR_4g088495	100.000	76	0	0	1	76	761	836	1.01e-44	156
MS.gene53465.t1	MTR_4g088495	96.154	78	3	0	1	78	1	78	1.62e-43	153
MS.gene53465.t1	MTR_8g479250	94.872	78	4	0	1	78	141	218	2.59e-37	129
MS.gene53465.t1	MTR_8g479250	76.389	72	6	1	1	72	217	277	2.06e-26	101
MS.gene53465.t1	MTR_8g479250	100.000	41	0	0	1	41	1	41	2.84e-20	85.1
MS.gene53465.t1	MTR_8g479250	88.889	36	4	0	43	78	107	142	3.23e-14	68.6
MS.gene53465.t1	MTR_1g046640	71.053	76	22	0	1	76	240	315	5.90e-28	105
MS.gene53465.t1	MTR_5g076810	68.831	77	23	1	1	76	194	270	1.22e-27	103
MS.gene53465.t1	MTR_5g076660	69.863	73	22	0	1	73	266	338	7.78e-27	103
MS.gene53465.t1	MTR_5g067400	68.421	76	24	0	1	76	241	316	1.88e-25	99.0
MS.gene53465.t1	MTR_5g061310	60.000	75	30	0	1	75	2	76	1.23e-24	90.9
MS.gene53465.t1	MTR_5g076370	64.384	73	26	0	1	73	267	339	8.40e-23	92.4
MS.gene53465.t1	MTR_5g076505	61.333	75	29	0	1	75	240	314	9.22e-23	92.0
MS.gene53465.t1	MTR_2g038430	61.333	75	29	0	1	75	268	342	9.44e-23	92.4
MS.gene53465.t1	MTR_5g076720	65.333	75	26	0	1	75	315	389	4.20e-22	90.9
MS.gene53465.t1	MTR_1g046650	57.895	76	32	0	1	76	171	246	4.60e-22	89.0
MS.gene53465.t1	MTR_1g046650	57.895	76	32	0	1	76	240	315	7.52e-22	89.4
MS.gene53465.t1	MTR_1g046650	57.895	76	32	0	1	76	240	315	8.60e-22	89.4
MS.gene53465.t1	MTR_1g046650	57.895	76	32	0	1	76	271	346	1.33e-21	89.4
MS.gene53465.t1	MTR_5g076740	59.211	76	30	1	1	75	86	161	2.04e-21	85.1
MS.gene53465.t1	MTR_2g038420	60.000	75	30	0	1	75	260	334	3.13e-21	88.2
MS.gene53465.t1	MTR_7g094390	58.667	75	31	0	1	75	402	476	6.43e-20	85.5
MS.gene53465.t1	MTR_5g076520	57.333	75	31	1	1	74	244	318	1.10e-18	80.9
MS.gene53465.t1	MTR_7g024290	60.526	76	29	1	1	75	241	316	2.33e-18	80.1
MS.gene53465.t1	MTR_5g061290	53.333	75	35	0	1	75	252	326	1.46e-17	78.2
MS.gene53465.t1	MTR_4g009980	55.224	67	30	0	9	75	4	70	1.73e-17	72.4
MS.gene53465.t1	MTR_5g076350	48.684	76	38	1	1	75	8	83	3.46e-15	67.0
MS.gene53465.t1	MTR_5g076760	58.621	58	24	0	10	67	4	61	8.49e-15	65.9
MS.gene53465.t1	MTR_5g076780	58.333	60	25	0	15	74	4	63	9.30e-15	65.5
MS.gene53465.t1	MTR_5g076340	50.649	77	36	2	1	75	9	85	2.36e-14	64.7
MS.gene53465.t1	MTR_4g080783	41.176	85	46	1	44	124	7	91	2.56e-12	59.7
MS.gene53465.t1	MTR_4g070200	56.140	57	21	2	45	101	17	69	8.85e-11	56.6

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene53465.t1	AT2G47110	96.129	155	6	0	1	155	1	155	1.08e-108	306
MS.gene53465.t1	AT2G47110	96.129	155	6	0	1	155	1	155	1.08e-108	306
MS.gene53465.t1	AT3G62250	96.711	152	5	0	1	152	1	152	5.55e-108	304
MS.gene53465.t1	AT1G23410	92.208	154	12	0	1	154	1	154	5.73e-92	264
MS.gene53465.t1	AT3G52590	100.000	76	0	0	1	76	1	76	2.00e-49	155
MS.gene53465.t1	AT2G36170	100.000	76	0	0	1	76	1	76	2.00e-49	155
MS.gene53465.t1	AT4G05050	97.436	78	2	0	1	78	1	78	2.73e-49	155
MS.gene53465.t1	AT4G05050	100.000	76	0	0	1	76	77	152	3.25e-49	155
MS.gene53465.t1	AT4G05320	97.436	78	2	0	1	78	1	78	2.73e-49	155
MS.gene53465.t1	AT4G05320	100.000	76	0	0	1	76	77	152	3.25e-49	155
MS.gene53465.t1	AT2G35635	98.701	77	1	0	1	77	1	77	3.10e-49	155
MS.gene53465.t1	AT2G35635	62.162	74	28	0	3	76	79	152	1.72e-25	95.5
MS.gene53465.t1	AT1G31340	98.701	77	1	0	1	77	1	77	4.89e-49	155
MS.gene53465.t1	AT1G31340	63.514	74	27	0	3	76	79	152	1.45e-26	98.2
MS.gene53465.t1	AT4G05050	97.436	78	2	0	1	78	1	78	2.29e-48	156
MS.gene53465.t1	AT4G05050	97.436	78	2	0	1	78	77	154	2.29e-48	156
MS.gene53465.t1	AT4G05050	100.000	76	0	0	1	76	153	228	2.70e-48	155
MS.gene53465.t1	AT4G05050	97.436	78	2	0	1	78	1	78	2.29e-48	156
MS.gene53465.t1	AT4G05050	97.436	78	2	0	1	78	77	154	2.29e-48	156
MS.gene53465.t1	AT4G05050	100.000	76	0	0	1	76	153	228	2.70e-48	155
MS.gene53465.t1	AT4G05050	97.436	78	2	0	1	78	1	78	2.29e-48	156
MS.gene53465.t1	AT4G05050	97.436	78	2	0	1	78	77	154	2.29e-48	156
MS.gene53465.t1	AT4G05050	100.000	76	0	0	1	76	153	228	2.70e-48	155
MS.gene53465.t1	AT4G02890	97.436	78	2	0	1	78	1	78	2.29e-48	156
MS.gene53465.t1	AT4G02890	97.436	78	2	0	1	78	77	154	2.29e-48	156
MS.gene53465.t1	AT4G02890	100.000	76	0	0	1	76	153	228	2.70e-48	155
MS.gene53465.t1	AT4G02890	97.436	78	2	0	1	78	1	78	2.29e-48	156
MS.gene53465.t1	AT4G02890	97.436	78	2	0	1	78	77	154	2.29e-48	156
MS.gene53465.t1	AT4G02890	100.000	76	0	0	1	76	153	228	2.70e-48	155
MS.gene53465.t1	AT1G55060	96.154	78	3	0	1	78	77	154	7.39e-48	154
MS.gene53465.t1	AT1G55060	96.104	77	3	0	1	77	153	229	6.62e-46	149
MS.gene53465.t1	AT1G55060	84.615	78	12	0	1	78	1	78	1.33e-41	139
MS.gene53465.t1	AT5G03240	98.701	77	1	0	1	77	229	305	8.36e-48	157
MS.gene53465.t1	AT5G03240	97.436	78	2	0	1	78	1	78	1.30e-47	156
MS.gene53465.t1	AT5G03240	97.436	78	2	0	1	78	77	154	1.30e-47	156
MS.gene53465.t1	AT5G03240	97.436	78	2	0	1	78	153	230	1.30e-47	156
MS.gene53465.t1	AT5G03240	98.701	77	1	0	1	77	229	305	8.36e-48	157
MS.gene53465.t1	AT5G03240	97.436	78	2	0	1	78	1	78	1.30e-47	156
MS.gene53465.t1	AT5G03240	97.436	78	2	0	1	78	77	154	1.30e-47	156
MS.gene53465.t1	AT5G03240	97.436	78	2	0	1	78	153	230	1.30e-47	156
MS.gene53465.t1	AT5G03240	98.701	77	1	0	1	77	229	305	8.36e-48	157
MS.gene53465.t1	AT5G03240	97.436	78	2	0	1	78	1	78	1.30e-47	156
MS.gene53465.t1	AT5G03240	97.436	78	2	0	1	78	77	154	1.30e-47	156
MS.gene53465.t1	AT5G03240	97.436	78	2	0	1	78	153	230	1.30e-47	156
MS.gene53465.t1	AT5G20620	98.701	77	1	0	1	77	229	305	8.36e-48	157
MS.gene53465.t1	AT5G20620	97.436	78	2	0	1	78	1	78	1.30e-47	156
MS.gene53465.t1	AT5G20620	97.436	78	2	0	1	78	77	154	1.30e-47	156
MS.gene53465.t1	AT5G20620	97.436	78	2	0	1	78	153	230	1.30e-47	156
MS.gene53465.t1	AT4G05320	97.436	78	2	0	1	78	1	78	1.49e-47	156
MS.gene53465.t1	AT4G05320	97.436	78	2	0	1	78	77	154	1.49e-47	156
MS.gene53465.t1	AT4G05320	97.436	78	2	0	1	78	153	230	1.49e-47	156
MS.gene53465.t1	AT4G05320	100.000	76	0	0	1	76	229	304	1.75e-47	156
MS.gene53465.t1	AT4G05320	97.436	78	2	0	1	78	1	78	1.49e-47	156
MS.gene53465.t1	AT4G05320	97.436	78	2	0	1	78	77	154	1.49e-47	156
MS.gene53465.t1	AT4G05320	97.436	78	2	0	1	78	153	230	1.49e-47	156
MS.gene53465.t1	AT4G05320	100.000	76	0	0	1	76	229	304	1.75e-47	156
MS.gene53465.t1	AT4G02890	97.436	78	2	0	1	78	1	78	1.49e-47	156
MS.gene53465.t1	AT4G02890	97.436	78	2	0	1	78	77	154	1.49e-47	156
MS.gene53465.t1	AT4G02890	97.436	78	2	0	1	78	153	230	1.49e-47	156
MS.gene53465.t1	AT4G02890	100.000	76	0	0	1	76	229	304	1.75e-47	156
MS.gene53465.t1	AT4G02890	97.436	78	2	0	1	78	1	78	1.49e-47	156
MS.gene53465.t1	AT4G02890	97.436	78	2	0	1	78	77	154	1.49e-47	156
MS.gene53465.t1	AT4G02890	97.436	78	2	0	1	78	153	230	1.49e-47	156
MS.gene53465.t1	AT4G02890	100.000	76	0	0	1	76	229	304	1.75e-47	156
MS.gene53465.t1	AT1G65350	97.436	78	2	0	1	78	1	78	2.65e-47	156
MS.gene53465.t1	AT1G65350	96.154	78	3	0	1	78	152	229	3.65e-46	153
MS.gene53465.t1	AT1G65350	96.154	78	2	1	1	78	77	153	2.39e-44	148
MS.gene53465.t1	AT1G65350	79.121	91	5	1	1	77	228	318	1.17e-38	134
MS.gene53465.t1	AT5G20620	98.701	77	1	0	1	77	305	381	4.62e-47	157
MS.gene53465.t1	AT5G20620	97.436	78	2	0	1	78	1	78	7.15e-47	156
MS.gene53465.t1	AT5G20620	97.436	78	2	0	1	78	77	154	7.15e-47	156
MS.gene53465.t1	AT5G20620	97.436	78	2	0	1	78	153	230	7.15e-47	156
MS.gene53465.t1	AT5G20620	97.436	78	2	0	1	78	229	306	7.15e-47	156
MS.gene53465.t1	AT4G05320	97.436	78	2	0	1	78	1	78	9.14e-47	156
MS.gene53465.t1	AT4G05320	97.436	78	2	0	1	78	77	154	9.14e-47	156
MS.gene53465.t1	AT4G05320	97.436	78	2	0	1	78	153	230	9.14e-47	156
MS.gene53465.t1	AT4G05320	97.436	78	2	0	1	78	229	306	9.14e-47	156
MS.gene53465.t1	AT4G05320	100.000	76	0	0	1	76	305	380	1.07e-46	156
MS.gene53465.t1	AT4G05320	97.436	78	2	0	1	78	1	78	9.14e-47	156
MS.gene53465.t1	AT4G05320	97.436	78	2	0	1	78	77	154	9.14e-47	156
MS.gene53465.t1	AT4G05320	97.436	78	2	0	1	78	153	230	9.14e-47	156
MS.gene53465.t1	AT4G05320	97.436	78	2	0	1	78	229	306	9.14e-47	156
MS.gene53465.t1	AT4G05320	100.000	76	0	0	1	76	305	380	1.07e-46	156
MS.gene53465.t1	AT4G05320	97.436	78	2	0	1	78	1	78	9.14e-47	156
MS.gene53465.t1	AT4G05320	97.436	78	2	0	1	78	77	154	9.14e-47	156
MS.gene53465.t1	AT4G05320	97.436	78	2	0	1	78	153	230	9.14e-47	156
MS.gene53465.t1	AT4G05320	97.436	78	2	0	1	78	229	306	9.14e-47	156
MS.gene53465.t1	AT4G05320	100.000	76	0	0	1	76	305	380	1.07e-46	156
MS.gene53465.t1	AT5G37640	94.872	78	4	0	1	78	79	156	2.37e-46	153
MS.gene53465.t1	AT5G37640	91.026	78	7	0	1	78	155	232	2.27e-42	143
MS.gene53465.t1	AT5G37640	92.208	77	5	1	1	76	231	307	3.52e-40	137
MS.gene53465.t1	AT5G37640	76.923	78	18	0	1	78	3	80	1.32e-33	120
MS.gene53465.t1	AT4G05320	97.436	78	2	0	1	78	1	78	3.61e-46	156
MS.gene53465.t1	AT4G05320	97.436	78	2	0	1	78	77	154	3.61e-46	156
MS.gene53465.t1	AT4G05320	97.436	78	2	0	1	78	153	230	3.61e-46	156
MS.gene53465.t1	AT4G05320	97.436	78	2	0	1	78	229	306	3.61e-46	156
MS.gene53465.t1	AT4G05320	97.436	78	2	0	1	78	305	382	3.61e-46	156
MS.gene53465.t1	AT4G05320	100.000	76	0	0	1	76	381	456	4.27e-46	156
MS.gene53465.t1	AT4G05320	97.436	78	2	0	1	78	1	78	3.61e-46	156
MS.gene53465.t1	AT4G05320	97.436	78	2	0	1	78	77	154	3.61e-46	156
MS.gene53465.t1	AT4G05320	97.436	78	2	0	1	78	153	230	3.61e-46	156
MS.gene53465.t1	AT4G05320	97.436	78	2	0	1	78	229	306	3.61e-46	156
MS.gene53465.t1	AT4G05320	97.436	78	2	0	1	78	305	382	3.61e-46	156
MS.gene53465.t1	AT4G05320	100.000	76	0	0	1	76	381	456	4.27e-46	156
MS.gene53465.t1	AT3G09790	91.026	78	7	0	1	78	79	156	1.56e-39	140
MS.gene53465.t1	AT3G09790	83.333	78	13	0	1	78	3	80	4.71e-36	131
MS.gene53465.t1	AT3G09790	79.730	74	15	0	1	74	552	625	1.29e-30	116
MS.gene53465.t1	AT3G09790	69.231	78	24	0	1	78	393	470	9.81e-28	107
MS.gene53465.t1	AT3G09790	73.684	76	18	1	1	74	319	394	9.21e-27	105
MS.gene53465.t1	AT3G09790	68.675	83	21	1	1	78	238	320	4.49e-26	103
MS.gene53465.t1	AT3G09790	67.073	82	20	2	1	75	155	236	1.15e-25	102
MS.gene53465.t1	AT3G09790	64.706	85	23	1	1	78	469	553	1.22e-24	99.4
MS.gene53465.t1	AT3G09790	91.026	78	7	0	1	78	79	156	1.56e-39	140
MS.gene53465.t1	AT3G09790	83.333	78	13	0	1	78	3	80	4.71e-36	131
MS.gene53465.t1	AT3G09790	79.730	74	15	0	1	74	552	625	1.29e-30	116
MS.gene53465.t1	AT3G09790	69.231	78	24	0	1	78	393	470	9.81e-28	107
MS.gene53465.t1	AT3G09790	73.684	76	18	1	1	74	319	394	9.21e-27	105
MS.gene53465.t1	AT3G09790	68.675	83	21	1	1	78	238	320	4.49e-26	103
MS.gene53465.t1	AT3G09790	67.073	82	20	2	1	75	155	236	1.15e-25	102
MS.gene53465.t1	AT3G09790	64.706	85	23	1	1	78	469	553	1.22e-24	99.4
MS.gene53465.t1	AT1G53930	75.342	73	18	0	1	73	86	158	1.20e-32	114
MS.gene53465.t1	AT1G53950	61.972	71	27	0	1	71	69	139	1.22e-24	92.8
MS.gene53465.t1	AT1G11980	55.263	76	34	0	1	76	1	76	6.34e-24	89.4
MS.gene53465.t1	AT1G53945	44.286	70	39	0	1	70	46	115	2.44e-12	60.5
MS.gene53465.t1	AT5G42220	38.889	72	44	0	1	72	24	95	3.85e-12	63.5
MS.gene53465.t1	AT5G42220	38.889	72	44	0	1	72	24	95	3.85e-12	63.5
MS.gene53465.t1	AT4G12570	38.667	75	45	1	1	74	95	169	7.05e-12	62.8

Find 43 sgRNAs with CRISPR-Local

Find 50 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
ATGCTTATGCTTAATCTTCT+TGG	0.173455	5.3:-23053526	None:intergenic
TCCTTCCTTATCCTGGATCT+TGG	0.283815	5.3:-23053346	None:intergenic
TGCTTATGCTTAATCTTCTT+GGG	0.315578	5.3:-23053525	None:intergenic
ATCTTCGTGAAAACCCTAAC+AGG	0.342406	5.3:+23053270	MS.gene53465:CDS
GATGAAGAGTGGATTCCTTC+TGG	0.355259	5.3:-23053446	None:intergenic
CCTAATGCAGAGTGTGGTGC+TGG	0.387659	5.3:+23053627	MS.gene53465:CDS
CCAGCACCACACTCTGCATT+AGG	0.396683	5.3:-23053627	None:intergenic
TTTATAAGGTTGATGATTCT+GGG	0.414191	5.3:+23053577	MS.gene53465:CDS
GTGGAATTCCTTCCTTATCC+TGG	0.420862	5.3:-23053353	None:intergenic
AATCTTCTTGGGTTTAGTGT+AGG	0.448835	5.3:-23053514	None:intergenic
AAGATAAGACGTTGTTGGTC+CGG	0.466286	5.3:-23053375	None:intergenic
CGGCGAAGATAAGACGTTGT+TGG	0.471359	5.3:-23053380	None:intergenic
CTTGGCTTTCACATTGTCGA+TGG	0.487814	5.3:-23053328	None:intergenic
GTGTGGTGCTGGGACTTTCA+TGG	0.510892	5.3:+23053638	MS.gene53465:CDS
TCCTCTTCTTCGCGCCACCA+CGG	0.511059	5.3:-23053482	None:intergenic
GAAAGCCAAGATCCAGGATA+AGG	0.514154	5.3:+23053341	MS.gene53465:CDS
CTGGGAAGGTGCAGAGGCTG+AGG	0.516022	5.3:+23053595	MS.gene53465:CDS
TTCCTTCTGGATGTTGTAGT+CGG	0.528293	5.3:-23053433	None:intergenic
TCCGTGGTGGCGCGAAGAAG+AGG	0.530944	5.3:+23053481	MS.gene53465:CDS
CAATGTGAAAGCCAAGATCC+AGG	0.546832	5.3:+23053335	MS.gene53465:CDS
ATCAGCTTTCTGATAAACAT+AGG	0.546864	5.3:-23053703	None:intergenic
GTCTGAAGATTCAACTTCGA+GGG	0.549043	5.3:-23053304	None:intergenic
TCTTCGCGCCACCACGGAGA+CGG	0.552813	5.3:-23053476	None:intergenic
CTAATGCAGAGTGTGGTGCT+GGG	0.553402	5.3:+23053628	MS.gene53465:CDS
GCCGGAAAACAGCTCGAAGA+CGG	0.555312	5.3:+23053399	MS.gene53465:CDS
TAAGGTTGATGATTCTGGGA+AGG	0.571726	5.3:+23053581	MS.gene53465:CDS
TGTCTGAAGATTCAACTTCG+AGG	0.572197	5.3:-23053305	None:intergenic
CAACAACGTCTTATCTTCGC+CGG	0.574971	5.3:+23053381	MS.gene53465:CDS
CGTCATTATTGTGGGAAGTG+TGG	0.584527	5.3:+23053675	MS.gene53465:CDS
AGAAGATTAAGCATAAGCAT+AGG	0.593970	5.3:+23053529	MS.gene53465:CDS
CTCGTTCTCCGTCTCCGTGG+TGG	0.595542	5.3:+23053468	MS.gene53465:CDS
GATTAAGCATAAGCATAGGA+AGG	0.601776	5.3:+23053533	MS.gene53465:CDS
GAAGGTGCAGAGGCTGAGGA+AGG	0.602387	5.3:+23053599	MS.gene53465:CDS
ACGGAGAACGAGATGAAGAG+TGG	0.604355	5.3:-23053457	None:intergenic
ATAAGACGTTGTTGGTCCGG+TGG	0.605376	5.3:-23053372	None:intergenic
GCCAAGATCCAGGATAAGGA+AGG	0.608413	5.3:+23053345	MS.gene53465:CDS
TGTTGTAGTCGGCGAGAGTG+CGG	0.616851	5.3:-23053422	None:intergenic
ATGATTCTGGGAAGGTGCAG+AGG	0.626218	5.3:+23053589	MS.gene53465:CDS
GGATAAGGAAGGAATTCCAC+CGG	0.633438	5.3:+23053356	MS.gene53465:CDS
CGCCGACTACAACATCCAGA+AGG	0.634733	5.3:+23053431	MS.gene53465:CDS
CATCTCGTTCTCCGTCTCCG+TGG	0.672511	5.3:+23053465	MS.gene53465:CDS
TCTTCGTGAAAACCCTAACA+GGG	0.705571	5.3:+23053271	MS.gene53465:CDS
GAGTGTCCTAATGCAGAGTG+TGG	0.713681	5.3:+23053621	MS.gene53465:CDS

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!!!	ATTTTGATCGTCATTATTGT+GGG	+	chr5.3:23053667-23053686	MS.gene53465:CDS	25.0%
!!!	TTTATAAGGTTGATGATTCT+GGG	+	chr5.3:23053577-23053596	MS.gene53465:CDS	25.0%
!!!	TTTTATAAGGTTGATGATTC+TGG	+	chr5.3:23053576-23053595	MS.gene53465:CDS	25.0%
	AGAAGATTAAGCATAAGCAT+AGG	+	chr5.3:23053529-23053548	MS.gene53465:CDS	30.0%
	ATCAGCTTTCTGATAAACAT+AGG	-	chr5.3:23053706-23053725	None:intergenic	30.0%
	ATGCTTATGCTTAATCTTCT+TGG	-	chr5.3:23053529-23053548	None:intergenic	30.0%
	TGCTTATGCTTAATCTTCTT+GGG	-	chr5.3:23053528-23053547	None:intergenic	30.0%
!!	CATTTTGATCGTCATTATTG+TGG	+	chr5.3:23053666-23053685	MS.gene53465:CDS	30.0%
	AATCTTCTTGGGTTTAGTGT+AGG	-	chr5.3:23053517-23053536	None:intergenic	35.0%
	GATTAAGCATAAGCATAGGA+AGG	+	chr5.3:23053533-23053552	MS.gene53465:CDS	35.0%
!	GGTTATTGTTTTCCCTGTTA+GGG	-	chr5.3:23053286-23053305	None:intergenic	35.0%
!!	TGCTGTGTTGCAGTTTTATA+AGG	+	chr5.3:23053563-23053582	MS.gene53465:CDS	35.0%
	AAGATAAGACGTTGTTGGTC+CGG	-	chr5.3:23053378-23053397	None:intergenic	40.0%
	ATCTTCGTGAAAACCCTAAC+AGG	+	chr5.3:23053270-23053289	MS.gene53465:CDS	40.0%
	GTCTGAAGATTCAACTTCGA+GGG	-	chr5.3:23053307-23053326	None:intergenic	40.0%
	TCTTCGTGAAAACCCTAACA+GGG	+	chr5.3:23053271-23053290	MS.gene53465:CDS	40.0%
	TGTCTGAAGATTCAACTTCG+AGG	-	chr5.3:23053308-23053327	None:intergenic	40.0%
	TTCCTTCTGGATGTTGTAGT+CGG	-	chr5.3:23053436-23053455	None:intergenic	40.0%
!	GGGTTATTGTTTTCCCTGTT+AGG	-	chr5.3:23053287-23053306	None:intergenic	40.0%
!!	TAAGGTTGATGATTCTGGGA+AGG	+	chr5.3:23053581-23053600	MS.gene53465:CDS	40.0%
	CAACAACGTCTTATCTTCGC+CGG	+	chr5.3:23053381-23053400	MS.gene53465:CDS	45.0%
	CAATGTGAAAGCCAAGATCC+AGG	+	chr5.3:23053335-23053354	MS.gene53465:CDS	45.0%
	CGTCATTATTGTGGGAAGTG+TGG	+	chr5.3:23053675-23053694	MS.gene53465:CDS	45.0%
	GAAAGCCAAGATCCAGGATA+AGG	+	chr5.3:23053341-23053360	MS.gene53465:CDS	45.0%
	GGATAAGGAAGGAATTCCAC+CGG	+	chr5.3:23053356-23053375	MS.gene53465:CDS	45.0%
	GTGGAATTCCTTCCTTATCC+TGG	-	chr5.3:23053356-23053375	None:intergenic	45.0%
	TCCTTCCTTATCCTGGATCT+TGG	-	chr5.3:23053349-23053368	None:intergenic	45.0%
!	CTTGGCTTTCACATTGTCGA+TGG	-	chr5.3:23053331-23053350	None:intergenic	45.0%
!	GATGAAGAGTGGATTCCTTC+TGG	-	chr5.3:23053449-23053468	None:intergenic	45.0%
	ACGGAGAACGAGATGAAGAG+TGG	-	chr5.3:23053460-23053479	None:intergenic	50.0%
	ATAAGACGTTGTTGGTCCGG+TGG	-	chr5.3:23053375-23053394	None:intergenic	50.0%
	CGGCGAAGATAAGACGTTGT+TGG	-	chr5.3:23053383-23053402	None:intergenic	50.0%
	CTAATGCAGAGTGTGGTGCT+GGG	+	chr5.3:23053628-23053647	MS.gene53465:CDS	50.0%
	GAGTGTCCTAATGCAGAGTG+TGG	+	chr5.3:23053621-23053640	MS.gene53465:CDS	50.0%
	GCCAAGATCCAGGATAAGGA+AGG	+	chr5.3:23053345-23053364	MS.gene53465:CDS	50.0%
!	ATGATTCTGGGAAGGTGCAG+AGG	+	chr5.3:23053589-23053608	MS.gene53465:CDS	50.0%
	CCAGCACCACACTCTGCATT+AGG	-	chr5.3:23053630-23053649	None:intergenic	55.0%
	CCTAATGCAGAGTGTGGTGC+TGG	+	chr5.3:23053627-23053646	MS.gene53465:CDS	55.0%
	GCCGGAAAACAGCTCGAAGA+CGG	+	chr5.3:23053399-23053418	MS.gene53465:CDS	55.0%
	TGTTGTAGTCGGCGAGAGTG+CGG	-	chr5.3:23053425-23053444	None:intergenic	55.0%
!	CGCCGACTACAACATCCAGA+AGG	+	chr5.3:23053431-23053450	MS.gene53465:CDS	55.0%
!	GTGTGGTGCTGGGACTTTCA+TGG	+	chr5.3:23053638-23053657	MS.gene53465:CDS	55.0%
!!	GCCGTCTTCGAGCTGTTTTC+CGG	-	chr5.3:23053403-23053422	None:intergenic	55.0%
	CATCTCGTTCTCCGTCTCCG+TGG	+	chr5.3:23053465-23053484	MS.gene53465:CDS	60.0%
	TCCTCTTCTTCGCGCCACCA+CGG	-	chr5.3:23053485-23053504	None:intergenic	60.0%
!	GAAGGTGCAGAGGCTGAGGA+AGG	+	chr5.3:23053599-23053618	MS.gene53465:CDS	60.0%
	CTCGTTCTCCGTCTCCGTGG+TGG	+	chr5.3:23053468-23053487	MS.gene53465:CDS	65.0%
	TCTTCGCGCCACCACGGAGA+CGG	-	chr5.3:23053479-23053498	None:intergenic	65.0%
!	CTGGGAAGGTGCAGAGGCTG+AGG	+	chr5.3:23053595-23053614	MS.gene53465:CDS	65.0%
!	TCCGTGGTGGCGCGAAGAAG+AGG	+	chr5.3:23053481-23053500	MS.gene53465:CDS	65.0%

Chromosome	Type	Strat	End	Strand	Name
chr5.3	gene	23053264	23053731	23053264	ID=MS.gene53465
chr5.3	mRNA	23053264	23053731	23053264	ID=MS.gene53465.t1;Parent=MS.gene53465
chr5.3	exon	23053264	23053731	23053264	ID=MS.gene53465.t1.exon1;Parent=MS.gene53465.t1
chr5.3	CDS	23053264	23053731	23053264	ID=cds.MS.gene53465.t1;Parent=MS.gene53465.t1

Gene Sequence

>MS.gene53465

ATGCAGATCTTCGTGAAAACCCTAACAGGGAAAACAATAACCCTCGAAGTTGAATCTTCAGACACCATCGACAATGTGAAAGCCAAGATCCAGGATAAGGAAGGAATTCCACCGGACCAACAACGTCTTATCTTCGCCGGAAAACAGCTCGAAGACGGCCGCACTCTCGCCGACTACAACATCCAGAAGGAATCCACTCTTCATCTCGTTCTCCGTCTCCGTGGTGGCGCGAAGAAGAGGAAGAAGAAGACCTACACTAAACCCAAGAAGATTAAGCATAAGCATAGGAAGGTGAAGCTTGCTGTGTTGCAGTTTTATAAGGTTGATGATTCTGGGAAGGTGCAGAGGCTGAGGAAGGAGTGTCCTAATGCAGAGTGTGGTGCTGGGACTTTCATGGCGAATCATTTTGATCGTCATTATTGTGGGAAGTGTGGTTTAACCTATGTTTATCAGAAAGCTGATGCTTGA

Protein sequence

>MS.gene53465.t1

MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGAKKRKKKTYTKPKKIKHKHRKVKLAVLQFYKVDDSGKVQRLRKECPNAECGAGTFMANHFDRHYCGKCGLTYVYQKADA