AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene27879


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene27879.t1 MTR_8g088060 100.000 155 0 0 1 155 1 155 5.57e-114 319
MS.gene27879.t1 MTR_5g033960 99.355 155 1 0 1 155 1 155 2.15e-113 318
MS.gene27879.t1 MTR_7g105080 100.000 76 0 0 1 76 1 76 1.75e-49 155
MS.gene27879.t1 MTR_3g092130 100.000 76 0 0 1 76 1 76 1.75e-49 155
MS.gene27879.t1 MTR_1g059690 100.000 76 0 0 1 76 1 76 1.75e-49 155
MS.gene27879.t1 MTR_3g092130 100.000 76 0 0 1 76 1 76 2.36e-49 155
MS.gene27879.t1 MTR_5g092700 98.701 77 1 0 1 77 1 77 2.55e-49 155
MS.gene27879.t1 MTR_5g092700 62.162 74 28 0 3 76 79 152 5.14e-26 96.7
MS.gene27879.t1 MTR_4g073580 98.701 77 1 0 1 77 1 77 2.55e-49 155
MS.gene27879.t1 MTR_4g073580 62.162 74 28 0 3 76 79 152 5.14e-26 96.7
MS.gene27879.t1 MTR_4g073580 98.701 77 1 0 1 77 1 77 1.02e-48 155
MS.gene27879.t1 MTR_4g073580 44.231 104 28 1 3 76 79 182 1.73e-19 80.9
MS.gene27879.t1 MTR_7g116360 97.436 78 2 0 1 78 1 78 1.63e-48 156
MS.gene27879.t1 MTR_7g116360 97.436 78 2 0 1 78 77 154 1.63e-48 156
MS.gene27879.t1 MTR_7g116360 100.000 76 0 0 1 76 153 228 1.92e-48 156
MS.gene27879.t1 MTR_4g088485 97.436 78 2 0 1 78 1 78 1.81e-48 155
MS.gene27879.t1 MTR_4g088485 100.000 76 0 0 1 76 138 213 2.20e-48 155
MS.gene27879.t1 MTR_4g088485 78.205 78 2 1 1 78 77 139 1.49e-33 117
MS.gene27879.t1 MTR_1g066390 98.701 77 1 0 1 77 153 229 2.25e-48 156
MS.gene27879.t1 MTR_1g066390 97.436 78 2 0 1 78 1 78 2.40e-48 156
MS.gene27879.t1 MTR_1g066390 97.436 78 2 0 1 78 77 154 2.40e-48 156
MS.gene27879.t1 MTR_8g018230 97.436 78 2 0 1 78 1 78 4.67e-48 156
MS.gene27879.t1 MTR_8g018230 97.436 78 2 0 1 78 77 154 4.67e-48 156
MS.gene27879.t1 MTR_8g018230 97.436 78 2 0 1 78 153 230 4.67e-48 156
MS.gene27879.t1 MTR_4g080920 96.154 78 3 0 1 78 77 154 5.84e-48 155
MS.gene27879.t1 MTR_4g080920 96.154 78 3 0 1 78 1 78 8.54e-48 154
MS.gene27879.t1 MTR_4g080920 68.831 77 24 0 1 77 153 229 2.07e-29 107
MS.gene27879.t1 MTR_6g061930 97.436 78 2 0 1 78 1 78 1.12e-47 156
MS.gene27879.t1 MTR_6g061930 97.436 78 2 0 1 78 77 154 1.12e-47 156
MS.gene27879.t1 MTR_6g061930 100.000 76 0 0 1 76 214 289 1.36e-47 155
MS.gene27879.t1 MTR_6g061930 75.641 78 4 1 1 78 153 215 6.04e-31 113
MS.gene27879.t1 MTR_4g081010 97.436 78 2 0 1 78 1 78 1.35e-47 156
MS.gene27879.t1 MTR_4g081010 97.436 78 2 0 1 78 77 154 1.35e-47 156
MS.gene27879.t1 MTR_4g081010 97.436 78 2 0 1 78 153 230 1.35e-47 156
MS.gene27879.t1 MTR_4g081010 100.000 76 0 0 1 76 229 304 1.59e-47 156
MS.gene27879.t1 MTR_7g116360 97.436 78 2 0 1 78 49 126 1.49e-47 155
MS.gene27879.t1 MTR_7g116360 97.436 78 2 0 1 78 125 202 1.49e-47 155
MS.gene27879.t1 MTR_7g116360 100.000 76 0 0 1 76 201 276 1.75e-47 155
MS.gene27879.t1 MTR_4g081010 97.436 78 2 0 1 78 1 78 1.63e-47 155
MS.gene27879.t1 MTR_4g081010 97.436 78 2 0 1 78 77 154 1.63e-47 155
MS.gene27879.t1 MTR_4g081010 97.436 78 2 0 1 78 153 230 1.63e-47 155
MS.gene27879.t1 MTR_8g081020 97.436 78 2 0 1 78 1 78 7.05e-47 156
MS.gene27879.t1 MTR_8g081020 97.436 78 2 0 1 78 77 154 7.05e-47 156
MS.gene27879.t1 MTR_8g081020 97.436 78 2 0 1 78 153 230 7.05e-47 156
MS.gene27879.t1 MTR_8g081020 97.436 78 2 0 1 78 229 306 7.05e-47 156
MS.gene27879.t1 MTR_8g081020 100.000 76 0 0 1 76 305 380 8.19e-47 156
MS.gene27879.t1 MTR_4g091580 97.436 78 2 0 1 78 1 78 7.28e-47 156
MS.gene27879.t1 MTR_4g091580 97.436 78 2 0 1 78 77 154 7.28e-47 156
MS.gene27879.t1 MTR_4g091580 97.436 78 2 0 1 78 153 230 7.28e-47 156
MS.gene27879.t1 MTR_4g091580 100.000 76 0 0 1 76 305 380 8.54e-47 156
MS.gene27879.t1 MTR_4g091580 96.154 78 3 0 1 78 229 306 2.03e-46 155
MS.gene27879.t1 MTR_4g080797 97.436 78 2 0 1 78 1 78 7.36e-47 156
MS.gene27879.t1 MTR_4g080797 97.436 78 2 0 1 78 77 154 7.36e-47 156
MS.gene27879.t1 MTR_4g080797 97.436 78 2 0 1 78 153 230 7.36e-47 156
MS.gene27879.t1 MTR_4g080797 97.436 78 2 0 1 78 229 306 7.36e-47 156
MS.gene27879.t1 MTR_4g080797 100.000 76 0 0 1 76 305 380 8.54e-47 156
MS.gene27879.t1 MTR_8g018230 97.436 78 2 0 1 78 1 78 7.36e-47 156
MS.gene27879.t1 MTR_8g018230 97.436 78 2 0 1 78 77 154 7.36e-47 156
MS.gene27879.t1 MTR_8g018230 97.436 78 2 0 1 78 153 230 7.36e-47 156
MS.gene27879.t1 MTR_8g018230 97.436 78 2 0 1 78 229 306 7.36e-47 156
MS.gene27879.t1 MTR_8g018230 100.000 76 0 0 1 76 305 380 8.54e-47 156
MS.gene27879.t1 MTR_4g081010 97.436 78 2 0 1 78 1 78 7.52e-47 156
MS.gene27879.t1 MTR_4g081010 97.436 78 2 0 1 78 77 154 7.52e-47 156
MS.gene27879.t1 MTR_4g081010 97.436 78 2 0 1 78 153 230 7.52e-47 156
MS.gene27879.t1 MTR_4g081010 97.436 78 2 0 1 78 229 306 7.52e-47 156
MS.gene27879.t1 MTR_4g081010 100.000 76 0 0 1 76 305 380 8.82e-47 156
MS.gene27879.t1 MTR_8g018230 97.436 78 2 0 1 78 1 78 3.04e-46 156
MS.gene27879.t1 MTR_8g018230 97.436 78 2 0 1 78 77 154 3.04e-46 156
MS.gene27879.t1 MTR_8g018230 97.436 78 2 0 1 78 153 230 3.04e-46 156
MS.gene27879.t1 MTR_8g018230 97.436 78 2 0 1 78 229 306 3.04e-46 156
MS.gene27879.t1 MTR_8g018230 97.436 78 2 0 1 78 305 382 3.04e-46 156
MS.gene27879.t1 MTR_8g018230 100.000 76 0 0 1 76 381 456 3.52e-46 156
MS.gene27879.t1 MTR_8g018230 97.436 78 2 0 1 78 1 78 3.04e-46 156
MS.gene27879.t1 MTR_8g018230 97.436 78 2 0 1 78 77 154 3.04e-46 156
MS.gene27879.t1 MTR_8g018230 97.436 78 2 0 1 78 153 230 3.04e-46 156
MS.gene27879.t1 MTR_8g018230 97.436 78 2 0 1 78 229 306 3.04e-46 156
MS.gene27879.t1 MTR_8g018230 97.436 78 2 0 1 78 305 382 3.04e-46 156
MS.gene27879.t1 MTR_8g018230 100.000 76 0 0 1 76 381 456 3.52e-46 156
MS.gene27879.t1 MTR_8g018230 97.436 78 2 0 1 78 1 78 9.48e-46 156
MS.gene27879.t1 MTR_8g018230 97.436 78 2 0 1 78 77 154 9.48e-46 156
MS.gene27879.t1 MTR_8g018230 97.436 78 2 0 1 78 153 230 9.48e-46 156
MS.gene27879.t1 MTR_8g018230 97.436 78 2 0 1 78 229 306 9.48e-46 156
MS.gene27879.t1 MTR_8g018230 97.436 78 2 0 1 78 305 382 9.48e-46 156
MS.gene27879.t1 MTR_8g018230 97.436 78 2 0 1 78 381 458 9.48e-46 156
MS.gene27879.t1 MTR_8g018230 100.000 76 0 0 1 76 457 532 1.10e-45 156
MS.gene27879.t1 MTR_4g081010 97.436 78 2 0 1 78 1 78 9.58e-46 156
MS.gene27879.t1 MTR_4g081010 97.436 78 2 0 1 78 77 154 9.58e-46 156
MS.gene27879.t1 MTR_4g081010 97.436 78 2 0 1 78 153 230 9.58e-46 156
MS.gene27879.t1 MTR_4g081010 97.436 78 2 0 1 78 229 306 9.58e-46 156
MS.gene27879.t1 MTR_4g081010 97.436 78 2 0 1 78 305 382 9.58e-46 156
MS.gene27879.t1 MTR_4g081010 97.436 78 2 0 1 78 381 458 9.58e-46 156
MS.gene27879.t1 MTR_4g081010 100.000 76 0 0 1 76 457 532 1.11e-45 156
MS.gene27879.t1 MTR_4g091580 97.436 78 2 0 1 78 1 78 9.68e-46 156
MS.gene27879.t1 MTR_4g091580 97.436 78 2 0 1 78 77 154 9.68e-46 156
MS.gene27879.t1 MTR_4g091580 97.436 78 2 0 1 78 153 230 9.68e-46 156
MS.gene27879.t1 MTR_4g091580 97.436 78 2 0 1 78 229 306 9.68e-46 156
MS.gene27879.t1 MTR_4g091580 97.436 78 2 0 1 78 381 458 9.68e-46 156
MS.gene27879.t1 MTR_4g091580 100.000 76 0 0 1 76 457 532 1.13e-45 156
MS.gene27879.t1 MTR_4g091580 94.872 78 4 0 1 78 305 382 3.17e-44 152
MS.gene27879.t1 MTR_4g088495 97.436 78 2 0 1 78 77 154 7.81e-45 156
MS.gene27879.t1 MTR_4g088495 97.436 78 2 0 1 78 153 230 7.81e-45 156
MS.gene27879.t1 MTR_4g088495 97.436 78 2 0 1 78 229 306 7.81e-45 156
MS.gene27879.t1 MTR_4g088495 97.436 78 2 0 1 78 305 382 7.81e-45 156
MS.gene27879.t1 MTR_4g088495 97.436 78 2 0 1 78 381 458 7.81e-45 156
MS.gene27879.t1 MTR_4g088495 97.436 78 2 0 1 78 457 534 7.81e-45 156
MS.gene27879.t1 MTR_4g088495 97.436 78 2 0 1 78 533 610 7.81e-45 156
MS.gene27879.t1 MTR_4g088495 97.436 78 2 0 1 78 609 686 7.81e-45 156
MS.gene27879.t1 MTR_4g088495 97.436 78 2 0 1 78 685 762 7.81e-45 156
MS.gene27879.t1 MTR_4g088495 100.000 76 0 0 1 76 761 836 9.05e-45 156
MS.gene27879.t1 MTR_4g088495 96.154 78 3 0 1 78 1 78 1.48e-43 153
MS.gene27879.t1 MTR_8g479250 94.872 78 4 0 1 78 141 218 2.25e-37 130
MS.gene27879.t1 MTR_8g479250 76.389 72 6 1 1 72 217 277 1.97e-26 101
MS.gene27879.t1 MTR_8g479250 100.000 41 0 0 1 41 1 41 2.59e-20 85.1
MS.gene27879.t1 MTR_8g479250 88.889 36 4 0 43 78 107 142 3.13e-14 68.6
MS.gene27879.t1 MTR_1g046640 71.053 76 22 0 1 76 240 315 5.54e-28 105
MS.gene27879.t1 MTR_5g076810 68.831 77 23 1 1 76 194 270 1.23e-27 103
MS.gene27879.t1 MTR_5g076660 69.863 73 22 0 1 73 266 338 8.28e-27 103
MS.gene27879.t1 MTR_5g067400 68.421 76 24 0 1 76 241 316 1.71e-25 99.4
MS.gene27879.t1 MTR_5g061310 60.000 75 30 0 1 75 2 76 1.12e-24 90.9
MS.gene27879.t1 MTR_5g076370 64.384 73 26 0 1 73 267 339 8.06e-23 92.4
MS.gene27879.t1 MTR_5g076505 61.333 75 29 0 1 75 240 314 8.40e-23 92.0
MS.gene27879.t1 MTR_2g038430 61.333 75 29 0 1 75 268 342 8.61e-23 92.4
MS.gene27879.t1 MTR_5g076720 65.333 75 26 0 1 75 315 389 3.99e-22 91.3
MS.gene27879.t1 MTR_1g046650 57.895 76 32 0 1 76 171 246 4.23e-22 89.0
MS.gene27879.t1 MTR_1g046650 57.895 76 32 0 1 76 240 315 6.58e-22 89.7
MS.gene27879.t1 MTR_1g046650 57.895 76 32 0 1 76 240 315 8.09e-22 89.4
MS.gene27879.t1 MTR_1g046650 57.895 76 32 0 1 76 271 346 1.20e-21 89.4
MS.gene27879.t1 MTR_5g076740 59.211 76 30 1 1 75 86 161 2.43e-21 85.1
MS.gene27879.t1 MTR_2g038420 60.000 75 30 0 1 75 260 334 2.45e-21 88.2
MS.gene27879.t1 MTR_7g094390 58.667 75 31 0 1 75 402 476 7.31e-20 85.1
MS.gene27879.t1 MTR_5g076520 57.333 75 31 1 1 74 244 318 1.00e-18 81.3
MS.gene27879.t1 MTR_7g024290 60.526 76 29 1 1 75 241 316 2.09e-18 80.1
MS.gene27879.t1 MTR_5g061290 53.333 75 35 0 1 75 252 326 1.49e-17 77.8
MS.gene27879.t1 MTR_4g009980 55.224 67 30 0 9 75 4 70 1.63e-17 72.4
MS.gene27879.t1 MTR_5g076350 48.684 76 38 1 1 75 8 83 3.57e-15 67.0
MS.gene27879.t1 MTR_5g076780 58.333 60 25 0 15 74 4 63 8.09e-15 65.5
MS.gene27879.t1 MTR_5g076760 58.621 58 24 0 10 67 4 61 8.22e-15 65.9
MS.gene27879.t1 MTR_5g076340 50.649 77 36 2 1 75 9 85 2.21e-14 64.7
MS.gene27879.t1 MTR_4g080783 41.176 85 46 1 44 124 7 91 2.46e-12 59.7
MS.gene27879.t1 MTR_4g070200 56.140 57 21 2 45 101 17 69 8.39e-11 56.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene27879.t1 AT2G47110 96.129 155 6 0 1 155 1 155 1.85e-108 305
MS.gene27879.t1 AT2G47110 96.129 155 6 0 1 155 1 155 1.85e-108 305
MS.gene27879.t1 AT3G62250 96.711 152 5 0 1 152 1 152 4.31e-108 305
MS.gene27879.t1 AT1G23410 91.558 154 13 0 1 154 1 154 2.55e-91 262
MS.gene27879.t1 AT3G52590 100.000 76 0 0 1 76 1 76 1.76e-49 155
MS.gene27879.t1 AT2G36170 100.000 76 0 0 1 76 1 76 1.76e-49 155
MS.gene27879.t1 AT4G05050 97.436 78 2 0 1 78 1 78 2.14e-49 156
MS.gene27879.t1 AT4G05050 100.000 76 0 0 1 76 77 152 2.53e-49 155
MS.gene27879.t1 AT4G05320 97.436 78 2 0 1 78 1 78 2.14e-49 156
MS.gene27879.t1 AT4G05320 100.000 76 0 0 1 76 77 152 2.53e-49 155
MS.gene27879.t1 AT2G35635 98.701 77 1 0 1 77 1 77 2.66e-49 155
MS.gene27879.t1 AT2G35635 62.162 74 28 0 3 76 79 152 1.68e-25 95.5
MS.gene27879.t1 AT1G31340 98.701 77 1 0 1 77 1 77 4.02e-49 155
MS.gene27879.t1 AT1G31340 63.514 74 27 0 3 76 79 152 1.45e-26 98.2
MS.gene27879.t1 AT4G05050 97.436 78 2 0 1 78 1 78 1.71e-48 156
MS.gene27879.t1 AT4G05050 97.436 78 2 0 1 78 77 154 1.71e-48 156
MS.gene27879.t1 AT4G05050 100.000 76 0 0 1 76 153 228 2.01e-48 156
MS.gene27879.t1 AT4G05050 97.436 78 2 0 1 78 1 78 1.71e-48 156
MS.gene27879.t1 AT4G05050 97.436 78 2 0 1 78 77 154 1.71e-48 156
MS.gene27879.t1 AT4G05050 100.000 76 0 0 1 76 153 228 2.01e-48 156
MS.gene27879.t1 AT4G05050 97.436 78 2 0 1 78 1 78 1.71e-48 156
MS.gene27879.t1 AT4G05050 97.436 78 2 0 1 78 77 154 1.71e-48 156
MS.gene27879.t1 AT4G05050 100.000 76 0 0 1 76 153 228 2.01e-48 156
MS.gene27879.t1 AT4G02890 97.436 78 2 0 1 78 1 78 1.71e-48 156
MS.gene27879.t1 AT4G02890 97.436 78 2 0 1 78 77 154 1.71e-48 156
MS.gene27879.t1 AT4G02890 100.000 76 0 0 1 76 153 228 2.01e-48 156
MS.gene27879.t1 AT4G02890 97.436 78 2 0 1 78 1 78 1.71e-48 156
MS.gene27879.t1 AT4G02890 97.436 78 2 0 1 78 77 154 1.71e-48 156
MS.gene27879.t1 AT4G02890 100.000 76 0 0 1 76 153 228 2.01e-48 156
MS.gene27879.t1 AT1G55060 96.154 78 3 0 1 78 77 154 6.49e-48 155
MS.gene27879.t1 AT1G55060 96.104 77 3 0 1 77 153 229 5.75e-46 150
MS.gene27879.t1 AT1G55060 84.615 78 12 0 1 78 1 78 1.13e-41 139
MS.gene27879.t1 AT5G03240 98.701 77 1 0 1 77 229 305 8.09e-48 157
MS.gene27879.t1 AT5G03240 97.436 78 2 0 1 78 1 78 1.26e-47 156
MS.gene27879.t1 AT5G03240 97.436 78 2 0 1 78 77 154 1.26e-47 156
MS.gene27879.t1 AT5G03240 97.436 78 2 0 1 78 153 230 1.26e-47 156
MS.gene27879.t1 AT5G03240 98.701 77 1 0 1 77 229 305 8.09e-48 157
MS.gene27879.t1 AT5G03240 97.436 78 2 0 1 78 1 78 1.26e-47 156
MS.gene27879.t1 AT5G03240 97.436 78 2 0 1 78 77 154 1.26e-47 156
MS.gene27879.t1 AT5G03240 97.436 78 2 0 1 78 153 230 1.26e-47 156
MS.gene27879.t1 AT5G03240 98.701 77 1 0 1 77 229 305 8.09e-48 157
MS.gene27879.t1 AT5G03240 97.436 78 2 0 1 78 1 78 1.26e-47 156
MS.gene27879.t1 AT5G03240 97.436 78 2 0 1 78 77 154 1.26e-47 156
MS.gene27879.t1 AT5G03240 97.436 78 2 0 1 78 153 230 1.26e-47 156
MS.gene27879.t1 AT5G20620 98.701 77 1 0 1 77 229 305 8.09e-48 157
MS.gene27879.t1 AT5G20620 97.436 78 2 0 1 78 1 78 1.26e-47 156
MS.gene27879.t1 AT5G20620 97.436 78 2 0 1 78 77 154 1.26e-47 156
MS.gene27879.t1 AT5G20620 97.436 78 2 0 1 78 153 230 1.26e-47 156
MS.gene27879.t1 AT4G05320 97.436 78 2 0 1 78 1 78 1.44e-47 156
MS.gene27879.t1 AT4G05320 97.436 78 2 0 1 78 77 154 1.44e-47 156
MS.gene27879.t1 AT4G05320 97.436 78 2 0 1 78 153 230 1.44e-47 156
MS.gene27879.t1 AT4G05320 100.000 76 0 0 1 76 229 304 1.70e-47 156
MS.gene27879.t1 AT4G05320 97.436 78 2 0 1 78 1 78 1.44e-47 156
MS.gene27879.t1 AT4G05320 97.436 78 2 0 1 78 77 154 1.44e-47 156
MS.gene27879.t1 AT4G05320 97.436 78 2 0 1 78 153 230 1.44e-47 156
MS.gene27879.t1 AT4G05320 100.000 76 0 0 1 76 229 304 1.70e-47 156
MS.gene27879.t1 AT4G02890 97.436 78 2 0 1 78 1 78 1.44e-47 156
MS.gene27879.t1 AT4G02890 97.436 78 2 0 1 78 77 154 1.44e-47 156
MS.gene27879.t1 AT4G02890 97.436 78 2 0 1 78 153 230 1.44e-47 156
MS.gene27879.t1 AT4G02890 100.000 76 0 0 1 76 229 304 1.70e-47 156
MS.gene27879.t1 AT4G02890 97.436 78 2 0 1 78 1 78 1.44e-47 156
MS.gene27879.t1 AT4G02890 97.436 78 2 0 1 78 77 154 1.44e-47 156
MS.gene27879.t1 AT4G02890 97.436 78 2 0 1 78 153 230 1.44e-47 156
MS.gene27879.t1 AT4G02890 100.000 76 0 0 1 76 229 304 1.70e-47 156
MS.gene27879.t1 AT1G65350 97.436 78 2 0 1 78 1 78 2.33e-47 156
MS.gene27879.t1 AT1G65350 96.154 78 3 0 1 78 152 229 3.25e-46 153
MS.gene27879.t1 AT1G65350 96.154 78 2 1 1 78 77 153 2.10e-44 148
MS.gene27879.t1 AT1G65350 79.121 91 5 1 1 77 228 318 1.05e-38 134
MS.gene27879.t1 AT5G20620 98.701 77 1 0 1 77 305 381 4.62e-47 157
MS.gene27879.t1 AT5G20620 97.436 78 2 0 1 78 1 78 7.15e-47 156
MS.gene27879.t1 AT5G20620 97.436 78 2 0 1 78 77 154 7.15e-47 156
MS.gene27879.t1 AT5G20620 97.436 78 2 0 1 78 153 230 7.15e-47 156
MS.gene27879.t1 AT5G20620 97.436 78 2 0 1 78 229 306 7.15e-47 156
MS.gene27879.t1 AT4G05320 97.436 78 2 0 1 78 1 78 7.71e-47 156
MS.gene27879.t1 AT4G05320 97.436 78 2 0 1 78 77 154 7.71e-47 156
MS.gene27879.t1 AT4G05320 97.436 78 2 0 1 78 153 230 7.71e-47 156
MS.gene27879.t1 AT4G05320 97.436 78 2 0 1 78 229 306 7.71e-47 156
MS.gene27879.t1 AT4G05320 100.000 76 0 0 1 76 305 380 8.95e-47 156
MS.gene27879.t1 AT4G05320 97.436 78 2 0 1 78 1 78 7.71e-47 156
MS.gene27879.t1 AT4G05320 97.436 78 2 0 1 78 77 154 7.71e-47 156
MS.gene27879.t1 AT4G05320 97.436 78 2 0 1 78 153 230 7.71e-47 156
MS.gene27879.t1 AT4G05320 97.436 78 2 0 1 78 229 306 7.71e-47 156
MS.gene27879.t1 AT4G05320 100.000 76 0 0 1 76 305 380 8.95e-47 156
MS.gene27879.t1 AT4G05320 97.436 78 2 0 1 78 1 78 7.71e-47 156
MS.gene27879.t1 AT4G05320 97.436 78 2 0 1 78 77 154 7.71e-47 156
MS.gene27879.t1 AT4G05320 97.436 78 2 0 1 78 153 230 7.71e-47 156
MS.gene27879.t1 AT4G05320 97.436 78 2 0 1 78 229 306 7.71e-47 156
MS.gene27879.t1 AT4G05320 100.000 76 0 0 1 76 305 380 8.95e-47 156
MS.gene27879.t1 AT5G37640 94.872 78 4 0 1 78 79 156 2.11e-46 154
MS.gene27879.t1 AT5G37640 91.026 78 7 0 1 78 155 232 2.20e-42 143
MS.gene27879.t1 AT5G37640 92.208 77 5 1 1 76 231 307 3.41e-40 137
MS.gene27879.t1 AT5G37640 76.923 78 18 0 1 78 3 80 1.16e-33 120
MS.gene27879.t1 AT4G05320 97.436 78 2 0 1 78 1 78 3.18e-46 156
MS.gene27879.t1 AT4G05320 97.436 78 2 0 1 78 77 154 3.18e-46 156
MS.gene27879.t1 AT4G05320 97.436 78 2 0 1 78 153 230 3.18e-46 156
MS.gene27879.t1 AT4G05320 97.436 78 2 0 1 78 229 306 3.18e-46 156
MS.gene27879.t1 AT4G05320 97.436 78 2 0 1 78 305 382 3.18e-46 156
MS.gene27879.t1 AT4G05320 100.000 76 0 0 1 76 381 456 3.69e-46 156
MS.gene27879.t1 AT4G05320 97.436 78 2 0 1 78 1 78 3.18e-46 156
MS.gene27879.t1 AT4G05320 97.436 78 2 0 1 78 77 154 3.18e-46 156
MS.gene27879.t1 AT4G05320 97.436 78 2 0 1 78 153 230 3.18e-46 156
MS.gene27879.t1 AT4G05320 97.436 78 2 0 1 78 229 306 3.18e-46 156
MS.gene27879.t1 AT4G05320 97.436 78 2 0 1 78 305 382 3.18e-46 156
MS.gene27879.t1 AT4G05320 100.000 76 0 0 1 76 381 456 3.69e-46 156
MS.gene27879.t1 AT3G09790 91.026 78 7 0 1 78 79 156 1.49e-39 140
MS.gene27879.t1 AT3G09790 83.333 78 13 0 1 78 3 80 4.62e-36 131
MS.gene27879.t1 AT3G09790 79.730 74 15 0 1 74 552 625 1.29e-30 116
MS.gene27879.t1 AT3G09790 69.231 78 24 0 1 78 393 470 9.62e-28 108
MS.gene27879.t1 AT3G09790 73.684 76 18 1 1 74 319 394 9.49e-27 105
MS.gene27879.t1 AT3G09790 68.675 83 21 1 1 78 238 320 4.45e-26 103
MS.gene27879.t1 AT3G09790 67.073 82 20 2 1 75 155 236 1.20e-25 102
MS.gene27879.t1 AT3G09790 64.706 85 23 1 1 78 469 553 1.20e-24 99.4
MS.gene27879.t1 AT3G09790 91.026 78 7 0 1 78 79 156 1.49e-39 140
MS.gene27879.t1 AT3G09790 83.333 78 13 0 1 78 3 80 4.62e-36 131
MS.gene27879.t1 AT3G09790 79.730 74 15 0 1 74 552 625 1.29e-30 116
MS.gene27879.t1 AT3G09790 69.231 78 24 0 1 78 393 470 9.62e-28 108
MS.gene27879.t1 AT3G09790 73.684 76 18 1 1 74 319 394 9.49e-27 105
MS.gene27879.t1 AT3G09790 68.675 83 21 1 1 78 238 320 4.45e-26 103
MS.gene27879.t1 AT3G09790 67.073 82 20 2 1 75 155 236 1.20e-25 102
MS.gene27879.t1 AT3G09790 64.706 85 23 1 1 78 469 553 1.20e-24 99.4
MS.gene27879.t1 AT1G53930 75.342 73 18 0 1 73 86 158 1.22e-32 114
MS.gene27879.t1 AT1G53950 61.972 71 27 0 1 71 69 139 1.24e-24 92.8
MS.gene27879.t1 AT1G11980 55.263 76 34 0 1 76 1 76 6.99e-24 89.0
MS.gene27879.t1 AT1G53945 44.286 70 39 0 1 70 46 115 2.17e-12 60.8
MS.gene27879.t1 AT5G42220 38.889 72 44 0 1 72 24 95 3.85e-12 63.5
MS.gene27879.t1 AT5G42220 38.889 72 44 0 1 72 24 95 3.85e-12 63.5
MS.gene27879.t1 AT4G12570 38.667 75 45 1 1 74 95 169 7.12e-12 62.8

Find 44 sgRNAs with CRISPR-Local

Find 47 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCCTTCCTTATCTTGGATCT+TGG 0.263002 4.1:+12636143 None:intergenic
GCCGTCTTCCAACTGCTTTC+CGG 0.265154 4.1:+12636089 None:intergenic
GGGTTATCGTCTTCCCTGTT+AGG 0.275426 4.1:+12636205 None:intergenic
TAATCTATGCTTCAGCCTTC+TGG 0.314873 4.1:+12635776 None:intergenic
TGCTTGTGCTTGATCTTCTT+AGG 0.315697 4.1:+12635964 None:intergenic
ATCTTCGTGAAAACCCTAAC+AGG 0.342406 4.1:-12636219 MS.gene27879:CDS
GGTGAAGAGTGGATTCCTTC+TGG 0.367185 4.1:+12636043 None:intergenic
GAGGAATTCCTTCCTTATCT+TGG 0.378493 4.1:+12636136 None:intergenic
GTGCTTGATCTTCTTAGGCT+TGG 0.399157 4.1:+12635969 None:intergenic
CCAGCACCACACTCAGCATT+AGG 0.399166 4.1:+12635862 None:intergenic
AAGATGAGACGTTGCTGGTC+CGG 0.411687 4.1:+12636114 None:intergenic
CACCTTGTTCTCCGTCTTCG+TGG 0.413158 4.1:-12636024 MS.gene27879:CDS
CCTAATGCTGAGTGTGGTGC+TGG 0.421706 4.1:-12635862 MS.gene27879:CDS
GGTTATCGTCTTCCCTGTTA+GGG 0.439791 4.1:+12636206 None:intergenic
CGGCGAAGATGAGACGTTGC+TGG 0.440810 4.1:+12636109 None:intergenic
TAAGGTTGATGATTCTGGTA+AGG 0.507107 4.1:-12635908 MS.gene27879:CDS
CAAAGCCAAGATCCAAGATA+AGG 0.518794 4.1:-12636148 MS.gene27879:CDS
TGTTGTAGTCGGCGAGAGTA+CGG 0.521646 4.1:+12636067 None:intergenic
TTCCTTCTGGATGTTGTAGT+CGG 0.528293 4.1:+12636056 None:intergenic
CTGGTAAGGTGCAGAGGTTG+AGG 0.530489 4.1:-12635894 MS.gene27879:CDS
CATCTTCGCCGGAAAGCAGT+TGG 0.539606 4.1:-12636097 MS.gene27879:CDS
CACCACGAAGACGGAGAACA+AGG 0.547100 4.1:+12636022 None:intergenic
AGAAGATCAAGCACAAGCAT+AGG 0.547871 4.1:-12635960 MS.gene27879:CDS
GCCGGAAAGCAGTTGGAAGA+CGG 0.581960 4.1:-12636090 MS.gene27879:CDS
CAGCAACGTCTCATCTTCGC+CGG 0.583325 4.1:-12636108 MS.gene27879:CDS
AGATAAGGAAGGAATTCCTC+CGG 0.586247 4.1:-12636133 MS.gene27879:CDS
ACGGAGAACAAGGTGAAGAG+TGG 0.590212 4.1:+12636032 None:intergenic
TCTTAGCGCCACCACGAAGA+CGG 0.590816 4.1:+12636013 None:intergenic
TGTCGGAAGACTCAACCTCA+AGG 0.602618 4.1:+12636184 None:intergenic
ATGAGACGTTGCTGGTCCGG+AGG 0.611034 4.1:+12636117 None:intergenic
GCCAAGATCCAAGATAAGGA+AGG 0.618519 4.1:-12636144 MS.gene27879:CDS
CTTGTTCTCCGTCTTCGTGG+TGG 0.619238 4.1:-12636021 MS.gene27879:CDS
TTTGACGTTGTCGATTGTGT+CGG 0.621280 4.1:+12636167 None:intergenic
GATCAAGCACAAGCATAGGA+AGG 0.622172 4.1:-12635956 MS.gene27879:CDS
ATGATTCTGGTAAGGTGCAG+AGG 0.622645 4.1:-12635900 MS.gene27879:CDS
GTCGGAAGACTCAACCTCAA+GGG 0.624869 4.1:+12636185 None:intergenic
TTCAGCCTTCTGGTAAACAT+AGG 0.629011 4.1:+12635786 None:intergenic
TAAGGTGCAGAGGTTGAGGA+AGG 0.629109 4.1:-12635890 MS.gene27879:CDS
CGTCATTATTGTGGTAAGTG+TGG 0.634236 4.1:-12635814 MS.gene27879:CDS
CGCCGACTACAACATCCAGA+AGG 0.634733 4.1:-12636058 MS.gene27879:CDS
TCTTACCTATGTTTACCAGA+AGG 0.642596 4.1:-12635791 MS.gene27879:CDS
GAGTGTCCTAATGCTGAGTG+TGG 0.690300 4.1:-12635868 MS.gene27879:CDS
TCTTCGTGAAAACCCTAACA+GGG 0.705571 4.1:-12636218 MS.gene27879:CDS
AGGGAAGACGATAACCCTTG+AGG 0.708675 4.1:-12636199 MS.gene27879:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTATAAGGTTGATGATTC+TGG - chr4.1:12636092-12636111 MS.gene27879:CDS 25.0%
!! CATTTTGATCGTCATTATTG+TGG - chr4.1:12636182-12636201 MS.gene27879:CDS 30.0%
!! TGCTGTTCTTCAGTTTTATA+AGG - chr4.1:12636079-12636098 MS.gene27879:CDS 30.0%
TCTTACCTATGTTTACCAGA+AGG - chr4.1:12636214-12636233 MS.gene27879:CDS 35.0%
!! TAAGGTTGATGATTCTGGTA+AGG - chr4.1:12636097-12636116 MS.gene27879:CDS 35.0%
AGAAGATCAAGCACAAGCAT+AGG - chr4.1:12636045-12636064 MS.gene27879:CDS 40.0%
AGATAAGGAAGGAATTCCTC+CGG - chr4.1:12635872-12635891 MS.gene27879:CDS 40.0%
ATCTTCGTGAAAACCCTAAC+AGG - chr4.1:12635786-12635805 MS.gene27879:CDS 40.0%
CAAAGCCAAGATCCAAGATA+AGG - chr4.1:12635857-12635876 MS.gene27879:CDS 40.0%
CGTCATTATTGTGGTAAGTG+TGG - chr4.1:12636191-12636210 MS.gene27879:CDS 40.0%
GAGGAATTCCTTCCTTATCT+TGG + chr4.1:12635872-12635891 None:intergenic 40.0%
TCCTTCCTTATCTTGGATCT+TGG + chr4.1:12635865-12635884 None:intergenic 40.0%
TCTTCGTGAAAACCCTAACA+GGG - chr4.1:12635787-12635806 MS.gene27879:CDS 40.0%
TGCTTGTGCTTGATCTTCTT+AGG + chr4.1:12636044-12636063 None:intergenic 40.0%
TTCAGCCTTCTGGTAAACAT+AGG + chr4.1:12636222-12636241 None:intergenic 40.0%
TTCCTTCTGGATGTTGTAGT+CGG + chr4.1:12635952-12635971 None:intergenic 40.0%
! TTTGACGTTGTCGATTGTGT+CGG + chr4.1:12635841-12635860 None:intergenic 40.0%
ATGATTCTGGTAAGGTGCAG+AGG - chr4.1:12636105-12636124 MS.gene27879:CDS 45.0%
GATCAAGCACAAGCATAGGA+AGG - chr4.1:12636049-12636068 MS.gene27879:CDS 45.0%
GCCAAGATCCAAGATAAGGA+AGG - chr4.1:12635861-12635880 MS.gene27879:CDS 45.0%
GGTTATCGTCTTCCCTGTTA+GGG + chr4.1:12635802-12635821 None:intergenic 45.0%
GTGCTTGATCTTCTTAGGCT+TGG + chr4.1:12636039-12636058 None:intergenic 45.0%
!! GTGTGGTGCTGGAACTTTTA+TGG - chr4.1:12636154-12636173 MS.gene27879:CDS 45.0%
AAGATGAGACGTTGCTGGTC+CGG + chr4.1:12635894-12635913 None:intergenic 50.0%
ACGGAGAACAAGGTGAAGAG+TGG + chr4.1:12635976-12635995 None:intergenic 50.0%
AGGGAAGACGATAACCCTTG+AGG - chr4.1:12635806-12635825 MS.gene27879:CDS 50.0%
GAGTGTCCTAATGCTGAGTG+TGG - chr4.1:12636137-12636156 MS.gene27879:CDS 50.0%
GGGTTATCGTCTTCCCTGTT+AGG + chr4.1:12635803-12635822 None:intergenic 50.0%
GTCGGAAGACTCAACCTCAA+GGG + chr4.1:12635823-12635842 None:intergenic 50.0%
TAAGGTGCAGAGGTTGAGGA+AGG - chr4.1:12636115-12636134 MS.gene27879:CDS 50.0%
TGTCGGAAGACTCAACCTCA+AGG + chr4.1:12635824-12635843 None:intergenic 50.0%
TGTTGTAGTCGGCGAGAGTA+CGG + chr4.1:12635941-12635960 None:intergenic 50.0%
! GGTGAAGAGTGGATTCCTTC+TGG + chr4.1:12635965-12635984 None:intergenic 50.0%
CACCACGAAGACGGAGAACA+AGG + chr4.1:12635986-12636005 None:intergenic 55.0%
CACCTTGTTCTCCGTCTTCG+TGG - chr4.1:12635981-12636000 MS.gene27879:CDS 55.0%
CAGCAACGTCTCATCTTCGC+CGG - chr4.1:12635897-12635916 MS.gene27879:CDS 55.0%
CATCTTCGCCGGAAAGCAGT+TGG - chr4.1:12635908-12635927 MS.gene27879:CDS 55.0%
CCAGCACCACACTCAGCATT+AGG + chr4.1:12636146-12636165 None:intergenic 55.0%
CCTAATGCTGAGTGTGGTGC+TGG - chr4.1:12636143-12636162 MS.gene27879:CDS 55.0%
CTGGTAAGGTGCAGAGGTTG+AGG - chr4.1:12636111-12636130 MS.gene27879:CDS 55.0%
CTTGTTCTCCGTCTTCGTGG+TGG - chr4.1:12635984-12636003 MS.gene27879:CDS 55.0%
GCCGGAAAGCAGTTGGAAGA+CGG - chr4.1:12635915-12635934 MS.gene27879:CDS 55.0%
GCCGTCTTCCAACTGCTTTC+CGG + chr4.1:12635919-12635938 None:intergenic 55.0%
TCTTAGCGCCACCACGAAGA+CGG + chr4.1:12635995-12636014 None:intergenic 55.0%
! CGCCGACTACAACATCCAGA+AGG - chr4.1:12635947-12635966 MS.gene27879:CDS 55.0%
ATGAGACGTTGCTGGTCCGG+AGG + chr4.1:12635891-12635910 None:intergenic 60.0%
CGGCGAAGATGAGACGTTGC+TGG + chr4.1:12635899-12635918 None:intergenic 60.0%


Chromosome Type Strat End Strand Name
chr4.1 gene 12635780 12636247 12635780 ID=MS.gene27879
chr4.1 mRNA 12635780 12636247 12635780 ID=MS.gene27879.t1;Parent=MS.gene27879
chr4.1 exon 12635780 12636247 12635780 ID=MS.gene27879.t1.exon1;Parent=MS.gene27879.t1
chr4.1 CDS 12635780 12636247 12635780 ID=cds.MS.gene27879.t1;Parent=MS.gene27879.t1
Gene Sequence

>MS.gene27879

ATGCAGATCTTCGTGAAAACCCTAACAGGGAAGACGATAACCCTTGAGGTTGAGTCTTCCGACACAATCGACAACGTCAAAGCCAAGATCCAAGATAAGGAAGGAATTCCTCCGGACCAGCAACGTCTCATCTTCGCCGGAAAGCAGTTGGAAGACGGCCGTACTCTCGCCGACTACAACATCCAGAAGGAATCCACTCTTCACCTTGTTCTCCGTCTTCGTGGTGGCGCTAAGAAGCGTAAGAAGAAGACTTACACCAAGCCTAAGAAGATCAAGCACAAGCATAGGAAGGTGAAGCTTGCTGTTCTTCAGTTTTATAAGGTTGATGATTCTGGTAAGGTGCAGAGGTTGAGGAAGGAGTGTCCTAATGCTGAGTGTGGTGCTGGAACTTTTATGGCGAATCATTTTGATCGTCATTATTGTGGTAAGTGTGGTCTTACCTATGTTTACCAGAAGGCTGAAGCATAG

Protein sequence

>MS.gene27879.t1

MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGAKKRKKKTYTKPKKIKHKHRKVKLAVLQFYKVDDSGKVQRLRKECPNAECGAGTFMANHFDRHYCGKCGLTYVYQKAEA