AlfalfaGEDB | MS.gene53650

M. sativa cultivar XinJiangDaYe / MS.gene53650

KEGG: K13448
GO: GO:0003674 GO:0005488 GO:0005509 GO:0043167 GO:0043169 GO:0046872
PFAM: PF13499.9

Nr:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene53650.t1	XP_013467196.1	77.9	140	30	1	1	139	1	140	2.10E-35	158.7

Swissprot:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene53650.t1	Q9LE22	44.5	137	71	1	3	139	22	153	6.1e-23	108.6

Trembl:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene53650.t1	A0A072VHE0	77.9	140	30	1	1	139	1	140	1.5e-35	158.7

TFs/TRs:

Gene ID	Type	Classification

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network:

Gene1	Gene2	correlation coefficient	p_value	FDR

PPI:

Gene1	Gene2	Type
MS.gene062239	MS.gene53650	PPI
MS.gene93763	MS.gene53650	PPI
MS.gene46886	MS.gene53650	PPI
MS.gene026940	MS.gene53650	PPI
MS.gene80714	MS.gene53650	PPI
MS.gene21155	MS.gene53650	PPI
MS.gene71207	MS.gene53650	PPI
MS.gene92775	MS.gene53650	PPI
MS.gene023648	MS.gene53650	PPI
MS.gene07422	MS.gene53650	PPI
MS.gene03228	MS.gene53650	PPI
MS.gene09934	MS.gene53650	PPI
MS.gene96922	MS.gene53650	PPI
MS.gene53650	MS.gene93763	PPI
MS.gene21932	MS.gene53650	PPI
MS.gene28338	MS.gene53650	PPI
MS.gene85596	MS.gene53650	PPI
MS.gene94551	MS.gene53650	PPI
MS.gene027655	MS.gene53650	PPI
MS.gene79028	MS.gene53650	PPI
MS.gene47134	MS.gene53650	PPI
MS.gene056383	MS.gene53650	PPI
MS.gene022455	MS.gene53650	PPI
MS.gene05284	MS.gene53650	PPI
MS.gene015470	MS.gene53650	PPI
MS.gene041795	MS.gene53650	PPI
MS.gene63000	MS.gene53650	PPI
MS.gene53650	MS.gene71511	PPI
MS.gene22553	MS.gene53650	PPI
MS.gene53662	MS.gene53650	PPI
MS.gene057293	MS.gene53650	PPI
MS.gene96914	MS.gene53650	PPI
MS.gene53648	MS.gene53650	PPI
MS.gene017446	MS.gene53650	PPI
MS.gene033361	MS.gene53650	PPI
MS.gene53659	MS.gene53650	PPI
MS.gene038456	MS.gene53650	PPI
MS.gene060446	MS.gene53650	PPI
MS.gene004899	MS.gene53650	PPI
MS.gene009021	MS.gene53650	PPI
MS.gene46237	MS.gene53650	PPI
MS.gene87673	MS.gene53650	PPI
MS.gene98295	MS.gene53650	PPI
MS.gene29793	MS.gene53650	PPI
MS.gene21931	MS.gene53650	PPI
MS.gene074100	MS.gene53650	PPI
MS.gene046988	MS.gene53650	PPI
MS.gene065998	MS.gene53650	PPI
MS.gene001381	MS.gene53650	PPI
MS.gene64316	MS.gene53650	PPI
MS.gene63281	MS.gene53650	PPI
MS.gene53650	MS.gene29459	PPI
MS.gene29794	MS.gene53650	PPI
MS.gene68345	MS.gene53650	PPI
MS.gene44354	MS.gene53650	PPI
MS.gene53650	MS.gene35562	PPI
MS.gene35562	MS.gene53650	PPI
MS.gene89216	MS.gene53650	PPI
MS.gene001246	MS.gene53650	PPI
MS.gene040127	MS.gene53650	PPI
MS.gene62258	MS.gene53650	PPI
MS.gene64310	MS.gene53650	PPI
MS.gene000724	MS.gene53650	PPI
MS.gene64314	MS.gene53650	PPI
MS.gene21696	MS.gene53650	PPI
MS.gene74452	MS.gene53650	PPI
MS.gene64311	MS.gene53650	PPI
MS.gene53650	MS.gene21696	PPI
MS.gene036602	MS.gene53650	PPI
MS.gene27879	MS.gene53650	PPI
MS.gene008831	MS.gene53650	PPI
MS.gene96913	MS.gene53650	PPI
MS.gene040331	MS.gene53650	PPI
MS.gene64317	MS.gene53650	PPI
MS.gene58906	MS.gene53650	PPI
MS.gene71511	MS.gene53650	PPI
MS.gene58860	MS.gene53650	PPI
MS.gene53650	MS.gene64317	PPI
MS.gene98294	MS.gene53650	PPI
MS.gene27516	MS.gene53650	PPI
MS.gene02545	MS.gene53650	PPI
MS.gene053319	MS.gene53650	PPI
MS.gene04915	MS.gene53650	PPI
MS.gene49270	MS.gene53650	PPI
MS.gene97948	MS.gene53650	PPI
MS.gene29459	MS.gene53650	PPI
MS.gene61009	MS.gene53650	PPI
MS.gene64327	MS.gene53650	PPI
MS.gene000738	MS.gene53650	PPI
MS.gene64307	MS.gene53650	PPI
MS.gene53465	MS.gene53650	PPI
MS.gene025797	MS.gene53650	PPI
MS.gene061261	MS.gene53650	PPI
MS.gene026618	MS.gene53650	PPI
MS.gene04917	MS.gene53650	PPI
MS.gene074045	MS.gene53650	PPI
MS.gene47195	MS.gene53650	PPI
MS.gene061768	MS.gene53650	PPI
MS.gene036930	MS.gene53650	PPI
MS.gene013748	MS.gene53650	PPI
MS.gene53650	MS.gene79028	PPI
MS.gene55545	MS.gene53650	PPI
MS.gene65954	MS.gene53650	PPI
MS.gene008225	MS.gene53650	PPI
MS.gene64324	MS.gene53650	PPI
MS.gene011400	MS.gene53650	PPI
MS.gene057167	MS.gene53650	PPI
MS.gene09960	MS.gene53650	PPI
MS.gene024717	MS.gene53650	PPI
MS.gene056461	MS.gene53650	PPI
MS.gene64308	MS.gene53650	PPI
MS.gene64313	MS.gene53650	PPI
MS.gene93087	MS.gene53650	PPI
MS.gene53650	MS.gene64314	PPI
MS.gene35563	MS.gene53650	PPI
MS.gene55496	MS.gene53650	PPI
MS.gene003880	MS.gene53650	PPI
MS.gene54637	MS.gene53650	PPI
MS.gene49271	MS.gene53650	PPI
MS.gene67281	MS.gene53650	PPI
MS.gene62540	MS.gene53650	PPI
MS.gene025777	MS.gene53650	PPI
MS.gene022456	MS.gene53650	PPI

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene53650.t1	MTR_1g047100	82.143	140	25	0	1	140	1	140	1.17e-77	227
MS.gene53650.t1	MTR_1g046950	81.560	141	25	1	1	140	1	141	2.07e-77	226
MS.gene53650.t1	MTR_5g079340	71.429	140	38	1	1	140	1	138	1.04e-66	199
MS.gene53650.t1	MTR_5g008705	71.538	130	36	1	12	141	2	130	5.80e-59	179
MS.gene53650.t1	MTR_3g067610	61.594	138	48	1	3	140	4	136	8.09e-59	179
MS.gene53650.t1	MTR_5g008695	72.807	114	30	1	28	140	1	114	1.50e-52	162
MS.gene53650.t1	MTR_8g107110	56.204	137	58	2	3	139	23	157	4.48e-48	153
MS.gene53650.t1	MTR_6g079570	53.237	139	62	3	3	140	25	161	1.86e-44	144
MS.gene53650.t1	MTR_1g032070	44.604	139	72	2	3	139	45	180	1.72e-36	124
MS.gene53650.t1	MTR_8g105230	40.741	135	75	2	4	136	36	167	1.31e-32	114
MS.gene53650.t1	MTR_4g067270	42.446	139	77	2	3	139	4	141	8.55e-32	111
MS.gene53650.t1	MTR_8g036075	44.898	147	74	3	4	143	49	195	1.52e-31	112
MS.gene53650.t1	MTR_6g023460	41.912	136	69	2	8	139	12	141	3.56e-31	109
MS.gene53650.t1	MTR_7g089760	44.203	138	74	2	4	139	5	141	9.96e-31	108
MS.gene53650.t1	MTR_7g075040	41.497	147	78	4	1	139	44	190	1.73e-28	103
MS.gene53650.t1	MTR_5g088320	37.500	136	84	1	4	139	12	146	2.83e-27	99.8
MS.gene53650.t1	MTR_5g088320	42.857	63	36	0	78	140	12	74	2.31e-11	58.5
MS.gene53650.t1	MTR_6g025320	37.500	136	84	1	4	139	12	146	3.08e-27	99.8
MS.gene53650.t1	MTR_6g025320	42.857	63	36	0	78	140	12	74	2.60e-11	58.2
MS.gene53650.t1	MTR_1g041285	36.691	139	87	1	4	142	12	149	3.42e-27	99.4
MS.gene53650.t1	MTR_7g087610	36.765	136	85	1	4	139	12	146	3.71e-27	99.4
MS.gene53650.t1	MTR_7g087610	42.857	63	36	0	78	140	12	74	3.87e-11	57.8
MS.gene53650.t1	MTR_1g076650	37.956	137	84	1	6	142	14	149	7.06e-27	98.6
MS.gene53650.t1	MTR_4g086260	39.130	138	81	1	3	140	56	190	2.15e-26	98.6
MS.gene53650.t1	MTR_3g089070	37.500	136	75	2	8	139	10	139	4.23e-25	94.0
MS.gene53650.t1	MTR_3g089090	37.500	136	75	2	8	139	9	138	4.54e-25	93.6
MS.gene53650.t1	MTR_4g115170	37.662	154	79	2	3	139	63	216	4.60e-25	95.9
MS.gene53650.t1	MTR_5g017510	39.568	139	79	3	3	139	47	182	7.63e-25	94.4
MS.gene53650.t1	MTR_5g017560	39.568	139	79	3	3	139	47	182	7.63e-25	94.4
MS.gene53650.t1	MTR_1g046960	74.576	59	15	0	28	86	1	59	4.31e-24	90.1
MS.gene53650.t1	MTR_5g017550	37.226	137	84	1	3	139	47	181	1.35e-23	91.3
MS.gene53650.t1	MTR_5g017550	40.845	71	42	0	2	72	118	188	7.45e-11	57.8
MS.gene53650.t1	MTR_4g103650	35.714	140	80	2	4	139	2	135	3.07e-23	89.0
MS.gene53650.t1	MTR_2g098890	38.571	140	83	2	3	139	63	202	3.35e-23	90.9
MS.gene53650.t1	MTR_8g066630	32.609	138	91	1	4	139	17	154	4.73e-23	89.4
MS.gene53650.t1	MTR_4g103630	35.714	140	80	2	4	139	6	139	8.26e-23	87.8
MS.gene53650.t1	MTR_4g112460	31.655	139	94	1	3	140	10	148	1.74e-22	87.8
MS.gene53650.t1	MTR_4g103655	35.000	140	81	2	4	139	6	139	4.26e-22	86.3
MS.gene53650.t1	MTR_7g074240	37.671	146	80	3	5	139	25	170	1.01e-21	86.3
MS.gene53650.t1	MTR_7g090450	35.000	140	87	3	4	139	73	212	1.60e-21	86.7
MS.gene53650.t1	MTR_1g071150	34.058	138	89	1	4	141	12	147	2.74e-21	84.3
MS.gene53650.t1	MTR_0168s0120	36.036	111	70	1	29	139	1	110	3.41e-20	80.5
MS.gene53650.t1	MTR_6g025320	36.036	111	70	1	29	139	1	110	3.41e-20	80.5
MS.gene53650.t1	MTR_3g083470	32.857	140	81	3	1	139	90	217	1.04e-19	82.0
MS.gene53650.t1	MTR_5g027000	31.618	136	90	2	9	143	27	160	5.03e-19	78.6
MS.gene53650.t1	MTR_8g078270	30.657	137	92	2	5	140	54	188	7.08e-19	79.0
MS.gene53650.t1	MTR_8g069915	30.070	143	96	2	2	140	7	149	2.17e-18	77.4
MS.gene53650.t1	MTR_1g030440	33.333	150	85	2	3	143	21	164	3.77e-18	76.6
MS.gene53650.t1	MTR_5g089320	35.507	138	82	3	5	140	374	506	5.31e-18	79.7
MS.gene53650.t1	MTR_7g115040	34.351	131	85	1	9	139	17	146	8.77e-18	75.1
MS.gene53650.t1	MTR_6g007613	31.618	136	92	1	4	139	29	163	1.37e-17	75.1
MS.gene53650.t1	MTR_5g009830	36.429	140	76	4	5	139	372	503	1.92e-17	78.2
MS.gene53650.t1	MTR_8g099095	35.714	140	77	4	5	139	372	503	5.50e-17	77.0
MS.gene53650.t1	MTR_7g074020	30.147	136	94	1	4	139	30	164	7.26e-17	73.6
MS.gene53650.t1	MTR_0028s0170	34.307	137	83	3	5	139	384	515	1.55e-16	75.5
MS.gene53650.t1	MTR_3g051770	35.172	145	78	3	5	139	389	527	4.90e-16	74.3
MS.gene53650.t1	MTR_3g088655	30.921	152	88	4	4	141	8	156	6.78e-16	70.5
MS.gene53650.t1	MTR_5g092810	35.000	140	78	4	5	139	398	529	1.04e-15	73.2
MS.gene53650.t1	MTR_4g132070	33.813	139	81	4	5	139	397	528	2.01e-15	72.4
MS.gene53650.t1	MTR_5g079470	59.649	57	22	1	8	64	14	69	2.14e-15	67.4
MS.gene53650.t1	MTR_5g011850	30.070	143	93	4	2	140	7	146	8.96e-15	67.4
MS.gene53650.t1	MTR_1g026190	32.847	137	85	3	5	139	388	519	2.56e-14	69.3
MS.gene53650.t1	MTR_6g007613	30.328	122	84	1	4	125	29	149	3.15e-14	66.2
MS.gene53650.t1	MTR_7g074020	29.167	120	84	1	4	123	30	148	8.83e-14	65.1
MS.gene53650.t1	MTR_7g068710	29.927	137	94	1	3	139	360	494	1.27e-13	67.4
MS.gene53650.t1	MTR_7g091890	33.588	131	85	1	9	139	368	496	5.78e-13	65.5
MS.gene53650.t1	MTR_4g107490	31.618	136	89	3	5	139	379	511	1.03e-12	64.7
MS.gene53650.t1	MTR_5g022030	30.147	136	84	4	9	139	411	540	1.89e-12	63.9
MS.gene53650.t1	MTR_3g055570	28.261	138	83	1	4	141	52	173	2.72e-12	61.6
MS.gene53650.t1	MTR_3g098460	29.323	133	87	1	4	136	33	158	4.85e-12	62.8
MS.gene53650.t1	MTR_8g096050	28.571	140	93	1	2	141	53	185	6.29e-12	62.4
MS.gene53650.t1	MTR_4g132040	33.571	140	80	5	5	139	401	532	1.99e-11	60.8

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene53650.t1	AT1G18210	52.899	138	60	2	3	140	22	154	4.54e-46	148
MS.gene53650.t1	AT1G18210	52.899	138	60	2	3	140	22	154	4.54e-46	148
MS.gene53650.t1	AT1G73630	51.799	139	62	2	2	140	18	151	8.41e-45	144
MS.gene53650.t1	AT1G66400	48.571	140	71	1	3	141	14	153	7.65e-44	142
MS.gene53650.t1	AT5G37770	48.936	141	69	3	3	140	16	156	1.06e-40	134
MS.gene53650.t1	AT5G37770	48.936	141	69	3	3	140	16	156	1.06e-40	134
MS.gene53650.t1	AT1G24620	42.857	140	75	2	4	141	37	173	4.10e-34	118
MS.gene53650.t1	AT5G17470	43.885	139	73	2	5	140	3	139	1.48e-33	115
MS.gene53650.t1	AT2G15680	43.478	138	75	1	3	140	49	183	1.52e-32	114
MS.gene53650.t1	AT1G05990	42.029	138	78	1	4	139	5	142	1.52e-32	113
MS.gene53650.t1	AT3G07490	46.377	138	71	2	4	139	5	141	4.41e-32	112
MS.gene53650.t1	AT2G36180	44.853	136	69	2	8	139	4	137	1.35e-31	110
MS.gene53650.t1	AT4G03290	40.000	140	80	2	4	139	5	144	3.78e-29	104
MS.gene53650.t1	AT4G12860	41.304	138	78	2	4	139	5	141	4.82e-28	101
MS.gene53650.t1	AT2G43290	39.437	142	80	2	4	139	65	206	7.22e-28	103
MS.gene53650.t1	AT5G37780	37.500	136	84	1	4	139	12	146	1.27e-27	100
MS.gene53650.t1	AT5G37780	42.857	63	36	0	78	140	12	74	2.35e-11	58.5
MS.gene53650.t1	AT1G66410	37.500	136	84	1	4	139	12	146	1.27e-27	100
MS.gene53650.t1	AT1G66410	42.857	63	36	0	78	140	12	74	2.35e-11	58.5
MS.gene53650.t1	AT5G21274	38.235	136	83	1	4	139	12	146	1.39e-27	100
MS.gene53650.t1	AT5G21274	42.857	63	36	0	78	140	12	74	2.66e-11	58.5
MS.gene53650.t1	AT3G03400	39.683	126	75	1	8	132	9	134	1.61e-27	100
MS.gene53650.t1	AT3G43810	37.500	136	84	1	4	139	12	146	3.23e-27	99.8
MS.gene53650.t1	AT3G43810	42.857	63	36	0	78	140	12	74	2.72e-11	58.2
MS.gene53650.t1	AT3G56800	37.500	136	84	1	4	139	12	146	3.41e-27	99.4
MS.gene53650.t1	AT3G56800	42.857	63	36	0	78	140	12	74	2.72e-11	58.2
MS.gene53650.t1	AT2G27030	37.500	136	84	1	4	139	12	146	3.41e-27	99.4
MS.gene53650.t1	AT2G27030	42.857	63	36	0	78	140	12	74	2.72e-11	58.2
MS.gene53650.t1	AT2G41110	37.500	136	84	1	4	139	12	146	3.41e-27	99.4
MS.gene53650.t1	AT2G41110	42.857	63	36	0	78	140	12	74	2.72e-11	58.2
MS.gene53650.t1	AT3G59440	39.130	138	80	2	4	139	51	186	5.09e-27	100
MS.gene53650.t1	AT2G27030	37.500	136	84	1	4	139	12	146	1.24e-26	99.0
MS.gene53650.t1	AT2G27030	42.857	63	36	0	78	140	12	74	5.45e-11	58.2
MS.gene53650.t1	AT3G43810	37.500	136	84	1	4	139	12	146	3.17e-26	99.0
MS.gene53650.t1	AT3G43810	42.857	63	36	0	78	140	12	74	7.19e-11	58.2
MS.gene53650.t1	AT3G22930	36.957	138	86	1	4	141	35	171	4.27e-26	97.4
MS.gene53650.t1	AT3G10190	39.130	138	80	3	4	139	70	205	1.24e-25	97.1
MS.gene53650.t1	AT4G14640	36.765	136	85	1	4	139	13	147	1.86e-24	92.4
MS.gene53650.t1	AT4G37010	36.029	136	86	1	4	139	27	161	5.69e-24	91.7
MS.gene53650.t1	AT4G37010	36.029	136	86	1	4	139	31	165	6.62e-24	91.7
MS.gene53650.t1	AT2G41110	34.459	148	84	2	4	139	12	158	7.62e-24	91.3
MS.gene53650.t1	AT5G37780	33.775	151	84	2	4	139	12	161	1.41e-23	90.5
MS.gene53650.t1	AT2G41100	34.395	157	84	3	4	144	66	219	1.56e-23	93.6
MS.gene53650.t1	AT2G41100	34.375	128	69	3	28	140	1	128	4.84e-15	70.5
MS.gene53650.t1	AT2G41100	34.395	157	84	3	4	144	66	219	1.56e-23	93.6
MS.gene53650.t1	AT2G41100	34.375	128	69	3	28	140	1	128	4.84e-15	70.5
MS.gene53650.t1	AT2G41100	34.395	157	84	3	4	144	66	219	1.56e-23	93.6
MS.gene53650.t1	AT2G41100	34.375	128	69	3	28	140	1	128	4.84e-15	70.5
MS.gene53650.t1	AT2G41100	34.395	157	84	3	4	144	101	254	2.64e-23	93.2
MS.gene53650.t1	AT2G41100	37.500	152	80	3	4	140	12	163	3.35e-23	93.2
MS.gene53650.t1	AT2G41100	34.395	157	84	3	4	144	101	254	2.64e-23	93.2
MS.gene53650.t1	AT2G41100	37.500	152	80	3	4	140	12	163	3.35e-23	93.2
MS.gene53650.t1	AT1G32250	33.099	142	90	2	3	139	15	156	1.72e-22	87.8
MS.gene53650.t1	AT5G37780	36.066	122	77	1	18	139	13	133	2.73e-22	86.7
MS.gene53650.t1	AT1G66410	36.066	122	77	1	18	139	36	156	5.98e-22	86.3
MS.gene53650.t1	AT5G37780	36.066	122	77	1	18	139	52	172	7.53e-22	86.7
MS.gene53650.t1	AT5G42380	33.577	137	91	0	3	139	48	184	1.53e-21	85.9
MS.gene53650.t1	AT3G50360	32.353	136	91	1	4	139	27	161	1.89e-21	85.1
MS.gene53650.t1	AT3G50770	30.070	143	96	2	3	141	63	205	6.34e-21	84.7
MS.gene53650.t1	AT1G18530	29.861	144	97	2	1	140	1	144	7.27e-21	83.6
MS.gene53650.t1	AT4G20780	33.544	158	86	2	5	143	30	187	7.31e-21	84.3
MS.gene53650.t1	AT1G66410	36.036	111	70	1	29	139	1	110	1.40e-20	81.6
MS.gene53650.t1	AT1G66410	36.036	111	70	1	29	139	1	110	1.40e-20	81.6
MS.gene53650.t1	AT3G43810	36.036	111	70	1	29	139	1	110	3.57e-20	80.5
MS.gene53650.t1	AT3G43810	36.036	111	70	1	29	139	1	110	3.57e-20	80.5
MS.gene53650.t1	AT2G41090	34.559	136	85	2	4	139	12	143	6.63e-20	82.0
MS.gene53650.t1	AT1G76650	33.824	136	88	1	4	139	43	176	7.59e-20	81.3
MS.gene53650.t1	AT1G76650	33.824	136	88	1	4	139	43	176	7.59e-20	81.3
MS.gene53650.t1	AT1G76640	33.577	137	90	1	4	139	22	158	7.65e-20	80.9
MS.gene53650.t1	AT4G14640	35.246	122	78	1	18	139	9	129	9.20e-20	80.1
MS.gene53650.t1	AT2G41410	32.609	138	91	2	4	139	70	207	1.67e-19	81.3
MS.gene53650.t1	AT1G21550	36.000	150	77	4	3	139	9	152	2.49e-18	77.0
MS.gene53650.t1	AT3G51920	29.078	141	96	2	2	139	7	146	2.97e-18	76.6
MS.gene53650.t1	AT5G44460	34.014	147	86	2	8	143	32	178	4.99e-18	76.6
MS.gene53650.t1	AT3G25600	28.261	138	98	1	4	140	12	149	7.14e-18	75.9
MS.gene53650.t1	AT4G23650	35.714	140	77	4	5	139	384	515	9.24e-18	79.3
MS.gene53650.t1	AT1G76650	33.824	136	78	2	4	139	43	166	9.26e-18	75.9
MS.gene53650.t1	AT3G03410	29.496	139	85	2	6	144	4	129	1.27e-17	74.3
MS.gene53650.t1	AT4G04695	34.815	135	85	2	5	139	337	468	1.52e-17	78.6
MS.gene53650.t1	AT5G19360	35.766	137	81	3	5	139	374	505	7.30e-17	76.6
MS.gene53650.t1	AT3G03000	31.690	142	85	2	4	139	20	155	2.56e-16	72.0
MS.gene53650.t1	AT4G04700	34.074	135	86	2	5	139	337	468	2.58e-16	75.1
MS.gene53650.t1	AT5G12180	35.036	137	82	3	5	139	379	510	4.05e-16	74.7
MS.gene53650.t1	AT3G51850	31.387	137	92	1	3	139	358	492	7.38e-16	73.9
MS.gene53650.t1	AT4G04740	34.307	137	83	3	5	139	374	505	1.59e-15	72.8
MS.gene53650.t1	AT4G04740	34.307	137	83	3	5	139	374	505	1.59e-15	72.8
MS.gene53650.t1	AT4G04740	34.307	137	83	3	5	139	374	505	1.59e-15	72.8
MS.gene53650.t1	AT4G04740	34.307	137	83	3	5	139	374	505	1.59e-15	72.8
MS.gene53650.t1	AT4G04740	34.307	137	83	3	5	139	374	505	1.59e-15	72.8
MS.gene53650.t1	AT4G04740	34.307	137	83	3	5	139	374	505	1.59e-15	72.8
MS.gene53650.t1	AT1G61950	34.722	144	73	4	5	139	405	536	1.60e-15	72.8
MS.gene53650.t1	AT5G17480	59.649	57	22	1	8	64	13	68	2.54e-15	67.0
MS.gene53650.t1	AT2G41100	33.058	121	65	2	31	135	3	123	3.03e-15	69.7
MS.gene53650.t1	AT4G04720	34.307	137	83	3	5	139	385	516	3.30e-15	72.0
MS.gene53650.t1	AT4G04720	34.307	137	83	3	5	139	385	516	3.30e-15	72.0
MS.gene53650.t1	AT1G50700	35.714	140	77	5	5	139	379	510	3.35e-15	72.0
MS.gene53650.t1	AT4G21940	34.307	137	83	3	5	139	407	538	4.17e-15	71.6
MS.gene53650.t1	AT3G20410	36.429	140	76	5	5	139	397	528	4.52e-15	71.6
MS.gene53650.t1	AT3G20410	36.429	140	76	5	5	139	397	528	4.52e-15	71.6
MS.gene53650.t1	AT4G21940	34.307	137	83	3	5	139	407	538	4.54e-15	71.6
MS.gene53650.t1	AT3G01830	32.143	140	88	5	3	139	10	145	6.60e-15	67.8
MS.gene53650.t1	AT1G62820	30.070	143	93	4	2	140	8	147	1.85e-14	66.6
MS.gene53650.t1	AT1G12310	30.070	143	93	4	2	140	8	147	2.34e-14	66.2
MS.gene53650.t1	AT5G66210	32.624	141	84	4	4	139	369	503	2.62e-14	69.3
MS.gene53650.t1	AT5G66210	32.624	141	84	4	4	139	369	503	2.62e-14	69.3
MS.gene53650.t1	AT1G74740	36.765	136	82	3	5	139	365	497	6.80e-14	68.2
MS.gene53650.t1	AT3G10660	30.496	141	82	4	5	139	492	622	1.29e-13	67.4
MS.gene53650.t1	AT3G10660	30.496	141	82	4	5	139	492	622	1.29e-13	67.4
MS.gene53650.t1	AT1G76040	34.286	140	79	4	5	139	179	310	1.97e-13	66.2
MS.gene53650.t1	AT1G76040	34.286	140	79	4	5	139	179	310	1.97e-13	66.2
MS.gene53650.t1	AT1G76040	34.286	140	79	4	5	139	417	548	4.08e-13	65.9
MS.gene53650.t1	AT2G17890	29.932	147	80	5	4	139	415	549	4.42e-13	65.9
MS.gene53650.t1	AT4G36070	30.282	142	88	5	3	139	377	512	7.27e-13	65.1
MS.gene53650.t1	AT3G03430	49.254	67	29	2	8	74	13	74	8.20e-13	60.5
MS.gene53650.t1	AT4G36070	30.282	142	88	5	3	139	377	512	8.24e-13	65.1
MS.gene53650.t1	AT3G22930	33.333	96	63	1	4	99	35	129	1.43e-12	61.2
MS.gene53650.t1	AT5G51050	29.286	140	92	1	2	141	49	181	1.46e-12	64.3
MS.gene53650.t1	AT4G04710	32.624	141	80	4	5	139	338	469	2.29e-12	63.5
MS.gene53650.t1	AT4G04710	33.094	139	82	4	5	139	324	455	2.34e-12	63.5
MS.gene53650.t1	AT4G04710	32.624	141	80	4	5	139	351	482	2.46e-12	63.5
MS.gene53650.t1	AT3G57530	32.353	136	87	3	5	139	369	500	4.50e-12	62.8
MS.gene53650.t1	AT5G07320	27.007	137	93	1	5	141	38	167	5.32e-12	62.8
MS.gene53650.t1	AT1G18890	34.058	138	83	4	5	139	369	501	5.52e-12	62.8
MS.gene53650.t1	AT2G41860	30.370	135	92	1	5	139	360	492	1.28e-11	61.6
MS.gene53650.t1	AT2G41860	30.370	135	92	1	5	139	360	492	1.44e-11	61.6
MS.gene53650.t1	AT5G04870	30.496	141	82	4	5	139	456	586	2.76e-11	60.8
MS.gene53650.t1	AT4G04710	32.168	143	80	5	5	139	351	484	3.87e-11	60.1
MS.gene53650.t1	AT5G66210	35.577	104	62	3	4	102	369	472	5.35e-11	59.7
MS.gene53650.t1	AT5G12480	30.147	136	92	2	5	139	271	404	5.52e-11	59.7
MS.gene53650.t1	AT4G14640	31.959	97	65	1	4	100	13	108	5.74e-11	57.0
MS.gene53650.t1	AT5G12480	30.147	136	92	2	5	139	365	498	5.99e-11	59.7
MS.gene53650.t1	AT1G35670	32.215	149	89	4	5	149	332	472	6.01e-11	59.7
MS.gene53650.t1	AT5G66210	33.628	113	70	3	4	111	369	481	6.23e-11	59.7
MS.gene53650.t1	AT1G50700	30.120	166	77	6	5	139	379	536	9.01e-11	59.3
MS.gene53650.t1	AT4G09570	32.215	149	89	4	5	149	331	471	9.21e-11	59.3

Find 34 sgRNAs with CRISPR-Local

Find 31 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
TACTTCATCAGAGGTCGATT+TGG	0.331853	1.2:-29877287	None:intergenic
AACTATGCTGCTGCTGCCAC+TGG	0.375884	1.2:+29877385	MS.gene53650:CDS
ATGGAACATATTGATCAAAA+TGG	0.388502	1.2:+29877319	MS.gene53650:CDS
GAACAAATGCTTTCGACGCT+TGG	0.406787	1.2:+29877262	MS.gene53650:CDS
AAAGATCTCTGTCTCGGAAC+TGG	0.409847	1.2:+29877240	MS.gene53650:CDS
TTCACATTCTTGACATTACT+AGG	0.410686	1.2:-29877618	None:intergenic
CACATCGTTCTTAACAAACT+TGG	0.425233	1.2:+29877484	MS.gene53650:CDS
GAAGATGATAGCAATTCTGC+TGG	0.507702	1.2:+29877594	MS.gene53650:CDS
TGCTGCTGCCACTGGGAATG+AGG	0.519298	1.2:+29877393	MS.gene53650:CDS
ACTATGCTGCTGCTGCCACT+GGG	0.526686	1.2:+29877386	MS.gene53650:CDS
GCTACGCACCTCGTCGTCCA+TGG	0.547679	1.2:-29877185	None:intergenic
AAGTTTGACAAGAACGGTGA+TGG	0.550047	1.2:+29877217	MS.gene53650:CDS
AAGGTTGACGCGGATGGAGA+TGG	0.551637	1.2:+29877547	MS.gene53650:CDS
CGACCTTTACGACCTTGACA+AGG	0.551708	1.2:+29877435	MS.gene53650:CDS
ATAAGCAAGGTTGACGCGGA+TGG	0.557348	1.2:+29877541	MS.gene53650:CDS
TGATGAAGTAAAGCAACTGA+TGG	0.558985	1.2:+29877300	MS.gene53650:CDS
AGATGGAAAAGTTAACTTTG+AGG	0.561239	1.2:+29877564	MS.gene53650:CDS
CGTCCTTGTCAAGGTCGTAA+AGG	0.562736	1.2:-29877438	None:intergenic
TTCAACAAGTTTGACAAGAA+CGG	0.572048	1.2:+29877211	MS.gene53650:CDS
CAGCAGCAGCATAGTTGCAG+TGG	0.580581	1.2:-29877378	None:intergenic
TGATGGAAAGATCTCTGTCT+CGG	0.582706	1.2:+29877234	MS.gene53650:CDS
CAGTTGCTTTACTTCATCAG+AGG	0.584243	1.2:-29877296	None:intergenic
AGAACGATGTGCAGTTCTGT+GGG	0.590061	1.2:-29877472	None:intergenic
CATATTGATCAAAATGGTGA+CGG	0.599966	1.2:+29877325	MS.gene53650:CDS
AGATGAGACCGTCCTTGTCA+AGG	0.608858	1.2:-29877447	None:intergenic
CATTCTCTGACAATCACTGA+GGG	0.618753	1.2:-29877518	None:intergenic
AAGAACGATGTGCAGTTCTG+TGG	0.629284	1.2:-29877473	None:intergenic
CTTTACGACCTTGACAAGGA+CGG	0.640370	1.2:+29877439	MS.gene53650:CDS
AATGATAAGCAAGGTTGACG+CGG	0.647152	1.2:+29877537	MS.gene53650:CDS
AAGATGATAGCAATTCTGCT+GGG	0.650478	1.2:+29877595	MS.gene53650:CDS
CAACTACGCCATGGACGACG+AGG	0.653695	1.2:+29877177	None:intergenic
TTGTCAGAGAATGATAAGCA+AGG	0.687328	1.2:+29877528	MS.gene53650:CDS
TCATTCTCTGACAATCACTG+AGG	0.714288	1.2:-29877519	None:intergenic
AATCTCGACCTCATTCCCAG+TGG	0.761213	1.2:-29877401	None:intergenic

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!	ATGGAACATATTGATCAAAA+TGG	+	chr1.2:29877319-29877338	MS.gene53650:CDS	25.0%
	AGATGGAAAAGTTAACTTTG+AGG	+	chr1.2:29877564-29877583	MS.gene53650:CDS	30.0%
	CATATTGATCAAAATGGTGA+CGG	+	chr1.2:29877325-29877344	MS.gene53650:CDS	30.0%
	TTCAACAAGTTTGACAAGAA+CGG	+	chr1.2:29877211-29877230	MS.gene53650:CDS	30.0%
	AAGATGATAGCAATTCTGCT+GGG	+	chr1.2:29877595-29877614	MS.gene53650:CDS	35.0%
	CACATCGTTCTTAACAAACT+TGG	+	chr1.2:29877484-29877503	MS.gene53650:CDS	35.0%
	TGATGAAGTAAAGCAACTGA+TGG	+	chr1.2:29877300-29877319	MS.gene53650:CDS	35.0%
	TTGTCAGAGAATGATAAGCA+AGG	+	chr1.2:29877528-29877547	MS.gene53650:CDS	35.0%
	AAGTTTGACAAGAACGGTGA+TGG	+	chr1.2:29877217-29877236	MS.gene53650:CDS	40.0%
	AATGATAAGCAAGGTTGACG+CGG	+	chr1.2:29877537-29877556	MS.gene53650:CDS	40.0%
	CATTCTCTGACAATCACTGA+GGG	-	chr1.2:29877521-29877540	None:intergenic	40.0%
	GAAGATGATAGCAATTCTGC+TGG	+	chr1.2:29877594-29877613	MS.gene53650:CDS	40.0%
	TACTTCATCAGAGGTCGATT+TGG	-	chr1.2:29877290-29877309	None:intergenic	40.0%
	TCATTCTCTGACAATCACTG+AGG	-	chr1.2:29877522-29877541	None:intergenic	40.0%
	TGATGGAAAGATCTCTGTCT+CGG	+	chr1.2:29877234-29877253	MS.gene53650:CDS	40.0%
!	CAGTTGCTTTACTTCATCAG+AGG	-	chr1.2:29877299-29877318	None:intergenic	40.0%
	AAAGATCTCTGTCTCGGAAC+TGG	+	chr1.2:29877240-29877259	MS.gene53650:CDS	45.0%
	AAGAACGATGTGCAGTTCTG+TGG	-	chr1.2:29877476-29877495	None:intergenic	45.0%
	AGAACGATGTGCAGTTCTGT+GGG	-	chr1.2:29877475-29877494	None:intergenic	45.0%
	CTTTACGACCTTGACAAGGA+CGG	+	chr1.2:29877439-29877458	MS.gene53650:CDS	45.0%
	GAACAAATGCTTTCGACGCT+TGG	+	chr1.2:29877262-29877281	MS.gene53650:CDS	45.0%
	AATCTCGACCTCATTCCCAG+TGG	-	chr1.2:29877404-29877423	None:intergenic	50.0%
	AGATGAGACCGTCCTTGTCA+AGG	-	chr1.2:29877450-29877469	None:intergenic	50.0%
	ATAAGCAAGGTTGACGCGGA+TGG	+	chr1.2:29877541-29877560	MS.gene53650:CDS	50.0%
	CGACCTTTACGACCTTGACA+AGG	+	chr1.2:29877435-29877454	MS.gene53650:CDS	50.0%
	CGTCCTTGTCAAGGTCGTAA+AGG	-	chr1.2:29877441-29877460	None:intergenic	50.0%
	AACTATGCTGCTGCTGCCAC+TGG	+	chr1.2:29877385-29877404	MS.gene53650:CDS	55.0%
	AAGGTTGACGCGGATGGAGA+TGG	+	chr1.2:29877547-29877566	MS.gene53650:CDS	55.0%
	ACTATGCTGCTGCTGCCACT+GGG	+	chr1.2:29877386-29877405	MS.gene53650:CDS	55.0%
	CAGCAGCAGCATAGTTGCAG+TGG	-	chr1.2:29877381-29877400	None:intergenic	55.0%
	TGCTGCTGCCACTGGGAATG+AGG	+	chr1.2:29877393-29877412	MS.gene53650:CDS	60.0%

Chromosome	Type	Strat	End	Strand	Name
chr1.2	gene	29877187	29877639	29877187	ID=MS.gene53650
chr1.2	mRNA	29877187	29877639	29877187	ID=MS.gene53650.t1;Parent=MS.gene53650
chr1.2	exon	29877187	29877639	29877187	ID=MS.gene53650.t1.exon1;Parent=MS.gene53650.t1
chr1.2	CDS	29877187	29877639	29877187	ID=cds.MS.gene53650.t1;Parent=MS.gene53650.t1

Gene Sequence

>MS.gene53650

ATGGACGACGAGGTGCGTAGCATCTTCAACAAGTTTGACAAGAACGGTGATGGAAAGATCTCTGTCTCGGAACTGGAACAAATGCTTTCGACGCTTGGATCCAAATCGACCTCTGATGAAGTAAAGCAACTGATGGAACATATTGATCAAAATGGTGACGGTTACATTGATCTCAAAGAATTTGCTTATTTCCACTGCAACTATGCTGCTGCTGCCACTGGGAATGAGGTCGAGATTCGTGATGCTTTCGACCTTTACGACCTTGACAAGGACGGTCTCATCTCTCCCACAGAACTGCACATCGTTCTTAACAAACTTGGTGAGAAGTACTCCCTCAGTGATTGTCAGAGAATGATAAGCAAGGTTGACGCGGATGGAGATGGAAAAGTTAACTTTGAGGAGTTCAAGAAGATGATAGCAATTCTGCTGGGCCTAGTAATGTCAAGAATGTGA

Protein sequence

>MS.gene53650.t1

MDDEVRSIFNKFDKNGDGKISVSELEQMLSTLGSKSTSDEVKQLMEHIDQNGDGYIDLKEFAYFHCNYAAAATGNEVEIRDAFDLYDLDKDGLISPTELHIVLNKLGEKYSLSDCQRMISKVDADGDGKVNFEEFKKMIAILLGLVMSRM