AlfalfaGEDB | MS.gene29459

M. sativa cultivar XinJiangDaYe / MS.gene29459

KEGG: K13448
GO: GO:0003674 GO:0005488 GO:0005509 GO:0043167 GO:0043169 GO:0046872
PFAM: PF13499.9

Nr:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene29459.t1	XP_003616365.1	98.6	138	2	0	1	138	1	138	4.00E-28	134.4

Swissprot:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene29459.t1	Q9C8Y1	65.9	138	44	1	3	137	14	151	7.6e-12	71.6

Trembl:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene29459.t1	G7K1X5	98.6	138	2	0	1	138	1	138	2.9e-28	134.4

TFs/TRs:

Gene ID	Type	Classification

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network:

Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene052016	MS.gene29459	0.810803	9.61E-51	-1.69E-46
MS.gene054892	MS.gene29459	0.833475	5.22E-56	-1.69E-46
MS.gene054893	MS.gene29459	0.833492	5.17E-56	-1.69E-46
MS.gene060413	MS.gene29459	0.803006	4.28E-49	-1.69E-46

PPI:

Gene1	Gene2	Type
MS.gene53659	MS.gene29459	PPI
MS.gene000724	MS.gene29459	PPI
MS.gene64314	MS.gene29459	PPI
MS.gene21696	MS.gene29459	PPI
MS.gene74452	MS.gene29459	PPI
MS.gene060446	MS.gene29459	PPI
MS.gene64311	MS.gene29459	PPI
MS.gene036602	MS.gene29459	PPI
MS.gene008831	MS.gene29459	PPI
MS.gene96913	MS.gene29459	PPI
MS.gene040331	MS.gene29459	PPI
MS.gene64317	MS.gene29459	PPI
MS.gene58906	MS.gene29459	PPI
MS.gene71511	MS.gene29459	PPI
MS.gene58860	MS.gene29459	PPI
MS.gene98294	MS.gene29459	PPI
MS.gene27516	MS.gene29459	PPI
MS.gene02545	MS.gene29459	PPI
MS.gene053319	MS.gene29459	PPI
MS.gene04915	MS.gene29459	PPI
MS.gene49270	MS.gene29459	PPI
MS.gene61009	MS.gene29459	PPI
MS.gene64327	MS.gene29459	PPI
MS.gene074100	MS.gene29459	PPI
MS.gene64307	MS.gene29459	PPI
MS.gene53465	MS.gene29459	PPI
MS.gene025797	MS.gene29459	PPI
MS.gene29459	MS.gene35562	PPI
MS.gene026618	MS.gene29459	PPI
MS.gene04917	MS.gene29459	PPI
MS.gene64316	MS.gene29459	PPI
MS.gene074045	MS.gene29459	PPI
MS.gene47195	MS.gene29459	PPI
MS.gene036930	MS.gene29459	PPI
MS.gene013748	MS.gene29459	PPI
MS.gene55545	MS.gene29459	PPI
MS.gene29459	MS.gene21696	PPI
MS.gene65954	MS.gene29459	PPI
MS.gene27879	MS.gene29459	PPI
MS.gene011400	MS.gene29459	PPI
MS.gene29459	MS.gene64317	PPI
MS.gene057167	MS.gene29459	PPI
MS.gene09960	MS.gene29459	PPI
MS.gene024717	MS.gene29459	PPI
MS.gene056461	MS.gene29459	PPI
MS.gene64308	MS.gene29459	PPI
MS.gene64313	MS.gene29459	PPI
MS.gene93087	MS.gene29459	PPI
MS.gene97948	MS.gene29459	PPI
MS.gene55496	MS.gene29459	PPI
MS.gene003880	MS.gene29459	PPI
MS.gene54637	MS.gene29459	PPI
MS.gene000738	MS.gene29459	PPI
MS.gene49271	MS.gene29459	PPI
MS.gene67281	MS.gene29459	PPI
MS.gene62540	MS.gene29459	PPI
MS.gene061261	MS.gene29459	PPI
MS.gene025777	MS.gene29459	PPI
MS.gene022456	MS.gene29459	PPI
MS.gene062239	MS.gene29459	PPI
MS.gene93763	MS.gene29459	PPI
MS.gene46886	MS.gene29459	PPI
MS.gene29459	MS.gene79028	PPI
MS.gene53650	MS.gene29459	PPI
MS.gene061768	MS.gene29459	PPI
MS.gene026940	MS.gene29459	PPI
MS.gene21155	MS.gene29459	PPI
MS.gene71207	MS.gene29459	PPI
MS.gene92775	MS.gene29459	PPI
MS.gene023648	MS.gene29459	PPI
MS.gene07422	MS.gene29459	PPI
MS.gene03228	MS.gene29459	PPI
MS.gene09934	MS.gene29459	PPI
MS.gene21932	MS.gene29459	PPI
MS.gene28338	MS.gene29459	PPI
MS.gene85596	MS.gene29459	PPI
MS.gene94551	MS.gene29459	PPI
MS.gene008225	MS.gene29459	PPI
MS.gene027655	MS.gene29459	PPI
MS.gene79028	MS.gene29459	PPI
MS.gene056383	MS.gene29459	PPI
MS.gene64324	MS.gene29459	PPI
MS.gene022455	MS.gene29459	PPI
MS.gene29459	MS.gene64314	PPI
MS.gene015470	MS.gene29459	PPI
MS.gene63000	MS.gene29459	PPI
MS.gene22553	MS.gene29459	PPI
MS.gene53662	MS.gene29459	PPI
MS.gene35563	MS.gene29459	PPI
MS.gene96914	MS.gene29459	PPI
MS.gene29459	MS.gene53650	PPI
MS.gene033361	MS.gene29459	PPI
MS.gene038456	MS.gene29459	PPI
MS.gene29459	MS.gene93763	PPI
MS.gene80714	MS.gene29459	PPI
MS.gene004899	MS.gene29459	PPI
MS.gene96922	MS.gene29459	PPI
MS.gene009021	MS.gene29459	PPI
MS.gene47134	MS.gene29459	PPI
MS.gene46237	MS.gene29459	PPI
MS.gene29459	MS.gene71511	PPI
MS.gene87673	MS.gene29459	PPI
MS.gene98295	MS.gene29459	PPI
MS.gene29793	MS.gene29459	PPI
MS.gene05284	MS.gene29459	PPI
MS.gene21931	MS.gene29459	PPI
MS.gene041795	MS.gene29459	PPI
MS.gene046988	MS.gene29459	PPI
MS.gene065998	MS.gene29459	PPI
MS.gene001381	MS.gene29459	PPI
MS.gene057293	MS.gene29459	PPI
MS.gene63281	MS.gene29459	PPI
MS.gene29794	MS.gene29459	PPI
MS.gene53648	MS.gene29459	PPI
MS.gene68345	MS.gene29459	PPI
MS.gene017446	MS.gene29459	PPI
MS.gene44354	MS.gene29459	PPI
MS.gene35562	MS.gene29459	PPI
MS.gene89216	MS.gene29459	PPI
MS.gene001246	MS.gene29459	PPI
MS.gene040127	MS.gene29459	PPI
MS.gene62258	MS.gene29459	PPI
MS.gene64310	MS.gene29459	PPI

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene29459.t1	MTR_5g079340	95.683	139	6	0	1	139	1	139	1.51e-93	266
MS.gene29459.t1	MTR_3g067610	74.453	137	32	1	3	139	4	137	8.58e-71	209
MS.gene29459.t1	MTR_1g047100	74.648	142	30	2	1	138	1	140	2.02e-69	206
MS.gene29459.t1	MTR_1g046950	68.750	144	38	2	1	139	1	142	7.91e-66	196
MS.gene29459.t1	MTR_5g008705	70.000	130	34	2	12	138	2	129	5.28e-56	171
MS.gene29459.t1	MTR_5g008695	70.085	117	28	2	28	139	1	115	9.16e-50	155
MS.gene29459.t1	MTR_8g107110	58.519	135	56	0	3	137	23	157	1.58e-49	156
MS.gene29459.t1	MTR_6g079570	56.204	137	59	1	3	138	25	161	2.99e-46	148
MS.gene29459.t1	MTR_1g032070	50.735	136	66	1	3	137	45	180	1.84e-41	137
MS.gene29459.t1	MTR_8g105230	47.727	132	68	1	4	134	36	167	1.92e-38	129
MS.gene29459.t1	MTR_7g075040	47.297	148	66	4	1	137	44	190	1.85e-34	119
MS.gene29459.t1	MTR_8g036075	51.389	144	59	5	4	137	49	191	3.04e-33	115
MS.gene29459.t1	MTR_7g089760	45.985	137	71	2	4	137	5	141	4.42e-33	114
MS.gene29459.t1	MTR_4g067270	42.754	138	76	2	3	137	4	141	1.17e-32	112
MS.gene29459.t1	MTR_6g023460	42.857	133	72	2	7	137	11	141	5.46e-32	110
MS.gene29459.t1	MTR_7g087610	42.963	135	76	1	4	137	12	146	4.86e-31	108
MS.gene29459.t1	MTR_7g087610	40.000	65	39	0	75	139	11	75	1.55e-11	58.5
MS.gene29459.t1	MTR_5g088320	43.704	135	75	1	4	137	12	146	6.24e-31	108
MS.gene29459.t1	MTR_5g088320	39.706	68	41	0	72	139	8	75	9.62e-12	59.3
MS.gene29459.t1	MTR_6g025320	43.704	135	75	1	4	137	12	146	7.19e-31	108
MS.gene29459.t1	MTR_6g025320	40.000	65	39	0	75	139	11	75	1.63e-11	58.5
MS.gene29459.t1	MTR_1g041285	42.963	135	76	1	4	137	12	146	2.41e-30	107
MS.gene29459.t1	MTR_4g086260	43.066	137	77	1	3	139	56	191	2.89e-30	108
MS.gene29459.t1	MTR_5g017550	42.222	135	78	0	3	137	47	181	4.27e-30	107
MS.gene29459.t1	MTR_1g076650	43.609	133	74	1	6	137	14	146	1.12e-29	105
MS.gene29459.t1	MTR_5g017510	41.912	136	78	1	3	137	47	182	1.71e-29	105
MS.gene29459.t1	MTR_5g017560	41.912	136	78	1	3	137	47	182	1.71e-29	105
MS.gene29459.t1	MTR_3g089070	40.458	131	76	2	8	137	10	139	3.22e-28	101
MS.gene29459.t1	MTR_3g089090	40.458	131	76	2	8	137	9	138	3.31e-28	101
MS.gene29459.t1	MTR_4g103650	40.299	134	80	0	4	137	2	135	5.60e-28	100
MS.gene29459.t1	MTR_4g115170	43.506	154	68	4	3	137	63	216	1.27e-27	102
MS.gene29459.t1	MTR_4g103630	39.552	134	81	0	4	137	6	139	5.03e-27	98.2
MS.gene29459.t1	MTR_4g103655	39.552	134	81	0	4	137	6	139	6.25e-27	98.2
MS.gene29459.t1	MTR_2g098890	40.714	140	78	2	3	137	63	202	1.04e-26	99.4
MS.gene29459.t1	MTR_8g066630	36.232	138	84	2	4	137	17	154	1.05e-26	98.2
MS.gene29459.t1	MTR_7g090450	39.437	142	76	4	4	137	73	212	1.61e-26	99.0
MS.gene29459.t1	MTR_8g078270	36.296	135	85	1	5	138	54	188	8.46e-25	94.0
MS.gene29459.t1	MTR_4g112460	32.143	140	92	1	3	139	10	149	1.38e-23	90.5
MS.gene29459.t1	MTR_0168s0120	42.727	110	62	1	29	137	1	110	1.85e-23	88.6
MS.gene29459.t1	MTR_6g025320	42.727	110	62	1	29	137	1	110	1.85e-23	88.6
MS.gene29459.t1	MTR_3g083470	34.783	138	79	2	1	137	90	217	1.21e-22	89.4
MS.gene29459.t1	MTR_1g071150	36.765	136	82	2	4	137	12	145	2.71e-22	86.3
MS.gene29459.t1	MTR_6g007613	35.766	137	87	1	4	139	29	165	4.92e-21	84.0
MS.gene29459.t1	MTR_7g074020	35.556	135	86	1	4	137	30	164	5.48e-21	83.6
MS.gene29459.t1	MTR_7g074020	35.135	74	45	1	65	138	22	92	6.65e-11	57.4
MS.gene29459.t1	MTR_7g074240	36.986	146	79	3	5	137	25	170	5.77e-20	81.3
MS.gene29459.t1	MTR_8g069915	28.472	144	97	2	2	139	7	150	8.69e-20	80.5
MS.gene29459.t1	MTR_5g079470	60.938	64	24	1	7	70	13	75	1.04e-18	75.5
MS.gene29459.t1	MTR_5g027000	32.061	131	86	2	9	137	27	156	1.10e-18	77.4
MS.gene29459.t1	MTR_8g099095	37.226	137	77	4	5	137	372	503	2.32e-18	80.5
MS.gene29459.t1	MTR_7g115040	35.385	130	83	1	9	137	17	146	1.02e-17	74.7
MS.gene29459.t1	MTR_5g092810	35.294	136	81	2	5	137	398	529	1.24e-17	78.6
MS.gene29459.t1	MTR_5g011850	32.867	143	89	4	2	139	7	147	1.35e-17	74.3
MS.gene29459.t1	MTR_3g051770	35.252	139	84	1	5	137	389	527	1.40e-17	78.2
MS.gene29459.t1	MTR_4g132070	35.556	135	82	2	5	137	397	528	1.40e-17	78.2
MS.gene29459.t1	MTR_7g074020	34.454	119	77	1	4	121	30	148	1.74e-17	74.3
MS.gene29459.t1	MTR_7g074020	35.135	74	45	1	65	138	22	92	6.75e-11	57.0
MS.gene29459.t1	MTR_5g009830	35.971	139	80	4	5	139	372	505	2.44e-17	77.4
MS.gene29459.t1	MTR_6g007613	34.454	119	77	1	4	121	29	147	5.39e-17	73.2
MS.gene29459.t1	MTR_6g007613	36.486	74	45	1	65	138	20	91	4.78e-11	57.4
MS.gene29459.t1	MTR_1g030440	32.192	146	82	2	3	137	21	160	1.23e-16	72.4
MS.gene29459.t1	MTR_5g089320	33.577	137	86	3	5	139	374	507	2.36e-16	74.7
MS.gene29459.t1	MTR_4g107490	34.328	134	86	2	5	137	379	511	5.77e-16	73.6
MS.gene29459.t1	MTR_3g055570	32.593	135	77	2	4	138	52	172	3.71e-15	68.6
MS.gene29459.t1	MTR_1g026190	30.657	137	90	2	5	139	388	521	3.89e-15	71.2
MS.gene29459.t1	MTR_0028s0170	32.593	135	86	3	5	137	384	515	4.81e-15	70.9
MS.gene29459.t1	MTR_3g088655	32.680	153	78	5	4	137	8	154	4.17e-14	65.5
MS.gene29459.t1	MTR_1g046960	71.053	38	11	0	28	65	1	38	1.57e-13	62.8
MS.gene29459.t1	MTR_3g098090	31.387	137	88	2	5	139	338	470	2.87e-13	65.9
MS.gene29459.t1	MTR_3g098070	31.655	139	85	4	5	139	335	467	6.77e-13	64.7
MS.gene29459.t1	MTR_7g068710	30.370	135	94	0	3	137	360	494	9.44e-13	64.3
MS.gene29459.t1	MTR_4g132040	31.618	136	86	2	5	137	401	532	1.69e-12	63.5
MS.gene29459.t1	MTR_1g096490	32.609	138	85	4	5	139	336	468	2.16e-12	63.2
MS.gene29459.t1	MTR_4g066660	31.655	139	86	4	3	137	376	509	5.04e-12	62.4
MS.gene29459.t1	MTR_7g106710	33.083	133	83	3	9	139	445	573	8.31e-12	61.6
MS.gene29459.t1	MTR_1g052530	30.827	133	92	0	5	137	358	490	8.70e-12	61.6
MS.gene29459.t1	MTR_7g091890	31.298	131	86	2	9	137	368	496	1.09e-11	61.2
MS.gene29459.t1	MTR_3g055510	31.000	100	53	1	40	139	52	135	1.54e-11	58.5
MS.gene29459.t1	MTR_8g095440	30.935	139	86	4	5	139	336	468	1.96e-11	60.5
MS.gene29459.t1	MTR_7g011010	35.772	123	64	5	18	137	87	197	5.14e-11	58.2
MS.gene29459.t1	MTR_1g054865	32.353	136	84	4	5	137	467	597	6.44e-11	59.3

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene29459.t1	AT5G37770	55.319	141	58	1	3	138	16	156	3.59e-49	155
MS.gene29459.t1	AT5G37770	55.319	141	58	1	3	138	16	156	3.59e-49	155
MS.gene29459.t1	AT1G66400	55.797	138	58	2	3	137	14	151	1.23e-48	154
MS.gene29459.t1	AT1G18210	54.815	135	58	2	3	137	22	153	3.00e-47	150
MS.gene29459.t1	AT1G18210	54.815	135	58	2	3	137	22	153	3.00e-47	150
MS.gene29459.t1	AT1G73630	53.285	137	61	2	2	138	18	151	4.57e-46	147
MS.gene29459.t1	AT1G24620	49.265	136	68	1	4	138	37	172	8.21e-42	137
MS.gene29459.t1	AT2G15680	48.529	136	69	1	3	138	49	183	8.61e-40	132
MS.gene29459.t1	AT5G17470	46.763	139	67	2	5	138	3	139	7.62e-36	120
MS.gene29459.t1	AT2G36180	48.889	135	65	1	7	137	3	137	2.20e-34	117
MS.gene29459.t1	AT1G05990	44.928	138	72	2	4	137	5	142	5.78e-34	116
MS.gene29459.t1	AT3G07490	45.255	137	72	2	4	137	5	141	1.05e-33	115
MS.gene29459.t1	AT3G10190	44.118	136	74	2	4	137	70	205	1.71e-32	114
MS.gene29459.t1	AT5G21274	44.444	135	74	1	4	137	12	146	2.83e-31	109
MS.gene29459.t1	AT5G21274	40.000	65	39	0	75	139	11	75	1.65e-11	58.5
MS.gene29459.t1	AT5G37780	43.704	135	75	1	4	137	12	146	3.33e-31	109
MS.gene29459.t1	AT5G37780	38.235	68	42	0	72	139	8	75	4.13e-11	57.4
MS.gene29459.t1	AT1G66410	43.704	135	75	1	4	137	12	146	3.33e-31	109
MS.gene29459.t1	AT1G66410	38.235	68	42	0	72	139	8	75	4.13e-11	57.4
MS.gene29459.t1	AT3G03400	43.651	126	68	1	8	130	9	134	4.52e-31	108
MS.gene29459.t1	AT3G56800	43.704	135	75	1	4	137	12	146	7.29e-31	108
MS.gene29459.t1	AT3G56800	40.000	65	39	0	75	139	11	75	1.65e-11	58.5
MS.gene29459.t1	AT2G27030	43.704	135	75	1	4	137	12	146	7.29e-31	108
MS.gene29459.t1	AT2G27030	40.000	65	39	0	75	139	11	75	1.65e-11	58.5
MS.gene29459.t1	AT2G41110	43.704	135	75	1	4	137	12	146	7.29e-31	108
MS.gene29459.t1	AT2G41110	40.000	65	39	0	75	139	11	75	1.65e-11	58.5
MS.gene29459.t1	AT3G43810	43.704	135	75	1	4	137	12	146	7.53e-31	108
MS.gene29459.t1	AT3G43810	40.000	65	39	0	75	139	11	75	1.71e-11	58.5
MS.gene29459.t1	AT4G12860	45.255	137	72	2	4	137	5	141	9.22e-31	108
MS.gene29459.t1	AT2G27030	43.704	135	75	1	4	137	12	146	1.97e-30	108
MS.gene29459.t1	AT2G27030	40.000	65	39	0	75	139	11	75	4.21e-11	58.2
MS.gene29459.t1	AT2G43290	39.437	142	78	2	4	137	65	206	2.77e-30	108
MS.gene29459.t1	AT4G03290	39.437	142	80	2	4	139	5	146	6.17e-30	106
MS.gene29459.t1	AT3G43810	43.704	135	75	1	4	137	12	146	7.27e-30	107
MS.gene29459.t1	AT3G43810	40.000	65	39	0	75	139	11	75	6.67e-11	58.2
MS.gene29459.t1	AT3G59440	39.706	136	80	1	4	137	51	186	9.79e-30	107
MS.gene29459.t1	AT4G37010	43.066	137	77	1	4	139	27	163	1.00e-28	103
MS.gene29459.t1	AT4G37010	43.066	137	77	1	4	139	31	167	1.30e-28	103
MS.gene29459.t1	AT3G22930	40.000	135	80	1	4	137	35	169	1.64e-28	103
MS.gene29459.t1	AT2G41110	40.136	147	75	2	4	137	12	158	1.26e-27	100
MS.gene29459.t1	AT4G14640	39.259	135	81	1	4	137	13	147	5.70e-27	98.6
MS.gene29459.t1	AT5G37780	39.333	150	75	2	4	137	12	161	5.74e-27	99.0
MS.gene29459.t1	AT5G42380	39.416	137	81	1	3	137	48	184	2.13e-25	95.5
MS.gene29459.t1	AT3G50360	37.956	137	84	1	4	139	27	163	2.14e-25	95.1
MS.gene29459.t1	AT5G37780	36.646	161	75	2	4	137	12	172	3.78e-25	94.7
MS.gene29459.t1	AT5G37780	42.149	121	69	1	18	137	13	133	4.80e-25	93.2
MS.gene29459.t1	AT1G66410	42.149	121	69	1	18	137	36	156	6.90e-25	93.6
MS.gene29459.t1	AT2G41100	33.987	153	83	1	4	138	66	218	1.71e-24	95.5
MS.gene29459.t1	AT2G41100	31.008	129	72	1	28	139	1	129	2.25e-14	68.6
MS.gene29459.t1	AT2G41100	33.987	153	83	1	4	138	66	218	1.71e-24	95.5
MS.gene29459.t1	AT2G41100	31.008	129	72	1	28	139	1	129	2.25e-14	68.6
MS.gene29459.t1	AT2G41100	33.987	153	83	1	4	138	66	218	1.71e-24	95.5
MS.gene29459.t1	AT2G41100	31.008	129	72	1	28	139	1	129	2.25e-14	68.6
MS.gene29459.t1	AT1G76650	38.060	134	83	0	4	137	43	176	2.25e-24	92.8
MS.gene29459.t1	AT1G76650	38.060	134	83	0	4	137	43	176	2.25e-24	92.8
MS.gene29459.t1	AT2G41100	33.987	153	83	1	4	138	101	253	2.76e-24	95.5
MS.gene29459.t1	AT2G41100	34.641	153	83	1	4	139	12	164	3.73e-23	92.4
MS.gene29459.t1	AT2G41100	33.987	153	83	1	4	138	101	253	2.76e-24	95.5
MS.gene29459.t1	AT2G41100	34.641	153	83	1	4	139	12	164	3.73e-23	92.4
MS.gene29459.t1	AT2G41410	38.129	139	82	3	4	138	70	208	3.01e-24	93.2
MS.gene29459.t1	AT1G18530	31.724	145	93	2	1	139	1	145	9.87e-24	90.5
MS.gene29459.t1	AT1G66410	42.727	110	62	1	29	137	1	110	9.97e-24	89.0
MS.gene29459.t1	AT1G66410	42.727	110	62	1	29	137	1	110	9.97e-24	89.0
MS.gene29459.t1	AT1G32250	32.394	142	89	2	3	137	15	156	1.84e-23	90.1
MS.gene29459.t1	AT3G43810	42.727	110	62	1	29	137	1	110	1.93e-23	88.6
MS.gene29459.t1	AT3G43810	42.727	110	62	1	29	137	1	110	1.93e-23	88.6
MS.gene29459.t1	AT2G41090	38.971	136	77	3	4	137	12	143	1.55e-22	88.2
MS.gene29459.t1	AT4G14640	38.017	121	74	1	18	137	9	129	5.63e-22	85.1
MS.gene29459.t1	AT1G76650	37.313	134	74	1	4	137	43	166	7.09e-22	85.9
MS.gene29459.t1	AT3G50770	33.803	142	88	3	3	138	63	204	1.23e-21	86.3
MS.gene29459.t1	AT3G03410	34.586	133	79	2	5	137	3	127	6.93e-21	82.4
MS.gene29459.t1	AT4G20780	35.065	154	79	2	5	137	30	183	7.81e-20	81.3
MS.gene29459.t1	AT3G51920	31.429	140	92	2	2	137	7	146	1.31e-19	79.7
MS.gene29459.t1	AT3G25600	28.058	139	97	1	4	139	12	150	1.41e-19	79.7
MS.gene29459.t1	AT1G76640	35.000	140	82	2	4	137	22	158	4.03e-19	78.6
MS.gene29459.t1	AT3G20410	37.500	136	78	2	5	137	397	528	7.65e-19	82.0
MS.gene29459.t1	AT3G20410	37.500	136	78	2	5	137	397	528	7.65e-19	82.0
MS.gene29459.t1	AT1G50700	36.765	136	79	2	5	137	379	510	1.36e-18	81.3
MS.gene29459.t1	AT5G17480	59.375	64	25	1	7	70	12	74	2.34e-18	74.7
MS.gene29459.t1	AT4G04740	34.815	135	83	2	5	137	374	505	9.05e-18	79.0
MS.gene29459.t1	AT4G04740	34.815	135	83	2	5	137	374	505	9.05e-18	79.0
MS.gene29459.t1	AT4G04740	34.815	135	83	2	5	137	374	505	9.05e-18	79.0
MS.gene29459.t1	AT4G04740	34.815	135	83	2	5	137	374	505	9.05e-18	79.0
MS.gene29459.t1	AT4G04740	34.815	135	83	2	5	137	374	505	9.05e-18	79.0
MS.gene29459.t1	AT4G04740	34.815	135	83	2	5	137	374	505	9.05e-18	79.0
MS.gene29459.t1	AT4G21940	35.556	135	82	2	5	137	407	538	1.50e-17	78.2
MS.gene29459.t1	AT4G21940	35.556	135	82	2	5	137	407	538	1.57e-17	78.2
MS.gene29459.t1	AT4G23650	35.252	139	81	4	5	139	384	517	1.79e-17	77.8
MS.gene29459.t1	AT4G04720	36.296	135	81	2	5	137	385	516	1.80e-17	77.8
MS.gene29459.t1	AT4G04720	36.296	135	81	2	5	137	385	516	1.80e-17	77.8
MS.gene29459.t1	AT3G03430	54.688	64	28	1	7	70	12	74	2.80e-17	71.6
MS.gene29459.t1	AT1G12310	32.877	146	85	5	2	139	8	148	6.23e-17	72.8
MS.gene29459.t1	AT4G04695	34.815	135	83	2	5	137	337	468	6.64e-17	76.3
MS.gene29459.t1	AT5G19360	34.815	135	83	3	5	137	374	505	1.96e-16	75.1
MS.gene29459.t1	AT3G03000	32.353	136	90	1	4	137	20	155	2.41e-16	71.6
MS.gene29459.t1	AT3G03000	42.623	61	35	0	2	62	92	152	2.57e-11	58.5
MS.gene29459.t1	AT1G61950	36.296	135	81	2	5	137	405	536	2.55e-16	74.7
MS.gene29459.t1	AT4G04700	34.074	135	84	2	5	137	337	468	4.72e-16	73.9
MS.gene29459.t1	AT5G44460	33.784	148	81	3	5	137	29	174	6.34e-16	70.9
MS.gene29459.t1	AT1G62820	31.429	140	86	4	5	139	14	148	7.21e-16	70.1
MS.gene29459.t1	AT5G12180	34.074	135	84	3	5	137	379	510	8.23e-16	73.2
MS.gene29459.t1	AT1G74740	35.821	134	84	2	5	137	365	497	1.51e-15	72.4
MS.gene29459.t1	AT2G41100	30.469	128	71	1	29	138	1	128	2.46e-15	69.7
MS.gene29459.t1	AT1G76040	32.847	137	87	3	5	139	179	312	9.04e-15	69.7
MS.gene29459.t1	AT1G76040	32.847	137	87	3	5	139	179	312	9.04e-15	69.7
MS.gene29459.t1	AT3G22930	36.842	95	59	1	4	97	35	129	1.13e-14	66.2
MS.gene29459.t1	AT3G51850	31.852	135	92	0	3	137	358	492	1.24e-14	69.7
MS.gene29459.t1	AT1G76040	32.847	137	87	3	5	139	417	550	1.59e-14	69.7
MS.gene29459.t1	AT1G21550	32.667	150	80	4	3	137	9	152	2.99e-14	65.9
MS.gene29459.t1	AT1G18890	35.294	136	82	3	5	137	369	501	3.24e-14	68.6
MS.gene29459.t1	AT1G50700	30.864	162	79	3	5	137	379	536	6.76e-14	67.8
MS.gene29459.t1	AT3G01830	33.571	140	84	4	3	137	10	145	2.04e-13	63.5
MS.gene29459.t1	AT1G35670	33.094	139	83	5	5	139	332	464	9.85e-13	64.3
MS.gene29459.t1	AT4G14640	34.375	96	62	1	4	98	13	108	1.55e-12	60.5
MS.gene29459.t1	AT4G04710	33.835	133	87	1	5	137	324	455	1.63e-12	63.9
MS.gene29459.t1	AT4G04710	33.835	133	87	1	5	137	338	469	1.89e-12	63.5
MS.gene29459.t1	AT4G04710	33.835	133	87	1	5	137	351	482	2.08e-12	63.5
MS.gene29459.t1	AT4G09570	33.094	139	83	5	5	139	331	463	2.14e-12	63.5
MS.gene29459.t1	AT5G12480	29.851	134	93	1	5	137	271	404	5.57e-12	62.0
MS.gene29459.t1	AT5G23580	30.216	139	87	4	5	139	328	460	5.76e-12	62.0
MS.gene29459.t1	AT5G12480	29.851	134	93	1	5	137	365	498	6.03e-12	62.0
MS.gene29459.t1	AT3G10660	30.216	139	87	4	5	139	492	624	1.04e-11	61.6
MS.gene29459.t1	AT3G10660	30.216	139	87	4	5	139	492	624	1.04e-11	61.6
MS.gene29459.t1	AT3G57530	33.088	136	84	4	5	137	369	500	2.14e-11	60.5
MS.gene29459.t1	AT4G04710	33.333	135	87	2	5	137	351	484	5.44e-11	59.3
MS.gene29459.t1	AT5G04870	29.496	139	88	4	5	139	456	588	8.59e-11	58.9

Find 12 sgRNAs with CRISPR-Local

Find 17 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AGGTTCGGTGCAGTGAAAAT+CGG	0.467777	5.3:+64307392	None:intergenic
ATTAGTAATGTTGATGTTGA+CGG	0.468849	5.3:-64307228	MS.gene29459:CDS
AATGTTGATGTTGACGGTGA+TGG	0.518258	5.3:-64307222	MS.gene29459:CDS
CTGCACCGAACCTGGAAAAG+AGG	0.518774	5.3:-64307382	MS.gene29459:CDS
ATCAAAAGCATCACGAAGCT+CGG	0.520647	5.3:+64307353	None:intergenic
CGAAGAGTTCAAGAAGATGA+TGG	0.555496	5.3:-64307187	MS.gene29459:CDS
ATGGAAGAACTCGATCAAAA+CGG	0.574292	5.3:-64307444	MS.gene29459:CDS
CTTGCGCACTTCATCATCCA+TGG	0.574814	5.3:+64307578	None:intergenic
CTCTACGATCTTGATAAGAA+CGG	0.590565	5.3:-64307330	MS.gene29459:CDS
AGAAGAAGTGAAACGCATGA+TGG	0.599153	5.3:-64307463	MS.gene29459:CDS
AAAGAGATGCTGTTAACACT+CGG	0.667064	5.3:-64307501	MS.gene29459:CDS
GAACTCGATCAAAACGGTGA+CGG	0.687889	5.3:-64307438	MS.gene29459:CDS

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!	ATTAGTAATGTTGATGTTGA+CGG	-	chr5.3:64307527-64307546	MS.gene29459:CDS	25.0%
	TTCAGCAAATTCGACAAAAA+TGG	-	chr5.3:64307203-64307222	MS.gene29459:CDS	30.0%
	AAAGAGATGCTGTTAACACT+CGG	-	chr5.3:64307254-64307273	MS.gene29459:CDS	35.0%
	AAATTCGACAAAAATGGCGA+TGG	-	chr5.3:64307209-64307228	MS.gene29459:CDS	35.0%
	ATGGAAGAACTCGATCAAAA+CGG	-	chr5.3:64307311-64307330	MS.gene29459:CDS	35.0%
	CTCTACGATCTTGATAAGAA+CGG	-	chr5.3:64307425-64307444	MS.gene29459:CDS	35.0%
	AATGTTGATGTTGACGGTGA+TGG	-	chr5.3:64307533-64307552	MS.gene29459:CDS	40.0%
	AGAAGAAGTGAAACGCATGA+TGG	-	chr5.3:64307292-64307311	MS.gene29459:CDS	40.0%
	CGAAGAGTTCAAGAAGATGA+TGG	-	chr5.3:64307568-64307587	MS.gene29459:CDS	40.0%
!	AGAATCCTCTTTTCCAGGTT+CGG	+	chr5.3:64307381-64307400	None:intergenic	40.0%
!!	ATCAAAAGCATCACGAAGCT+CGG	+	chr5.3:64307405-64307424	None:intergenic	40.0%
!!!	CACGCTGTTTTGAAGAAACT+CGG	-	chr5.3:64307470-64307489	MS.gene29459:CDS	40.0%
	GAACTCGATCAAAACGGTGA+CGG	-	chr5.3:64307317-64307336	MS.gene29459:CDS	45.0%
!	TCGGTAGAATCCTCTTTTCC+AGG	+	chr5.3:64307386-64307405	None:intergenic	45.0%
!!	AGGTTCGGTGCAGTGAAAAT+CGG	+	chr5.3:64307366-64307385	None:intergenic	45.0%
!	GATTTTCACTGCACCGAACC+TGG	-	chr5.3:64307365-64307384	MS.gene29459:CDS	50.0%
	CTGCACCGAACCTGGAAAAG+AGG	-	chr5.3:64307373-64307392	MS.gene29459:CDS	55.0%

Chromosome	Type	Strat	End	Strand	Name
chr5.3	gene	64307179	64307598	64307179	ID=MS.gene29459
chr5.3	mRNA	64307179	64307598	64307179	ID=MS.gene29459.t1;Parent=MS.gene29459
chr5.3	exon	64307179	64307598	64307179	ID=MS.gene29459.t1.exon1;Parent=MS.gene29459.t1
chr5.3	CDS	64307179	64307598	64307179	ID=cds.MS.gene29459.t1;Parent=MS.gene29459.t1

Gene Sequence

>MS.gene29459

ATGGATGATGAAGTGCGCAAGATCTTCAGCAAATTCGACAAAAATGGCGATGGAAAAATCTCACGTTCAGAACTCAAAGAGATGCTGTTAACACTCGGATCAGAAACGACATCAGAAGAAGTGAAACGCATGATGGAAGAACTCGATCAAAACGGTGACGGTTTCATTGATCTGAAAGAATTCACCGATTTTCACTGCACCGAACCTGGAAAAGAGGATTCTACCGAGCTTCGTGATGCTTTTGATCTCTACGATCTTGATAAGAACGGTTTGATTTCTGCTAATGAATTGCACGCTGTTTTGAAGAAACTCGGTGAGAAATGCTCATTGAATGATTGTAAGAAGATGATTAGTAATGTTGATGTTGACGGTGATGGAAATGTTAACTTCGAAGAGTTCAAGAAGATGATGGCTCGCTGA

Protein sequence

>MS.gene29459.t1

MDDEVRKIFSKFDKNGDGKISRSELKEMLLTLGSETTSEEVKRMMEELDQNGDGFIDLKEFTDFHCTEPGKEDSTELRDAFDLYDLDKNGLISANELHAVLKKLGEKCSLNDCKKMISNVDVDGDGNVNFEEFKKMMAR