AlfalfaGEDB | MS.gene64310

M. sativa cultivar XinJiangDaYe / MS.gene64310

KEGG: K13448
GO: GO:0003674 GO:0005488 GO:0005509 GO:0043167 GO:0043169 GO:0046872
PFAM: PF13499.9

Nr:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene64310.t1	XP_013467196.1	77.5	142	31	1	1	141	1	142	5.30E-36	160.6

Swissprot:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene64310.t1	Q9LE22	45.3	137	70	1	3	139	22	153	2.6e-23	109.8

Trembl:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene64310.t1	A0A072VHE0	77.5	142	31	1	1	141	1	142	3.8e-36	160.6

TFs/TRs:

Gene ID	Type	Classification

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network:

Gene1	Gene2	correlation coefficient	p_value	FDR

PPI:

Gene1	Gene2	Type
MS.gene64310	MS.gene71207	PPI
MS.gene038456	MS.gene64310	PPI
MS.gene000724	MS.gene64310	PPI
MS.gene64310	MS.gene35562	PPI
MS.gene74452	MS.gene64310	PPI
MS.gene060446	MS.gene64310	PPI
MS.gene036602	MS.gene64310	PPI
MS.gene008831	MS.gene64310	PPI
MS.gene96913	MS.gene64310	PPI
MS.gene009021	MS.gene64310	PPI
MS.gene46237	MS.gene64310	PPI
MS.gene64310	MS.gene21696	PPI
MS.gene64310	MS.gene64316	PPI
MS.gene64310	MS.gene29793	PPI
MS.gene64310	MS.gene98294	PPI
MS.gene98294	MS.gene64310	PPI
MS.gene98295	MS.gene64310	PPI
MS.gene64310	MS.gene074045	PPI
MS.gene02545	MS.gene64310	PPI
MS.gene053319	MS.gene64310	PPI
MS.gene04915	MS.gene64310	PPI
MS.gene61009	MS.gene64310	PPI
MS.gene64327	MS.gene64310	PPI
MS.gene074100	MS.gene64310	PPI
MS.gene64310	MS.gene64317	PPI
MS.gene065998	MS.gene64310	PPI
MS.gene026618	MS.gene64310	PPI
MS.gene001381	MS.gene64310	PPI
MS.gene64316	MS.gene64310	PPI
MS.gene074045	MS.gene64310	PPI
MS.gene68345	MS.gene64310	PPI
MS.gene036930	MS.gene64310	PPI
MS.gene89216	MS.gene64310	PPI
MS.gene001246	MS.gene64310	PPI
MS.gene62258	MS.gene64310	PPI
MS.gene55545	MS.gene64310	PPI
MS.gene64310	MS.gene057293	PPI
MS.gene64311	MS.gene64310	PPI
MS.gene64310	MS.gene79028	PPI
MS.gene27879	MS.gene64310	PPI
MS.gene040331	MS.gene64310	PPI
MS.gene58906	MS.gene64310	PPI
MS.gene64308	MS.gene64310	PPI
MS.gene58860	MS.gene64310	PPI
MS.gene64310	MS.gene98295	PPI
MS.gene64313	MS.gene64310	PPI
MS.gene93087	MS.gene64310	PPI
MS.gene27516	MS.gene64310	PPI
MS.gene49270	MS.gene64310	PPI
MS.gene97948	MS.gene64310	PPI
MS.gene64310	MS.gene85596	PPI
MS.gene000738	MS.gene64310	PPI
MS.gene64307	MS.gene64310	PPI
MS.gene53465	MS.gene64310	PPI
MS.gene62540	MS.gene64310	PPI
MS.gene64310	MS.gene025797	PPI
MS.gene061261	MS.gene64310	PPI
MS.gene64310	MS.gene21931	PPI
MS.gene022456	MS.gene64310	PPI
MS.gene04917	MS.gene64310	PPI
MS.gene64310	MS.gene64314	PPI
MS.gene64310	MS.gene09960	PPI
MS.gene062239	MS.gene64310	PPI
MS.gene46886	MS.gene64310	PPI
MS.gene47195	MS.gene64310	PPI
MS.gene013748	MS.gene64310	PPI
MS.gene64310	MS.gene80714	PPI
MS.gene023648	MS.gene64310	PPI
MS.gene64310	MS.gene53650	PPI
MS.gene03228	MS.gene64310	PPI
MS.gene96914	MS.gene64310	PPI
MS.gene28338	MS.gene64310	PPI
MS.gene85596	MS.gene64310	PPI
MS.gene94551	MS.gene64310	PPI
MS.gene65954	MS.gene64310	PPI
MS.gene008225	MS.gene64310	PPI
MS.gene027655	MS.gene64310	PPI
MS.gene64310	MS.gene057167	PPI
MS.gene056383	MS.gene64310	PPI
MS.gene64310	MS.gene93763	PPI
MS.gene011400	MS.gene64310	PPI
MS.gene015470	MS.gene64310	PPI
MS.gene64310	MS.gene026940	PPI
MS.gene024717	MS.gene64310	PPI
MS.gene22553	MS.gene64310	PPI
MS.gene53662	MS.gene64310	PPI
MS.gene64310	MS.gene29794	PPI
MS.gene35563	MS.gene64310	PPI
MS.gene55496	MS.gene64310	PPI
MS.gene003880	MS.gene64310	PPI
MS.gene54637	MS.gene64310	PPI
MS.gene49271	MS.gene64310	PPI
MS.gene67281	MS.gene64310	PPI
MS.gene64310	MS.gene71511	PPI
MS.gene64310	MS.gene033361	PPI
MS.gene025777	MS.gene64310	PPI
MS.gene64310	MS.gene53659	PPI
MS.gene64324	MS.gene64310	PPI
MS.gene64310	MS.gene061768	PPI
MS.gene64310	MS.gene89216	PPI
MS.gene026940	MS.gene64310	PPI
MS.gene21155	MS.gene64310	PPI
MS.gene71207	MS.gene64310	PPI
MS.gene92775	MS.gene64310	PPI
MS.gene004899	MS.gene64310	PPI
MS.gene07422	MS.gene64310	PPI
MS.gene09934	MS.gene64310	PPI
MS.gene96922	MS.gene64310	PPI
MS.gene21932	MS.gene64310	PPI
MS.gene47134	MS.gene64310	PPI
MS.gene022455	MS.gene64310	PPI
MS.gene87673	MS.gene64310	PPI
MS.gene29793	MS.gene64310	PPI
MS.gene05284	MS.gene64310	PPI
MS.gene21931	MS.gene64310	PPI
MS.gene041795	MS.gene64310	PPI
MS.gene046988	MS.gene64310	PPI
MS.gene63000	MS.gene64310	PPI
MS.gene057293	MS.gene64310	PPI
MS.gene63281	MS.gene64310	PPI
MS.gene29794	MS.gene64310	PPI
MS.gene53648	MS.gene64310	PPI
MS.gene017446	MS.gene64310	PPI
MS.gene44354	MS.gene64310	PPI
MS.gene033361	MS.gene64310	PPI
MS.gene64310	MS.gene056461	PPI
MS.gene040127	MS.gene64310	PPI
MS.gene64310	MS.gene29459	PPI
MS.gene53659	MS.gene64310	PPI

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene64310.t1	MTR_1g046950	80.986	142	26	1	1	141	1	142	1.83e-78	228
MS.gene64310.t1	MTR_1g047100	82.143	140	25	0	1	140	1	140	1.38e-77	226
MS.gene64310.t1	MTR_5g079340	71.429	140	38	1	1	140	1	138	9.16e-67	199
MS.gene64310.t1	MTR_3g067610	61.871	139	48	1	3	141	4	137	8.86e-60	181
MS.gene64310.t1	MTR_5g008705	72.093	129	35	1	12	140	2	129	6.07e-59	179
MS.gene64310.t1	MTR_5g008695	72.174	115	31	1	28	141	1	115	6.37e-53	163
MS.gene64310.t1	MTR_8g107110	56.934	137	57	2	3	139	23	157	9.91e-49	154
MS.gene64310.t1	MTR_6g079570	53.957	139	61	3	3	140	25	161	5.62e-45	145
MS.gene64310.t1	MTR_1g032070	45.324	139	71	2	3	139	45	180	3.89e-37	125
MS.gene64310.t1	MTR_8g105230	40.741	135	75	2	4	136	36	167	2.03e-32	113
MS.gene64310.t1	MTR_4g067270	43.165	139	76	2	3	139	4	141	2.08e-32	112
MS.gene64310.t1	MTR_6g023460	42.647	136	68	2	8	139	12	141	1.78e-31	109
MS.gene64310.t1	MTR_7g089760	44.928	138	73	2	4	139	5	141	1.89e-31	110
MS.gene64310.t1	MTR_8g036075	45.455	143	71	3	4	139	49	191	2.27e-31	111
MS.gene64310.t1	MTR_7g075040	42.177	147	77	4	1	139	44	190	4.35e-29	105
MS.gene64310.t1	MTR_5g088320	38.235	136	83	1	4	139	12	146	9.65e-28	100
MS.gene64310.t1	MTR_5g088320	45.312	64	35	0	78	141	12	75	7.48e-13	62.0
MS.gene64310.t1	MTR_6g025320	38.235	136	83	1	4	139	12	146	9.97e-28	100
MS.gene64310.t1	MTR_6g025320	45.312	64	35	0	78	141	12	75	8.23e-13	62.0
MS.gene64310.t1	MTR_7g087610	37.500	136	84	1	4	139	12	146	1.05e-27	100
MS.gene64310.t1	MTR_7g087610	45.312	64	35	0	78	141	12	75	1.14e-12	61.6
MS.gene64310.t1	MTR_1g041285	38.235	136	83	1	4	139	12	146	1.10e-27	100
MS.gene64310.t1	MTR_1g041285	44.615	65	36	0	77	141	11	75	2.12e-11	58.2
MS.gene64310.t1	MTR_1g076650	39.552	134	80	1	6	139	14	146	2.60e-27	99.4
MS.gene64310.t1	MTR_1g076650	44.615	65	36	0	77	141	11	75	1.13e-11	58.9
MS.gene64310.t1	MTR_4g086260	39.568	139	81	1	3	141	56	191	4.85e-27	100
MS.gene64310.t1	MTR_3g089070	38.235	136	74	2	8	139	10	139	5.85e-26	95.5
MS.gene64310.t1	MTR_3g089090	38.235	136	74	2	8	139	9	138	6.28e-26	95.5
MS.gene64310.t1	MTR_4g115170	38.312	154	78	2	3	139	63	216	1.40e-25	97.1
MS.gene64310.t1	MTR_5g017510	40.288	139	78	3	3	139	47	182	3.64e-25	95.1
MS.gene64310.t1	MTR_5g017510	39.437	71	43	0	2	72	119	189	7.28e-11	57.8
MS.gene64310.t1	MTR_5g017560	40.288	139	78	3	3	139	47	182	3.64e-25	95.1
MS.gene64310.t1	MTR_5g017560	39.437	71	43	0	2	72	119	189	7.28e-11	57.8
MS.gene64310.t1	MTR_4g112460	32.857	140	93	1	3	141	10	149	2.55e-24	92.4
MS.gene64310.t1	MTR_4g103650	36.429	140	79	2	4	139	2	135	3.88e-24	90.9
MS.gene64310.t1	MTR_1g046960	74.576	59	15	0	28	86	1	59	4.90e-24	89.7
MS.gene64310.t1	MTR_5g017550	37.956	137	83	1	3	139	47	181	5.62e-24	92.0
MS.gene64310.t1	MTR_5g017550	40.845	71	42	0	2	72	118	188	3.37e-11	58.5
MS.gene64310.t1	MTR_2g098890	39.286	140	82	2	3	139	63	202	9.12e-24	92.0
MS.gene64310.t1	MTR_4g103630	36.429	140	79	2	4	139	6	139	1.31e-23	89.7
MS.gene64310.t1	MTR_4g103655	35.714	140	80	2	4	139	6	139	5.60e-23	88.2
MS.gene64310.t1	MTR_8g066630	31.884	138	92	1	4	139	17	154	1.10e-22	87.8
MS.gene64310.t1	MTR_7g074240	38.776	147	77	4	5	139	25	170	1.93e-22	87.8
MS.gene64310.t1	MTR_7g090450	35.714	140	86	3	4	139	73	212	2.79e-22	88.2
MS.gene64310.t1	MTR_1g071150	35.294	136	86	1	4	139	12	145	6.21e-22	85.5
MS.gene64310.t1	MTR_0168s0120	36.937	111	69	1	29	139	1	110	9.11e-21	81.6
MS.gene64310.t1	MTR_6g025320	36.937	111	69	1	29	139	1	110	9.11e-21	81.6
MS.gene64310.t1	MTR_3g083470	33.571	140	80	3	1	139	90	217	2.98e-20	83.2
MS.gene64310.t1	MTR_8g078270	31.387	137	91	2	5	140	54	188	7.31e-20	81.3
MS.gene64310.t1	MTR_8g069915	29.861	144	97	2	2	141	7	150	6.09e-19	78.6
MS.gene64310.t1	MTR_6g007613	32.609	138	92	1	4	141	29	165	6.50e-19	78.6
MS.gene64310.t1	MTR_5g089320	35.971	139	82	3	5	141	374	507	9.09e-19	81.6
MS.gene64310.t1	MTR_7g115040	33.588	131	86	1	9	139	17	146	1.31e-18	77.0
MS.gene64310.t1	MTR_5g027000	32.558	129	84	2	9	136	27	153	1.38e-18	77.4
MS.gene64310.t1	MTR_5g009830	36.620	142	77	4	5	141	372	505	3.11e-18	80.1
MS.gene64310.t1	MTR_1g030440	33.562	146	82	2	3	139	21	160	6.95e-18	75.5
MS.gene64310.t1	MTR_7g074020	30.882	136	93	1	4	139	30	164	1.35e-17	75.1
MS.gene64310.t1	MTR_8g099095	35.915	142	78	4	5	141	372	505	2.06e-17	77.8
MS.gene64310.t1	MTR_0028s0170	34.532	139	84	3	5	141	384	517	5.69e-17	76.6
MS.gene64310.t1	MTR_3g051770	35.862	145	77	3	5	139	389	527	1.21e-16	75.5
MS.gene64310.t1	MTR_5g092810	35.714	140	77	4	5	139	398	529	3.39e-16	74.3
MS.gene64310.t1	MTR_4g132070	34.043	141	78	4	5	139	397	528	6.54e-16	73.6
MS.gene64310.t1	MTR_5g079470	59.649	57	22	1	8	64	14	69	1.93e-15	67.0
MS.gene64310.t1	MTR_3g088655	30.667	150	87	4	4	139	8	154	2.34e-15	68.9
MS.gene64310.t1	MTR_1g026190	33.094	139	86	3	5	141	388	521	7.77e-15	70.5
MS.gene64310.t1	MTR_5g011850	29.861	144	94	4	2	141	7	147	9.04e-15	67.0
MS.gene64310.t1	MTR_6g007613	30.833	120	82	1	4	123	29	147	2.69e-14	66.2
MS.gene64310.t1	MTR_7g068710	30.657	137	93	1	3	139	360	494	4.78e-14	68.2
MS.gene64310.t1	MTR_7g074020	29.167	120	84	1	4	123	30	148	9.94e-14	64.7
MS.gene64310.t1	MTR_7g091890	34.351	131	84	1	9	139	368	496	1.29e-13	67.0
MS.gene64310.t1	MTR_4g107490	32.353	136	88	3	5	139	379	511	2.07e-13	66.2
MS.gene64310.t1	MTR_5g022030	30.882	136	83	5	9	139	411	540	1.82e-12	63.5
MS.gene64310.t1	MTR_8g096050	28.986	138	91	1	2	139	53	183	7.34e-12	62.0
MS.gene64310.t1	MTR_4g132040	34.286	140	79	5	5	139	401	532	7.58e-12	62.0
MS.gene64310.t1	MTR_3g098460	28.676	136	90	1	4	139	33	161	1.44e-11	61.2
MS.gene64310.t1	MTR_3g055570	28.467	137	82	1	4	140	52	172	2.33e-11	58.9
MS.gene64310.t1	MTR_4g066660	30.216	139	90	3	3	139	376	509	3.62e-11	60.1

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene64310.t1	AT1G18210	53.623	138	59	2	3	140	22	154	1.15e-46	149
MS.gene64310.t1	AT1G18210	53.623	138	59	2	3	140	22	154	1.15e-46	149
MS.gene64310.t1	AT1G73630	52.518	139	61	2	2	140	18	151	2.32e-45	145
MS.gene64310.t1	AT1G66400	48.551	138	70	1	3	139	14	151	2.69e-43	140
MS.gene64310.t1	AT5G37770	48.936	141	69	3	3	140	16	156	7.99e-41	134
MS.gene64310.t1	AT5G37770	48.936	141	69	3	3	140	16	156	7.99e-41	134
MS.gene64310.t1	AT1G24620	43.885	139	73	2	4	140	37	172	1.79e-34	119
MS.gene64310.t1	AT5G17470	44.286	140	71	3	5	140	3	139	4.97e-34	116
MS.gene64310.t1	AT1G05990	42.754	138	77	1	4	139	5	142	3.18e-33	114
MS.gene64310.t1	AT3G07490	47.101	138	70	2	4	139	5	141	8.62e-33	113
MS.gene64310.t1	AT2G15680	43.478	138	75	1	3	140	49	183	1.14e-32	114
MS.gene64310.t1	AT2G36180	45.588	136	68	2	8	139	4	137	3.57e-32	111
MS.gene64310.t1	AT4G03290	40.141	142	81	2	4	141	5	146	3.85e-30	106
MS.gene64310.t1	AT4G12860	42.029	138	77	2	4	139	5	141	1.52e-28	102
MS.gene64310.t1	AT2G43290	40.141	142	79	2	4	139	65	206	3.20e-28	103
MS.gene64310.t1	AT5G37780	38.235	136	83	1	4	139	12	146	3.57e-28	101
MS.gene64310.t1	AT5G37780	43.750	64	36	0	78	141	12	75	3.06e-12	60.5
MS.gene64310.t1	AT1G66410	38.235	136	83	1	4	139	12	146	3.57e-28	101
MS.gene64310.t1	AT1G66410	43.750	64	36	0	78	141	12	75	3.06e-12	60.5
MS.gene64310.t1	AT5G21274	38.971	136	82	1	4	139	12	146	4.29e-28	101
MS.gene64310.t1	AT5G21274	45.312	64	35	0	78	141	12	75	8.44e-13	62.0
MS.gene64310.t1	AT3G56800	38.235	136	83	1	4	139	12	146	1.00e-27	100
MS.gene64310.t1	AT3G56800	45.312	64	35	0	78	141	12	75	8.26e-13	62.0
MS.gene64310.t1	AT2G27030	38.235	136	83	1	4	139	12	146	1.00e-27	100
MS.gene64310.t1	AT2G27030	45.312	64	35	0	78	141	12	75	8.26e-13	62.0
MS.gene64310.t1	AT2G41110	38.235	136	83	1	4	139	12	146	1.00e-27	100
MS.gene64310.t1	AT2G41110	45.312	64	35	0	78	141	12	75	8.26e-13	62.0
MS.gene64310.t1	AT3G43810	38.235	136	83	1	4	139	12	146	1.04e-27	100
MS.gene64310.t1	AT3G43810	45.312	64	35	0	78	141	12	75	8.62e-13	62.0
MS.gene64310.t1	AT3G59440	39.855	138	79	2	4	139	51	186	1.36e-27	101
MS.gene64310.t1	AT2G27030	38.235	136	83	1	4	139	12	146	2.65e-27	100
MS.gene64310.t1	AT2G27030	45.312	64	35	0	78	141	12	75	1.78e-12	62.0
MS.gene64310.t1	AT3G03400	39.683	126	75	1	8	132	9	134	2.71e-27	99.0
MS.gene64310.t1	AT3G43810	38.235	136	83	1	4	139	12	146	9.29e-27	99.8
MS.gene64310.t1	AT3G43810	45.312	64	35	0	78	141	12	75	2.45e-12	62.0
MS.gene64310.t1	AT3G10190	39.855	138	79	3	4	139	70	205	2.11e-26	99.0
MS.gene64310.t1	AT3G22930	37.500	136	84	1	4	139	35	169	4.75e-26	97.1
MS.gene64310.t1	AT4G37010	36.957	138	86	1	4	141	27	163	8.32e-26	96.3
MS.gene64310.t1	AT4G37010	36.957	138	86	1	4	141	31	167	8.91e-26	96.3
MS.gene64310.t1	AT4G14640	37.500	136	84	1	4	139	13	147	3.82e-25	94.0
MS.gene64310.t1	AT2G41110	35.135	148	83	2	4	139	12	158	2.22e-24	92.4
MS.gene64310.t1	AT5G37780	34.437	151	83	2	4	139	12	161	5.42e-24	91.3
MS.gene64310.t1	AT2G41100	37.908	153	80	3	4	141	12	164	5.45e-24	94.7
MS.gene64310.t1	AT2G41100	35.294	153	83	2	4	140	101	253	3.05e-23	92.8
MS.gene64310.t1	AT2G41100	37.908	153	80	3	4	141	12	164	5.45e-24	94.7
MS.gene64310.t1	AT2G41100	35.294	153	83	2	4	140	101	253	3.05e-23	92.8
MS.gene64310.t1	AT2G41100	35.294	153	83	2	4	140	66	218	1.66e-23	92.8
MS.gene64310.t1	AT2G41100	34.884	129	69	3	28	141	1	129	6.73e-16	72.8
MS.gene64310.t1	AT2G41100	35.294	153	83	2	4	140	66	218	1.66e-23	92.8
MS.gene64310.t1	AT2G41100	34.884	129	69	3	28	141	1	129	6.73e-16	72.8
MS.gene64310.t1	AT2G41100	35.294	153	83	2	4	140	66	218	1.66e-23	92.8
MS.gene64310.t1	AT2G41100	34.884	129	69	3	28	141	1	129	6.73e-16	72.8
MS.gene64310.t1	AT5G37780	36.885	122	76	1	18	139	13	133	8.60e-23	87.4
MS.gene64310.t1	AT1G66410	36.885	122	76	1	18	139	36	156	1.48e-22	87.4
MS.gene64310.t1	AT3G50360	32.609	138	92	1	4	141	27	163	2.07e-22	87.4
MS.gene64310.t1	AT5G37780	36.885	122	76	1	18	139	52	172	2.24e-22	87.4
MS.gene64310.t1	AT5G42380	34.307	137	90	0	3	139	48	184	3.73e-22	87.0
MS.gene64310.t1	AT1G32250	32.394	142	91	2	3	139	15	156	4.66e-22	86.7
MS.gene64310.t1	AT1G18530	30.345	145	97	2	1	141	1	145	5.23e-22	86.3
MS.gene64310.t1	AT4G20780	35.065	154	81	2	5	139	30	183	1.84e-21	85.5
MS.gene64310.t1	AT1G66410	36.937	111	69	1	29	139	1	110	3.60e-21	82.8
MS.gene64310.t1	AT1G66410	36.937	111	69	1	29	139	1	110	3.60e-21	82.8
MS.gene64310.t1	AT3G50770	30.986	142	94	2	3	140	63	204	6.47e-21	84.3
MS.gene64310.t1	AT3G43810	36.937	111	69	1	29	139	1	110	9.54e-21	81.6
MS.gene64310.t1	AT3G43810	36.937	111	69	1	29	139	1	110	9.54e-21	81.6
MS.gene64310.t1	AT1G76650	34.559	136	87	1	4	139	43	176	1.03e-20	83.2
MS.gene64310.t1	AT1G76650	34.559	136	87	1	4	139	43	176	1.03e-20	83.2
MS.gene64310.t1	AT1G76640	34.307	137	89	1	4	139	22	158	1.83e-20	82.0
MS.gene64310.t1	AT4G14640	36.066	122	77	1	18	139	9	129	2.01e-20	81.3
MS.gene64310.t1	AT2G41090	35.294	136	84	2	4	139	12	143	2.93e-20	82.4
MS.gene64310.t1	AT2G41410	33.094	139	91	2	4	140	70	208	3.48e-20	82.8
MS.gene64310.t1	AT3G25600	28.777	139	98	1	4	141	12	150	4.69e-19	78.6
MS.gene64310.t1	AT3G51920	29.787	141	95	2	2	139	7	146	9.45e-19	77.4
MS.gene64310.t1	AT4G23650	35.915	142	78	4	5	141	384	517	1.10e-18	81.6
MS.gene64310.t1	AT1G76650	34.559	136	77	2	4	139	43	166	1.20e-18	77.8
MS.gene64310.t1	AT5G44460	34.932	146	84	2	5	139	29	174	1.90e-18	77.4
MS.gene64310.t1	AT4G04695	35.556	135	84	2	5	139	337	468	4.22e-18	79.7
MS.gene64310.t1	AT1G21550	35.333	150	78	4	3	139	9	152	1.07e-17	75.1
MS.gene64310.t1	AT5G19360	35.971	139	82	3	5	141	374	507	2.00e-17	77.8
MS.gene64310.t1	AT3G03410	29.104	134	85	1	6	139	4	127	7.30e-17	72.0
MS.gene64310.t1	AT4G04700	34.307	137	83	3	5	139	337	468	8.36e-17	76.3
MS.gene64310.t1	AT5G12180	35.252	139	83	3	5	141	379	512	1.08e-16	75.9
MS.gene64310.t1	AT3G51850	32.117	137	91	1	3	139	358	492	1.83e-16	75.1
MS.gene64310.t1	AT1G61950	35.417	144	72	4	5	139	405	536	4.86e-16	73.9
MS.gene64310.t1	AT4G04740	35.036	137	82	3	5	139	374	505	5.66e-16	73.9
MS.gene64310.t1	AT4G04740	35.036	137	82	3	5	139	374	505	5.66e-16	73.9
MS.gene64310.t1	AT4G04740	35.036	137	82	3	5	139	374	505	5.66e-16	73.9
MS.gene64310.t1	AT4G04740	35.036	137	82	3	5	139	374	505	5.66e-16	73.9
MS.gene64310.t1	AT4G04740	35.036	137	82	3	5	139	374	505	5.66e-16	73.9
MS.gene64310.t1	AT4G04740	35.036	137	82	3	5	139	374	505	5.66e-16	73.9
MS.gene64310.t1	AT3G03000	31.884	138	82	2	4	135	20	151	7.65e-16	70.5
MS.gene64310.t1	AT3G01830	32.857	140	87	5	3	139	10	145	9.07e-16	69.7
MS.gene64310.t1	AT3G20410	37.143	140	75	5	5	139	397	528	9.81e-16	73.2
MS.gene64310.t1	AT3G20410	37.143	140	75	5	5	139	397	528	9.81e-16	73.2
MS.gene64310.t1	AT1G50700	36.429	140	76	5	5	139	379	510	1.00e-15	73.2
MS.gene64310.t1	AT4G04720	35.036	137	82	3	5	139	385	516	1.32e-15	72.8
MS.gene64310.t1	AT4G04720	35.036	137	82	3	5	139	385	516	1.32e-15	72.8
MS.gene64310.t1	AT4G21940	36.364	143	72	5	5	139	407	538	1.50e-15	72.4
MS.gene64310.t1	AT4G21940	36.364	143	72	5	5	139	407	538	1.63e-15	72.4
MS.gene64310.t1	AT5G17480	59.649	57	22	1	8	64	13	68	2.41e-15	67.0
MS.gene64310.t1	AT2G41100	32.540	126	69	2	31	140	3	128	2.94e-15	69.7
MS.gene64310.t1	AT1G74740	37.500	136	81	3	5	139	365	497	1.22e-14	70.1
MS.gene64310.t1	AT1G62820	29.861	144	94	4	2	141	8	148	1.91e-14	66.2
MS.gene64310.t1	AT1G12310	29.861	144	94	4	2	141	8	148	2.24e-14	66.2
MS.gene64310.t1	AT1G76040	34.507	142	80	4	5	141	179	312	7.12e-14	67.4
MS.gene64310.t1	AT1G76040	34.507	142	80	4	5	141	179	312	7.12e-14	67.4
MS.gene64310.t1	AT5G66210	31.915	141	85	4	4	139	369	503	9.73e-14	67.4
MS.gene64310.t1	AT5G66210	31.915	141	85	4	4	139	369	503	9.73e-14	67.4
MS.gene64310.t1	AT1G76040	34.507	142	80	4	5	141	417	550	1.10e-13	67.4
MS.gene64310.t1	AT3G03430	49.254	67	29	2	8	74	13	74	7.92e-13	60.5
MS.gene64310.t1	AT4G04710	33.333	141	79	4	5	139	351	482	8.47e-13	64.7
MS.gene64310.t1	AT4G04710	33.333	141	79	4	5	139	338	469	8.51e-13	64.7
MS.gene64310.t1	AT4G04710	33.333	141	79	4	5	139	324	455	9.13e-13	64.7
MS.gene64310.t1	AT3G57530	33.088	136	86	3	5	139	369	500	9.38e-13	64.7
MS.gene64310.t1	AT4G36070	30.282	142	88	5	3	139	377	512	9.55e-13	64.7
MS.gene64310.t1	AT1G18890	34.783	138	82	4	5	139	369	501	9.77e-13	64.3
MS.gene64310.t1	AT4G36070	30.282	142	88	5	3	139	377	512	9.82e-13	64.3
MS.gene64310.t1	AT2G17890	29.932	147	80	5	4	139	415	549	1.33e-12	63.9
MS.gene64310.t1	AT5G51050	29.710	138	90	1	2	139	49	179	1.68e-12	63.9
MS.gene64310.t1	AT3G22930	33.333	96	63	1	4	99	35	129	1.85e-12	60.8
MS.gene64310.t1	AT2G41860	31.111	135	91	1	5	139	360	492	1.87e-12	63.5
MS.gene64310.t1	AT2G41860	31.111	135	91	1	5	139	360	492	2.09e-12	63.5
MS.gene64310.t1	AT3G10660	30.769	143	83	4	5	141	492	624	4.27e-12	62.8
MS.gene64310.t1	AT3G10660	30.769	143	83	4	5	141	492	624	4.27e-12	62.8
MS.gene64310.t1	AT5G04870	30.769	143	83	4	5	141	456	588	5.94e-12	62.4
MS.gene64310.t1	AT5G07320	27.407	135	91	1	5	139	38	165	5.97e-12	62.4
MS.gene64310.t1	AT1G35670	32.624	141	83	4	5	141	332	464	1.10e-11	61.6
MS.gene64310.t1	AT4G04710	32.867	143	79	5	5	139	351	484	1.32e-11	61.2
MS.gene64310.t1	AT5G12480	30.882	136	91	2	5	139	365	498	1.37e-11	61.2
MS.gene64310.t1	AT5G12480	30.882	136	91	2	5	139	271	404	1.38e-11	61.2
MS.gene64310.t1	AT4G09570	32.624	141	83	4	5	141	331	463	1.40e-11	61.2
MS.gene64310.t1	AT1G50700	30.723	166	76	6	5	139	379	536	2.46e-11	60.5
MS.gene64310.t1	AT4G14640	31.959	97	65	1	4	100	13	108	7.13e-11	56.2
MS.gene64310.t1	AT3G51850	32.990	97	63	1	3	99	358	452	8.42e-11	58.9
MS.gene64310.t1	AT2G17290	31.206	141	85	4	5	141	391	523	9.39e-11	58.9
MS.gene64310.t1	AT2G17290	31.206	141	85	4	5	141	391	523	9.39e-11	58.9

Find 31 sgRNAs with CRISPR-Local

Find 29 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
TACTTCATCAGAGGTCGATT+TGG	0.331853	1.3:-28550061	None:intergenic
AACTATGCTGCTGCTGCCAC+TGG	0.375884	1.3:+28550159	MS.gene64310:CDS
GAACAAATGCTTTCGACGCT+TGG	0.406787	1.3:+28550036	MS.gene64310:CDS
AAAGATCTCTGTCTCGGAAC+TGG	0.409847	1.3:+28550014	MS.gene64310:CDS
CACATCGTTCTTAACAAACT+TGG	0.425233	1.3:+28550258	MS.gene64310:CDS
TGCTGCTGCCACTGGGAATG+AGG	0.519298	1.3:+28550167	MS.gene64310:CDS
ACTATGCTGCTGCTGCCACT+GGG	0.526686	1.3:+28550160	MS.gene64310:CDS
TGAGGAGTTCAAGAAGATGA+TGG	0.534080	1.3:+28550356	MS.gene64310:CDS
GCTACGCACCTCGTCGTCCA+TGG	0.547679	1.3:-28549959	None:intergenic
AAGTTTGACAAGAACGGTGA+TGG	0.550047	1.3:+28549991	MS.gene64310:CDS
AAGGTTGACGCGGATGGAGA+TGG	0.551637	1.3:+28550321	MS.gene64310:CDS
ATAAGCAAGGTTGACGCGGA+TGG	0.557348	1.3:+28550315	MS.gene64310:CDS
TGATGAAGTAAAGCAACTGA+TGG	0.558985	1.3:+28550074	MS.gene64310:CDS
AGATGGAAAAGTTAACTTTG+AGG	0.561239	1.3:+28550338	MS.gene64310:CDS
CGTCCTTGTCAAAGTCGTAA+AGG	0.570205	1.3:-28550212	None:intergenic
TTCAACAAGTTTGACAAGAA+CGG	0.572048	1.3:+28549985	MS.gene64310:CDS
CAGCAGCAGCATAGTTGCAG+TGG	0.580581	1.3:-28550152	None:intergenic
TGATGGAAAGATCTCTGTCT+CGG	0.582706	1.3:+28550008	MS.gene64310:CDS
CAGTTGCTTTACTTCATCAG+AGG	0.584243	1.3:-28550070	None:intergenic
AGAACGATGTGCAGTTCTGT+GGG	0.590061	1.3:-28550246	None:intergenic
CGACCTTTACGACTTTGACA+AGG	0.592381	1.3:+28550209	MS.gene64310:CDS
CATATTGATCAGAATGGTGA+CGG	0.608042	1.3:+28550099	MS.gene64310:CDS
ATGGAACATATTGATCAGAA+TGG	0.615513	1.3:+28550093	MS.gene64310:CDS
CATTCTCTGACAATCACTGA+GGG	0.618753	1.3:-28550292	None:intergenic
AAGAACGATGTGCAGTTCTG+TGG	0.629284	1.3:-28550247	None:intergenic
CTTTACGACTTTGACAAGGA+CGG	0.629478	1.3:+28550213	MS.gene64310:CDS
AATGATAAGCAAGGTTGACG+CGG	0.647152	1.3:+28550311	MS.gene64310:CDS
CAACTACGCCATGGACGACG+AGG	0.653695	1.3:+28549951	None:intergenic
TTGTCAGAGAATGATAAGCA+AGG	0.687328	1.3:+28550302	MS.gene64310:CDS
TCATTCTCTGACAATCACTG+AGG	0.714288	1.3:-28550293	None:intergenic
AATCTCGACCTCATTCCCAG+TGG	0.761213	1.3:-28550175	None:intergenic

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
	AGATGGAAAAGTTAACTTTG+AGG	+	chr1.3:28550338-28550357	MS.gene64310:CDS	30.0%
	ATGGAACATATTGATCAGAA+TGG	+	chr1.3:28550093-28550112	MS.gene64310:CDS	30.0%
	TTCAACAAGTTTGACAAGAA+CGG	+	chr1.3:28549985-28550004	MS.gene64310:CDS	30.0%
	CACATCGTTCTTAACAAACT+TGG	+	chr1.3:28550258-28550277	MS.gene64310:CDS	35.0%
	CATATTGATCAGAATGGTGA+CGG	+	chr1.3:28550099-28550118	MS.gene64310:CDS	35.0%
	TGATGAAGTAAAGCAACTGA+TGG	+	chr1.3:28550074-28550093	MS.gene64310:CDS	35.0%
	TTGTCAGAGAATGATAAGCA+AGG	+	chr1.3:28550302-28550321	MS.gene64310:CDS	35.0%
	AAGTTTGACAAGAACGGTGA+TGG	+	chr1.3:28549991-28550010	MS.gene64310:CDS	40.0%
	AATGATAAGCAAGGTTGACG+CGG	+	chr1.3:28550311-28550330	MS.gene64310:CDS	40.0%
	CATTCTCTGACAATCACTGA+GGG	-	chr1.3:28550295-28550314	None:intergenic	40.0%
	CTTTACGACTTTGACAAGGA+CGG	+	chr1.3:28550213-28550232	MS.gene64310:CDS	40.0%
	TACTTCATCAGAGGTCGATT+TGG	-	chr1.3:28550064-28550083	None:intergenic	40.0%
	TCATTCTCTGACAATCACTG+AGG	-	chr1.3:28550296-28550315	None:intergenic	40.0%
	TGAGGAGTTCAAGAAGATGA+TGG	+	chr1.3:28550356-28550375	MS.gene64310:CDS	40.0%
	TGATGGAAAGATCTCTGTCT+CGG	+	chr1.3:28550008-28550027	MS.gene64310:CDS	40.0%
!	CAGTTGCTTTACTTCATCAG+AGG	-	chr1.3:28550073-28550092	None:intergenic	40.0%
	AAAGATCTCTGTCTCGGAAC+TGG	+	chr1.3:28550014-28550033	MS.gene64310:CDS	45.0%
	AAGAACGATGTGCAGTTCTG+TGG	-	chr1.3:28550250-28550269	None:intergenic	45.0%
	AGAACGATGTGCAGTTCTGT+GGG	-	chr1.3:28550249-28550268	None:intergenic	45.0%
	CGACCTTTACGACTTTGACA+AGG	+	chr1.3:28550209-28550228	MS.gene64310:CDS	45.0%
	CGTCCTTGTCAAAGTCGTAA+AGG	-	chr1.3:28550215-28550234	None:intergenic	45.0%
	GAACAAATGCTTTCGACGCT+TGG	+	chr1.3:28550036-28550055	MS.gene64310:CDS	45.0%
	AATCTCGACCTCATTCCCAG+TGG	-	chr1.3:28550178-28550197	None:intergenic	50.0%
	ATAAGCAAGGTTGACGCGGA+TGG	+	chr1.3:28550315-28550334	MS.gene64310:CDS	50.0%
	AACTATGCTGCTGCTGCCAC+TGG	+	chr1.3:28550159-28550178	MS.gene64310:CDS	55.0%
	AAGGTTGACGCGGATGGAGA+TGG	+	chr1.3:28550321-28550340	MS.gene64310:CDS	55.0%
	ACTATGCTGCTGCTGCCACT+GGG	+	chr1.3:28550160-28550179	MS.gene64310:CDS	55.0%
	CAGCAGCAGCATAGTTGCAG+TGG	-	chr1.3:28550155-28550174	None:intergenic	55.0%
	TGCTGCTGCCACTGGGAATG+AGG	+	chr1.3:28550167-28550186	MS.gene64310:CDS	60.0%

Chromosome	Type	Strat	End	Strand	Name
chr1.3	gene	28549961	28550386	28549961	ID=MS.gene64310
chr1.3	mRNA	28549961	28550386	28549961	ID=MS.gene64310.t1;Parent=MS.gene64310
chr1.3	exon	28549961	28550386	28549961	ID=MS.gene64310.t1.exon1;Parent=MS.gene64310.t1
chr1.3	CDS	28549961	28550386	28549961	ID=cds.MS.gene64310.t1;Parent=MS.gene64310.t1

Gene Sequence

>MS.gene64310

ATGGACGACGAGGTGCGTAGCATCTTCAACAAGTTTGACAAGAACGGTGATGGAAAGATCTCTGTCTCGGAACTGGAACAAATGCTTTCGACGCTTGGATCCAAATCGACCTCTGATGAAGTAAAGCAACTGATGGAACATATTGATCAGAATGGTGACGGTTACATTGATCTCAAAGAATTTGCTTATTTCCACTGCAACTATGCTGCTGCTGCCACTGGGAATGAGGTCGAGATTCGTGATGCTTTCGACCTTTACGACTTTGACAAGGACGGTCTCATCTCTCCCACAGAACTGCACATCGTTCTTAACAAACTTGGTGAGAAGTACTCCCTCAGTGATTGTCAGAGAATGATAAGCAAGGTTGACGCGGATGGAGATGGAAAAGTTAACTTTGAGGAGTTCAAGAAGATGATGGCTCGCTGA

Protein sequence

>MS.gene64310.t1

MDDEVRSIFNKFDKNGDGKISVSELEQMLSTLGSKSTSDEVKQLMEHIDQNGDGYIDLKEFAYFHCNYAAAATGNEVEIRDAFDLYDFDKDGLISPTELHIVLNKLGEKYSLSDCQRMISKVDADGDGKVNFEEFKKMMAR