AlfalfaGEDB | MS.gene58671

M. sativa cultivar XinJiangDaYe / MS.gene58671

KEGG: -
GO: GO:0003674 GO:0003824 GO:0005488 GO:0008144 GO:0019842 GO:0030151 GO:0030170 GO:0036094 GO:0043167 GO:0043168 GO:0043169 GO:0046872 GO:0046914 GO:0048037 GO:0050662 GO:0070279 GO:0097159 GO:1901363
PFAM: PF03473.20 PF03476.19

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene58671.t1	XP_003594859.2	96.2	319	12	0	1	319	1	319	1.90E-182	648.3

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene58671.t1	Q1LZH1	31.0	300	171	9	19	306	57	332	5.6e-34	146.4

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene58671.t1	G7INC7	96.2	319	12	0	1	319	1	319	1.4e-182	648.3

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049149	MS.gene58671	0.835867	1.31E-56	-1.69E-46
MS.gene049153	MS.gene58671	0.810406	1.17E-50	-1.69E-46
MS.gene049910	MS.gene58671	0.808999	2.35E-50	-1.69E-46
MS.gene049993	MS.gene58671	0.856954	2.27E-62	-1.69E-46
MS.gene050060	MS.gene58671	0.842416	2.62E-58	-1.69E-46
MS.gene050133	MS.gene58671	-0.800982	1.12E-48	-1.69E-46
MS.gene050406	MS.gene58671	0.823277	1.51E-53	-1.69E-46
MS.gene050426	MS.gene58671	-0.861013	1.38E-63	-1.69E-46
MS.gene050464	MS.gene58671	0.823668	1.22E-53	-1.69E-46
MS.gene050529	MS.gene58671	0.816752	4.70E-52	-1.69E-46

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PPI:

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene58671.t1	MTR_2g035470	96.238	319	12	0	1	319	1	319	0.0	641
MS.gene58671.t1	MTR_2g035480	81.875	320	52	2	1	319	1	315	0.0	547
MS.gene58671.t1	MTR_2g035460	83.007	306	51	1	15	319	19	324	0.0	537
MS.gene58671.t1	MTR_2g035460	82.528	269	46	1	52	319	1	269	1.05e-167	467
MS.gene58671.t1	MTR_2g035470	95.133	226	11	0	94	319	1	226	1.35e-162	452
MS.gene58671.t1	MTR_2g035480	83.258	221	36	1	100	319	1	221	6.80e-136	384
MS.gene58671.t1	MTR_2g035480	76.136	176	41	1	145	319	18	193	5.85e-97	285
MS.gene58671.t1	MTR_4g030930	27.599	279	161	9	24	280	455	714	1.40e-22	98.6

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene58671.t1	AT1G30910	58.609	302	122	2	17	318	19	317	5.00e-134	384
MS.gene58671.t1	AT5G44720	55.921	304	131	3	18	319	6	308	1.27e-126	364
MS.gene58671.t1	AT5G44720	57.522	226	95	1	18	243	6	230	4.46e-96	284
MS.gene58671.t1	AT1G16540	26.923	286	170	8	15	280	527	793	6.26e-25	105
MS.gene58671.t1	AT1G16540	25.649	308	185	6	15	280	527	832	1.00e-23	102

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Find 80 sgRNAs with CRISPR-Local

Find 233 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACAGGATCTCCCAATTTA+AGG	0.238470	2.3:+53560162	None:intergenic
AAACTGGTCCGCTTCAATAC+TGG	0.403839	2.3:-53561260	MS.gene58671:intron
AACCGTATTCTGAAGACCTA+TGG	0.503411	2.3:-53560689	MS.gene58671:CDS
AAGGAGCCGAAGCATCGCAG+TGG	0.695660	2.3:-53561310	MS.gene58671:CDS
AATACCCATAAAGGAATCAG+TGG	0.615368	2.3:+53563292	None:intergenic
AATATGTAAAATACCCATAA+AGG	0.377071	2.3:+53563283	None:intergenic
AATCAAGAGACAGCAAAAGT+TGG	0.492806	2.3:-53560405	MS.gene58671:CDS
ACACCTGAAGCTAAAGTTAC+AGG	0.385335	2.3:-53563614	MS.gene58671:CDS
ACCAAAGCTTGCTTTGGTTG+AGG	0.529657	2.3:-53563357	MS.gene58671:CDS
ACCTACCACTGATTCCTTTA+TGG	0.111647	2.3:-53563297	MS.gene58671:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAGGCTAACTTATGTCTTT+AGG	+	chr2.3:53560984-53561003	None:intergenic	30.0%
AAATCAAAACCATGACAACA+TGG	+	chr2.3:53560791-53560810	None:intergenic	30.0%
AAGGCTAACTTATGTCTTTA+GGG	+	chr2.3:53560983-53561002	None:intergenic	30.0%
AATCAAAACCATGACAACAT+GGG	+	chr2.3:53560790-53560809	None:intergenic	30.0%
AATTAATGCCTTTCAAGATC+TGG	+	chr2.3:53561026-53561045	None:intergenic	30.0%
ACATTAAATGAGATAAGGTC+CGG	-	chr2.3:53560579-53560598	MS.gene58671:intron	30.0%
ACATTATTTGAGAGTTATCG+TGG	+	chr2.3:53562697-53562716	None:intergenic	30.0%
ACTTATCACTGAAGAGTTTA+TGG	+	chr2.3:53562100-53562119	None:intergenic	30.0%
AGACCAGATTCTTAAAAGTT+TGG	+	chr2.3:53560656-53560675	None:intergenic	30.0%
AGTATATCCTTTCAAAGTAG+TGG	-	chr2.3:53561731-53561750	MS.gene58671:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr2.3	gene	53560118	53563675	53560118	ID=MS.gene58671
chr2.3	mRNA	53560118	53563675	53560118	ID=MS.gene58671.t1;Parent=MS.gene58671
chr2.3	exon	53563546	53563675	53563546	ID=MS.gene58671.t1.exon1;Parent=MS.gene58671.t1
chr2.3	CDS	53563546	53563675	53563546	ID=cds.MS.gene58671.t1;Parent=MS.gene58671.t1
chr2.3	exon	53563297	53563446	53563297	ID=MS.gene58671.t1.exon2;Parent=MS.gene58671.t1
chr2.3	CDS	53563297	53563446	53563297	ID=cds.MS.gene58671.t1;Parent=MS.gene58671.t1
chr2.3	exon	53561261	53561437	53561261	ID=MS.gene58671.t1.exon3;Parent=MS.gene58671.t1
chr2.3	CDS	53561261	53561437	53561261	ID=cds.MS.gene58671.t1;Parent=MS.gene58671.t1
chr2.3	exon	53560973	53561064	53560973	ID=MS.gene58671.t1.exon4;Parent=MS.gene58671.t1
chr2.3	CDS	53560973	53561064	53560973	ID=cds.MS.gene58671.t1;Parent=MS.gene58671.t1
chr2.3	exon	53560826	53560890	53560826	ID=MS.gene58671.t1.exon5;Parent=MS.gene58671.t1
chr2.3	CDS	53560826	53560890	53560826	ID=cds.MS.gene58671.t1;Parent=MS.gene58671.t1
chr2.3	exon	53560629	53560731	53560629	ID=MS.gene58671.t1.exon6;Parent=MS.gene58671.t1
chr2.3	CDS	53560629	53560731	53560629	ID=cds.MS.gene58671.t1;Parent=MS.gene58671.t1
chr2.3	exon	53560329	53560439	53560329	ID=MS.gene58671.t1.exon7;Parent=MS.gene58671.t1
chr2.3	CDS	53560329	53560439	53560329	ID=cds.MS.gene58671.t1;Parent=MS.gene58671.t1
chr2.3	exon	53560118	53560249	53560118	ID=MS.gene58671.t1.exon8;Parent=MS.gene58671.t1
chr2.3	CDS	53560118	53560249	53560118	ID=cds.MS.gene58671.t1;Parent=MS.gene58671.t1

Gene Sequence

>MS.gene58671

ATGAGTGTTGCAGCTTCAAAATCTGTAACAGAATCAGCAACACCTGAAGCTAAAGTTACAGGCATTTTCGTATATCCTGTTAAGTCATGCCGTGGAATTTCACTTTCTCAAGCTCCACTCACTCCTTCAGGTATCATATTCTTTTTTCTTTTACTTTTTTATTTTTTTGAAATTTAACTTAAATTTGATTGAAACTTTTTTTTTTCTTTTCAATTTATTTATTTGATAGGATTTAGGTGGGATAGACAATGGATGGTTGTGAATTCAAAAGGGAGAGCATGTACTCAAAGAGTTGAACCAAAGCTTGCTTTGGTTGAGGTTGAATTCCCACCTGAGGCTTTTGATGAACACTGGGAACCTACCACTGATTCCTTTATGGGTATTTTACATATTTATGTTATTCATTGAAACACATGTTTCTTGTTTTACTTGAATAAATAATGGTATGTGTTAAGAGTCTCACATTAAATGAGATAAGGTCCGGACATAAGTTTTTAAGGGGGAGCTGGTTTTGTTGGTTTGAGTTAGACCAGACCCAAACTTTTAAGAATCTGGTCTGAGTGGTAAGCAACGGGTCTCTTAAGCATGTGGTCATGAGTTTGATTTCTGGTTCATGCATTTACAATTTCACTTTTTGATAGAGTAGTAGTCGCGTAGCTATCAAGTACCCCCATGTTGTCATGGTTTTGATTTCTAGTTCATGCATATAAAAATTCACTTTTTGATGAAGTAAACCTTTATGGGTCATGTTGATTAAAAATAAATTTTGTATTGAAAAGAATTTTTTTTTTTTAAGCTTTCAACATATTTTGAATAAACAACTTTTAAGATGATATTTTTATATTTGGTTTCATAAAATGTGCCCTAAAGACATAAGTTAGCCTTTCCCAACCTTTAAATGTACTCCAGATCTTGAAAGGCATTAATTAGTCTTTATCGTTTCGCGCTTTGCTGAGAAAACTCTTAGAATACGTACTCTTCATCGTGAAATTAGTGATGTTACATGTGGAATGCCATGAAACATGACATGGATTAGGTGTAGGGAAGGGGTGGGAGACATGAGAAGGAGATGGAGGTATTTGTTATTGTTAACCATGTTATTTGTGCTAAGTATTGATTGACTTTGTCACCGACTAATCTTTGTTGGGTGACAACCTTTAGAAGGTCTCTCCTCCCAACCATGTTTTTTCTATCCACAAAGATAGAGGTAATTTTGAAGTGGGCATCCCTAATCAACATCATTGGCTGTCATTACACACATGGCACCATCAATCCTTACGTCAATGGTGACGCATATTTCTGTCTCTGTATCATTGACATTTTTTATCAAAGGCATGTTCAGTCTCTAATATTGACACGACACTGATACTTGTAATTACATTCAGTTAATTCTTTTTCTCAAATTATTAGTTTATTACCGTTGCCAACTTATCAATGTCGTGTTTATGTCGACGCTTCATAGATTTTTGTTAGTCATGTGAGCTTCAAACAAAAGAAGATCGATAAAAGAGACTAACACAGGAAAAAATATATTTACAGCCTTCTAGTTAATTCCAAGGGGAAAAAGCTATGTTAGTGAGAAAAGACAGATGTTACAGCTGGGTGGAGGACAAAGTATATCCTTTCAAAGTAGTGGAACTATCTACTGACCTGTTTTGTTTGCTTATCATAAAAGGAAAATGTAAACTCTTTTAAACAACATCCAATAGAAGATGTAAAACAAATGTAATTGATATTTTAAGTAATTTGAGCTAGTTGCATAAACTGCACGCAATGAAAGAACTTTCACCTCCTTGTCATTTTCAAAATGAGTGACTCATCCACTACTCATCAACAGCCCCACAAATTAAGCAAGTGATTGATTATTTTTTTTATGAAATAGCTAACCTATTTTTAACTTCTTCTCAGCTTATTTTCCATAAGCCTTTGTGATAAAATTATGAAAATCAACTTACATAAACTGATAAAAGTGCTTATTGCCATAAACTCTTCAGTGATAAGTTATTATTGAATAAATATTACTTAAGTAGTTTACCACATGTACATTCAATTCAAACAAACTTGACCTCAAAAGTATCCTTCTGACTGTTGTTTGAGTTAAAGATGAAGTAACTCCATGAGAAAACAAAAAAATTAAAGTAGTTGAAACAGTGATAGATTTTTATTTGCATTTTTTCCATGATCATGATCGCATGGTTTGTTTAGTTAATGAGTAGTGTCTCTATCTTCATGTTACAGTGCTGAAAGCACCAGGGATGGAACCTCTCAAAGTTTGTTTGAACAAACAGTATGAAGTAGCAGATGATATTACAGTGTGGGAATGGACTGGCTCTGCTTGGGACGAAGGAGCCGAAGCATCGCAGTGGTTCTCGGATTATTTAGGAAATCCTACTAAACTGGTCCGCTTCAATACTGGTAACATCTTTGAAACCTTAACGGATAATAAAACAGCACTAACAATGTTAAGAAGGATTTGTTACTTAGACATGTTAATGTACAAAAAATTCAATTTAACATATGCATGTAATGCACAATGGTTCCATGAACCGTAGACACGTTGTGCATGACATAAATAACCACGATAACTCTCAAATAATGTTTCCAATTGCAGCTTCAGAAGTTAGAAAAGTAGACCCTGATTATGTCGAGGGACCGCACCAGACCTTTTTCAGTGATGGCTATCCGTACTTAATCGCATCTCAGGTCAGTCCAGTTGCAGTTGGGAAACAAAGTCAAAATTATTTATATAAGTCTTTACTTTTTACTTGCCATTTACTACTTCCAGGAATCATTGGATGCACTAAACGAGCTTCTAGAGGAACCAATACTTATGAATCGTTTCAGACCCAAGTATTAATGTTTTCATGCCTTTGTGTCTAGTGTTTCATAGTATTCGTTACTAATTTAGATCACGCGATTGAGATTTTGGTGCCATGTGGTGCAGTATCCTTGTTGAAGGTTGTGAACCGTATTCTGAAGACCTATGGAGAGATTTCAAGATAAGCAGTTTTTCATTTCAGGGTGCCAAGCTGTGTTACCGTTGTAAGGTGAAAACTTCTACTTTATAATCTTCTACATATCAATATTCAAAAAGCGATCTGAACCAACCGGTTCAACCTATTGAACCAGGAACCGTTCAATTGACTGGTTGGTTTGATCTCGGTTACATTAATCTGAGAATACATGCTAATAGCATTTATCTAACGTGCATTATTGATGATGCTTATTATGGTAAGATTCCAACAATCAATCAAGAGACAGCAAAAGTTGGAGCTGAACCAAATGAAACTCTCATGAAATATAGGTCTGGCCAAGTCATAAGACCAGATGATAGAAACAAAAAAAGGGTGAGACATTCAGTCATCAAACTTTAAATTAAAATGTACCTTTTGTTCATTGGTGACATGTGAAATGCTTGTGTTGCAGGTCTACTTTGGTCATGATATAGTGTGGAACTGGATGGAATCTTCTTCTATAGGGGATGGAAAAGTCCTTAAATTGGGAGATCCTGTTTATGTTATCAAAAAGTTCTCTTCTCCAGCAGAAGCAGCTGCTTAA

Protein sequence

>MS.gene58671.t1

MSVAASKSVTESATPEAKVTGIFVYPVKSCRGISLSQAPLTPSGFRWDRQWMVVNSKGRACTQRVEPKLALVEVEFPPEAFDEHWEPTTDSFMVLKAPGMEPLKVCLNKQYEVADDITVWEWTGSAWDEGAEASQWFSDYLGNPTKLVRFNTASEVRKVDPDYVEGPHQTFFSDGYPYLIASQESLDALNELLEEPILMNRFRPNILVEGCEPYSEDLWRDFKISSFSFQGAKLCYRCKIPTINQETAKVGAEPNETLMKYRSGQVIRPDDRNKKRVYFGHDIVWNWMESSSIGDGKVLKLGDPVYVIKKFSSPAEAAA