AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene54238


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene54238.t1 MTR_1g077100 71.818 110 26 2 1 107 1 108 1.39e-45 156
MS.gene54238.t1 MTR_4g055725 36.032 247 138 4 135 380 38 265 1.23e-43 155
MS.gene54238.t1 MTR_4g117120 35.928 167 103 3 143 309 122 284 1.98e-24 105
MS.gene54238.t1 MTR_5g022570 54.118 85 36 2 25 107 193 276 9.48e-20 90.1
MS.gene54238.t1 MTR_7g056633 41.584 101 59 0 175 275 32 132 4.11e-19 84.3
MS.gene54238.t1 MTR_7g094990 30.387 181 114 4 135 309 33 207 1.04e-17 85.9
MS.gene54238.t1 MTR_8g463880 40.000 115 64 2 147 258 35 147 2.73e-17 79.3
MS.gene54238.t1 MTR_4g117940 32.258 155 97 2 130 279 25 176 6.74e-16 76.3
MS.gene54238.t1 MTR_5g063300 37.113 97 60 1 176 271 51 147 1.73e-12 65.5
MS.gene54238.t1 MTR_1g024830 47.692 65 33 1 43 107 264 327 2.97e-12 68.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene54238.t1 AT5G41980 43.099 355 176 6 163 507 30 368 2.65e-93 289
MS.gene54238.t1 AT1G43722 32.692 312 194 7 121 421 13 319 4.13e-42 153
MS.gene54238.t1 AT5G28730 32.328 232 126 4 175 401 24 229 1.15e-31 124
MS.gene54238.t1 AT5G35695 45.926 135 61 1 323 457 25 147 6.14e-31 119
MS.gene54238.t1 AT5G28950 46.875 96 51 0 257 352 1 96 3.80e-24 99.0
MS.gene54238.t1 AT3G30525 33.750 160 99 3 285 439 1 158 2.16e-19 85.9

Find 109 sgRNAs with CRISPR-Local

Find 167 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTGACGACTTCTTGAATAAA+TGG 0.143416 6.2:+70154570 MS.gene54238:CDS
CTAGCACTGTTGAGAATTTC+TGG 0.157165 6.2:-70153467 None:intergenic
AACAACTCCTTTGCATTTCT+TGG 0.218146 6.2:-70154239 None:intergenic
CTTCTGTATTTAAGTATTCT+TGG 0.218368 6.2:-70154151 None:intergenic
ACCCAGGAGATGTGGATTTA+TGG 0.249166 6.2:+70153142 MS.gene54238:CDS
GACTGGTTATTCAGTAGTTT+AGG 0.261552 6.2:+70154431 MS.gene54238:CDS
CACCGACTCACGGGTGTTAA+AGG 0.267503 6.2:+70153789 MS.gene54238:CDS
ATGAAAACCTCCCGGGCATT+AGG 0.298800 6.2:-70152667 None:intergenic
ATCATTCAGACCTTGAAATA+TGG 0.304552 6.2:-70153497 None:intergenic
AATGAGAATGCAACCTGTTC+TGG 0.328101 6.2:-70154521 None:intergenic
TGAACGTAATAGAGTGATTC+AGG 0.333897 6.2:+70153334 MS.gene54238:CDS
GATGATGAGGATGGTTCTTC+AGG 0.349700 6.2:+70152376 MS.gene54238:CDS
CTATTATTTCAGGATTGTAT+AGG 0.362544 6.2:+70153613 MS.gene54238:intron
ACTGGTTATTCAGTAGTTTA+GGG 0.364419 6.2:+70154432 MS.gene54238:CDS
GCAAATTCCTGCACATGTTC+CGG 0.367277 6.2:+70153651 MS.gene54238:CDS
AAGAGGGGCCGAAAAGCTTC+TGG 0.377408 6.2:+70152469 MS.gene54238:CDS
CAAAGGAGTTGTTCAATCAT+AGG 0.383328 6.2:+70154249 MS.gene54238:CDS
GAACTCGTTGCGGCTGCTGC+TGG 0.386586 6.2:+70153071 MS.gene54238:CDS
TGCCATAAATCCACATCTCC+TGG 0.393862 6.2:-70153144 None:intergenic
CAGCTAGTGGTGGTCGGAAG+AGG 0.397609 6.2:+70152452 MS.gene54238:CDS
GCGAAATCGAGATTGATCTT+TGG 0.398795 6.2:-70153674 None:intergenic
ACCAGTCATTTCTTTCTTCA+CGG 0.401217 6.2:-70154415 None:intergenic
ATTTGTGGGAAATTCTGATC+TGG 0.404418 6.2:-70153826 None:intergenic
CTGCATCATGGCATCCACTA+TGG 0.407457 6.2:-70152497 None:intergenic
TGAAAACCTCCCGGGCATTA+GGG 0.410829 6.2:-70152666 None:intergenic
TATTTCTTCAATACCAGAAC+AGG 0.414037 6.2:+70154508 MS.gene54238:CDS
TATCACGTAACATGGCTCTT+TGG 0.418711 6.2:-70153253 None:intergenic
TACCAACCTTATGAGTTTAG+AGG 0.421610 6.2:+70154203 MS.gene54238:CDS
TGACGACTTCTTGAATAAAT+GGG 0.432370 6.2:+70154571 MS.gene54238:CDS
TGAGGAGCAAGTTTCATGAT+TGG 0.432849 6.2:-70154329 None:intergenic
AACGAACCTTGAGGAATTTG+TGG 0.440004 6.2:-70153841 None:intergenic
TCAATACATTATTAAAATGT+CGG 0.443527 6.2:-70153388 None:intergenic
GAAGAAATAAATTGAACATC+GGG 0.447295 6.2:-70154494 None:intergenic
AGCTAGTGGTGGTCGGAAGA+GGG 0.455554 6.2:+70152453 MS.gene54238:CDS
GCCATGTTACGTGATACTTC+TGG 0.460394 6.2:+70153260 MS.gene54238:CDS
TCACTCTATTACGTTCACTA+TGG 0.463287 6.2:-70153328 None:intergenic
GGGTGATATTGACATGGAAT+TGG 0.463892 6.2:+70153040 MS.gene54238:CDS
TCTGGTGATGTTGTATCCTC+AGG 0.466979 6.2:-70153449 None:intergenic
GAGGAGCAAGTTTCATGATT+GGG 0.469428 6.2:-70154328 None:intergenic
TGAACATCGGGAAGTTCGTC+AGG 0.474711 6.2:-70154482 None:intergenic
CTCTTCCGACCACCACTAGC+TGG 0.483214 6.2:-70152451 None:intergenic
TCTTTGGCCGGAACATGTGC+AGG 0.489674 6.2:-70153658 None:intergenic
ATCTGAGAAATACTATCTTA+AGG 0.491213 6.2:+70154279 MS.gene54238:CDS
GAGGATGGTTCTTCAGGCTC+AGG 0.500473 6.2:+70152382 MS.gene54238:CDS
ACGAACCTTGAGGAATTTGT+GGG 0.504423 6.2:-70153840 None:intergenic
TTGAGAATCACCCTAATGCC+CGG 0.506051 6.2:+70152656 MS.gene54238:CDS
TGACATGGAATTGGATGAGA+TGG 0.507251 6.2:+70153049 MS.gene54238:CDS
GATGCAAGGTCTTGATGAAA+GGG 0.513593 6.2:+70152609 MS.gene54238:CDS
TTTGTGGGAAATTCTGATCT+GGG 0.513968 6.2:-70153825 None:intergenic
TTAGCACCTCTAAACTCATA+AGG 0.519230 6.2:-70154209 None:intergenic
TGGTACCGAACCCCTTGAAA+AGG 0.519547 6.2:-70154185 None:intergenic
TCTCGATTTCGCAATAAGAA+AGG 0.526197 6.2:+70153685 MS.gene54238:CDS
CACGTAACATGGCTCTTTGG+CGG 0.527673 6.2:-70153250 None:intergenic
ACTCCTTTGCATTTCTTGGT+AGG 0.527692 6.2:-70154235 None:intergenic
TACAGATACACCAATCAGCA+TGG 0.529586 6.2:+70153019 MS.gene54238:CDS
AGATGCAAGGTCTTGATGAA+AGG 0.540422 6.2:+70152608 MS.gene54238:CDS
AATTCTGATCTGGGTCATCA+AGG 0.542424 6.2:-70153816 None:intergenic
AAGGTTCTGTCACCGACTCA+CGG 0.543196 6.2:+70153779 MS.gene54238:CDS
AATCGAGATTGATCTTTGGC+CGG 0.545496 6.2:-70153670 None:intergenic
GATTGTATAGGAGTAATTGA+TGG 0.547687 6.2:+70153625 MS.gene54238:CDS
TCAATATCACCCATGCTGAT+TGG 0.548167 6.2:-70153029 None:intergenic
AGGTTCTGTCACCGACTCAC+GGG 0.562802 6.2:+70153780 MS.gene54238:CDS
CAAGCTAGTGTTCCAGCTAG+TGG 0.563625 6.2:+70152439 MS.gene54238:CDS
GGTTTATCACCCAGGAGATG+TGG 0.563874 6.2:+70153134 MS.gene54238:CDS
CAGGAGCGGTTTCAGCACTC+AGG 0.566031 6.2:+70153353 MS.gene54238:CDS
GCCATAAATCCACATCTCCT+GGG 0.566505 6.2:-70153143 None:intergenic
AGCAGCTGCTATCTGCATCA+TGG 0.570810 6.2:-70152509 None:intergenic
AGCTTCTGGTGATGCCATAG+TGG 0.573165 6.2:+70152483 MS.gene54238:CDS
CAAGAATACTTAAATACAGA+AGG 0.573953 6.2:+70154152 MS.gene54238:CDS
AATAGAGATGAAAACCTCCC+GGG 0.577351 6.2:-70152674 None:intergenic
TGAAGAAATAAATTGAACAT+CGG 0.577543 6.2:-70154495 None:intergenic
GTGACAGAACCTTCCCAACC+AGG 0.582402 6.2:-70153769 None:intergenic
AAATGCAATTATGAAGAATG+AGG 0.583203 6.2:+70152546 MS.gene54238:CDS
CTTCCCGTGGTTTATCACCC+AGG 0.584887 6.2:+70153126 MS.gene54238:CDS
GCTAGTGGTGGTCGGAAGAG+GGG 0.585645 6.2:+70152454 MS.gene54238:CDS
ATGGCTTTCGATGATGAGGA+TGG 0.589950 6.2:+70152367 MS.gene54238:CDS
CAGCATGGGTGATATTGACA+TGG 0.591176 6.2:+70153034 MS.gene54238:CDS
TGAGAATCACCCTAATGCCC+GGG 0.591855 6.2:+70152657 MS.gene54238:CDS
CTGGTTATTCAGTAGTTTAG+GGG 0.592004 6.2:+70154433 MS.gene54238:CDS
CACCTCTAAACTCATAAGGT+TGG 0.594202 6.2:-70154205 None:intergenic
TTTATGGCAGAAGTGCTGAA+TGG 0.597101 6.2:+70153158 MS.gene54238:CDS
AAGCAAGTGCATCAGTGTGT+TGG 0.597279 6.2:+70152582 MS.gene54238:CDS
TGGTTATTCAGTAGTTTAGG+GGG 0.599818 6.2:+70154434 MS.gene54238:CDS
AATTTCCCACAAATTCCTCA+AGG 0.601774 6.2:+70153835 MS.gene54238:CDS
ACAGATACACCAATCAGCAT+GGG 0.605365 6.2:+70153020 MS.gene54238:CDS
TGCCTTTAACACCCGTGAGT+CGG 0.605648 6.2:-70153791 None:intergenic
TTAAGTATTCTTGGTCAACA+AGG 0.607070 6.2:-70154142 None:intergenic
TTGTCGTGAAATGTTGCGGA+TGG 0.607611 6.2:+70153193 MS.gene54238:CDS
TCACCTACCAAGAAATGCAA+AGG 0.607831 6.2:+70154232 MS.gene54238:CDS
GTGTTCCAGCTAGTGGTGGT+CGG 0.615184 6.2:+70152446 MS.gene54238:CDS
ATCTCCTGGGTGATAAACCA+CGG 0.624115 6.2:-70153130 None:intergenic
ACCAGAAGTATCACGTAACA+TGG 0.625814 6.2:-70153261 None:intergenic
GATGATGCGAACATGTTAGA+CGG 0.630185 6.2:+70152406 MS.gene54238:CDS
GGTGATGTTGTATCCTCAGG+AGG 0.631551 6.2:-70153446 None:intergenic
CTAACAAAACAGCCTTCCCG+TGG 0.634429 6.2:+70153113 MS.gene54238:CDS
GTTAATGGCTTTCGATGATG+AGG 0.645112 6.2:+70152363 None:intergenic
TCTCCTGGGTGATAAACCAC+GGG 0.646361 6.2:-70153129 None:intergenic
GCTAGTGTTCCAGCTAGTGG+TGG 0.652322 6.2:+70152442 MS.gene54238:CDS
CTGGGTGATAAACCACGGGA+AGG 0.661556 6.2:-70153125 None:intergenic
GGTTATTCAGTAGTTTAGGG+GGG 0.667813 6.2:+70154435 MS.gene54238:CDS
GGATGAGATGGAACTCGTTG+CGG 0.671380 6.2:+70153061 MS.gene54238:CDS
GTAATAGAGTGATTCAGGAG+CGG 0.681046 6.2:+70153339 MS.gene54238:CDS
TCTTGAATAAATGGGACGAG+TGG 0.681165 6.2:+70154579 MS.gene54238:CDS
CATGTATTTCAGAAGCTGTG+TGG 0.686088 6.2:+70153221 MS.gene54238:CDS
GCCGTGAAGAAAGAAATGAC+TGG 0.693527 6.2:+70154414 MS.gene54238:CDS
TGAGTCTGAAAAGAATACTG+AGG 0.711551 6.2:-70154347 None:intergenic
GAATCACCCTAATGCCCGGG+AGG 0.714237 6.2:+70152660 MS.gene54238:CDS
AGTCATTTCTTTCTTCACGG+CGG 0.739854 6.2:-70154412 None:intergenic
AGTGTGTTGGATGAGATGCA+AGG 0.751749 6.2:+70152595 MS.gene54238:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAATATAAATTGATTAACA+TGG - chr6.2:70152883-70152902 None:intergenic 10.0%
!! AAATATAAATTGATTAACAT+GGG - chr6.2:70152882-70152901 None:intergenic 10.0%
!! AACTATTAATTTATTTCCTT+TGG + chr6.2:70154096-70154115 MS.gene54238:intron 15.0%
!! TCAATACATTATTAAAATGT+CGG - chr6.2:70153391-70153410 None:intergenic 15.0%
!! CTTAAAAGATCATACTAATA+TGG - chr6.2:70153539-70153558 None:intergenic 20.0%
!! GAAAAATGAATATAAACTGA+AGG - chr6.2:70153750-70153769 None:intergenic 20.0%
!! TGAAGAAATAAATTGAACAT+CGG - chr6.2:70154498-70154517 None:intergenic 20.0%
!!! TAGATTTTATCCATATTTCA+AGG + chr6.2:70153487-70153506 MS.gene54238:CDS 20.0%
! AAATGCAATTATGAAGAATG+AGG + chr6.2:70152546-70152565 MS.gene54238:CDS 25.0%
! ACAATCCTGAAATAATAGTA+GGG - chr6.2:70153611-70153630 None:intergenic 25.0%
! ATCTGAGAAATACTATCTTA+AGG + chr6.2:70154279-70154298 MS.gene54238:CDS 25.0%
! CAAGAATACTTAAATACAGA+AGG + chr6.2:70154152-70154171 MS.gene54238:CDS 25.0%
! CTATTATTTCAGGATTGTAT+AGG + chr6.2:70153613-70153632 MS.gene54238:intron 25.0%
! CTTCTGTATTTAAGTATTCT+TGG - chr6.2:70154154-70154173 None:intergenic 25.0%
! GAAGAAATAAATTGAACATC+GGG - chr6.2:70154497-70154516 None:intergenic 25.0%
! TACAATCCTGAAATAATAGT+AGG - chr6.2:70153612-70153631 None:intergenic 25.0%
! TTCGTAACCAAAAACAAAAA+AGG - chr6.2:70152775-70152794 None:intergenic 25.0%
!! ATTTTCTCAAACGATTCAAA+TGG - chr6.2:70152749-70152768 None:intergenic 25.0%
!!! AAATCGTCCTTTTTTGTTTT+TGG + chr6.2:70152765-70152784 MS.gene54238:intron 25.0%
!!! AGATTTGTTTTATGCATGAT+TGG + chr6.2:70152939-70152958 MS.gene54238:intron 25.0%
!!! CAGTTTATATTCATTTTTCC+TGG + chr6.2:70153751-70153770 MS.gene54238:CDS 25.0%
!!! TATATTCATTTTTCCTGGTT+GGG + chr6.2:70153756-70153775 MS.gene54238:CDS 25.0%
!!! TTATATTCATTTTTCCTGGT+TGG + chr6.2:70153755-70153774 MS.gene54238:CDS 25.0%
!!! TTTTTGTTTTTGGTTACGAA+TGG + chr6.2:70152775-70152794 MS.gene54238:intron 25.0%
ACTGGTTATTCAGTAGTTTA+GGG + chr6.2:70154432-70154451 MS.gene54238:CDS 30.0%
ATCATTCAGACCTTGAAATA+TGG - chr6.2:70153500-70153519 None:intergenic 30.0%
CAGTCTAGTTAACTATACAA+AGG - chr6.2:70152808-70152827 None:intergenic 30.0%
GATTGTATAGGAGTAATTGA+TGG + chr6.2:70153625-70153644 MS.gene54238:CDS 30.0%
TATAGTTAACTAGACTGCAA+AGG + chr6.2:70152811-70152830 MS.gene54238:intron 30.0%
TATTTCTTCAATACCAGAAC+AGG + chr6.2:70154508-70154527 MS.gene54238:CDS 30.0%
TGAAATAATAGTAGGGAGAT+GGG - chr6.2:70153604-70153623 None:intergenic 30.0%
TGACGACTTCTTGAATAAAT+GGG + chr6.2:70154571-70154590 MS.gene54238:CDS 30.0%
TTAAGTATTCTTGGTCAACA+AGG - chr6.2:70154145-70154164 None:intergenic 30.0%
TTCCTATGAAACAAATCCAA+AGG - chr6.2:70154115-70154134 None:intergenic 30.0%
TTGACGACTTCTTGAATAAA+TGG + chr6.2:70154570-70154589 MS.gene54238:CDS 30.0%
! CAAATCTAGTTTGAAAACAG+AGG - chr6.2:70152926-70152945 None:intergenic 30.0%
! GTTTTATGCATGATTGGAAT+TGG + chr6.2:70152945-70152964 MS.gene54238:intron 30.0%
! TTCCTTTGGATTTGTTTCAT+AGG + chr6.2:70154110-70154129 MS.gene54238:intron 30.0%
!! GCGATATTTTTAAACGTCAT+TGG + chr6.2:70153305-70153324 MS.gene54238:CDS 30.0%
!!! AAGGGTTTACTTTTTTGCTT+TGG + chr6.2:70152627-70152646 MS.gene54238:CDS 30.0%
AACAACTCCTTTGCATTTCT+TGG - chr6.2:70154242-70154261 None:intergenic 35.0%
AATTTCCCACAAATTCCTCA+AGG + chr6.2:70153835-70153854 MS.gene54238:CDS 35.0%
ACCAGTCATTTCTTTCTTCA+CGG - chr6.2:70154418-70154437 None:intergenic 35.0%
AGAGTGAAAAAAGAATGCCA+TGG + chr6.2:70152698-70152717 MS.gene54238:intron 35.0%
AGCACATAGAGTGATAAACA+GGG - chr6.2:70153566-70153585 None:intergenic 35.0%
ATAAATGCTAACGAACCTTG+AGG - chr6.2:70153853-70153872 None:intergenic 35.0%
ATTTGTGGGAAATTCTGATC+TGG - chr6.2:70153829-70153848 None:intergenic 35.0%
CAAAGGAGTTGTTCAATCAT+AGG + chr6.2:70154249-70154268 MS.gene54238:CDS 35.0%
CATCTCCCTACTATTATTTC+AGG + chr6.2:70153603-70153622 MS.gene54238:intron 35.0%
CATGTGAGTTTGTGTTTCAT+AGG + chr6.2:70154050-70154069 MS.gene54238:intron 35.0%
CTATGAAACACAAACTCACA+TGG - chr6.2:70154052-70154071 None:intergenic 35.0%
CTGAAATAATAGTAGGGAGA+TGG - chr6.2:70153605-70153624 None:intergenic 35.0%
CTGGTTATTCAGTAGTTTAG+GGG + chr6.2:70154433-70154452 MS.gene54238:CDS 35.0%
TAATAGAGATGAAAACCTCC+CGG - chr6.2:70152678-70152697 None:intergenic 35.0%
TACCAACCTTATGAGTTTAG+AGG + chr6.2:70154203-70154222 MS.gene54238:CDS 35.0%
TACTACACAGATAACTGACA+AGG - chr6.2:70153903-70153922 None:intergenic 35.0%
TAGCACATAGAGTGATAAAC+AGG - chr6.2:70153567-70153586 None:intergenic 35.0%
TCACTCTATTACGTTCACTA+TGG - chr6.2:70153331-70153350 None:intergenic 35.0%
TCTCGATTTCGCAATAAGAA+AGG + chr6.2:70153685-70153704 MS.gene54238:CDS 35.0%
TGAACGTAATAGAGTGATTC+AGG + chr6.2:70153334-70153353 MS.gene54238:CDS 35.0%
TGAGTCTGAAAAGAATACTG+AGG - chr6.2:70154350-70154369 None:intergenic 35.0%
TGGTTATTCAGTAGTTTAGG+GGG + chr6.2:70154434-70154453 MS.gene54238:CDS 35.0%
TTAGCACCTCTAAACTCATA+AGG - chr6.2:70154212-70154231 None:intergenic 35.0%
TTCTCAAACGATTCAAATGG+AGG - chr6.2:70152746-70152765 None:intergenic 35.0%
TTTGTGGGAAATTCTGATCT+GGG - chr6.2:70153828-70153847 None:intergenic 35.0%
! ACTTTTGTCGTGAAATGTTG+CGG + chr6.2:70153189-70153208 MS.gene54238:CDS 35.0%
! AGTATTCTTTTCAGACTCAG+CGG + chr6.2:70154351-70154370 MS.gene54238:CDS 35.0%
! GACTGGTTATTCAGTAGTTT+AGG + chr6.2:70154431-70154450 MS.gene54238:CDS 35.0%
! GATTTCTTGCTCCTTTTCAA+GGG + chr6.2:70154174-70154193 MS.gene54238:CDS 35.0%
! GTTTGAAAACAGAGGTATGT+TGG - chr6.2:70152918-70152937 None:intergenic 35.0%
!! ATTTCTTGCTCCTTTTCAAG+GGG + chr6.2:70154175-70154194 MS.gene54238:CDS 35.0%
AAAAAGAATGCCATGGTTGC+AGG + chr6.2:70152705-70152724 MS.gene54238:intron 40.0%
AAAAGAATGCCATGGTTGCA+GGG + chr6.2:70152706-70152725 MS.gene54238:intron 40.0%
AACGAACCTTGAGGAATTTG+TGG - chr6.2:70153844-70153863 None:intergenic 40.0%
AATAGAGATGAAAACCTCCC+GGG - chr6.2:70152677-70152696 None:intergenic 40.0%
AATCGAGATTGATCTTTGGC+CGG - chr6.2:70153673-70153692 None:intergenic 40.0%
AATGAGAATGCAACCTGTTC+TGG - chr6.2:70154524-70154543 None:intergenic 40.0%
AATTCTGATCTGGGTCATCA+AGG - chr6.2:70153819-70153838 None:intergenic 40.0%
ACAGATACACCAATCAGCAT+GGG + chr6.2:70153020-70153039 MS.gene54238:CDS 40.0%
ACGAACCTTGAGGAATTTGT+GGG - chr6.2:70153843-70153862 None:intergenic 40.0%
ACTCCTTTGCATTTCTTGGT+AGG - chr6.2:70154238-70154257 None:intergenic 40.0%
AGATGCAAGGTCTTGATGAA+AGG + chr6.2:70152608-70152627 MS.gene54238:CDS 40.0%
AGCAGCTGCTTCAAAAATGA+GGG + chr6.2:70152522-70152541 MS.gene54238:CDS 40.0%
AGTCATTTCTTTCTTCACGG+CGG - chr6.2:70154415-70154434 None:intergenic 40.0%
CACCTCTAAACTCATAAGGT+TGG - chr6.2:70154208-70154227 None:intergenic 40.0%
CATGTATTTCAGAAGCTGTG+TGG + chr6.2:70153221-70153240 MS.gene54238:CDS 40.0%
CTAGCACTGTTGAGAATTTC+TGG - chr6.2:70153470-70153489 None:intergenic 40.0%
GAGGAGCAAGTTTCATGATT+GGG - chr6.2:70154331-70154350 None:intergenic 40.0%
GATGATGCGAACATGTTAGA+CGG + chr6.2:70152406-70152425 MS.gene54238:CDS 40.0%
GATGCAAGGTCTTGATGAAA+GGG + chr6.2:70152609-70152628 MS.gene54238:CDS 40.0%
GCGAAATCGAGATTGATCTT+TGG - chr6.2:70153677-70153696 None:intergenic 40.0%
GGGTGATATTGACATGGAAT+TGG + chr6.2:70153040-70153059 MS.gene54238:CDS 40.0%
GGTTATTCAGTAGTTTAGGG+GGG + chr6.2:70154435-70154454 MS.gene54238:CDS 40.0%
GTAATAGAGTGATTCAGGAG+CGG + chr6.2:70153339-70153358 MS.gene54238:CDS 40.0%
GTACAAACACGTTGGATCAA+AGG + chr6.2:70153920-70153939 MS.gene54238:intron 40.0%
TACAGATACACCAATCAGCA+TGG + chr6.2:70153019-70153038 MS.gene54238:CDS 40.0%
TAGCAGCTGCTTCAAAAATG+AGG + chr6.2:70152521-70152540 MS.gene54238:CDS 40.0%
TATCACGTAACATGGCTCTT+TGG - chr6.2:70153256-70153275 None:intergenic 40.0%
TCAATATCACCCATGCTGAT+TGG - chr6.2:70153032-70153051 None:intergenic 40.0%
TCACCTACCAAGAAATGCAA+AGG + chr6.2:70154232-70154251 MS.gene54238:CDS 40.0%
TCTGTGTAGTACAAACACGT+TGG + chr6.2:70153912-70153931 MS.gene54238:intron 40.0%
TCTTGAATAAATGGGACGAG+TGG + chr6.2:70154579-70154598 MS.gene54238:CDS 40.0%
TGACATGGAATTGGATGAGA+TGG + chr6.2:70153049-70153068 MS.gene54238:CDS 40.0%
TGAGGAGCAAGTTTCATGAT+TGG - chr6.2:70154332-70154351 None:intergenic 40.0%
! CAAAATTTTCCCTGCAACCA+TGG - chr6.2:70152718-70152737 None:intergenic 40.0%
! GGATTTCTTGCTCCTTTTCA+AGG + chr6.2:70154173-70154192 MS.gene54238:CDS 40.0%
! GTATTCTTTTCAGACTCAGC+GGG + chr6.2:70154352-70154371 MS.gene54238:CDS 40.0%
! TGAATTTTTGCAACCTCCTG+AGG + chr6.2:70153433-70153452 MS.gene54238:CDS 40.0%
!! ACCAGAAGTATCACGTAACA+TGG - chr6.2:70153264-70153283 None:intergenic 40.0%
!! TTCATTTTTCCTGGTTGGGA+AGG + chr6.2:70153760-70153779 MS.gene54238:CDS 40.0%
!! TTTATGGCAGAAGTGCTGAA+TGG + chr6.2:70153158-70153177 MS.gene54238:CDS 40.0%
!!! CTGCAAGCACATTTTGAGAT+AGG - chr6.2:70153714-70153733 None:intergenic 40.0%
AAGCAAGTGCATCAGTGTGT+TGG + chr6.2:70152582-70152601 MS.gene54238:CDS 45.0%
ACCCAGGAGATGTGGATTTA+TGG + chr6.2:70153142-70153161 MS.gene54238:CDS 45.0%
AGTGTGTTGGATGAGATGCA+AGG + chr6.2:70152595-70152614 MS.gene54238:CDS 45.0%
ATCTCCTGGGTGATAAACCA+CGG - chr6.2:70153133-70153152 None:intergenic 45.0%
ATGGCTTTCGATGATGAGGA+TGG + chr6.2:70152367-70152386 MS.gene54238:CDS 45.0%
CAGCATGGGTGATATTGACA+TGG + chr6.2:70153034-70153053 MS.gene54238:CDS 45.0%
GATGATGAGGATGGTTCTTC+AGG + chr6.2:70152376-70152395 MS.gene54238:CDS 45.0%
GCAAATTCCTGCACATGTTC+CGG + chr6.2:70153651-70153670 MS.gene54238:CDS 45.0%
GCCATAAATCCACATCTCCT+GGG - chr6.2:70153146-70153165 None:intergenic 45.0%
GCCATGTTACGTGATACTTC+TGG + chr6.2:70153260-70153279 MS.gene54238:CDS 45.0%
GCCGTGAAGAAAGAAATGAC+TGG + chr6.2:70154414-70154433 MS.gene54238:CDS 45.0%
TGCCATAAATCCACATCTCC+TGG - chr6.2:70153147-70153166 None:intergenic 45.0%
TTGAGAATCACCCTAATGCC+CGG + chr6.2:70152656-70152675 MS.gene54238:CDS 45.0%
TTGTCGTGAAATGTTGCGGA+TGG + chr6.2:70153193-70153212 MS.gene54238:CDS 45.0%
! TCTGGTGATGTTGTATCCTC+AGG - chr6.2:70153452-70153471 None:intergenic 45.0%
! TGGCATCACCAGAAGCTTTT+CGG - chr6.2:70152480-70152499 None:intergenic 45.0%
!! TTGCTCCTTTTCAAGGGGTT+CGG + chr6.2:70154180-70154199 MS.gene54238:CDS 45.0%
AGCAGCTGCTATCTGCATCA+TGG - chr6.2:70152512-70152531 None:intergenic 50.0%
ATGAAAACCTCCCGGGCATT+AGG - chr6.2:70152670-70152689 None:intergenic 50.0%
CAAGCTAGTGTTCCAGCTAG+TGG + chr6.2:70152439-70152458 MS.gene54238:CDS 50.0%
CACGTAACATGGCTCTTTGG+CGG - chr6.2:70153253-70153272 None:intergenic 50.0%
CTAACAAAACAGCCTTCCCG+TGG + chr6.2:70153113-70153132 MS.gene54238:CDS 50.0%
CTGCATCATGGCATCCACTA+TGG - chr6.2:70152500-70152519 None:intergenic 50.0%
GGATGAGATGGAACTCGTTG+CGG + chr6.2:70153061-70153080 MS.gene54238:CDS 50.0%
GGTGATGTTGTATCCTCAGG+AGG - chr6.2:70153449-70153468 None:intergenic 50.0%
GGTTTATCACCCAGGAGATG+TGG + chr6.2:70153134-70153153 MS.gene54238:CDS 50.0%
TAGTTTAGGGGGGACATTCG+TGG + chr6.2:70154445-70154464 MS.gene54238:CDS 50.0%
TCTCCTGGGTGATAAACCAC+GGG - chr6.2:70153132-70153151 None:intergenic 50.0%
TGAAAACCTCCCGGGCATTA+GGG - chr6.2:70152669-70152688 None:intergenic 50.0%
TGAACATCGGGAAGTTCGTC+AGG - chr6.2:70154485-70154504 None:intergenic 50.0%
TGAGAATCACCCTAATGCCC+GGG + chr6.2:70152657-70152676 MS.gene54238:CDS 50.0%
TGCCTTTAACACCCGTGAGT+CGG - chr6.2:70153794-70153813 None:intergenic 50.0%
! AGCTTCTGGTGATGCCATAG+TGG + chr6.2:70152483-70152502 MS.gene54238:CDS 50.0%
! TGGTACCGAACCCCTTGAAA+AGG - chr6.2:70154188-70154207 None:intergenic 50.0%
!! AAGGTTCTGTCACCGACTCA+CGG + chr6.2:70153779-70153798 MS.gene54238:CDS 50.0%
AAGAGGGGCCGAAAAGCTTC+TGG + chr6.2:70152469-70152488 MS.gene54238:CDS 55.0%
AGCTAGTGGTGGTCGGAAGA+GGG + chr6.2:70152453-70152472 MS.gene54238:CDS 55.0%
CTGGGTGATAAACCACGGGA+AGG - chr6.2:70153128-70153147 None:intergenic 55.0%
CTTCCCGTGGTTTATCACCC+AGG + chr6.2:70153126-70153145 MS.gene54238:CDS 55.0%
GAGGATGGTTCTTCAGGCTC+AGG + chr6.2:70152382-70152401 MS.gene54238:CDS 55.0%
GCTAGTGTTCCAGCTAGTGG+TGG + chr6.2:70152442-70152461 MS.gene54238:CDS 55.0%
GTGACAGAACCTTCCCAACC+AGG - chr6.2:70153772-70153791 None:intergenic 55.0%
GTGTTCCAGCTAGTGGTGGT+CGG + chr6.2:70152446-70152465 MS.gene54238:CDS 55.0%
TCTTTGGCCGGAACATGTGC+AGG - chr6.2:70153661-70153680 None:intergenic 55.0%
! CGTTGGATCAAAGGCGTGTC+TGG + chr6.2:70153929-70153948 MS.gene54238:intron 55.0%
!! AGGTTCTGTCACCGACTCAC+GGG + chr6.2:70153780-70153799 MS.gene54238:CDS 55.0%
!! CACCGACTCACGGGTGTTAA+AGG + chr6.2:70153789-70153808 MS.gene54238:CDS 55.0%
CAGCTAGTGGTGGTCGGAAG+AGG + chr6.2:70152452-70152471 MS.gene54238:CDS 60.0%
CAGGAGCGGTTTCAGCACTC+AGG + chr6.2:70153353-70153372 MS.gene54238:CDS 60.0%
CTCTTCCGACCACCACTAGC+TGG - chr6.2:70152454-70152473 None:intergenic 60.0%
GAATCACCCTAATGCCCGGG+AGG + chr6.2:70152660-70152679 MS.gene54238:CDS 60.0%
GCTAGTGGTGGTCGGAAGAG+GGG + chr6.2:70152454-70152473 MS.gene54238:CDS 60.0%
!! CGTGTCAGTGTCGACCGTGT+CGG - chr6.2:70153958-70153977 None:intergenic 60.0%
GAACTCGTTGCGGCTGCTGC+TGG + chr6.2:70153071-70153090 MS.gene54238:CDS 65.0%
! GGCGTGTCTGGCTTCCGACA+CGG + chr6.2:70153941-70153960 MS.gene54238:intron 65.0%


Chromosome Type Strat End Strand Name
chr6.2 gene 70152367 70154604 70152367 ID=MS.gene54238
chr6.2 mRNA 70152367 70154604 70152367 ID=MS.gene54238.t1;Parent=MS.gene54238
chr6.2 exon 70152367 70152681 70152367 ID=MS.gene54238.t1.exon1;Parent=MS.gene54238.t1
chr6.2 CDS 70152367 70152681 70152367 ID=cds.MS.gene54238.t1;Parent=MS.gene54238.t1
chr6.2 exon 70152987 70153508 70152987 ID=MS.gene54238.t1.exon2;Parent=MS.gene54238.t1
chr6.2 CDS 70152987 70153508 70152987 ID=cds.MS.gene54238.t1;Parent=MS.gene54238.t1
chr6.2 exon 70153625 70153856 70153625 ID=MS.gene54238.t1.exon3;Parent=MS.gene54238.t1
chr6.2 CDS 70153625 70153856 70153625 ID=cds.MS.gene54238.t1;Parent=MS.gene54238.t1
chr6.2 exon 70154132 70154604 70154132 ID=MS.gene54238.t1.exon4;Parent=MS.gene54238.t1
chr6.2 CDS 70154132 70154604 70154132 ID=cds.MS.gene54238.t1;Parent=MS.gene54238.t1
Gene Sequence

>MS.gene54238

ATGGCTTTCGATGATGAGGATGGTTCTTCAGGCTCAGGAGATGATGCGAACATGTTAGACGGACACAAGCGTCAAGCTAGTGTTCCAGCTAGTGGTGGTCGGAAGAGGGGCCGAAAAGCTTCTGGTGATGCCATAGTGGATGCCATGATGCAGATAGCAGCTGCTTCAAAAATGAGGGCAAATGCAATTATGAAGAATGAGGACAAATTTTCAATAAGCAAGTGCATCAGTGTGTTGGATGAGATGCAAGGTCTTGATGAAAGGGTTTACTTTTTTGCTTTGGATTTGTTTGAGAATCACCCTAATGCCCGGGAGGTTTTCATCTCTATTAAGAGTGAAAAAAGAATGCCATGGTTGCAGGGAAAATTTTGTGTTTCCTCCATTTGAATCGTTTGAGAAAATCGTCCTTTTTTGTTTTTGGTTACGAATGGTCTCATACCTTTGTATAGTTAACTAGACTGCAAAGGAATGATGTTAGTTACTATATAACTAATTCGATTTTGTGCTCAAAGCCCATGTTAATCAATTTATATTTTGAATTTCTAATGCCAACATACCTCTGTTTTCAAACTAGATTTGTTTTATGCATGATTGGAATTGGAATGCTTTATATCAACTAGATATATCAGAAAGAAGTTTTGAAGTTTATTTTTACAGATACACCAATCAGCATGGGTGATATTGACATGGAATTGGATGAGATGGAACTCGTTGCGGCTGCTGCTGGATACTATTATTATAGCTCTCTAACAAAACAGCCTTCCCGTGGTTTATCACCCAGGAGATGTGGATTTATGGCAGAAGTGCTGAATGGACACGATGACTTTTGTCGTGAAATGTTGCGGATGGACAGACATGTATTTCAGAAGCTGTGTGGCATTTTCCGCCAAAGAGCCATGTTACGTGATACTTCTGGTGTAATGATAGAAGAGCAGTTAGCGATATTTTTAAACGTCATTGGCCATAGTGAACGTAATAGAGTGATTCAGGAGCGGTTTCAGCACTCAGGTGAAACTATTAGCCGACATTTTAATAATGTATTGAAAGCTATTAAATCACTATCGCGTGAATTTTTGCAACCTCCTGAGGATACAACATCACCAGAAATTCTCAACAGTGCTAGATTTTATCCATATTTCAAGGTCTGAATGATCTTTTAGCTACTTCTTCCATATTAGTATGATCTTTTAAGTTTTCCCTGTTTATCACTCTATGTGCTACTTTACTGACTTTTCCCATCTCCCTACTATTATTTCAGGATTGTATAGGAGTAATTGATGGTATGCAAATTCCTGCACATGTTCCGGCCAAAGATCAATCTCGATTTCGCAATAAGAAAGGCATCCTATCTCAAAATGTGCTTGCAGCTTGCACATTTGACCTTCAGTTTATATTCATTTTTCCTGGTTGGGAAGGTTCTGTCACCGACTCACGGGTGTTAAAGGCAGTCCTTGATGACCCAGATCAGAATTTCCCACAAATTCCTCAAGGTTCGTTAGCATTTATGACTGTGATCTTGATTTCATTATCTGTCCTTGTCAGTTATCTGTGTAGTACAAACACGTTGGATCAAAGGCGTGTCTGGCTTCCGACACGGTCGACACTGACACGTGTATTACATTCAATTAATTAATTTTCTCAAATCATTATCAATATTCACTTGTCAATGTCGTGTTCAGTGTCCATGTGAGTTTGTGTTTCATAGGTTGTTACGCATTGCATTAAAAATAACTATTAATTTATTTCCTTTGGATTTGTTTCATAGGAAAGTATTACCTTGTTGACCAAGAATACTTAAATACAGAAGGATTTCTTGCTCCTTTTCAAGGGGTTCGGTACCAACCTTATGAGTTTAGAGGTGCTAATCACCTACCAAGAAATGCAAAGGAGTTGTTCAATCATAGGCATTGCTATCTGAGAAATACTATCTTAAGGTCATTTAATGTGTTGAAAACTAGATTCCCAATCATGAAACTTGCTCCTCAGTATTCTTTTCAGACTCAGCGGGATATAGTCATAGCTGCATGTGTTTTGCATAATTTCATCCGCCGTGAAGAAAGAAATGACTGGTTATTCAGTAGTTTAGGGGGGACATTCGTGGATGAACAATCAGATCCTGACGAACTTCCCGATGTTCAATTTATTTCTTCAATACCAGAACAGGTTGCATTCTCATTACGTGAATCAGTTTCTGCATCTATGTTTGACGACTTCTTGAATAAATGGGACGAGTGGTGA

Protein sequence

>MS.gene54238.t1

MAFDDEDGSSGSGDDANMLDGHKRQASVPASGGRKRGRKASGDAIVDAMMQIAAASKMRANAIMKNEDKFSISKCISVLDEMQGLDERVYFFALDLFENHPNAREIYQKEVLKFIFTDTPISMGDIDMELDEMELVAAAAGYYYYSSLTKQPSRGLSPRRCGFMAEVLNGHDDFCREMLRMDRHVFQKLCGIFRQRAMLRDTSGVMIEEQLAIFLNVIGHSERNRVIQERFQHSGETISRHFNNVLKAIKSLSREFLQPPEDTTSPEILNSARFYPYFKDCIGVIDGMQIPAHVPAKDQSRFRNKKGILSQNVLAACTFDLQFIFIFPGWEGSVTDSRVLKAVLDDPDQNFPQIPQGKYYLVDQEYLNTEGFLAPFQGVRYQPYEFRGANHLPRNAKELFNHRHCYLRNTILRSFNVLKTRFPIMKLAPQYSFQTQRDIVIAACVLHNFIRREERNDWLFSSLGGTFVDEQSDPDELPDVQFISSIPEQVAFSLRESVSASMFDDFLNKWDEW