Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene21696.t1 | KEH27392.1 | 83.9 | 124 | 20 | 0 | 13 | 136 | 3 | 126 | 1.20E-51 | 212.6 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene21696.t1 | Q9LE22 | 44.5 | 137 | 72 | 1 | 3 | 139 | 22 | 154 | 1.8e-24 | 113.6 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene21696.t1 | A0A072UCS5 | 83.9 | 124 | 20 | 0 | 13 | 136 | 3 | 126 | 8.4e-52 | 212.6 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene049142 | MS.gene21696 | 0.806634 | 7.48E-50 | -1.69E-46 |
MS.gene049159 | MS.gene21696 | 0.815587 | 8.56E-52 | -1.69E-46 |
MS.gene049983 | MS.gene21696 | 0.806022 | 1.01E-49 | -1.69E-46 |
MS.gene051800 | MS.gene21696 | 0.814025 | 1.90E-51 | -1.69E-46 |
MS.gene052463 | MS.gene21696 | 0.825161 | 5.45E-54 | -1.69E-46 |
MS.gene052516 | MS.gene21696 | 0.800749 | 1.25E-48 | -1.69E-46 |
MS.gene052519 | MS.gene21696 | 0.808668 | 2.77E-50 | -1.69E-46 |
MS.gene052863 | MS.gene21696 | 0.80421 | 2.41E-49 | -1.69E-46 |
MS.gene054236 | MS.gene21696 | 0.82292 | 1.83E-53 | -1.69E-46 |
MS.gene05458 | MS.gene21696 | 0.803875 | 2.83E-49 | -1.69E-46 |
MS.gene054651 | MS.gene21696 | 0.806399 | 8.38E-50 | -1.69E-46 |
MS.gene054775 | MS.gene21696 | 0.811215 | 7.83E-51 | -1.69E-46 |
MS.gene055926 | MS.gene21696 | 0.80976 | 1.61E-50 | -1.69E-46 |
MS.gene056595 | MS.gene21696 | 0.810067 | 1.39E-50 | -1.69E-46 |
MS.gene058010 | MS.gene21696 | 0.817038 | 4.06E-52 | -1.69E-46 |
MS.gene059283 | MS.gene21696 | 0.802524 | 5.39E-49 | -1.69E-46 |
MS.gene06052 | MS.gene21696 | 0.825333 | 4.96E-54 | -1.69E-46 |
PPI:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene21696.t1 | MTR_5g008705 | 83.200 | 125 | 21 | 0 | 12 | 136 | 2 | 126 | 1.93e-71 | 210 |
MS.gene21696.t1 | MTR_1g046950 | 66.901 | 142 | 45 | 1 | 1 | 140 | 1 | 142 | 1.67e-58 | 178 |
MS.gene21696.t1 | MTR_1g047100 | 67.391 | 138 | 44 | 1 | 1 | 137 | 1 | 138 | 3.08e-57 | 175 |
MS.gene21696.t1 | MTR_5g008695 | 74.783 | 115 | 27 | 1 | 28 | 140 | 1 | 115 | 2.53e-54 | 166 |
MS.gene21696.t1 | MTR_5g079340 | 65.468 | 139 | 43 | 2 | 1 | 137 | 1 | 136 | 4.28e-54 | 167 |
MS.gene21696.t1 | MTR_3g067610 | 54.676 | 139 | 59 | 1 | 2 | 140 | 3 | 137 | 5.85e-48 | 151 |
MS.gene21696.t1 | MTR_8g107110 | 46.667 | 135 | 71 | 1 | 3 | 137 | 23 | 156 | 1.42e-32 | 113 |
MS.gene21696.t1 | MTR_6g079570 | 45.652 | 138 | 73 | 2 | 3 | 139 | 25 | 161 | 7.27e-31 | 109 |
MS.gene21696.t1 | MTR_1g032070 | 37.692 | 130 | 81 | 0 | 8 | 137 | 50 | 179 | 1.64e-24 | 93.6 |
MS.gene21696.t1 | MTR_8g036075 | 43.885 | 139 | 68 | 4 | 8 | 137 | 53 | 190 | 5.05e-22 | 87.0 |
MS.gene21696.t1 | MTR_8g105230 | 33.594 | 128 | 85 | 0 | 8 | 135 | 40 | 167 | 5.31e-22 | 87.0 |
MS.gene21696.t1 | MTR_7g075040 | 37.671 | 146 | 82 | 4 | 1 | 137 | 44 | 189 | 6.58e-19 | 79.0 |
MS.gene21696.t1 | MTR_4g067270 | 34.091 | 132 | 85 | 1 | 8 | 137 | 9 | 140 | 8.64e-19 | 77.4 |
MS.gene21696.t1 | MTR_7g089760 | 35.507 | 138 | 87 | 1 | 2 | 137 | 3 | 140 | 1.21e-18 | 77.0 |
MS.gene21696.t1 | MTR_1g041285 | 33.094 | 139 | 90 | 1 | 2 | 137 | 7 | 145 | 5.29e-17 | 72.8 |
MS.gene21696.t1 | MTR_6g023460 | 33.846 | 130 | 85 | 1 | 8 | 137 | 12 | 140 | 1.22e-16 | 71.6 |
MS.gene21696.t1 | MTR_7g074240 | 33.562 | 146 | 85 | 3 | 4 | 137 | 24 | 169 | 3.46e-16 | 71.6 |
MS.gene21696.t1 | MTR_7g087610 | 29.457 | 129 | 91 | 0 | 9 | 137 | 17 | 145 | 4.83e-16 | 70.5 |
MS.gene21696.t1 | MTR_5g088320 | 30.233 | 129 | 90 | 0 | 9 | 137 | 17 | 145 | 6.38e-16 | 70.1 |
MS.gene21696.t1 | MTR_6g025320 | 30.233 | 129 | 90 | 0 | 9 | 137 | 17 | 145 | 6.73e-16 | 70.1 |
MS.gene21696.t1 | MTR_1g046960 | 58.333 | 60 | 24 | 1 | 28 | 86 | 1 | 60 | 1.28e-15 | 68.2 |
MS.gene21696.t1 | MTR_5g017510 | 31.429 | 140 | 88 | 3 | 2 | 137 | 46 | 181 | 2.12e-15 | 69.7 |
MS.gene21696.t1 | MTR_5g017560 | 31.429 | 140 | 88 | 3 | 2 | 137 | 46 | 181 | 2.12e-15 | 69.7 |
MS.gene21696.t1 | MTR_0168s0120 | 30.275 | 109 | 76 | 0 | 29 | 137 | 1 | 109 | 5.39e-15 | 66.6 |
MS.gene21696.t1 | MTR_6g025320 | 30.275 | 109 | 76 | 0 | 29 | 137 | 1 | 109 | 5.39e-15 | 66.6 |
MS.gene21696.t1 | MTR_4g086260 | 31.884 | 138 | 92 | 1 | 3 | 140 | 56 | 191 | 9.92e-15 | 68.2 |
MS.gene21696.t1 | MTR_1g076650 | 30.233 | 129 | 90 | 0 | 9 | 137 | 17 | 145 | 3.85e-14 | 65.5 |
MS.gene21696.t1 | MTR_3g089070 | 30.952 | 126 | 86 | 1 | 12 | 137 | 14 | 138 | 8.13e-14 | 64.3 |
MS.gene21696.t1 | MTR_3g089090 | 30.952 | 126 | 86 | 1 | 12 | 137 | 13 | 137 | 8.85e-14 | 64.3 |
MS.gene21696.t1 | MTR_5g017550 | 28.676 | 136 | 96 | 1 | 2 | 137 | 46 | 180 | 1.52e-13 | 64.7 |
MS.gene21696.t1 | MTR_3g083470 | 32.927 | 82 | 55 | 0 | 56 | 137 | 135 | 216 | 5.97e-13 | 63.9 |
MS.gene21696.t1 | MTR_8g066630 | 25.926 | 135 | 97 | 1 | 8 | 139 | 21 | 155 | 1.17e-11 | 59.3 |
MS.gene21696.t1 | MTR_5g009830 | 28.889 | 135 | 90 | 3 | 8 | 140 | 375 | 505 | 3.10e-11 | 60.1 |
MS.gene21696.t1 | MTR_4g115170 | 33.784 | 148 | 80 | 3 | 8 | 137 | 68 | 215 | 4.11e-11 | 58.9 |
MS.gene21696.t1 | MTR_8g099095 | 30.303 | 132 | 86 | 3 | 8 | 137 | 375 | 502 | 5.92e-11 | 59.3 |
MS.gene21696.t1 | MTR_4g132070 | 28.788 | 132 | 88 | 3 | 8 | 137 | 400 | 527 | 6.14e-11 | 59.3 |
MS.gene21696.t1 | MTR_8g078270 | 29.078 | 141 | 94 | 3 | 2 | 139 | 51 | 188 | 7.75e-11 | 57.4 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene21696.t1 | AT1G18210 | 46.212 | 132 | 67 | 1 | 8 | 139 | 27 | 154 | 1.25e-33 | 116 |
MS.gene21696.t1 | AT1G18210 | 46.212 | 132 | 67 | 1 | 8 | 139 | 27 | 154 | 1.25e-33 | 116 |
MS.gene21696.t1 | AT1G66400 | 42.958 | 142 | 72 | 3 | 1 | 137 | 13 | 150 | 7.65e-30 | 106 |
MS.gene21696.t1 | AT1G73630 | 41.667 | 132 | 73 | 1 | 8 | 139 | 24 | 151 | 1.53e-27 | 100 |
MS.gene21696.t1 | AT5G37770 | 41.844 | 141 | 78 | 2 | 3 | 139 | 16 | 156 | 1.58e-27 | 100 |
MS.gene21696.t1 | AT5G37770 | 41.844 | 141 | 78 | 2 | 3 | 139 | 16 | 156 | 1.58e-27 | 100 |
MS.gene21696.t1 | AT5G17470 | 39.568 | 139 | 78 | 2 | 5 | 139 | 3 | 139 | 6.84e-24 | 90.5 |
MS.gene21696.t1 | AT1G24620 | 35.606 | 132 | 85 | 0 | 8 | 139 | 41 | 172 | 2.50e-23 | 90.1 |
MS.gene21696.t1 | AT2G36180 | 39.855 | 138 | 76 | 2 | 5 | 137 | 1 | 136 | 7.62e-22 | 85.1 |
MS.gene21696.t1 | AT3G07490 | 37.500 | 136 | 83 | 1 | 4 | 137 | 5 | 140 | 1.28e-20 | 82.4 |
MS.gene21696.t1 | AT2G15680 | 36.842 | 133 | 80 | 2 | 8 | 139 | 54 | 183 | 1.46e-20 | 83.2 |
MS.gene21696.t1 | AT1G05990 | 35.338 | 133 | 83 | 2 | 8 | 137 | 9 | 141 | 9.16e-17 | 72.4 |
MS.gene21696.t1 | AT3G03400 | 33.333 | 129 | 84 | 1 | 5 | 131 | 6 | 134 | 1.23e-16 | 71.6 |
MS.gene21696.t1 | AT5G37780 | 30.233 | 129 | 90 | 0 | 9 | 137 | 17 | 145 | 2.02e-16 | 71.2 |
MS.gene21696.t1 | AT1G66410 | 30.233 | 129 | 90 | 0 | 9 | 137 | 17 | 145 | 2.02e-16 | 71.2 |
MS.gene21696.t1 | AT3G43810 | 30.233 | 129 | 90 | 0 | 9 | 137 | 17 | 145 | 7.05e-16 | 70.1 |
MS.gene21696.t1 | AT3G56800 | 30.233 | 129 | 90 | 0 | 9 | 137 | 17 | 145 | 7.20e-16 | 70.1 |
MS.gene21696.t1 | AT2G27030 | 30.233 | 129 | 90 | 0 | 9 | 137 | 17 | 145 | 7.20e-16 | 70.1 |
MS.gene21696.t1 | AT2G41110 | 30.233 | 129 | 90 | 0 | 9 | 137 | 17 | 145 | 7.20e-16 | 70.1 |
MS.gene21696.t1 | AT5G21274 | 30.233 | 129 | 90 | 0 | 9 | 137 | 17 | 145 | 7.59e-16 | 70.1 |
MS.gene21696.t1 | AT1G66410 | 30.275 | 109 | 76 | 0 | 29 | 137 | 1 | 109 | 1.43e-15 | 68.2 |
MS.gene21696.t1 | AT1G66410 | 30.275 | 109 | 76 | 0 | 29 | 137 | 1 | 109 | 1.43e-15 | 68.2 |
MS.gene21696.t1 | AT4G12860 | 33.088 | 136 | 89 | 1 | 4 | 137 | 5 | 140 | 1.50e-15 | 69.3 |
MS.gene21696.t1 | AT2G27030 | 30.233 | 129 | 90 | 0 | 9 | 137 | 17 | 145 | 1.67e-15 | 69.7 |
MS.gene21696.t1 | AT3G43810 | 30.233 | 129 | 90 | 0 | 9 | 137 | 17 | 145 | 3.48e-15 | 69.7 |
MS.gene21696.t1 | AT5G37780 | 30.088 | 113 | 79 | 0 | 25 | 137 | 20 | 132 | 3.65e-15 | 67.8 |
MS.gene21696.t1 | AT3G43810 | 30.275 | 109 | 76 | 0 | 29 | 137 | 1 | 109 | 5.65e-15 | 66.6 |
MS.gene21696.t1 | AT3G43810 | 30.275 | 109 | 76 | 0 | 29 | 137 | 1 | 109 | 5.65e-15 | 66.6 |
MS.gene21696.t1 | AT1G66410 | 30.000 | 110 | 77 | 0 | 28 | 137 | 46 | 155 | 6.25e-15 | 67.8 |
MS.gene21696.t1 | AT5G37780 | 30.088 | 113 | 79 | 0 | 25 | 137 | 48 | 160 | 7.36e-15 | 67.8 |
MS.gene21696.t1 | AT5G37780 | 30.000 | 110 | 77 | 0 | 28 | 137 | 62 | 171 | 9.31e-15 | 67.8 |
MS.gene21696.t1 | AT2G43290 | 32.117 | 137 | 86 | 2 | 8 | 137 | 69 | 205 | 1.29e-14 | 68.2 |
MS.gene21696.t1 | AT4G37010 | 29.927 | 137 | 96 | 0 | 4 | 140 | 27 | 163 | 1.62e-14 | 67.0 |
MS.gene21696.t1 | AT2G41110 | 30.088 | 113 | 79 | 0 | 25 | 137 | 45 | 157 | 1.96e-14 | 66.6 |
MS.gene21696.t1 | AT4G37010 | 29.927 | 137 | 96 | 0 | 4 | 140 | 31 | 167 | 2.01e-14 | 66.6 |
MS.gene21696.t1 | AT3G59440 | 31.618 | 136 | 82 | 3 | 8 | 137 | 55 | 185 | 4.57e-14 | 66.2 |
MS.gene21696.t1 | AT3G22930 | 30.233 | 129 | 90 | 0 | 9 | 137 | 40 | 168 | 7.10e-14 | 65.5 |
MS.gene21696.t1 | AT3G10190 | 33.088 | 136 | 88 | 3 | 4 | 137 | 70 | 204 | 7.93e-14 | 65.9 |
MS.gene21696.t1 | AT4G03290 | 31.159 | 138 | 90 | 2 | 8 | 140 | 9 | 146 | 1.19e-13 | 64.3 |
MS.gene21696.t1 | AT4G20780 | 29.870 | 154 | 88 | 2 | 4 | 137 | 29 | 182 | 1.63e-12 | 62.0 |
MS.gene21696.t1 | AT4G14640 | 29.457 | 129 | 91 | 0 | 9 | 137 | 18 | 146 | 2.03e-12 | 60.8 |
MS.gene21696.t1 | AT2G41100 | 32.414 | 145 | 76 | 3 | 9 | 134 | 17 | 158 | 1.49e-11 | 60.8 |
MS.gene21696.t1 | AT2G41100 | 32.414 | 145 | 76 | 3 | 9 | 134 | 17 | 158 | 1.49e-11 | 60.8 |
MS.gene21696.t1 | AT4G23650 | 28.889 | 135 | 90 | 3 | 8 | 140 | 387 | 517 | 3.17e-11 | 60.1 |
MS.gene21696.t1 | AT3G50360 | 27.737 | 137 | 99 | 0 | 4 | 140 | 27 | 163 | 3.27e-11 | 58.2 |
MS.gene21696.t1 | AT4G14640 | 29.032 | 124 | 85 | 1 | 17 | 137 | 5 | 128 | 5.07e-11 | 57.0 |
Find 23 sgRNAs with CRISPR-Local
Find 21 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
AGAACGATGTGCAGCTCTTT+TGG | 0.236543 | 5.2:-2580865 | None:intergenic |
TGCTTCACCAGATGTCGTTT+TGG | 0.357613 | 5.2:-2580683 | None:intergenic |
TGACAGAAATGTTAACTTTG+AGG | 0.402956 | 5.2:+2580957 | MS.gene21696:CDS |
TGGAACAGATTGATCAGAAC+GGG | 0.406577 | 5.2:+2580716 | MS.gene21696:CDS |
CACATCGTTCTTAATAAACT+TGG | 0.408468 | 5.2:+2580877 | MS.gene21696:CDS |
CCTCAATGACTTTCAGAGAA+TGG | 0.437617 | 5.2:+2580912 | MS.gene21696:CDS |
AGCATAAGTGCAGTGGAAAT+CGG | 0.442473 | 5.2:-2580767 | None:intergenic |
CATGGATCCAAAACGACATC+TGG | 0.459556 | 5.2:+2580676 | MS.gene21696:CDS |
AAAGATCTTTGTCTTAGTGC+TGG | 0.471542 | 5.2:+2580636 | MS.gene21696:CDS |
CGTCCTTGTCGAGGTTGTAA+AGG | 0.474104 | 5.2:-2580831 | None:intergenic |
CAACTACGCCATGGAAGATA+AGG | 0.490365 | 5.2:+2580573 | None:intergenic |
TGCACTTATGCTGCTGCTGT+CGG | 0.543017 | 5.2:+2580778 | MS.gene21696:CDS |
TGGTGAAGCAAAACGCATGA+TGG | 0.544746 | 5.2:+2580696 | MS.gene21696:CDS |
GAAGAAATGCTTTCAACGCA+TGG | 0.563370 | 5.2:+2580658 | MS.gene21696:CDS |
GTTACACACCTTATCTTCCA+TGG | 0.568028 | 5.2:-2580581 | None:intergenic |
CCATTCTCTGAAAGTCATTG+AGG | 0.569417 | 5.2:-2580912 | None:intergenic |
ATGGAACAGATTGATCAGAA+CGG | 0.603193 | 5.2:+2580715 | MS.gene21696:CDS |
CGACCTTTACAACCTCGACA+AGG | 0.609704 | 5.2:+2580828 | MS.gene21696:CDS |
CAGCAGCAGCATAAGTGCAG+TGG | 0.611841 | 5.2:-2580774 | None:intergenic |
CTTTACAACCTCGACAAGGA+CGG | 0.615705 | 5.2:+2580832 | MS.gene21696:CDS |
AGATGAGACCGTCCTTGTCG+AGG | 0.627789 | 5.2:-2580840 | None:intergenic |
AAAGGTCGAAAGCATCGTGA+AGG | 0.659870 | 5.2:-2580813 | None:intergenic |
GGAACAGATTGATCAGAACG+GGG | 0.750470 | 5.2:+2580717 | MS.gene21696:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
CACATCGTTCTTAATAAACT+TGG | + | chr5.2:2580877-2580896 | MS.gene21696:CDS | 30.0% | |
TGACAGAAATGTTAACTTTG+AGG | + | chr5.2:2580957-2580976 | MS.gene21696:CDS | 30.0% | |
AAAGATCTTTGTCTTAGTGC+TGG | + | chr5.2:2580636-2580655 | MS.gene21696:CDS | 35.0% | |
ATGGAACAGATTGATCAGAA+CGG | + | chr5.2:2580715-2580734 | MS.gene21696:CDS | 35.0% | |
AGCATAAGTGCAGTGGAAAT+CGG | - | chr5.2:2580770-2580789 | None:intergenic | 40.0% | |
CCTCAATGACTTTCAGAGAA+TGG | + | chr5.2:2580912-2580931 | MS.gene21696:CDS | 40.0% | |
GAAGAAATGCTTTCAACGCA+TGG | + | chr5.2:2580658-2580677 | MS.gene21696:CDS | 40.0% | |
TGGAACAGATTGATCAGAAC+GGG | + | chr5.2:2580716-2580735 | MS.gene21696:CDS | 40.0% | |
! | CCATTCTCTGAAAGTCATTG+AGG | - | chr5.2:2580915-2580934 | None:intergenic | 40.0% |
CATGGATCCAAAACGACATC+TGG | + | chr5.2:2580676-2580695 | MS.gene21696:CDS | 45.0% | |
CTTTACAACCTCGACAAGGA+CGG | + | chr5.2:2580832-2580851 | MS.gene21696:CDS | 45.0% | |
GGAACAGATTGATCAGAACG+GGG | + | chr5.2:2580717-2580736 | MS.gene21696:CDS | 45.0% | |
TGGTGAAGCAAAACGCATGA+TGG | + | chr5.2:2580696-2580715 | MS.gene21696:CDS | 45.0% | |
! | AGAACGATGTGCAGCTCTTT+TGG | - | chr5.2:2580868-2580887 | None:intergenic | 45.0% |
!! | AAAGGTCGAAAGCATCGTGA+AGG | - | chr5.2:2580816-2580835 | None:intergenic | 45.0% |
!! | TGCTTCACCAGATGTCGTTT+TGG | - | chr5.2:2580686-2580705 | None:intergenic | 45.0% |
CGACCTTTACAACCTCGACA+AGG | + | chr5.2:2580828-2580847 | MS.gene21696:CDS | 50.0% | |
CGTCCTTGTCGAGGTTGTAA+AGG | - | chr5.2:2580834-2580853 | None:intergenic | 50.0% | |
TGCACTTATGCTGCTGCTGT+CGG | + | chr5.2:2580778-2580797 | MS.gene21696:CDS | 50.0% | |
AGATGAGACCGTCCTTGTCG+AGG | - | chr5.2:2580843-2580862 | None:intergenic | 55.0% | |
CAGCAGCAGCATAAGTGCAG+TGG | - | chr5.2:2580777-2580796 | None:intergenic | 55.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr5.2 | gene | 2580583 | 2581005 | 2580583 | ID=MS.gene21696 |
chr5.2 | mRNA | 2580583 | 2581005 | 2580583 | ID=MS.gene21696.t1;Parent=MS.gene21696 |
chr5.2 | exon | 2580583 | 2581005 | 2580583 | ID=MS.gene21696.t1.exon1;Parent=MS.gene21696.t1 |
chr5.2 | CDS | 2580583 | 2581005 | 2580583 | ID=cds.MS.gene21696.t1;Parent=MS.gene21696.t1 |
Gene Sequence |
Protein sequence |