AlfalfaGEDB | MS.gene61143

M. sativa cultivar XinJiangDaYe / MS.gene61143

KEGG: -
GO: -
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene61143.t1	XP_013453854.1	98.6	74	1	0	1	74	285	358	7.10E-32	146

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene61143.t1	D4N502	52.1	71	34	0	1	71	290	360	5.1e-15	81.3

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene61143.t1	A0A072UPY1	98.6	74	1	0	1	74	285	358	5.1e-32	146.0

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049549	MS.gene61143	0.83092	2.24E-55	-1.69E-46
MS.gene050380	MS.gene61143	0.806219	9.15E-50	-1.69E-46
MS.gene050381	MS.gene61143	0.805102	1.57E-49	-1.69E-46
MS.gene050647	MS.gene61143	0.815054	1.13E-51	-1.69E-46
MS.gene051138	MS.gene61143	0.804434	2.16E-49	-1.69E-46
MS.gene051844	MS.gene61143	0.804704	1.90E-49	-1.69E-46
MS.gene052211	MS.gene61143	0.835694	1.45E-56	-1.69E-46
MS.gene05240	MS.gene61143	0.837223	5.90E-57	-1.69E-46
MS.gene052606	MS.gene61143	0.827096	1.89E-54	-1.69E-46
MS.gene053031	MS.gene61143	0.825922	3.60E-54	-1.69E-46

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Find 12 sgRNAs with CRISPR-Local

Find 16 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAATGTACATTGATGACATG+AGG	0.655321	5.1:-37378417	MS.gene61143:CDS
AATGTCGTTGAACACTGCAG+GGG	0.691919	5.1:+37378489	None:intergenic
AGCAACGATTAACTCAGAGA+AGG	0.647001	5.1:-37378593	MS.gene61143:CDS
AGCACTGTGAAATGTGGCAA+TGG	0.625118	5.1:+37378561	None:intergenic
AGTGTGGAAGATTTCTTCAA+AGG	0.508864	5.1:-37378466	MS.gene61143:CDS
AGTGTTCAACGACATTAGTG+TGG	0.716232	5.1:-37378482	MS.gene61143:CDS
CAATCTAGCACTGTGAAATG+TGG	0.587201	5.1:+37378555	None:intergenic
CGATTAACTCAGAGAAGGAG+AGG	0.590103	5.1:-37378588	MS.gene61143:CDS
CTAATGTCGTTGAACACTGC+AGG	0.481272	5.1:+37378487	None:intergenic
GGAGTAATAAGGCTTGGTAC+TGG	0.450966	5.1:+37378517	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AGTGTGGAAGATTTCTTCAA+AGG	-	chr5.1:37378541-37378560	MS.gene61143:CDS	35.0%
AGCAACGATTAACTCAGAGA+AGG	-	chr5.1:37378414-37378433	MS.gene61143:CDS	40.0%
AGTGTTCAACGACATTAGTG+TGG	-	chr5.1:37378525-37378544	MS.gene61143:CDS	40.0%
CAATCTAGCACTGTGAAATG+TGG	+	chr5.1:37378455-37378474	None:intergenic	40.0%
TAATGTCGTTGAACACTGCA+GGG	+	chr5.1:37378522-37378541	None:intergenic	40.0%
AATGTCGTTGAACACTGCAG+GGG	+	chr5.1:37378521-37378540	None:intergenic	45.0%
AGCACTGTGAAATGTGGCAA+TGG	+	chr5.1:37378449-37378468	None:intergenic	45.0%
CGATTAACTCAGAGAAGGAG+AGG	-	chr5.1:37378419-37378438	MS.gene61143:CDS	45.0%
CTAATGTCGTTGAACACTGC+AGG	+	chr5.1:37378523-37378542	None:intergenic	45.0%
TATTTCTCACGCCAGCTTGA+AGG	-	chr5.1:37378565-37378584	MS.gene61143:CDS	45.0%

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Chromosome	Type	Strat	End	Strand	Name
chr5.1	gene	37378402	37378627	37378402	ID=MS.gene61143
chr5.1	mRNA	37378402	37378627	37378402	ID=MS.gene61143.t1;Parent=MS.gene61143
chr5.1	exon	37378402	37378627	37378402	ID=MS.gene61143.t1.exon1;Parent=MS.gene61143.t1
chr5.1	CDS	37378402	37378627	37378402	ID=cds.MS.gene61143.t1;Parent=MS.gene61143.t1

Gene Sequence	>MS.gene61143 TATTGAACATCGAGCAACGATTAACTCAGAGAAGGAGAGGATTTCCATTGCCACATTTCACAGTGCTAGATTGAATGCAATTCTTGCTCCAGTACCAAGCCTTATTACTCCTAAAACCCCTGCAGTGTTCAACGACATTAGTGTGGAAGATTTCTTCAAAGGATATTTCTCACGCCAGCTTGAAGGAAAAATGTACATTGATGACATGAGGATGAAAAATGAGTGA
Protein sequence	>MS.gene61143.t1 YUTSSNDULREGEDFHCHISQCUIECNSCSSTKPYYSUNPCSVQRHUCGRFLQRIFLTPAURKNVHUUHEDEKUV